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taxpubcustom-elements-NS0-v1.ent
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taxpubcustom-elements-NS0-v1.ent
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<!-- ============================================================= -->
<!-- PUBLIC DOCUMENT TYPE DEFINITION -->
<!-- TYPICAL INVOCATION -->
<!--
"-//TaxPub//DTD Taxonomic Treatment Publishing Elements v1.0 20230203//EN"
Delivered as file "taxpubcustom-elements-NS0-v1.ent" -->
<!-- ============================================================= -->
<!ELEMENT tp:taxon-treatment (tp:treatment-meta?, (tp:nomenclature | tp:mixed-nomenclature) , (tp:treatment-sec | tp:taxon-treatment)*, ref-list? ) >
<!ATTLIST tp:taxon-treatment
%jats-common-atts;
%taxpub-namespace-att;
auth-code CDATA #IMPLIED >
<!--~~ <tp:taxon-treatment>
A publication or or section of a publication documenting the features or distribution
of a related group of organisms (called a "taxon", plural "taxa") in ways adhering to
highly formalized conventions. ~
~~
~~
~~-->
<!ELEMENT tp:treatment-meta %sec-meta-model; >
<!ATTLIST tp:treatment-meta
%jats-common-atts; >
<!--~~ <tp:treatment-meta>
Bibliographic metadata describing at taxonomic treatment ~
~~
~~
~~-->
<!ELEMENT tp:nomenclature %nomenclature-model; >
<!ATTLIST tp:nomenclature
%jats-common-atts; >
<!--~~ <tp:nomenclature>
The heading of a taxonomic treatment, with element only content containing the scientific name of the taxon
described by the treatment, and possibly the authority for the taxon, citations to
previous descriptions, designations of type-genus, and type-species, and other
information. ~
~~
~~
~~-->
<!ELEMENT tp:mixed-nomenclature %mixed-nomenclature-model; >
<!ATTLIST tp:mixed-nomenclature
%jats-common-atts; >
<!--~~ <tp:mixed-nomenclature>
The heading of a taxonomic treatment, with possibly mixed content containing text the scientific name of the taxon
described by the treatment, and possibly the authority for the taxon, citations to
previous descriptions, designations of type-genus, and type-species, and other
information. ~
~~
~~
~~-->
<!ELEMENT tp:treatment-sec %taxon-sec-model; >
<!ATTLIST tp:treatment-sec
%sec-atts; >
<!--~~ <tp:treatment-sec A section of a taxonomic treatment. For example, diagnosis, materials examined,
etymology, etc,,, ~
~~
~~
~~-->
<!ELEMENT tp:taxon-authority (#PCDATA | object-id | tp:taxon-authority-part)* >
<!ATTLIST tp:taxon-authority
%jats-common-atts;
role CDATA #IMPLIED>
<!--~~ <tp:taxon-authority>
Elements that are linked to the name in the original treatment of a taxon as
designated by the authors of the respective original publication. ~
~
~~ model This can be anything from a single author to a whole string including author,
year, publication page, etc.. Formica rufa L. or Formica rufa Linnaeus 1758:580 ~
~~
~~-->
<!ELEMENT tp:taxon-authority-part (#PCDATA | object-id | tp:taxon-authority-part)* >
<!ATTLIST tp:taxon-authority-part
%jats-common-atts;
tp:taxon-authority-part-type CDATA #IMPLIED>
<!--~~ <tp:taxon-authority-part>
An element that is linked to the name in the original treatment of a taxon as
designated by the authors of the respective original publication. ~
~~ model This is a single element in of the taxon-authority element. er.g. a single author
(Linnaeus), the year of publication (1758) >~
~~
~~-->
<!ELEMENT tp:taxon-status (#PCDATA) >
<!ATTLIST tp:taxon-status
%jats-common-atts;
%might-link-atts; >
<!--~~ <tp:taxon-status>
The nomenclatorial status of a particular taxon. ~
~~ model This can designate an act that happened in an earlier, but cited citation, or
that happens within this treatment. Eg syn. vs. syn. nov.: The former refers to a
synonymy made, the latter to a synonym being proposed in the actual treatment. ~
~~
~~-->
<!ELEMENT tp:taxon-identifier (#PCDATA) >
<!ATTLIST tp:taxon-identifier
%jats-common-atts;
%might-link-atts; >
<!--~~ <tp:taxon-identifier>
A standard identifier associated with a particular taxon. ~
~~ model The taxon-identifier could be a LSID or other GUID ~
~~
~~-->
<!ELEMENT tp:nomenclature-citation-list (#PCDATA | tp:taxon-name | tp:nomenclature-citation)* >
<!ATTLIST tp:nomenclature-citation-list
%jats-common-atts;
content-type CDATA #IMPLIED >
<!--~~ <tp:nomenclature-citation-list>
A section in a treatment that includes the citation of one or several previous
treatments of the taxon. ~
~~
~~
~~-->
<!ELEMENT tp:nomenclature-citation (#PCDATA | tp:taxon-name | tp:taxon-authority | tp:type-genus | tp:type-species | mixed-citation | xref | tp:material-citation | tp:taxon-status | comment )* >
<!ATTLIST tp:nomenclature-citation
%jats-common-atts;
content-type CDATA #IMPLIED >
<!--~~ <tp:nomenclature-citation>
The citation of a nomenclatorial act or other citation of the taxon in the published
record. ~
~~
~~
~~-->
<!ELEMENT tp:type-genus (tp:taxon-name, tp:material-location?) >
<!ATTLIST tp:type-genus
%jats-common-atts; >
<!--~~ <tp:type-genus>
The species selected as the reference species at the moment of the description of a
new genus level taxon. ~
~~
~~
~~-->
<!ELEMENT tp:type-species (tp:taxon-name, tp:material-location?) >
<!ATTLIST tp:type-species
%jats-common-atts; >
<!--~~ <tp:type-species>
The specimen upon which the species or infraspecific level taxon is based and which is
explicitly designated as the holotype. ~
~~ model The status is defined by the code, of which the designation as holotype is
requested to create an available name , lectotype the selection of a type from a series
of syntypes and neotype the designation of a new type. These designations are ruled by
the Code (see ICZN ). The designation of paratypes, androtypes is arbitrary. ~
~~
~~-->
<!ELEMENT tp:type-status (#PCDATA | object-id)* >
<!ATTLIST tp:type-status
%jats-common-atts;
designation (y|n) 'n' >
<!--~~ <tp:type-status>
~~
~~
~~
~~-->
<!ELEMENT tp:taxon-type-location (#PCDATA | object-id)* >
<!ATTLIST tp:taxon-type-location
%jats-common-atts; >
<!--~~ <tp:taxon-type-location>
The institution where a type specimen is housed. ~
~~ model From a nomenclatorial point of view the name of depositary institution of the
holotype has to be explicitely mentioned in a treatment of a new species level taxon in
order to create an available name. Acronoyms of the institutions can be used. The
location of the institution has to be provided. Institutions can be private collections
to public natural history museums. ~
~~
~~-->
<!-- RED ELEMENTS -->
<!ELEMENT tp:taxon-name (#PCDATA | tp:taxon-name-part | object-id)* >
<!ATTLIST tp:taxon-name
%jats-common-atts;
auth-code CDATA #IMPLIED
rank CDATA #IMPLIED
reg CDATA #IMPLIED >
<!--~~ <tp:taxon-name>
The name of a taxon. ~
~~ model Generally this is a scientific name following the convention of the Codes ruling
nomenclature (eg International Code for Zoological Nomenclature (ICZN ), but if can also
be a vernacular name as used in field guides. ~
~~
~~-->
<!ELEMENT tp:taxon-name-part (#PCDATA | tp:taxon-name-part | object-id)* >
<!ATTLIST tp:taxon-name-part
%jats-common-atts;
taxon-name-part-type CDATA #REQUIRED
reg CDATA #IMPLIED >
<!--~~ <tp:taxon-name-part>
A component of taxonomic name. For example, specific epithet, genus name, etc... ~
~~
~~
~~-->
<!ELEMENT tp:descriptive-statement (#PCDATA | tp:descriptive-statement-part | object-id)* >
<!ATTLIST tp:descriptive-statement
%jats-common-atts;
%might-link-atts; >
<!--~~ <tp:descriptive-statement>
The description of a morphological trait.~
~~
~~
~~-->
<!ELEMENT tp:descriptive-statement-part (#PCDATA | object-id)* >
<!ATTLIST tp:descriptive-statement-part
%jats-common-atts;
%might-link-atts; >
<!--~~ <tp:descriptive-statement-part>
An individual component of a description of a morphological trait. ~
~~ model This can be the character (e.g. head) or the character state (round, ovoid,
red,..) ~
~~
~~-->
<!ELEMENT tp:material-citation (#PCDATA | named-content | tp:collecting-event | object-id | tp:type-status | tp:material-location | tp:taxon-name | xref)*>
<!ATTLIST tp:material-citation
%jats-common-atts;
%might-link-atts; >
<!--~~ <tp:material-citation>
A reference to biological material (e.g., a specimen, an observation) including those
used as the basis of a taxonomic description. ~
~~ model These can be very cursory to very detailed ("Costa Rica" to all the details
recorded during the collection). ~
~~
~~-->
<!ELEMENT tp:material-location (#PCDATA | object-id)* >
<!ATTLIST tp:mayterial-location
%jats-common-atts; >
<!--~~ <tp:material-location>
The physical location of the material referenced in the material citation. ~
~~ model The material-location can be a collection given by its acronym (e.g. AMNH for
American Museum of Natural History, New York) ~
~~
~~-->
<!ELEMENT tp:collecting-event (#PCDATA | tp:collecting-location | date | tp:taxon-name | object-id | named-content)* >
<!ATTLIST tp:collecting-event
%jats-common-atts; >
<!--~~ <tp:collecting-event>
The specific spatio-temporal event during which observations have been made or
specimens have been collected. ~
~~ model This can refer to a specific collection or many collections made. For example, if
a Malaise trap is set and collected thousands of species, then the collecting-event
remains the same for all the specimens. ~
~~
~~-->
<!ELEMENT tp:collecting-location (object-id*, tp:location*, comment? ) >
<!ATTLIST tp:collecting-location
%jats-common-atts; >
<!--~~ <tp:collecting-location>
The specific location or circumscription of the location of a collecting event. ~
~~
~~
~~-->
<!ELEMENT tp:location (#PCDATA %country-elements;)* >
<!ATTLIST tp:location
%jats-common-atts;
location-type CDATA #IMPLIED >
<!--~~ <tp:location>
A named spatial area.
~~
~~
~~-->