diff --git a/2023_Ferraz_NatureEcologyEvolution/2023_Ferraz_NatureEcologyEvolution.janno b/2023_Ferraz_NatureEcologyEvolution/2023_Ferraz_NatureEcologyEvolution.janno index 644deac..039f9aa 100644 --- a/2023_Ferraz_NatureEcologyEvolution/2023_Ferraz_NatureEcologyEvolution.janno +++ b/2023_Ferraz_NatureEcologyEvolution/2023_Ferraz_NatureEcologyEvolution.janno @@ -1,35 +1,35 @@ Poseidon_ID Genetic_Sex Group_Name Alternative_IDs Relation_To Relation_Degree Relation_Type Relation_Note Collection_ID Country Country_ISO Location Site Latitude Longitude Date_Type Date_C14_Labnr Date_C14_Uncal_BP Date_C14_Uncal_BP_Err Date_BC_AD_Start Date_BC_AD_Median Date_BC_AD_Stop Date_Note MT_Haplogroup Y_Haplogroup Source_Tissue Nr_Libraries Library_Names Capture_Type UDG Library_Built Genotype_Ploidy Data_Preparation_Pipeline_URL Endogenous Nr_SNPs Coverage_on_Target_SNPs Damage Contamination Contamination_Err Contamination_Meas Contamination_Note Genetic_Source_Accession_IDs Primary_Contact Publication Note Keywords Eager_ID Main_ID RateErrX RateErrY RateX RateY -CAP007_MNT U Unknown n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 2 CAP007.A0101.TF1.1_2;CAP007.A0101.MT1.1 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.5.1 n/a 353698 n/a 0.24629815144952558 0.008047 8.649106e-16 ANGSD[v0.935] Nr Snps (per library): 342;0. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB51863;ERS16192114;ERR11769643;ERR11770482 n/a n/a n/a n/a CAP007 CAP007 0.004361396840448 0.005843654916514 0.384518228020361 0.455373590595517 -CBE003_MNT U Unknown n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 2 CBE003.A0101.TF1.1;CBE003.A0101.MT1.1 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.5.1 n/a 498435 n/a 0.18679139680796508 0.002467 3.657192e-16 ANGSD[v0.935] Nr Snps (per library): 741;0. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB51863;ERS16192115;ERR11769644;ERR11770483 n/a n/a n/a n/a CBE003 CBE003 0.003568855922404 0.004935407877306001 0.397553587388143 0.501187083633043 -CBE004_MNT U Unknown n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 2 CBE004.A0101.MT1.1;CBE004.A0101.TF1.1 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.5.1 n/a 400728 n/a 0.23634218442402832 0.045094 2.91838e-15 ANGSD[v0.935] Nr Snps (per library): 0;491. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB51863;ERS16192116;ERR11770484;ERR11769645 n/a n/a n/a n/a CBE004 CBE004 0.0040737229896950005 0.00554803799334 0.398096273632213 0.48694874768815805 -CUB002_MNT U Unknown n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 2 CUB002.A0101.TF1.1;CUB002.A0101.MT1.1 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.5.1 n/a 185063 n/a 0.23027033570230307 0.12323 8.118802e-15 ANGSD[v0.935] Nr Snps (per library): 251;0. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB51863;ERS16192117;ERR11769646;ERR11770485 n/a n/a n/a n/a CUB002 CUB002 0.009132297852653001 0.001079543928483 0.729658009376508 0.006911775724712001 -CUB008_MNT U Unknown n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 2 CUB008.A0101.MT1.1;CUB008.A0101.TF1.1_2 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.5.1 n/a 54424 n/a 0.17126883597545403 n/a n/a n/a Nr Snps (per library): 0;15. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB51863;ERS16192118;ERR11770486;ERR11769647 n/a n/a n/a n/a CUB008 CUB008 0.018610867181960002 0.0025949087567310003 0.785744325240021 0.010378106108648 -EPS001_MNT U Unknown n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 2 EPS001.A0102.TF1.1;EPS001.A0101.MT1.1 1240K mixed ds haploid https://github.com/nf-core/eager/releases/tag/2.5.1 n/a 714574 n/a 0.13174890573318682 0.220429 8.347272e-13 ANGSD[v0.935] Nr Snps (per library): 4202;0. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB51863;ERS16192119;ERR11769648;ERR11770487 n/a n/a n/a n/a EPS001 EPS001 0.003063961266738 0.00037053458515500003 0.6158724108015461 0.00607669485221 -EPS002_MNT U Unknown n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 2 EPS002.A0101.MT1.1_2;EPS002.A0101.TF1.1_2 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.5.1 n/a 359967 n/a 0.15640400906278362 0.007909 1.478751e-15 ANGSD[v0.935] Nr Snps (per library): 0;394. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB51863;ERS16192120;ERR11770488;ERR11769649 n/a n/a n/a n/a EPS002 EPS002 0.004158112723107 0.005882301617142 0.36783800447859405 0.48486944136494603 -EPS003_MNT U Unknown n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 2 EPS003.A0101.TF1.1;EPS003.A0101.MT1.1_2 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.5.1 n/a 444559 n/a 0.118675062929029 0.165012 2.269312e-13 ANGSD[v0.935] Nr Snps (per library): 1759;0. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB51863;ERS16192121;ERR11769650;ERR11770489 n/a n/a n/a n/a EPS003 EPS003 0.005360478203795 0.000605315032718 0.7658853150181041 0.006630269902549 -EPS004_MNT U Unknown n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 2 EPS004.A0101.MT1.1_2;EPS004.A0101.TF1.1_2 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.5.1 n/a 374630 n/a 0.16996314162518095 0.019811 3.238567e-15 ANGSD[v0.935] Nr Snps (per library): 0;336. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB51863;ERS16192122;ERR11770490;ERR11769651 n/a n/a n/a n/a EPS004 EPS004 0.004284280800197 0.005820709565113 0.383794959452866 0.46716616875681305 -EPS005_MNT U Unknown n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 2 EPS005.A0101.MT1.1_2;EPS005.A0101.TF1.1 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.5.1 n/a 308482 n/a 0.16418307677512736 0.187108 6.799889e-15 ANGSD[v0.935] Nr Snps (per library): 0;742. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB51863;ERS16192123;ERR11770491;ERR11769652 n/a n/a n/a n/a EPS005 EPS005 0.006554258361639 0.00078366991351 0.7145677900372941 0.0069205053910170004 -EPS011_MNT U Unknown n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 2 EPS011.A0101.TF1.1_2;EPS011.A0101.MT1.1_2 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.5.1 n/a 292739 n/a 0.17794346524904608 0.161331 3.593999e-14 ANGSD[v0.935] Nr Snps (per library): 576;0. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB51863;ERS16192124;ERR11769653;ERR11770492 n/a n/a n/a n/a EPS011 EPS011 0.0068985725256760005 0.0007835078402140001 0.7171280157049721 0.006267505086596001 -GA4002_MNT U Unknown n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 2 GA4002.A0101.TF1.1_2;GA4002.A0101.MT1.1_2 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.5.1 n/a 221615 n/a 0.2726949380104351 0.160627 1.451805e-14 ANGSD[v0.935] Nr Snps (per library): 476;0. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB51863;ERS16192125;ERR11769654;ERR11770493 n/a n/a n/a n/a GA4002 GA4002 0.008131563247626001 0.0008612085226450001 0.7422411385895 0.005646869277606 -JBT001_MNT U Unknown n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 2 JBT001.A0101.MT1.1;JBT001.A0101.TF1.1 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.5.1 n/a 319633 n/a 0.19088922329662625 0.018344 3.778035e-16 ANGSD[v0.935] Nr Snps (per library): 0;243. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB51863;ERS16192126;ERR11770494;ERR11769655 n/a n/a n/a n/a JBT001 JBT001 0.004658557859490001 0.0063105716156090005 0.37424398959383703 0.45285921642028204 -JBT002_MNT U Unknown n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 2 JBT002.A0101.TF1.1;JBT002.A0101.MT1.1_2 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.5.1 n/a 319632 n/a 0.19137316838981014 0.018344 3.778035e-16 ANGSD[v0.935] Nr Snps (per library): 243;0. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB51863;ERS16192127;ERR11769656;ERR11770495 n/a n/a n/a n/a JBT002 JBT002 0.004658569434707 0.006310587270619001 0.37424491214737204 0.452860332769195 -JBT009_MNT U Unknown n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 2 JBT009.A0101.TF1.1;JBT009.A0101.MT1.1 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.5.1 n/a 934953 n/a 0.14997416805174654 0.006165 8.386503e-14 ANGSD[v0.935] Nr Snps (per library): 6761;0. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB51863;ERS16192128;ERR11769657;ERR11770496 n/a n/a n/a n/a JBT009 JBT009 0.0014354990614200002 0.0021384086136900004 0.38795662575948403 0.5662491050823331 -JBT010_MNT U Unknown n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 2 JBT010.A0101.MT1.1;JBT010.A0101.TF1.1 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.5.1 n/a 543628 n/a 0.18857483896487545 0.172828 4.125757e-13 ANGSD[v0.935] Nr Snps (per library): 0;2540. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB51863;ERS16192129;ERR11770497;ERR11769658 n/a n/a n/a n/a JBT010 JBT010 0.004618633399365001 0.00048386846292800006 0.7628446504059461 0.005683708817847 -JBT011_MNT U Unknown n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 2 JBT011.A0101.TF1.1_2;JBT011.A0101.MT1.1_2 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.5.1 n/a 287337 n/a 0.25159971696805794 -0.000586 2.345488e-17 ANGSD[v0.935] Nr Snps (per library): 209;0. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB51863;ERS16192130;ERR11769659;ERR11770498 n/a n/a n/a n/a JBT011 JBT011 0.005060827814515 0.0069669299949040005 0.38660043585545906 0.48298926341926 -JBT012_MNT U Unknown n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 2 JBT012.A0101.MT1.1;JBT012.A0101.TF1.1 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.5.1 n/a 640876 n/a 0.1752841793491135 0.0119 2.324954e-15 ANGSD[v0.935] Nr Snps (per library): 0;1387. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB51863;ERS16192131;ERR11770499;ERR11769660 n/a n/a n/a n/a JBT012 JBT012 0.002799626008518 0.003871645919268 0.38042548079411703 0.479539297679883 -JBT013_MNT U Unknown n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 2 JBT013.A0101.TF1.1;JBT013.A0101.MT1.1 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.5.1 n/a 606804 n/a 0.15696812618348494 0.007429 2.94944e-15 ANGSD[v0.935] Nr Snps (per library): 1205;0. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB51863;ERS16192132;ERR11769661;ERR11770500 n/a n/a n/a n/a JBT013 JBT013 0.003016234693591 0.00417458049584 0.38990650849276504 0.492310276965264 -JBT014_MNT U Unknown n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 2 JBT014.A0101.TF1.1;JBT014.A0101.MT1.1 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.5.1 n/a 326332 n/a 0.16329664865302265 0.179063 2.976402e-14 ANGSD[v0.935] Nr Snps (per library): 841;0. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB51863;ERS16192133;ERR11769662;ERR11770501 n/a n/a n/a n/a JBT014 JBT014 0.006652554435751 0.000659734324704 0.7590930830677871 0.005067151007466001 -JBT015_MNT U Unknown n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 2 JBT015.A0101.TF1.1;JBT015.A0101.MT1.1 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.5.1 n/a 722045 n/a 0.1390528811685416 0.216277 1.958856e-12 ANGSD[v0.935] Nr Snps (per library): 4962;0. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB51863;ERS16192134;ERR11769663;ERR11770502 n/a n/a n/a n/a JBT015 JBT015 0.0034974473312310004 0.00036139161042400005 0.7450661994272101 0.005396314215548001 -JBT018_MNT U Unknown n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 2 JBT018.A0101.MT1.1;JBT018.A0101.TF1.1 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.5.1 n/a 774013 n/a 0.14106681201308993 0.159702 7.734632e-13 ANGSD[v0.935] Nr Snps (per library): 0;5927. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB51863;ERS16192135;ERR11770503;ERR11769664 n/a n/a n/a n/a JBT018 JBT018 0.003274710098827 0.00036522248489200004 0.754362665960928 0.006367296080852 -JBT019_MNT U Unknown n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 2 JBT019.A0101.TF1.1;JBT019.A0101.MT1.1 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.5.1 n/a 454356 n/a 0.14724810700284457 0.165314 2.696814e-14 ANGSD[v0.935] Nr Snps (per library): 1640;0. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB51863;ERS16192136;ERR11769665;ERR11770504 n/a n/a n/a n/a JBT019 JBT019 0.005300516898618 0.000596643379214 0.7629817133524851 0.006562465815708 -JBT020_MNT U Unknown n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 2 JBT020.A0101.MT1.1_2;JBT020.A0101.TF1.1_2 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.5.1 n/a 244203 n/a 0.19730429754719253 0.008544 3.894445e-17 ANGSD[v0.935] Nr Snps (per library): 0;127. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB51863;ERS16192137;ERR11770505;ERR11769666 n/a n/a n/a n/a JBT020 JBT020 0.0057612987079510005 0.007990744797436 0.39762092915927205 0.5041780975588921 -JBT021_MNT U Unknown n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 2 JBT021.A0101.TF1.1;JBT021.A0101.MT1.1 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.5.1 n/a 592078 n/a 0.18644046706952794 0.003103 2.869869e-15 ANGSD[v0.935] Nr Snps (per library): 1118;0. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB51863;ERS16192138;ERR11769667;ERR11770506 n/a n/a n/a n/a JBT021 JBT021 0.002972736979892 0.004203248740903 0.379474184449658 0.499734870170468 -JBT022_MNT U Unknown n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 2 JBT022.A0101.MT1.1;JBT022.A0101.TF1.1 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.5.1 n/a 719388 n/a 0.1846180083872476 0.187627 1.605989e-12 ANGSD[v0.935] Nr Snps (per library): 0;4920. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB51863;ERS16192139;ERR11770507;ERR11769668 n/a n/a n/a n/a JBT022 JBT022 0.003585565163442 0.00036445135948400003 0.7670481087331721 0.0053806488454200005 -JBT023_MNT U Unknown n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 2 JBT023.A0101.MT1.1;JBT023.A0101.TF1.1 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.5.1 n/a 687214 n/a 0.15143701102989887 0.203752 1.707349e-13 ANGSD[v0.935] Nr Snps (per library): 0;4376. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB51863;ERS16192140;ERR11770508;ERR11769669 n/a n/a n/a n/a JBT023 JBT023 0.0037461627443540002 0.00041052750082300004 0.7587831998434441 0.0061846774682450005 -JBT025_MNT U Unknown n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 2 JBT025.A0101.TF1.1;JBT025.A0101.MT1.1 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.5.1 n/a 668298 n/a 0.18115007680676287 0.00348 2.698886e-15 ANGSD[v0.935] Nr Snps (per library): 1613;0. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB51863;ERS16192141;ERR11769670;ERR11770509 n/a n/a n/a n/a JBT025 JBT025 0.0026590872143860004 0.0036943120929940005 0.37721649128699103 0.47983641489613504 -JBT026_MNT U Unknown n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 2 JBT026.A0101.TF1.1;JBT026.A0101.MT1.1 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.5.1 n/a 678913 n/a 0.21276447883640845 0.007587 9.52914e-15 ANGSD[v0.935] Nr Snps (per library): 1746;0. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB51863;ERS16192142;ERR11769671;ERR11770510 n/a n/a n/a n/a JBT026 JBT026 0.002637318774531 0.0035933681452420003 0.38526396328800305 0.47161289683949403 -PAI001_MNT U Unknown n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 2 PAI001.A0101.TF1.1_2;PAI001.A0101.MT1.1 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.5.1 n/a 360955 n/a 0.12335306361763453 0.000935 2.637799e-17 ANGSD[v0.935] Nr Snps (per library): 303;0. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB51863;ERS16192143;ERR11769672;ERR11770511 n/a n/a n/a n/a PAI001 PAI001 0.003979665076958 0.005577495126260001 0.32945916896946004 0.42624321176206403 -PLM001_MNT U Unknown n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 2 PLM001.A0101.TF1.1;PLM001.A0101.MT1.1 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.5.1 n/a 376153 n/a 0.28188207954607936 0.012267 9.525132999999998e-16 ANGSD[v0.935] Nr Snps (per library): 447;0. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB51863;ERS16192144;ERR11769673;ERR11770512 n/a n/a n/a n/a PLM001 PLM001 0.004320862738142001 0.005732626009561001 0.40524128054107605 0.470768964618814 -SAM014_MNT U Unknown n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 2 SAM014.A0101.MT1.1;SAM014.A0101.TF1.1 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.5.1 n/a 233741 n/a 4.7823878232706424e-2 0.035803 0.0 ANGSD[v0.935] Nr Snps (per library): 0;100. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB51863;ERS16192145;ERR11770513;ERR11769674 n/a n/a n/a n/a SAM014 SAM014 0.005839081840748 0.00789321030433 0.38862317534433805 0.468378947071364 -TDA002_MNT U Unknown n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 2 TDA002.A0101.MT1.1;TDA002.A0102.TF1.1_2_3 1240K minus ds haploid https://github.com/nf-core/eager/releases/tag/2.5.1 n/a 211981 n/a 0.14411746669912717 0.008917 4.615799e-16 ANGSD[v0.935] Nr Snps (per library): 0;178. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB51863;ERS16192146;ERR11770514;ERR11769675 n/a n/a n/a n/a TDA002 TDA002 0.006333950855652 0.008468990019491 0.41027393658989203 0.48400231661056103 -VSM001_MNT U Unknown n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 2 VSM001.A0101.TF1.1_2;VSM001.A0101.MT1.1 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.5.1 n/a 751315 n/a 7.768095862819695e-2 0.003718 6.856717e-15 ANGSD[v0.935] Nr Snps (per library): 2397;0. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB51863;ERS16192147;ERR11769676;ERR11770515 n/a n/a n/a n/a VSM001 VSM001 0.00228302355636 0.003307009151786 0.36765980854712005 0.5077855977511251 +CAP007_MNT M Capelinha n/a n/a n/a n/a n/a n/a Brazil BR Brazil_Southeast_Coast Capelinha -17.690833 -42.515833 C14 MAMS-17754 9253 25 n/a n/a n/a n/a C1d1 Q1b1a1a bone_pars_petrosa 2 CAP007.A0101.TF1.1_2;CAP007.A0101.MT1.1 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.5.1 n/a 353698 n/a 0.24629815144952558 0.008047 8.649106e-16 ANGSD[v0.935] Nr Snps (per library): 342;0. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB51863;ERS16192114;ERR11769643;ERR11770482 n/a n/a n/a n/a CAP007 CAP007 0.004361396840448 0.005843654916514 0.384518228020361 0.455373590595517 +CBE003_MNT M Cabeçuda n/a n/a n/a n/a n/a n/a Brazil BR Brazil_South_Coast Cabeçuda -28.5067 -48.86877 C14 MAMS-43997 3352 27 n/a n/a n/a n/a D1 Q1b1a1a bone_pars_petrosa 2 CBE003.A0101.TF1.1;CBE003.A0101.MT1.1 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.5.1 n/a 498435 n/a 0.18679139680796508 0.002467 3.657192e-16 ANGSD[v0.935] Nr Snps (per library): 741;0. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB51863;ERS16192115;ERR11769644;ERR11770483 n/a n/a n/a n/a CBE003 CBE003 0.003568855922404 0.004935407877306001 0.397553587388143 0.501187083633043 +CBE004_MNT M Cabeçuda n/a n/a n/a n/a n/a n/a Brazil BR Brazil_South_Coast Cabeçuda -28.5067 -48.86877 C14 Beta-383566 3030 30 n/a n/a n/a n/a D4 Q1b1a1a bone_pars_petrosa 2 CBE004.A0101.MT1.1;CBE004.A0101.TF1.1 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.5.1 n/a 400728 n/a 0.23634218442402832 0.045094 2.91838e-15 ANGSD[v0.935] Nr Snps (per library): 0;491. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB51863;ERS16192116;ERR11770484;ERR11769645 n/a n/a n/a n/a CBE004 CBE004 0.0040737229896950005 0.00554803799334 0.398096273632213 0.48694874768815805 +CUB002_MNT F CubatãoI n/a n/a n/a n/a n/a n/a Brazil BR Brazil_South_Coast Cubatão I -26.2233 -48.783 C14 MAMS-45781 2492 22 n/a n/a n/a n/a D1 n/a Tooth 2 CUB002.A0101.TF1.1;CUB002.A0101.MT1.1 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.5.1 n/a 185063 n/a 0.23027033570230307 0.12323 8.118802e-15 ANGSD[v0.935] Nr Snps (per library): 251;0. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB51863;ERS16192117;ERR11769646;ERR11770485 n/a n/a n/a n/a CUB002 CUB002 0.009132297852653001 0.001079543928483 0.729658009376508 0.006911775724712001 +CUB008_MNT F CubatãoI n/a n/a n/a n/a n/a n/a Brazil BR Brazil_South_Coast Cubatão I -26.2233 -48.783 C14 MAMS-38996 2602 21 n/a n/a n/a n/a A2 n/a Tooth 2 CUB008.A0101.MT1.1;CUB008.A0101.TF1.1_2 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.5.1 n/a 54424 n/a 0.17126883597545403 n/a n/a n/a Nr Snps (per library): 0;15. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB51863;ERS16192118;ERR11770486;ERR11769647 n/a n/a n/a n/a CUB008 CUB008 0.018610867181960002 0.0025949087567310003 0.785744325240021 0.010378106108648 +EPS001_MNT F Limão n/a n/a n/a n/a n/a n/a Brazil BR Brazil_Southeast_Coast Sambaqui Limão -7.781 -35.503 C14 MAMS-34571 448 25 n/a n/a n/a n/a B2 n/a bone_left_temporal;bone_pars_petrosa 2 EPS001.A0102.TF1.1;EPS001.A0101.MT1.1 1240K mixed ds haploid https://github.com/nf-core/eager/releases/tag/2.5.1 n/a 714574 n/a 0.13174890573318682 0.220429 8.347272e-13 ANGSD[v0.935] Nr Snps (per library): 4202;0. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB51863;ERS16192119;ERR11769648;ERR11770487 n/a n/a n/a n/a EPS001 EPS001 0.003063961266738 0.00037053458515500003 0.6158724108015461 0.00607669485221 +EPS002_MNT M Limão n/a n/a n/a n/a n/a n/a Brazil BR Brazil_Southeast_Coast Sambaqui Limão -7.781 -35.503 C14 MAMS-40647 2617 19 n/a n/a n/a n/a D1-D1d1 Q1b1a2 bone_left_temporal;bone_pars_petrosa 2 EPS002.A0101.MT1.1_2;EPS002.A0101.TF1.1_2 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.5.1 n/a 359967 n/a 0.15640400906278362 0.007909 1.478751e-15 ANGSD[v0.935] Nr Snps (per library): 0;394. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB51863;ERS16192120;ERR11770488;ERR11769649 n/a n/a n/a n/a EPS002 EPS002 0.004158112723107 0.005882301617142 0.36783800447859405 0.48486944136494603 +EPS003_MNT F Limão n/a n/a n/a n/a n/a n/a Brazil BR Brazil_Southeast_Coast Sambaqui Limão -7.781 -35.503 C14 MAMS-40648 1976 18 n/a n/a n/a n/a A2-A2m n/a bone_right_temporal;bone_pars_petrosa 2 EPS003.A0101.TF1.1;EPS003.A0101.MT1.1_2 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.5.1 n/a 444559 n/a 0.118675062929029 0.165012 2.269312e-13 ANGSD[v0.935] Nr Snps (per library): 1759;0. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB51863;ERS16192121;ERR11769650;ERR11770489 n/a n/a n/a n/a EPS003 EPS003 0.005360478203795 0.000605315032718 0.7658853150181041 0.006630269902549 +EPS004_MNT M Limão n/a n/a n/a n/a n/a n/a Brazil BR Brazil_Southeast_Coast Sambaqui Limão -7.781 -35.503 C14 MAMS-40649 1914 19 n/a n/a n/a n/a D1-D1d2 Q1b1a2 bone_left_temporal;bone_pars_petrosa 2 EPS004.A0101.MT1.1_2;EPS004.A0101.TF1.1_2 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.5.1 n/a 374630 n/a 0.16996314162518095 0.019811 3.238567e-15 ANGSD[v0.935] Nr Snps (per library): 0;336. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB51863;ERS16192122;ERR11770490;ERR11769651 n/a n/a n/a n/a EPS004 EPS004 0.004284280800197 0.005820709565113 0.383794959452866 0.46716616875681305 +EPS005_MNT F Limão n/a n/a n/a n/a n/a n/a Brazil BR Brazil_Southeast_Coast Sambaqui Limão -7.781 -35.503 C14 MAMS-40650 2025 18 n/a n/a n/a n/a C1b n/a bone_left_temporal;bone_occipital;bone_pars_petrosa 2 EPS005.A0101.MT1.1_2;EPS005.A0101.TF1.1 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.5.1 n/a 308482 n/a 0.16418307677512736 0.187108 6.799889e-15 ANGSD[v0.935] Nr Snps (per library): 0;742. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB51863;ERS16192123;ERR11770491;ERR11769652 n/a n/a n/a n/a EPS005 EPS005 0.006554258361639 0.00078366991351 0.7145677900372941 0.0069205053910170004 +EPS011_MNT F Limão n/a n/a n/a n/a n/a n/a Brazil BR Brazil_Southeast_Coast Sambaqui Limão -7.781 -35.503 n/a n/a n/a n/a n/a n/a n/a n/a A2-A2m n/a bone_maxilla;Tooth 2 EPS011.A0101.TF1.1_2;EPS011.A0101.MT1.1_2 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.5.1 n/a 292739 n/a 0.17794346524904608 0.161331 3.593999e-14 ANGSD[v0.935] Nr Snps (per library): 576;0. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB51863;ERS16192124;ERR11769653;ERR11770492 n/a n/a n/a n/a EPS011 EPS011 0.0068985725256760005 0.0007835078402140001 0.7171280157049721 0.006267505086596001 +GA4002_MNT F GalhetaIV n/a n/a n/a n/a n/a n/a Brazil BR Brazil_South_Coast Galheta IV -28.551 -48.785 C14 Beta-280010 1360 40 n/a n/a n/a n/a C1c n/a bone_pars_petrosa 2 GA4002.A0101.TF1.1_2;GA4002.A0101.MT1.1_2 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.5.1 n/a 221615 n/a 0.2726949380104351 0.160627 1.451805e-14 ANGSD[v0.935] Nr Snps (per library): 476;0. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB51863;ERS16192125;ERR11769654;ERR11770493 n/a n/a n/a n/a GA4002 GA4002 0.008131563247626001 0.0008612085226450001 0.7422411385895 0.005646869277606 +JBT001_MNT F JabuticabeiraII n/a n/a n/a n/a n/a n/a Brazil BR Brazil_South_Coast Jabuticabeira II -28.563 -48.977 C14 MAMS-38997 2401 21 n/a n/a n/a n/a C1c n/a bone_pars_petrosa 2 JBT001.A0101.MT1.1;JBT001.A0101.TF1.1 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.5.1 n/a 319633 n/a 0.19088922329662625 0.018344 3.778035e-16 ANGSD[v0.935] Nr Snps (per library): 0;243. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB51863;ERS16192126;ERR11770494;ERR11769655 n/a n/a n/a n/a JBT001 JBT001 0.004658557859490001 0.0063105716156090005 0.37424398959383703 0.45285921642028204 +JBT002_MNT M JabuticabeiraII n/a n/a n/a n/a n/a n/a Brazil BR Brazil_South_Coast Jabuticabeira II -28.563 -48.977 C14 MAMS-38998 2411 20 n/a n/a n/a n/a C1c Q1b1a bone_pars_petrosa 2 JBT002.A0101.TF1.1;JBT002.A0101.MT1.1_2 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.5.1 n/a 319632 n/a 0.19137316838981014 0.018344 3.778035e-16 ANGSD[v0.935] Nr Snps (per library): 243;0. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB51863;ERS16192127;ERR11769656;ERR11770495 n/a n/a n/a n/a JBT002 JBT002 0.004658569434707 0.006310587270619001 0.37424491214737204 0.452860332769195 +JBT009_MNT M JabuticabeiraII n/a n/a n/a n/a n/a n/a Brazil BR Brazil_South_Coast Jabuticabeira II -28.563 -48.977 C14 Beta-188382 2320 50 n/a n/a n/a n/a C1c Q1b1a1a1 bone_pars_petrosa 2 JBT009.A0101.TF1.1;JBT009.A0101.MT1.1 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.5.1 n/a 934953 n/a 0.14997416805174654 0.006165 8.386503e-14 ANGSD[v0.935] Nr Snps (per library): 6761;0. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB51863;ERS16192128;ERR11769657;ERR11770496 n/a n/a n/a n/a JBT009 JBT009 0.0014354990614200002 0.0021384086136900004 0.38795662575948403 0.5662491050823331 +JBT010_MNT F JabuticabeiraII n/a n/a n/a n/a n/a n/a Brazil BR Brazil_South_Coast Jabuticabeira II -28.563 -48.977 C14 MAMS-40639 2440 20 n/a n/a n/a n/a C1c n/a bone_pars_petrosa 2 JBT010.A0101.MT1.1;JBT010.A0101.TF1.1 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.5.1 n/a 543628 n/a 0.18857483896487545 0.172828 4.125757e-13 ANGSD[v0.935] Nr Snps (per library): 0;2540. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB51863;ERS16192129;ERR11770497;ERR11769658 n/a n/a n/a n/a JBT010 JBT010 0.004618633399365001 0.00048386846292800006 0.7628446504059461 0.005683708817847 +JBT011_MNT M JabuticabeiraII n/a n/a n/a n/a n/a n/a Brazil BR Brazil_South_Coast Jabuticabeira II -28.563 -48.977 n/a n/a n/a n/a n/a n/a n/a n/a C1c Q1b1a1a1 bone_pars_petrosa 2 JBT011.A0101.TF1.1_2;JBT011.A0101.MT1.1_2 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.5.1 n/a 287337 n/a 0.25159971696805794 -0.000586 2.345488e-17 ANGSD[v0.935] Nr Snps (per library): 209;0. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB51863;ERS16192130;ERR11769659;ERR11770498 n/a n/a n/a n/a JBT011 JBT011 0.005060827814515 0.0069669299949040005 0.38660043585545906 0.48298926341926 +JBT012_MNT M JabuticabeiraII n/a n/a n/a n/a n/a n/a Brazil BR Brazil_South_Coast Jabuticabeira II -28.563 -48.977 C14 MAMS-28362 2348 23 n/a n/a n/a n/a C1c Q1b1a1a1 bone_pars_petrosa 2 JBT012.A0101.MT1.1;JBT012.A0101.TF1.1 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.5.1 n/a 640876 n/a 0.1752841793491135 0.0119 2.324954e-15 ANGSD[v0.935] Nr Snps (per library): 0;1387. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB51863;ERS16192131;ERR11770499;ERR11769660 n/a n/a n/a n/a JBT012 JBT012 0.002799626008518 0.003871645919268 0.38042548079411703 0.479539297679883 +JBT013_MNT M JabuticabeiraII n/a n/a n/a n/a n/a n/a Brazil BR Brazil_South_Coast Jabuticabeira II -28.563 -48.977 C14 MAMS-40641 2420 19 n/a n/a n/a n/a C1c Q1b1a1a bone_pars_petrosa 2 JBT013.A0101.TF1.1;JBT013.A0101.MT1.1 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.5.1 n/a 606804 n/a 0.15696812618348494 0.007429 2.94944e-15 ANGSD[v0.935] Nr Snps (per library): 1205;0. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB51863;ERS16192132;ERR11769661;ERR11770500 n/a n/a n/a n/a JBT013 JBT013 0.003016234693591 0.00417458049584 0.38990650849276504 0.492310276965264 +JBT014_MNT F JabuticabeiraII n/a n/a n/a n/a n/a n/a Brazil BR Brazil_South_Coast Jabuticabeira II -28.563 -48.977 C14 MAMS-28363 2145 23 n/a n/a n/a n/a C1c n/a bone_pars_petrosa 2 JBT014.A0101.TF1.1;JBT014.A0101.MT1.1 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.5.1 n/a 326332 n/a 0.16329664865302265 0.179063 2.976402e-14 ANGSD[v0.935] Nr Snps (per library): 841;0. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB51863;ERS16192133;ERR11769662;ERR11770501 n/a n/a n/a n/a JBT014 JBT014 0.006652554435751 0.000659734324704 0.7590930830677871 0.005067151007466001 +JBT015_MNT F JabuticabeiraII n/a n/a n/a n/a n/a n/a Brazil BR Brazil_South_Coast Jabuticabeira II -28.563 -48.977 C14 MAMS-28365 2203 24 n/a n/a n/a n/a C1c n/a bone_pars_petrosa 2 JBT015.A0101.TF1.1;JBT015.A0101.MT1.1 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.5.1 n/a 722045 n/a 0.1390528811685416 0.216277 1.958856e-12 ANGSD[v0.935] Nr Snps (per library): 4962;0. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB51863;ERS16192134;ERR11769663;ERR11770502 n/a n/a n/a n/a JBT015 JBT015 0.0034974473312310004 0.00036139161042400005 0.7450661994272101 0.005396314215548001 +JBT018_MNT F JabuticabeiraII n/a n/a n/a n/a n/a n/a Brazil BR Brazil_South_Coast Jabuticabeira II -28.563 -48.977 C14 MAMS-28360 2386 23 n/a n/a n/a n/a C1c n/a bone_pars_petrosa 2 JBT018.A0101.MT1.1;JBT018.A0101.TF1.1 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.5.1 n/a 774013 n/a 0.14106681201308993 0.159702 7.734632e-13 ANGSD[v0.935] Nr Snps (per library): 0;5927. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB51863;ERS16192135;ERR11770503;ERR11769664 n/a n/a n/a n/a JBT018 JBT018 0.003274710098827 0.00036522248489200004 0.754362665960928 0.006367296080852 +JBT019_MNT F JabuticabeiraII n/a n/a n/a n/a n/a n/a Brazil BR Brazil_South_Coast Jabuticabeira II -28.563 -48.977 C14 MAMS-28359 1498 23 n/a n/a n/a n/a B2 n/a bone_pars_petrosa 2 JBT019.A0101.TF1.1;JBT019.A0101.MT1.1 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.5.1 n/a 454356 n/a 0.14724810700284457 0.165314 2.696814e-14 ANGSD[v0.935] Nr Snps (per library): 1640;0. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB51863;ERS16192136;ERR11769665;ERR11770504 n/a n/a n/a n/a JBT019 JBT019 0.005300516898618 0.000596643379214 0.7629817133524851 0.006562465815708 +JBT020_MNT M JabuticabeiraII n/a n/a n/a n/a n/a n/a Brazil BR Brazil_South_Coast Jabuticabeira II -28.563 -48.977 C14 MAMS-40644 2331 19 n/a n/a n/a n/a C1c Q1b1a1a1 bone_pars_petrosa 2 JBT020.A0101.MT1.1_2;JBT020.A0101.TF1.1_2 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.5.1 n/a 244203 n/a 0.19730429754719253 0.008544 3.894445e-17 ANGSD[v0.935] Nr Snps (per library): 0;127. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB51863;ERS16192137;ERR11770505;ERR11769666 n/a n/a n/a n/a JBT020 JBT020 0.0057612987079510005 0.007990744797436 0.39762092915927205 0.5041780975588921 +JBT021_MNT M JabuticabeiraII n/a n/a n/a n/a n/a n/a Brazil BR Brazil_South_Coast Jabuticabeira II -28.563 -48.977 C14 MAMS-40640 2323 19 n/a n/a n/a n/a C1c Q1b1a1a bone_pars_petrosa 2 JBT021.A0101.TF1.1;JBT021.A0101.MT1.1 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.5.1 n/a 592078 n/a 0.18644046706952794 0.003103 2.869869e-15 ANGSD[v0.935] Nr Snps (per library): 1118;0. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB51863;ERS16192138;ERR11769667;ERR11770506 n/a n/a n/a n/a JBT021 JBT021 0.002972736979892 0.004203248740903 0.379474184449658 0.499734870170468 +JBT022_MNT F JabuticabeiraII n/a n/a n/a n/a n/a n/a Brazil BR Brazil_South_Coast Jabuticabeira II -28.563 -48.977 n/a n/a n/a n/a n/a n/a n/a n/a C1c bone_pars_petrosa 2 JBT022.A0101.MT1.1;JBT022.A0101.TF1.1 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.5.1 n/a 719388 n/a 0.1846180083872476 0.187627 1.605989e-12 ANGSD[v0.935] Nr Snps (per library): 0;4920. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB51863;ERS16192139;ERR11770507;ERR11769668 n/a n/a n/a n/a JBT022 JBT022 0.003585565163442 0.00036445135948400003 0.7670481087331721 0.0053806488454200005 +JBT023_MNT F JabuticabeiraII n/a n/a n/a n/a n/a n/a Brazil BR Brazil_South_Coast Jabuticabeira II -28.563 -48.977 C14 MAMS-40641 2420 19 n/a n/a n/a n/a C1c n/a bone_pars_petrosa 2 JBT023.A0101.MT1.1;JBT023.A0101.TF1.1 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.5.1 n/a 687214 n/a 0.15143701102989887 0.203752 1.707349e-13 ANGSD[v0.935] Nr Snps (per library): 0;4376. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB51863;ERS16192140;ERR11770508;ERR11769669 n/a n/a n/a n/a JBT023 JBT023 0.0037461627443540002 0.00041052750082300004 0.7587831998434441 0.0061846774682450005 +JBT025_MNT M JabuticabeiraII n/a n/a n/a n/a n/a n/a Brazil BR Brazil_South_Coast Jabuticabeira II -28.563 -48.977 C14 MAMS-40642 2407 19 n/a n/a n/a n/a C1c Q1b1a1a1 bone_pars_petrosa 2 JBT025.A0101.TF1.1;JBT025.A0101.MT1.1 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.5.1 n/a 668298 n/a 0.18115007680676287 0.00348 2.698886e-15 ANGSD[v0.935] Nr Snps (per library): 1613;0. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB51863;ERS16192141;ERR11769670;ERR11770509 n/a n/a n/a n/a JBT025 JBT025 0.0026590872143860004 0.0036943120929940005 0.37721649128699103 0.47983641489613504 +JBT026_MNT M JabuticabeiraII n/a n/a n/a n/a n/a n/a Brazil BR Brazil_South_Coast Jabuticabeira II -28.563 -48.977 C14 MAMS-40643 2310 19 n/a n/a n/a n/a C1c Q1b1a1a bone_pars_petrosa 2 JBT026.A0101.TF1.1;JBT026.A0101.MT1.1 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.5.1 n/a 678913 n/a 0.21276447883640845 0.007587 9.52914e-15 ANGSD[v0.935] Nr Snps (per library): 1746;0. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB51863;ERS16192142;ERR11769671;ERR11770510 n/a n/a n/a n/a JBT026 JBT026 0.002637318774531 0.0035933681452420003 0.38526396328800305 0.47161289683949403 +PAI001_MNT M LocaDoSuin n/a n/a n/a n/a n/a n/a Brazil BR Central_Brazil Loca do Suin n/a n/a C14 MAMS-28708 8172 32 n/a n/a n/a n/a C4c Q1b1 bone_pars_petrosa 2 PAI001.A0101.TF1.1_2;PAI001.A0101.MT1.1 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.5.1 n/a 360955 n/a 0.12335306361763453 0.000935 2.637799e-17 ANGSD[v0.935] Nr Snps (per library): 303;0. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB51863;ERS16192143;ERR11769672;ERR11770511 n/a n/a n/a n/a PAI001 PAI001 0.003979665076958 0.005577495126260001 0.32945916896946004 0.42624321176206403 +PLM001_MNT M Palmeiras_Xingu n/a n/a n/a n/a n/a n/a Brazil BR Southeast_Amazonia Palmeiras-Xingu n/a n/a C14 MAMS-43998 477 21 n/a n/a n/a n/a B2b-n Q1b1a Tooth 2 PLM001.A0101.TF1.1;PLM001.A0101.MT1.1 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.5.1 n/a 376153 n/a 0.28188207954607936 0.012267 9.525132999999998e-16 ANGSD[v0.935] Nr Snps (per library): 447;0. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB51863;ERS16192144;ERR11769673;ERR11770512 n/a n/a n/a n/a PLM001 PLM001 0.004320862738142001 0.005732626009561001 0.40524128054107605 0.470768964618814 +SAM014_MNT M Kaingang n/a n/a n/a n/a n/a n/a Brazil BR Brazil_Southeast_Coast Kaingang n/a n/a C14 MAMS-28711 100 22 n/a n/a n/a n/a B2 Q1b1a1a1p Tooth 2 SAM014.A0101.MT1.1;SAM014.A0101.TF1.1 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.5.1 n/a 233741 n/a 4.7823878232706424e-2 0.035803 0.0 ANGSD[v0.935] Nr Snps (per library): 0;100. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB51863;ERS16192145;ERR11770513;ERR11769674 n/a n/a n/a n/a SAM014 SAM014 0.005839081840748 0.00789321030433 0.38862317534433805 0.468378947071364 +TDA002_MNT M PedraDoAlexandre_2 n/a n/a n/a n/a n/a n/a Brazil BR Northeast_of_Brazil Pedra do Alexandre -6.47358 -36.52447 n/a n/a n/a n/a n/a n/a n/a n/a C1b Q1b1a1a1p bone_pars_petrosa 2 TDA002.A0101.MT1.1;TDA002.A0102.TF1.1_2_3 1240K minus ds haploid https://github.com/nf-core/eager/releases/tag/2.5.1 n/a 211981 n/a 0.14411746669912717 0.008917 4.615799e-16 ANGSD[v0.935] Nr Snps (per library): 0;178. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB51863;ERS16192146;ERR11770514;ERR11769675 n/a n/a n/a n/a TDA002 TDA002 0.006333950855652 0.008468990019491 0.41027393658989203 0.48400231661056103 +VSM001_MNT M Vau_Una n/a n/a n/a n/a n/a n/a Brazil BR Northeast_of_Brazil Vau - Sta.M.Vitória -13.3098 -45.093 C14 MAMS-45782 629 21 n/a n/a n/a n/a B2b3a Q1b1a1a1 n/a 2 VSM001.A0101.TF1.1_2;VSM001.A0101.MT1.1 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.5.1 n/a 751315 n/a 7.768095862819695e-2 0.003718 6.856717e-15 ANGSD[v0.935] Nr Snps (per library): 2397;0. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB51863;ERS16192147;ERR11769676;ERR11770515 n/a n/a n/a n/a VSM001 VSM001 0.00228302355636 0.003307009151786 0.36765980854712005 0.5077855977511251