From f18cc07ee3f8f1cabfa16d1a076a5d859b83d064 Mon Sep 17 00:00:00 2001 From: Kavlahkaff <73996300+Kavlahkaff@users.noreply.github.com> Date: Thu, 28 Nov 2024 16:16:39 +0100 Subject: [PATCH] changed source tissue format from Tooth (molar) to tooth_molar --- .../2023_Salazar_MachuPicchu.janno | 110 +++++++++--------- 1 file changed, 55 insertions(+), 55 deletions(-) diff --git a/2023_Salazar_MachuPicchu/2023_Salazar_MachuPicchu.janno b/2023_Salazar_MachuPicchu/2023_Salazar_MachuPicchu.janno index e5425b5..aa7f966 100644 --- a/2023_Salazar_MachuPicchu/2023_Salazar_MachuPicchu.janno +++ b/2023_Salazar_MachuPicchu/2023_Salazar_MachuPicchu.janno @@ -1,57 +1,57 @@ Poseidon_ID Genetic_Sex Group_Name Alternative_IDs Relation_To Relation_Degree Relation_Type Relation_Note Collection_ID Country Country_ISO Location Site Latitude Longitude Date_Type Date_C14_Labnr Date_C14_Uncal_BP Date_C14_Uncal_BP_Err Date_BC_AD_Start Date_BC_AD_Median Date_BC_AD_Stop Date_Note MT_Haplogroup Y_Haplogroup Source_Tissue Nr_Libraries Library_Names Capture_Type UDG Library_Built Genotype_Ploidy Data_Preparation_Pipeline_URL Endogenous Nr_SNPs Coverage_on_Target_SNPs Damage Contamination Contamination_Err Contamination_Meas Contamination_Note Genetic_Source_Accession_IDs Primary_Contact Publication Note Keywords Eager_ID Main_ID RateErrX RateErrY RateX RateY -CCA-7-2_MNT F Urubamba Valley;Cusco;Casa Concha n/a n/a n/a n/a n/a n/a Peru PE Urubamba Valley;Cusco Casa Concha -13.51736 -71.97688 C14 UCIAMS-235043 500 15 n/a n/a n/a Calibration was done using a mixed calibration curve: Mixed (IntCal20, SHCal20) B2b n/a Tooth (molar) 1 CCA-7-2 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 n/a 907599 n/a 4.3169382219766855e-3 0.21619300000000002 1.3671749999999998e-12 ANGSD[v0.935] Nr Snps (per library): 9403. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB62808;ERS15565532;ERR11518440 n/a n/a n/a n/a CCA-7-2 CCA-7-2 0.002707800731072 0.000226449411452 0.7899886600363241 0.0037550384897260002 -KCA-1108_MNT F Cusco City;Cusco;Kusicancha n/a n/a n/a n/a n/a n/a Peru PE Cusco City;Cusco Kusicancha -13.51906 -71.97598 contextual n/a n/a n/a 1425 1479 1533 Dates (CE) taken from Table S1 A A2+(64)+16129 n/a Tooth (molar) 1 KCA-1108 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 n/a 795523 n/a 4.731621897429116e-3 0.208523 1.98348e-12 ANGSD[v0.935] Nr Snps (per library): 6922. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB62808;ERS15565533;ERR11518434 n/a n/a n/a n/a KCA-1108 KCA-1108 0.0031289075061210004 0.00027364621814400004 0.7810236439439551 0.004058595497864 -KCA-1298_MNT F Cusco City;Cusco;Kusicancha n/a n/a n/a n/a n/a n/a Peru PE Cusco City;Cusco Kusicancha -13.51906 -71.97598 contextual n/a n/a n/a 1425 1479 1533 Dates (CE) taken from Table S1 A B2 n/a Tooth (molar) 1 KCA-1298 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 n/a 783339 n/a 6.9191995712933295e-3 0.190624 2.105897e-12 ANGSD[v0.935] Nr Snps (per library): 6313. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB62808;ERS15565534;ERR11518432 n/a n/a n/a n/a KCA-1298 KCA-1298 0.003100630680855 0.00025891171460900003 0.7483690963749291 0.0035403865084810003 -KCA-1364_MNT F Cusco City;Cusco;Kusicancha n/a n/a n/a n/a n/a n/a Peru PE Cusco City;Cusco Kusicancha -13.51906 -71.97598 C14 UCIAMS-222477 475 15 n/a n/a n/a Calibration was done using a mixed calibration curve: Mixed (IntCal20, SHCal20) A2+(64) n/a Tooth (molar) 1 KCA-1364 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 n/a 836485 n/a 5.2284677132646e-3 0.180583 9.582034e-13 ANGSD[v0.935] Nr Snps (per library): 7525. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB62808;ERS15565535;ERR11518435 n/a n/a n/a n/a KCA-1364 KCA-1364 0.003155105512185 0.000312537131501 0.8096686895015001 0.005403857664716001 -KCA-3089_MNT F Cusco City;Cusco;Kusicancha n/a n/a n/a n/a n/a n/a Peru PE Cusco City;Cusco Kusicancha -13.51906 -71.97598 C14 UCIAMS-222480 415 20 n/a n/a n/a Calibration was done using a mixed calibration curve: Mixed (IntCal20, SHCal20) A2+(64)+16129 n/a Tooth (molar) 1 KCA-3089 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 n/a 775762 n/a 3.5074007735923698e-3 0.179518 2.042933e-12 ANGSD[v0.935] Nr Snps (per library): 6238. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB62808;ERS15565536;ERR11518429 n/a n/a n/a n/a KCA-3089 KCA-3089 0.0034622509043820003 0.000322104407514 0.8060417829119391 0.004744574648932001 -KMA-15A-1_MNT F Espinar Province;Cusco;Kanamarka n/a n/a n/a n/a n/a n/a Peru PE Espinar Province;Cusco Kanamarka -14.76304 -72.26427 C14 UCIAMS-235044 375 15 n/a n/a n/a Calibration was done using a mixed calibration curve: Mixed (IntCal20, SHCal20) C1c+195 n/a Tooth (molar) 1 KMA-15A-1 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 n/a 932968 n/a 3.490299843588446e-3 0.22698999999999997 5.19399e-12 ANGSD[v0.935] Nr Snps (per library): 10435. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB62808;ERS15565537;ERR11518461 n/a n/a n/a n/a KMA-15A-1 KMA-15A-1 0.002600043949513 0.000248213002719 0.797175047840038 0.0049390300921 -KMA-19-1_MNT F Espinar Province;Cusco;Kanamarka n/a n/a n/a n/a n/a n/a Peru PE Espinar Province;Cusco Kanamarka -14.76304 -72.26427 contextual n/a n/a n/a 1460 1550 1640 Dates (CE) taken from Table S1 A C1b n/a Tooth (molar) 1 KMA-19-1 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 n/a 901559 n/a 3.840257091561507e-3 0.217203 4.798669e-12 ANGSD[v0.935] Nr Snps (per library): 9330. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB62808;ERS15565538;ERR11518467 n/a n/a n/a n/a KMA-19-1 KMA-19-1 0.002633777205065 0.00025358587956300004 0.7695715449415741 0.004844418269930001 -KMA-2-2_MNT F Espinar Province;Cusco;Kanamarka n/a n/a n/a n/a n/a n/a Peru PE Espinar Province;Cusco Kanamarka -14.76304 -72.26427 contextual n/a n/a n/a 1460 1550 1640 Dates (CE) taken from Table S1 A B2b n/a Tooth (molar) 1 KMA-2-2 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 n/a 865892 n/a 3.991177243911227e-3 0.186017 2.189786e-12 ANGSD[v0.935] Nr Snps (per library): 8378. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB62808;ERS15565539;ERR11518456 n/a n/a n/a n/a KMA-2-2 KMA-2-2 0.003016172345569 0.00033021250977300005 0.810998250228608 0.00661187975825 -KMA-28-1_MNT F Espinar Province;Cusco;Kanamarka n/a n/a n/a n/a n/a n/a Peru PE Espinar Province;Cusco Kanamarka -14.76304 -72.26427 C14 UCIAMS-235045 345 15 n/a n/a n/a Calibration was done using a mixed calibration curve: Mixed (IntCal20, SHCal20) B2y n/a Tooth (molar) 1 KMA-28-1 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 n/a 898466 n/a 3.5280075902826484e-3 0.171305 1.94236e-12 ANGSD[v0.935] Nr Snps (per library): 9448. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB62808;ERS15565540;ERR11518463 n/a n/a n/a n/a KMA-28-1 KMA-28-1 0.002940195349513 0.000286148862475 0.8324614095348131 0.005368219441987 -MP107B_MNT F Urubamba Valley;Cusco;Machu Picchu n/a n/a n/a n/a n/a ANTPA003248.1 Peru PE Urubamba Valley;Cusco Machu Picchu -13.16307 -72.54513 C14 UCIAMS-226316 440 20 n/a n/a n/a Calibration was done using a mixed calibration curve: Mixed (IntCal20, SHCal20) A2-64 n/a Tooth (molar) 1 MP107B 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 n/a 128072 n/a 5.51109294171292e-3 0.215209 3.524849e-15 ANGSD[v0.935] Nr Snps (per library): 113. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB62808;ERS15565541;ERR11518443 n/a n/a n/a n/a MP107B MP107B 0.011728632742054 0.0008966006362790001 0.782196796301132 0.0031057787782 -MP13_MNT F Urubamba Valley;Cusco;Machu Picchu n/a n/a n/a n/a n/a ANTPA3166;Machu Picchu Cemetery 1 Peru PE Urubamba Valley;Cusco Machu Picchu -13.16307 -72.54513 contextual n/a n/a n/a 1400 1466 1533 Dates (CE) taken from Table S1 A n/a n/a Tooth (caninus) 1 MP13 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 n/a 1335 n/a 2.1043138433789266e-3 n/a n/a n/a Nr Snps (per library): 6. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB62808;ERS15565542;ERR11518444 n/a n/a n/a n/a MP13 MP13 0.14163899543392 0.0 1.278667385940826 0.0 -MP23_MNT F Urubamba Valley;Cusco;Machu Picchu n/a n/a n/a n/a n/a ANTPA3173;Machu Picchu Cemetery 3 Peru PE Urubamba Valley;Cusco Machu Picchu -13.16307 -72.54513 C14 UCIAMS-222469 395 20 n/a n/a n/a Calibration was done using a mixed calibration curve: Mixed (IntCal20, SHCal20) C1b+16311 n/a Tooth (molar) 1 MP23 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 n/a 324906 n/a 5.977300061120275e-3 0.178751 4.651805e-14 ANGSD[v0.935] Nr Snps (per library): 836. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB62808;ERS15565543;ERR11518448 n/a n/a n/a n/a MP23 MP23 0.006898713006823 0.000543387634028 0.784016413857441 0.0033051428616420004 -MP27_MNT M Urubamba Valley;Cusco;Machu Picchu n/a n/a n/a n/a n/a ANTPA3174;Machu Picchu Cemetery 3 Peru PE Urubamba Valley;Cusco Machu Picchu -13.16307 -72.54513 contextual n/a n/a n/a 1400 1466 1533 Dates (CE) taken from Table S1 A B2(ai2) Q1b1a1a Tooth (molar) 1 MP27 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 n/a 491322 n/a 1.550242472444157e-2 0.010957 7.00059e-15 ANGSD[v0.935] Nr Snps (per library): 950. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB62808;ERS15565544;ERR11518499 n/a n/a n/a n/a MP27 MP27 0.004238238919325001 0.005139567667025001 0.47149221085200105 0.459036545037357 -MP31A_MNT U Urubamba Valley;Cusco;Machu Picchu n/a n/a n/a n/a n/a ANTPA003179;Machu Picchu Cemetery 2 Peru PE Urubamba Valley;Cusco Machu Picchu -13.16307 -72.54513 C14 UCIAMS-222475 455 20 n/a n/a n/a Calibration was done using a mixed calibration curve: Mixed (IntCal20, SHCal20) A2ac(2) n/a Tooth (molar) 1 MP31A 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 n/a 123561 n/a 6.6287817003868954e-3 0.131479 4.291985e-15 ANGSD[v0.935] Nr Snps (per library): 123. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB62808;ERS15565545;ERR11518458 n/a n/a consistent with XX but not XY n/a MP31A MP31A 0.012641242441134001 0.000722265856795 0.858750043836036 0.0019108840002020002 -MP32_MNT U Urubamba Valley;Cusco;Machu Picchu n/a n/a n/a n/a n/a ANTPA003182;Machu Picchu Cemetery 2 Peru PE Urubamba Valley;Cusco Machu Picchu -13.16307 -72.54513 C14 UCIAMS-222468 385 20 n/a n/a n/a Calibration was done using a mixed calibration curve: Mixed (IntCal20, SHCal20) C1b3 Q1b1a1a Tooth (molar) 1 MP32 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 n/a 393180 n/a 5.311607758196318e-3 0.0036500000000000005 8.939433e-16 ANGSD[v0.935] Nr Snps (per library): 503. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB62808;ERS15565546;ERR11518466 n/a n/a n/a n/a MP32 MP32 0.003949152658001 0.00536733721096 0.37075461338922505 0.45156654606449004 -MP33_MNT M Urubamba Valley;Cusco;Machu Picchu n/a n/a n/a n/a n/a ANTPA003183;Machu Picchu Cemetery 2 Peru PE Urubamba Valley;Cusco Machu Picchu -13.16307 -72.54513 C14 UCIAMS-222465 485 15 n/a n/a n/a Calibration was done using a mixed calibration curve: Mixed (IntCal20, SHCal20) B2b(11a) Q1b Tooth (molar) 1 MP33 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 n/a 138071 n/a 5.43294883305978e-3 n/a n/a n/a Nr Snps (per library): 50. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB62808;ERS15565547;ERR11518465 n/a n/a n/a n/a MP33 MP33 0.0077834483964620005 0.010085939174196 0.383895191452286 0.42558425146330103 -MP3a_MNT U Urubamba Valley;Cusco;Machu Picchu n/a n/a n/a n/a n/a ANTPA3157;Machu Picchu Cemetery 1 Peru PE Urubamba Valley;Cusco Machu Picchu -13.16307 -72.54513 C14 UCIAMS-222466 205 15 n/a n/a n/a Calibration was done using a mixed calibration curve: Mixed (IntCal20, SHCal20) C1b2 n/a Tooth (molar) 1 MP3a 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 n/a 823881 n/a 1.1918032326575274e-2 0.194529 3.4320229999999995e-12 ANGSD[v0.935] Nr Snps (per library): 10240. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB62808;ERS15565548;ERR11518632 n/a n/a consistent with XX but not XY n/a MP3a MP3a 0.00340001727621 0.000377418568363 0.841309261792007 0.0070601472744030004 -MP42A_MNT F Urubamba Valley;Cusco;Machu Picchu n/a n/a n/a n/a n/a ANTPA003196;Machu Picchu Cemetery 2 Peru PE Urubamba Valley;Cusco Machu Picchu -13.16307 -72.54513 contextual n/a n/a n/a 1400 1466 1533 Dates (CE) taken from Table S1 A B2 n/a Tooth (molar) 1 MP42A 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 n/a 202726 n/a 4.730702553404049e-3 0.132978 0.0 ANGSD[v0.935] Nr Snps (per library): 293. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB62808;ERS15565549;ERR11518472 n/a n/a n/a n/a MP42A MP42A 0.009386810058029 0.000838784359079 0.816908084646033 0.004438150014125001 -MP42B_MNT U Urubamba Valley;Cusco;Machu Picchu n/a n/a n/a n/a n/a ANTPA003197;Machu Picchu Cemetery 2 Peru PE Urubamba Valley;Cusco Machu Picchu -13.16307 -72.54513 contextual n/a n/a n/a 1400 1466 1533 Dates (CE) taken from Table S1 A C1b n/a Tooth (molar) 1 MP42B 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 n/a 241300 n/a 3.91165750136527e-3 0.19811500000000004 3.121731e-14 ANGSD[v0.935] Nr Snps (per library): 507. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB62808;ERS15565550;ERR11518471 n/a n/a consistent with XX but not XY n/a MP42B MP42B 0.007940705001909 0.000755371948468 0.748361492416839 0.0045944485218970006 -MP42C_MNT F Urubamba Valley;Cusco;Machu Picchu n/a n/a n/a n/a n/a ANTPA003199.1;Machu Picchu Cemetery 2 Peru PE Urubamba Valley;Cusco Machu Picchu -13.16307 -72.54513 C14 UCIAMS-226330 515 20 n/a n/a n/a Calibration was done using a mixed calibration curve: Mixed (IntCal20, SHCal20) B2 n/a Tooth (molar) 1 MP42C 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 n/a 9121 n/a 5.64135110358931e-3 n/a n/a n/a Nr Snps (per library): 13. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB62808;ERS15565551;ERR11518469 n/a n/a n/a n/a MP42C MP42C 0.047177435809531 0.015674058514366002 0.9297673822627731 0.070026939009035 -MP45A_MNT M Urubamba Valley;Cusco;Machu Picchu n/a n/a n/a n/a n/a ANTPA000524;Machu Picchu Cemetery 1 Peru PE Urubamba Valley;Cusco Machu Picchu -13.16307 -72.54513 C14 UCIAMS-222470 390 15 n/a n/a n/a Calibration was done using a mixed calibration curve: Mixed (IntCal20, SHCal20) B2 Q1b1a1a Tooth (molar) 1 MP45A 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 n/a 334116 n/a 4.479947134680233e-3 0.001467 1.0237810000000001e-16 ANGSD[v0.935] Nr Snps (per library): 388. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB62808;ERS15565552;ERR11518475 n/a n/a n/a n/a MP45A MP45A 0.004319270440153 0.006010179861037 0.366601964484958 0.46773590824064804 -MP48B_MNT M Urubamba Valley;Cusco;Machu Picchu n/a n/a n/a n/a n/a ANTPA003205;Machu Picchu Cemetery 1 Peru PE Urubamba Valley;Cusco Machu Picchu -13.16307 -72.54513 C14 UCIAMS-222467 425 20 n/a n/a n/a Calibration was done using a mixed calibration curve: Mixed (IntCal20, SHCal20) D1f n/a Tooth (molar) 1 MP48B 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 n/a 188504 n/a 5.534855457838533e-3 n/a n/a n/a Nr Snps (per library): 94. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB62808;ERS15565553;ERR11518477 n/a n/a n/a n/a MP48B MP48B 0.006963916579501001 0.00889868180397 0.42227579851600106 0.45558255231397604 -MP4B_MNT F Urubamba Valley;Cusco;Machu Picchu n/a n/a n/a n/a n/a ANTPA003158.2:Machu Picchu Cemetery 1 Peru PE Urubamba Valley;Cusco Machu Picchu -13.16307 -72.54513 C14 UCIAMS-222471 350 20 n/a n/a n/a Calibration was done using a mixed calibration curve: Mixed (IntCal20, SHCal20) A2-64 n/a Tooth (molar) 1 MP4B 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 n/a 347787 n/a 5.7000939108468665e-3 0.190019 8.464114e-14 ANGSD[v0.935] Nr Snps (per library): 1124. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB62808;ERS15565554;ERR11518478 n/a n/a n/a n/a MP4B MP4B 0.006629475021368 0.000527246325848 0.8127356473505201 0.0034971828473850004 -MP4D_MNT F Urubamba Valley;Cusco;Machu Picchu n/a n/a n/a n/a n/a ANTPA003158.4;Machu Picchu Cemetery 1 Peru PE Urubamba Valley;Cusco Machu Picchu -13.16307 -72.54513 contextual n/a n/a n/a 1400 1466 1533 Dates (CE) taken from Table S1 A B2b+152 n/a Tooth (pre-molar) 1 MP4D 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 n/a 200715 n/a 6.081615277017576e-3 0.153085 1.3675280000000001e-14 ANGSD[v0.935] Nr Snps (per library): 334. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB62808;ERS15565555;ERR11518481 n/a n/a n/a n/a MP4D MP4D 0.008862137888673 0.0006841280220920001 0.7564014903304851 0.0030593806521450003 -MP4E_MNT U Urubamba Valley;Cusco;Machu Picchu n/a n/a n/a n/a n/a ANTPA003158.5;Machu Picchu Cemetery 1 Peru PE Urubamba Valley;Cusco Machu Picchu -13.16307 -72.54513 contextual n/a n/a n/a 1400 1466 1533 Dates (CE) taken from Table S1 A B2 n/a Tooth (molar) 1 MP4E 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 n/a 62548 n/a 6.890256102440977e-3 n/a n/a n/a Nr Snps (per library): 48. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB62808;ERS15565556;ERR11518480 n/a n/a consistent with XX but not XY n/a MP4E MP4E 0.017649484760763 0.002513545609982 0.834117586212837 0.011516630258579 -MP4f_MNT F Urubamba Valley;Cusco;Machu Picchu n/a n/a n/a n/a n/a ANTPA003158.6;Machu Picchu Cemetery 1 Peru PE Urubamba Valley;Cusco Machu Picchu -13.16307 -72.54513 C14 UCIAMS-222472 540 20 n/a n/a n/a Calibration was done using a mixed calibration curve: Mixed (IntCal20, SHCal20) A2-64 n/a Tooth (molar) 1 MP4f 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 n/a 409310 n/a 4.31636272188836e-2 0.163765 4.197163e-13 ANGSD[v0.935] Nr Snps (per library): 2897. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB62808;ERS15565557;ERR11518485 n/a n/a n/a n/a MP4f MP4f 0.007050390305888001 0.000608907112929 1.20406993664454 0.006209111208717 -MP4i_MNT M Urubamba Valley;Cusco;Machu Picchu n/a n/a n/a n/a n/a ANTPA3159;Machu Picchu Cemetery 1 Peru PE Urubamba Valley;Cusco Machu Picchu -13.16307 -72.54513 C14 UCIAMS-222474 540 15 n/a n/a n/a Calibration was done using a mixed calibration curve: Mixed (IntCal20, SHCal20) B2 Q1b1a1a1h1 Tooth (molar) 1 MP4i 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 n/a 338161 n/a 4.347553396508273e-3 -0.000465 3.549831e-17 ANGSD[v0.935] Nr Snps (per library): 269. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB62808;ERS15565558;ERR11518489 n/a n/a n/a n/a MP4i MP4i 0.004806394014325001 0.006271107658550001 0.40573776908872405 0.45604887037156605 -MP50A_MNT U Urubamba Valley;Cusco;Machu Picchu n/a n/a n/a n/a n/a ANTPA003207.2;Machu Picchu Cemetery 3 Peru PE Urubamba Valley;Cusco Machu Picchu -13.16307 -72.54513 contextual n/a n/a n/a 1400 1466 1533 Dates (CE) taken from Table S1 A B2 n/a Tooth (molar) 1 MP50A 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 n/a 91116 n/a 6.2499238557035125e-3 n/a n/a n/a Nr Snps (per library): 55. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB62808;ERS15565559;ERR11518484 n/a n/a consistent with XX but not XY n/a MP50A MP50A 0.013937034017344 0.0014402789807490002 0.76916788602259 0.005577734855979 +CCA-7-2_MNT F Urubamba Valley;Cusco;Casa Concha n/a n/a n/a n/a n/a n/a Peru PE Urubamba Valley;Cusco Casa Concha -13.51736 -71.97688 C14 UCIAMS-235043 500 15 n/a n/a n/a Calibration was done using a mixed calibration curve: Mixed (IntCal20, SHCal20) B2b n/a tooth_molar 1 CCA-7-2 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 n/a 907599 n/a 4.3169382219766855e-3 0.21619300000000002 1.3671749999999998e-12 ANGSD[v0.935] Nr Snps (per library): 9403. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB62808;ERS15565532;ERR11518440 n/a n/a n/a n/a CCA-7-2 CCA-7-2 0.002707800731072 0.000226449411452 0.7899886600363241 0.0037550384897260002 +KCA-1108_MNT F Cusco City;Cusco;Kusicancha n/a n/a n/a n/a n/a n/a Peru PE Cusco City;Cusco Kusicancha -13.51906 -71.97598 contextual n/a n/a n/a 1425 1479 1533 Dates (CE) taken from Table S1 A A2+(64)+16129 n/a tooth_molar 1 KCA-1108 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 n/a 795523 n/a 4.731621897429116e-3 0.208523 1.98348e-12 ANGSD[v0.935] Nr Snps (per library): 6922. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB62808;ERS15565533;ERR11518434 n/a n/a n/a n/a KCA-1108 KCA-1108 0.0031289075061210004 0.00027364621814400004 0.7810236439439551 0.004058595497864 +KCA-1298_MNT F Cusco City;Cusco;Kusicancha n/a n/a n/a n/a n/a n/a Peru PE Cusco City;Cusco Kusicancha -13.51906 -71.97598 contextual n/a n/a n/a 1425 1479 1533 Dates (CE) taken from Table S1 A B2 n/a tooth_molar 1 KCA-1298 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 n/a 783339 n/a 6.9191995712933295e-3 0.190624 2.105897e-12 ANGSD[v0.935] Nr Snps (per library): 6313. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB62808;ERS15565534;ERR11518432 n/a n/a n/a n/a KCA-1298 KCA-1298 0.003100630680855 0.00025891171460900003 0.7483690963749291 0.0035403865084810003 +KCA-1364_MNT F Cusco City;Cusco;Kusicancha n/a n/a n/a n/a n/a n/a Peru PE Cusco City;Cusco Kusicancha -13.51906 -71.97598 C14 UCIAMS-222477 475 15 n/a n/a n/a Calibration was done using a mixed calibration curve: Mixed (IntCal20, SHCal20) A2+(64) n/a tooth_molar 1 KCA-1364 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 n/a 836485 n/a 5.2284677132646e-3 0.180583 9.582034e-13 ANGSD[v0.935] Nr Snps (per library): 7525. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB62808;ERS15565535;ERR11518435 n/a n/a n/a n/a KCA-1364 KCA-1364 0.003155105512185 0.000312537131501 0.8096686895015001 0.005403857664716001 +KCA-3089_MNT F Cusco City;Cusco;Kusicancha n/a n/a n/a n/a n/a n/a Peru PE Cusco City;Cusco Kusicancha -13.51906 -71.97598 C14 UCIAMS-222480 415 20 n/a n/a n/a Calibration was done using a mixed calibration curve: Mixed (IntCal20, SHCal20) A2+(64)+16129 n/a tooth_molar 1 KCA-3089 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 n/a 775762 n/a 3.5074007735923698e-3 0.179518 2.042933e-12 ANGSD[v0.935] Nr Snps (per library): 6238. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB62808;ERS15565536;ERR11518429 n/a n/a n/a n/a KCA-3089 KCA-3089 0.0034622509043820003 0.000322104407514 0.8060417829119391 0.004744574648932001 +KMA-15A-1_MNT F Espinar Province;Cusco;Kanamarka n/a n/a n/a n/a n/a n/a Peru PE Espinar Province;Cusco Kanamarka -14.76304 -72.26427 C14 UCIAMS-235044 375 15 n/a n/a n/a Calibration was done using a mixed calibration curve: Mixed (IntCal20, SHCal20) C1c+195 n/a tooth_molar 1 KMA-15A-1 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 n/a 932968 n/a 3.490299843588446e-3 0.22698999999999997 5.19399e-12 ANGSD[v0.935] Nr Snps (per library): 10435. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB62808;ERS15565537;ERR11518461 n/a n/a n/a n/a KMA-15A-1 KMA-15A-1 0.002600043949513 0.000248213002719 0.797175047840038 0.0049390300921 +KMA-19-1_MNT F Espinar Province;Cusco;Kanamarka n/a n/a n/a n/a n/a n/a Peru PE Espinar Province;Cusco Kanamarka -14.76304 -72.26427 contextual n/a n/a n/a 1460 1550 1640 Dates (CE) taken from Table S1 A C1b n/a tooth_molar 1 KMA-19-1 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 n/a 901559 n/a 3.840257091561507e-3 0.217203 4.798669e-12 ANGSD[v0.935] Nr Snps (per library): 9330. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB62808;ERS15565538;ERR11518467 n/a n/a n/a n/a KMA-19-1 KMA-19-1 0.002633777205065 0.00025358587956300004 0.7695715449415741 0.004844418269930001 +KMA-2-2_MNT F Espinar Province;Cusco;Kanamarka n/a n/a n/a n/a n/a n/a Peru PE Espinar Province;Cusco Kanamarka -14.76304 -72.26427 contextual n/a n/a n/a 1460 1550 1640 Dates (CE) taken from Table S1 A B2b n/a tooth_molar 1 KMA-2-2 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 n/a 865892 n/a 3.991177243911227e-3 0.186017 2.189786e-12 ANGSD[v0.935] Nr Snps (per library): 8378. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB62808;ERS15565539;ERR11518456 n/a n/a n/a n/a KMA-2-2 KMA-2-2 0.003016172345569 0.00033021250977300005 0.810998250228608 0.00661187975825 +KMA-28-1_MNT F Espinar Province;Cusco;Kanamarka n/a n/a n/a n/a n/a n/a Peru PE Espinar Province;Cusco Kanamarka -14.76304 -72.26427 C14 UCIAMS-235045 345 15 n/a n/a n/a Calibration was done using a mixed calibration curve: Mixed (IntCal20, SHCal20) B2y n/a tooth_molar 1 KMA-28-1 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 n/a 898466 n/a 3.5280075902826484e-3 0.171305 1.94236e-12 ANGSD[v0.935] Nr Snps (per library): 9448. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB62808;ERS15565540;ERR11518463 n/a n/a n/a n/a KMA-28-1 KMA-28-1 0.002940195349513 0.000286148862475 0.8324614095348131 0.005368219441987 +MP107B_MNT F Urubamba Valley;Cusco;Machu Picchu n/a n/a n/a n/a n/a ANTPA003248.1 Peru PE Urubamba Valley;Cusco Machu Picchu -13.16307 -72.54513 C14 UCIAMS-226316 440 20 n/a n/a n/a Calibration was done using a mixed calibration curve: Mixed (IntCal20, SHCal20) A2-64 n/a tooth_molar 1 MP107B 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 n/a 128072 n/a 5.51109294171292e-3 0.215209 3.524849e-15 ANGSD[v0.935] Nr Snps (per library): 113. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB62808;ERS15565541;ERR11518443 n/a n/a n/a n/a MP107B MP107B 0.011728632742054 0.0008966006362790001 0.782196796301132 0.0031057787782 +MP13_MNT F Urubamba Valley;Cusco;Machu Picchu n/a n/a n/a n/a n/a ANTPA3166;Machu Picchu Cemetery 1 Peru PE Urubamba Valley;Cusco Machu Picchu -13.16307 -72.54513 contextual n/a n/a n/a 1400 1466 1533 Dates (CE) taken from Table S1 A n/a n/a tooth_caninus) 1 MP13 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 n/a 1335 n/a 2.1043138433789266e-3 n/a n/a n/a Nr Snps (per library): 6. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB62808;ERS15565542;ERR11518444 n/a n/a n/a n/a MP13 MP13 0.14163899543392 0.0 1.278667385940826 0.0 +MP23_MNT F Urubamba Valley;Cusco;Machu Picchu n/a n/a n/a n/a n/a ANTPA3173;Machu Picchu Cemetery 3 Peru PE Urubamba Valley;Cusco Machu Picchu -13.16307 -72.54513 C14 UCIAMS-222469 395 20 n/a n/a n/a Calibration was done using a mixed calibration curve: Mixed (IntCal20, SHCal20) C1b+16311 n/a tooth_molar 1 MP23 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 n/a 324906 n/a 5.977300061120275e-3 0.178751 4.651805e-14 ANGSD[v0.935] Nr Snps (per library): 836. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB62808;ERS15565543;ERR11518448 n/a n/a n/a n/a MP23 MP23 0.006898713006823 0.000543387634028 0.784016413857441 0.0033051428616420004 +MP27_MNT M Urubamba Valley;Cusco;Machu Picchu n/a n/a n/a n/a n/a ANTPA3174;Machu Picchu Cemetery 3 Peru PE Urubamba Valley;Cusco Machu Picchu -13.16307 -72.54513 contextual n/a n/a n/a 1400 1466 1533 Dates (CE) taken from Table S1 A B2(ai2) Q1b1a1a tooth_molar 1 MP27 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 n/a 491322 n/a 1.550242472444157e-2 0.010957 7.00059e-15 ANGSD[v0.935] Nr Snps (per library): 950. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB62808;ERS15565544;ERR11518499 n/a n/a n/a n/a MP27 MP27 0.004238238919325001 0.005139567667025001 0.47149221085200105 0.459036545037357 +MP31A_MNT U Urubamba Valley;Cusco;Machu Picchu n/a n/a n/a n/a n/a ANTPA003179;Machu Picchu Cemetery 2 Peru PE Urubamba Valley;Cusco Machu Picchu -13.16307 -72.54513 C14 UCIAMS-222475 455 20 n/a n/a n/a Calibration was done using a mixed calibration curve: Mixed (IntCal20, SHCal20) A2ac(2) n/a tooth_molar 1 MP31A 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 n/a 123561 n/a 6.6287817003868954e-3 0.131479 4.291985e-15 ANGSD[v0.935] Nr Snps (per library): 123. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB62808;ERS15565545;ERR11518458 n/a n/a consistent with XX but not XY n/a MP31A MP31A 0.012641242441134001 0.000722265856795 0.858750043836036 0.0019108840002020002 +MP32_MNT U Urubamba Valley;Cusco;Machu Picchu n/a n/a n/a n/a n/a ANTPA003182;Machu Picchu Cemetery 2 Peru PE Urubamba Valley;Cusco Machu Picchu -13.16307 -72.54513 C14 UCIAMS-222468 385 20 n/a n/a n/a Calibration was done using a mixed calibration curve: Mixed (IntCal20, SHCal20) C1b3 Q1b1a1a tooth_molar 1 MP32 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 n/a 393180 n/a 5.311607758196318e-3 0.0036500000000000005 8.939433e-16 ANGSD[v0.935] Nr Snps (per library): 503. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB62808;ERS15565546;ERR11518466 n/a n/a n/a n/a MP32 MP32 0.003949152658001 0.00536733721096 0.37075461338922505 0.45156654606449004 +MP33_MNT M Urubamba Valley;Cusco;Machu Picchu n/a n/a n/a n/a n/a ANTPA003183;Machu Picchu Cemetery 2 Peru PE Urubamba Valley;Cusco Machu Picchu -13.16307 -72.54513 C14 UCIAMS-222465 485 15 n/a n/a n/a Calibration was done using a mixed calibration curve: Mixed (IntCal20, SHCal20) B2b(11a) Q1b tooth_molar 1 MP33 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 n/a 138071 n/a 5.43294883305978e-3 n/a n/a n/a Nr Snps (per library): 50. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB62808;ERS15565547;ERR11518465 n/a n/a n/a n/a MP33 MP33 0.0077834483964620005 0.010085939174196 0.383895191452286 0.42558425146330103 +MP3a_MNT U Urubamba Valley;Cusco;Machu Picchu n/a n/a n/a n/a n/a ANTPA3157;Machu Picchu Cemetery 1 Peru PE Urubamba Valley;Cusco Machu Picchu -13.16307 -72.54513 C14 UCIAMS-222466 205 15 n/a n/a n/a Calibration was done using a mixed calibration curve: Mixed (IntCal20, SHCal20) C1b2 n/a tooth_molar 1 MP3a 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 n/a 823881 n/a 1.1918032326575274e-2 0.194529 3.4320229999999995e-12 ANGSD[v0.935] Nr Snps (per library): 10240. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB62808;ERS15565548;ERR11518632 n/a n/a consistent with XX but not XY n/a MP3a MP3a 0.00340001727621 0.000377418568363 0.841309261792007 0.0070601472744030004 +MP42A_MNT F Urubamba Valley;Cusco;Machu Picchu n/a n/a n/a n/a n/a ANTPA003196;Machu Picchu Cemetery 2 Peru PE Urubamba Valley;Cusco Machu Picchu -13.16307 -72.54513 contextual n/a n/a n/a 1400 1466 1533 Dates (CE) taken from Table S1 A B2 n/a tooth_molar 1 MP42A 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 n/a 202726 n/a 4.730702553404049e-3 0.132978 0.0 ANGSD[v0.935] Nr Snps (per library): 293. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB62808;ERS15565549;ERR11518472 n/a n/a n/a n/a MP42A MP42A 0.009386810058029 0.000838784359079 0.816908084646033 0.004438150014125001 +MP42B_MNT U Urubamba Valley;Cusco;Machu Picchu n/a n/a n/a n/a n/a ANTPA003197;Machu Picchu Cemetery 2 Peru PE Urubamba Valley;Cusco Machu Picchu -13.16307 -72.54513 contextual n/a n/a n/a 1400 1466 1533 Dates (CE) taken from Table S1 A C1b n/a tooth_molar 1 MP42B 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 n/a 241300 n/a 3.91165750136527e-3 0.19811500000000004 3.121731e-14 ANGSD[v0.935] Nr Snps (per library): 507. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB62808;ERS15565550;ERR11518471 n/a n/a consistent with XX but not XY n/a MP42B MP42B 0.007940705001909 0.000755371948468 0.748361492416839 0.0045944485218970006 +MP42C_MNT F Urubamba Valley;Cusco;Machu Picchu n/a n/a n/a n/a n/a ANTPA003199.1;Machu Picchu Cemetery 2 Peru PE Urubamba Valley;Cusco Machu Picchu -13.16307 -72.54513 C14 UCIAMS-226330 515 20 n/a n/a n/a Calibration was done using a mixed calibration curve: Mixed (IntCal20, SHCal20) B2 n/a tooth_molar 1 MP42C 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 n/a 9121 n/a 5.64135110358931e-3 n/a n/a n/a Nr Snps (per library): 13. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB62808;ERS15565551;ERR11518469 n/a n/a n/a n/a MP42C MP42C 0.047177435809531 0.015674058514366002 0.9297673822627731 0.070026939009035 +MP45A_MNT M Urubamba Valley;Cusco;Machu Picchu n/a n/a n/a n/a n/a ANTPA000524;Machu Picchu Cemetery 1 Peru PE Urubamba Valley;Cusco Machu Picchu -13.16307 -72.54513 C14 UCIAMS-222470 390 15 n/a n/a n/a Calibration was done using a mixed calibration curve: Mixed (IntCal20, SHCal20) B2 Q1b1a1a tooth_molar 1 MP45A 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 n/a 334116 n/a 4.479947134680233e-3 0.001467 1.0237810000000001e-16 ANGSD[v0.935] Nr Snps (per library): 388. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB62808;ERS15565552;ERR11518475 n/a n/a n/a n/a MP45A MP45A 0.004319270440153 0.006010179861037 0.366601964484958 0.46773590824064804 +MP48B_MNT M Urubamba Valley;Cusco;Machu Picchu n/a n/a n/a n/a n/a ANTPA003205;Machu Picchu Cemetery 1 Peru PE Urubamba Valley;Cusco Machu Picchu -13.16307 -72.54513 C14 UCIAMS-222467 425 20 n/a n/a n/a Calibration was done using a mixed calibration curve: Mixed (IntCal20, SHCal20) D1f n/a tooth_molar 1 MP48B 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 n/a 188504 n/a 5.534855457838533e-3 n/a n/a n/a Nr Snps (per library): 94. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB62808;ERS15565553;ERR11518477 n/a n/a n/a n/a MP48B MP48B 0.006963916579501001 0.00889868180397 0.42227579851600106 0.45558255231397604 +MP4B_MNT F Urubamba Valley;Cusco;Machu Picchu n/a n/a n/a n/a n/a ANTPA003158.2:Machu Picchu Cemetery 1 Peru PE Urubamba Valley;Cusco Machu Picchu -13.16307 -72.54513 C14 UCIAMS-222471 350 20 n/a n/a n/a Calibration was done using a mixed calibration curve: Mixed (IntCal20, SHCal20) A2-64 n/a tooth_molar 1 MP4B 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 n/a 347787 n/a 5.7000939108468665e-3 0.190019 8.464114e-14 ANGSD[v0.935] Nr Snps (per library): 1124. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB62808;ERS15565554;ERR11518478 n/a n/a n/a n/a MP4B MP4B 0.006629475021368 0.000527246325848 0.8127356473505201 0.0034971828473850004 +MP4D_MNT F Urubamba Valley;Cusco;Machu Picchu n/a n/a n/a n/a n/a ANTPA003158.4;Machu Picchu Cemetery 1 Peru PE Urubamba Valley;Cusco Machu Picchu -13.16307 -72.54513 contextual n/a n/a n/a 1400 1466 1533 Dates (CE) taken from Table S1 A B2b+152 n/a tooth_pre-molar) 1 MP4D 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 n/a 200715 n/a 6.081615277017576e-3 0.153085 1.3675280000000001e-14 ANGSD[v0.935] Nr Snps (per library): 334. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB62808;ERS15565555;ERR11518481 n/a n/a n/a n/a MP4D MP4D 0.008862137888673 0.0006841280220920001 0.7564014903304851 0.0030593806521450003 +MP4E_MNT U Urubamba Valley;Cusco;Machu Picchu n/a n/a n/a n/a n/a ANTPA003158.5;Machu Picchu Cemetery 1 Peru PE Urubamba Valley;Cusco Machu Picchu -13.16307 -72.54513 contextual n/a n/a n/a 1400 1466 1533 Dates (CE) taken from Table S1 A B2 n/a tooth_molar 1 MP4E 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 n/a 62548 n/a 6.890256102440977e-3 n/a n/a n/a Nr Snps (per library): 48. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB62808;ERS15565556;ERR11518480 n/a n/a consistent with XX but not XY n/a MP4E MP4E 0.017649484760763 0.002513545609982 0.834117586212837 0.011516630258579 +MP4f_MNT F Urubamba Valley;Cusco;Machu Picchu n/a n/a n/a n/a n/a ANTPA003158.6;Machu Picchu Cemetery 1 Peru PE Urubamba Valley;Cusco Machu Picchu -13.16307 -72.54513 C14 UCIAMS-222472 540 20 n/a n/a n/a Calibration was done using a mixed calibration curve: Mixed (IntCal20, SHCal20) A2-64 n/a tooth_molar 1 MP4f 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 n/a 409310 n/a 4.31636272188836e-2 0.163765 4.197163e-13 ANGSD[v0.935] Nr Snps (per library): 2897. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB62808;ERS15565557;ERR11518485 n/a n/a n/a n/a MP4f MP4f 0.007050390305888001 0.000608907112929 1.20406993664454 0.006209111208717 +MP4i_MNT M Urubamba Valley;Cusco;Machu Picchu n/a n/a n/a n/a n/a ANTPA3159;Machu Picchu Cemetery 1 Peru PE Urubamba Valley;Cusco Machu Picchu -13.16307 -72.54513 C14 UCIAMS-222474 540 15 n/a n/a n/a Calibration was done using a mixed calibration curve: Mixed (IntCal20, SHCal20) B2 Q1b1a1a1h1 tooth_molar 1 MP4i 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 n/a 338161 n/a 4.347553396508273e-3 -0.000465 3.549831e-17 ANGSD[v0.935] Nr Snps (per library): 269. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB62808;ERS15565558;ERR11518489 n/a n/a n/a n/a MP4i MP4i 0.004806394014325001 0.006271107658550001 0.40573776908872405 0.45604887037156605 +MP50A_MNT U Urubamba Valley;Cusco;Machu Picchu n/a n/a n/a n/a n/a ANTPA003207.2;Machu Picchu Cemetery 3 Peru PE Urubamba Valley;Cusco Machu Picchu -13.16307 -72.54513 contextual n/a n/a n/a 1400 1466 1533 Dates (CE) taken from Table S1 A B2 n/a tooth_molar 1 MP50A 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 n/a 91116 n/a 6.2499238557035125e-3 n/a n/a n/a Nr Snps (per library): 55. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB62808;ERS15565559;ERR11518484 n/a n/a consistent with XX but not XY n/a MP50A MP50A 0.013937034017344 0.0014402789807490002 0.76916788602259 0.005577734855979 MP51_MNT F Urubamba Valley;Cusco;Machu Picchu n/a n/a n/a n/a n/a ANTPA003210;Machu Picchu Cemetery 3 Peru PE Urubamba Valley;Cusco Machu Picchu -13.16307 -72.54513 C14 UCIAMS-226317 420 20 n/a n/a n/a Calibration was done using a mixed calibration curve: Mixed (IntCal20, SHCal20) C1(b23) Q1b1a1a1i Pars pertosa 1 MP51 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 n/a 559518 n/a 7.3658834764122345e-3 0.006257 6.045532e-15 ANGSD[v0.935] Nr Snps (per library): 1764. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB62808;ERS15565560;ERR11518493 n/a n/a n/a n/a MP51 MP51 0.002530589440578 0.0038414721324040004 0.360248178699197 0.5456833222600971 -MP53A_MNT F Urubamba Valley;Cusco;Machu Picchu n/a n/a n/a n/a n/a ANTPA003214.1;Machu Picchu Cemetery 3 Peru PE Urubamba Valley;Cusco Machu Picchu -13.16307 -72.54513 contextual n/a n/a n/a 1400 1466 1533 Dates (CE) taken from Table S1 A n/a Q1b1 Tooth (molar) 1 MP53A 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 n/a 25932 n/a 3.874975981553834e-3 n/a n/a n/a Nr Snps (per library): 4. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB62808;ERS15565561;ERR11518486 n/a n/a n/a n/a MP53A MP53A 0.018860098153726003 0.023825911864720002 0.403630013494757 0.42563983308242603 -MP55_MNT F Urubamba Valley;Cusco;Machu Picchu n/a n/a n/a n/a n/a ANTPA000525;Machu Picchu Cemetery 3 Peru PE Urubamba Valley;Cusco Machu Picchu -13.16307 -72.54513 C14 UCIAMS-226324 400 20 n/a n/a n/a Calibration was done using a mixed calibration curve: Mixed (IntCal20, SHCal20) B2 n/a Tooth (molar) 1 MP55 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 n/a 40767 n/a 8.555505347190842e-3 n/a n/a n/a Nr Snps (per library): 10. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB62808;ERS15565562;ERR11518487 n/a n/a n/a n/a MP55 MP55 0.014174036813574 0.018591011238545 0.35750491803446405 0.405824952923776 -MP5A_MNT F Urubamba Valley;Cusco;Machu Picchu n/a n/a n/a n/a n/a 3160 Peru PE Urubamba Valley;Cusco Machu Picchu -13.16307 -72.54513 C14 UCIAMS-222473 550 20 n/a n/a n/a Calibration was done using a mixed calibration curve: Mixed (IntCal20, SHCal20) B2y n/a Tooth (molar) 1 MP5A 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 n/a 472573 n/a 3.943849926042175e-3 0.179871 6.221649e-13 ANGSD[v0.935] Nr Snps (per library): 2681. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB62808;ERS15565563;ERR11518495 n/a n/a n/a n/a MP5A MP5A 0.004491254235287 0.00045671252854500004 0.7312163420790451 0.0051262123764410005 -MP61_MNT F Urubamba Valley;Cusco;Machu Picchu n/a n/a n/a n/a n/a ANTPA003219;Machu Picchu Cemetery 2 Peru PE Urubamba Valley;Cusco Machu Picchu -13.16307 -72.54513 C14 UCIAMS-226322 415 25 n/a n/a n/a Calibration was done using a mixed calibration curve: Mixed (IntCal20, SHCal20) B2(ai) n/a Tooth (molar) 1 MP61 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 n/a 586814 n/a 3.224841722719989e-2 0.206484 6.854984e-13 ANGSD[v0.935] Nr Snps (per library): 6431. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB62808;ERS15565564;ERR11518546 n/a n/a n/a n/a MP61 MP61 0.005517075443115 0.00110271626241 0.9830141365346681 0.026887879293958004 -MP63_MNT M Urubamba Valley;Cusco;Machu Picchu n/a n/a n/a n/a n/a ANTPA003221;Machu Picchu Cemetery 1 Peru PE Urubamba Valley;Cusco Machu Picchu -13.16307 -72.54513 C14 UCIAMS-226323 375 20 n/a n/a n/a Calibration was done using a mixed calibration curve: Mixed (IntCal20, SHCal20) D1f Q1b1a1a1 Tooth (molar) 1 MP63 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 n/a 891013 n/a 1.3325567615044507e-2 0.005628 3.376317e-14 ANGSD[v0.935] Nr Snps (per library): 4310. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB62808;ERS15565565;ERR11518550 n/a n/a n/a n/a MP63 MP63 0.0022762152945850003 0.0029634204330160003 0.429355406082077 0.48064986806716303 -MP65B_MNT F Urubamba Valley;Cusco;Machu Picchu n/a n/a n/a n/a n/a ANTPA003222.2;Machu Picchu Cemetery 1 Peru PE Urubamba Valley;Cusco Machu Picchu -13.16307 -72.54513 C14 UCIAMS-226331 425 20 n/a n/a n/a Calibration was done using a mixed calibration curve: Mixed (IntCal20, SHCal20) n/a n/a Tooth (molar) 1 MP65B 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 n/a 18227 n/a 4.855195911413969e-3 n/a n/a n/a Nr Snps (per library): 5. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB62808;ERS15565566;ERR11518496 n/a n/a n/a n/a MP65B MP65B 0.032599471338806 0.0034006697120370004 0.7961785531775081 0.0058896402967540005 -MP71_MNT F Urubamba Valley;Cusco;Machu Picchu n/a n/a n/a n/a n/a ANTPA003227;Machu Picchu Cemetery 3 Peru PE Urubamba Valley;Cusco Machu Picchu -13.16307 -72.54513 contextual n/a n/a n/a 1400 1466 1533 Dates (CE) taken from Table S1 A C1c Q1b1 Tooth (molar) 1 MP71 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 n/a 176095 n/a 5.201608714364157e-3 n/a n/a n/a Nr Snps (per library): 69. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB62808;ERS15565567;ERR11518498 n/a n/a n/a n/a MP71 MP71 0.006882952354015001 0.009182876491045001 0.39244237958368605 0.460888558918484 -MP77A_MNT F Urubamba Valley;Cusco;Machu Picchu n/a n/a n/a n/a n/a ANTPA003232.1;Machu Picchu Cemetery 3 Peru PE Urubamba Valley;Cusco Machu Picchu -13.16307 -72.54513 C14 UCIAMS-226329 470 20 n/a n/a n/a Calibration was done using a mixed calibration curve: Mixed (IntCal20, SHCal20) D1 n/a Tooth (molar) 1 MP77A 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 n/a 86248 n/a 4.909470503986718e-3 n/a n/a n/a Nr Snps (per library): 33. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB62808;ERS15565568;ERR11518500 n/a n/a n/a n/a MP77A MP77A 0.010695974880055002 0.013017594942628 0.43549996393431506 0.42680507545341706 -MP78A_MNT U Urubamba Valley;Cusco;Machu Picchu n/a n/a n/a n/a n/a ANTPA003236.1;Machu Picchu Cemetery 3 Peru PE Urubamba Valley;Cusco Machu Picchu -13.16307 -72.54513 C14 UCIAMS-226328 415 20 n/a n/a n/a Calibration was done using a mixed calibration curve: Mixed (IntCal20, SHCal20) D4h3a6 n/a Tooth (molar) 1 MP78A 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 n/a 49268 n/a 8.099414084938536e-3 n/a n/a n/a Nr Snps (per library): 36. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB62808;ERS15565569;ERR11518501 n/a n/a consistent with XX but not XY n/a MP78A MP78A 0.020222662855339 0.001571709292701 0.853739378389272 0.0035142734957680005 -MP80_MNT F Urubamba Valley;Cusco;Machu Picchu n/a n/a n/a n/a n/a ANTPA003235.1;Machu Picchu Cemetery 2 Peru PE Urubamba Valley;Cusco Machu Picchu -13.16307 -72.54513 C14 UCIAMS-226319 525 20 n/a n/a n/a Calibration was done using a mixed calibration curve: Mixed (IntCal20, SHCal20) n/a n/a Tooth (molar) 1 MP80 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 n/a 12520 n/a 5.538742648318392e-3 n/a n/a n/a Nr Snps (per library): 22. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB62808;ERS15565570;ERR11518503 n/a n/a n/a n/a MP80 MP80 0.042414187124963004 0.003665366879299 1.011846741984068 0.005183230165503001 -MP82_MNT U Urubamba Valley;Cusco;Machu Picchu n/a n/a n/a n/a n/a ANTPA003237.1;Machu Picchu Cemetery 2 Peru PE Urubamba Valley;Cusco Machu Picchu -13.16307 -72.54513 contextual n/a n/a n/a 1400 1466 1533 Dates (CE) taken from Table S1 A n/a n/a Tooth (molar) 1 MP82 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 n/a 1145 n/a 1.0314595152140279e-2 n/a n/a n/a Nr Snps (per library): 3. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB62808;ERS15565571;ERR11518502 n/a n/a consistent with XX but not XY n/a MP82 MP82 0.12705108054428602 0.036171845752062004 0.923977128928364 0.051117632764288004 -MP84A_MNT F Urubamba Valley;Cusco;Machu Picchu n/a n/a n/a n/a n/a ANTPA003238;Machu Picchu Cemetery 4 Peru PE Urubamba Valley;Cusco Machu Picchu -13.16307 -72.54513 C14 UCIAMS-226320 345 20 n/a n/a n/a Calibration was done using a mixed calibration curve: Mixed (IntCal20, SHCal20) C1b n/a Tooth (molar) 1 MP84A 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 n/a 184463 n/a 5.113034982495183e-3 n/a n/a n/a Nr Snps (per library): 67. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB62808;ERS15565572;ERR11518514 n/a n/a n/a n/a MP84A MP84A 0.006899419191171 0.008837561133462 0.40949592541469304 0.44383702036874906 -MP84C_MNT M Urubamba Valley;Cusco;Machu Picchu n/a n/a n/a n/a n/a ANTPA003239;Machu Picchu Cemetery 4 Peru PE Urubamba Valley;Cusco Machu Picchu -13.16307 -72.54513 C14 UCIAMS-226318 510 20 n/a n/a n/a Calibration was done using a mixed calibration curve: Mixed (IntCal20, SHCal20) C1b Q1b1 Tooth (caninus) 1 MP84C 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 n/a 151486 n/a 6.382174241831599e-3 n/a n/a n/a Nr Snps (per library): 48. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB62808;ERS15565573;ERR11518512 n/a n/a n/a n/a MP84C MP84C 0.007886520372032 0.009893460588501001 0.42632354628509606 0.443519799896656 -OTT-1144_MNT M Urubamba Valley;Cusco;Ollantaytambo n/a n/a n/a n/a n/a n/a Peru PE Urubamba Valley;Cusco Ollantaytambo -13.25837 -72.26427 C14 UCIAMS-222478 955 20 n/a n/a n/a Calibration was done using a mixed calibration curve: Mixed (IntCal20, SHCal20) C1b Q1b1a1a1h1a Tooth (molar) 1 OTT-1144 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 n/a 791691 n/a 2.7626985056485283e-3 0.000359 3.7811870000000006e-16 ANGSD[v0.935] Nr Snps (per library): 2836. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB62808;ERS15565575;ERR11518523 n/a n/a n/a n/a OTT-1144 OTT-1144 0.002349161643252 0.0032751908640910004 0.400940000372744 0.513634376676942 -OTT-1160_MNT M Urubamba Valley;Cusco;Ollantaytambo n/a n/a n/a n/a n/a n/a Peru PE Urubamba Valley;Cusco Ollantaytambo -13.25837 -72.26427 contextual n/a n/a n/a 1030 1210 1390 Dates (CE) taken from Table S1 A D1 Q1b1a1a1h1a Tooth (molar) 1 OTT-1160 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 n/a 812661 n/a 2.9411918259703474e-3 -0.000389 1.067382e-15 ANGSD[v0.935] Nr Snps (per library): 3060. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB62808;ERS15565576;ERR11518538 n/a n/a n/a n/a OTT-1160 OTT-1160 0.002070153047431 0.002825580559522 0.36672041027198504 0.45041245804593105 -OTT-1165_MNT F Urubamba Valley;Cusco;Ollantaytambo n/a n/a n/a n/a n/a n/a Peru PE Urubamba Valley;Cusco Ollantaytambo -13.25837 -72.26427 C14 UCIAMS-222479 695 20 n/a n/a n/a Calibration was done using a mixed calibration curve: Mixed (IntCal20, SHCal20) A2 n/a Tooth (molar) 1 OTT-1165 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 n/a 577498 n/a 3.6891346551128873e-3 0.184909 1.768914e-13 ANGSD[v0.935] Nr Snps (per library): 3239. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB62808;ERS15565577;ERR11518543 n/a n/a n/a n/a OTT-1165 OTT-1165 0.0045442473449390005 0.000559339892356 0.814000871247429 0.008389099340775 -OTT-1174_MNT F Urubamba Valley;Cusco;Ollantaytambo n/a n/a n/a n/a n/a n/a Peru PE Urubamba Valley;Cusco Ollantaytambo -13.25837 -72.26427 contextual n/a n/a n/a 1030 1210 1390 Dates (CE) taken from Table S1 A B2 n/a Tooth (molar) 1 OTT-1174 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 n/a 645884 n/a 6.179289243497864e-3 0.169155 3.212559e-13 ANGSD[v0.935] Nr Snps (per library): 3958. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB62808;ERS15565578;ERR11518552 n/a n/a n/a n/a OTT-1174 OTT-1174 0.004215964445109 0.00039475052434700004 0.810663914152972 0.004834355027831001 -OTT-1187_MNT M Urubamba Valley;Cusco;Ollantaytambo n/a n/a n/a n/a n/a n/a Peru PE Urubamba Valley;Cusco Ollantaytambo -13.25837 -72.26427 contextual n/a n/a n/a 1030 1210 1390 Dates (CE) taken from Table S1 A D1 Q1b1a1a1h1a Tooth (molar) 1 OTT-1187 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 n/a 862375 n/a 2.5717144583044353e-3 0.001133 2.895274e-15 ANGSD[v0.935] Nr Snps (per library): 3586. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB62808;ERS15565579;ERR11518565 n/a n/a n/a n/a OTT-1187 OTT-1187 0.002119446580436 0.002930257413474 0.396426632843546 0.49951109222370205 -QKI-21-1_MNT M Cusco City;Cusco;Qotakalli n/a n/a n/a n/a n/a n/a Peru PE Cusco City;Cusco Qotakalli -13.54584 -71.94507 C14 UCIAMS-213832 365 15 n/a n/a n/a Calibration was done using a mixed calibration curve: Mixed (IntCal20, SHCal20) C1b Q1b1a1a Tooth (molar) 1 QKI-21-1 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 n/a 223818 n/a 9.445622991439724e-3 -0.001561 1.923901e-17 ANGSD[v0.935] Nr Snps (per library): 124. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB62808;ERS15565580;ERR11518553 n/a n/a n/a n/a QKI-21-1 QKI-21-1 0.006040666296709 0.008099587304464001 0.39819212285070404 0.47231079775400103 -QKI-4_MNT F Cusco City;Cusco;Qotakalli n/a n/a n/a n/a n/a n/a Peru PE Cusco City;Cusco Qotakalli -13.54584 -71.94507 C14 UCIAMS-213833 505 15 n/a n/a n/a Calibration was done using a mixed calibration curve: Mixed (IntCal20, SHCal20) B2b n/a Tooth (molar) 1 QKI-4 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 n/a 759921 n/a 6.588081784666931e-3 0.187312 4.220895e-13 ANGSD[v0.935] Nr Snps (per library): 6021. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB62808;ERS15565581;ERR11518562 n/a n/a n/a n/a QKI-4 QKI-4 0.0035805998881240004 0.00031640054362800003 0.820710950656919 0.0043610105327870005 -QKI-809_MNT M Cusco City;Cusco;Qotakalli n/a n/a n/a n/a n/a n/a Peru PE Cusco City;Cusco Qotakalli -13.54584 -71.94507 contextual n/a n/a n/a 1414 1468 1533 Dates (CE) taken from Table S1 A B2b Q1b1a1a1 Tooth (molar) 1 QKI-809 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 n/a 842016 n/a 4.247457661617411e-3 0.0009500000000000001 2.060746e-15 ANGSD[v0.935] Nr Snps (per library): 3359. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB62808;ERS15565582;ERR11518566 n/a n/a n/a n/a QKI-809 QKI-809 0.0022900295989400003 0.0030611022251650004 0.418482631377865 0.493454250174966 -QKI-9-3_MNT F Cusco City;Cusco;Qotakalli n/a n/a n/a n/a n/a n/a Peru PE Cusco City;Cusco Qotakalli -13.54584 -71.94507 contextual n/a n/a n/a 1414 1468 1534 Dates (CE) taken from Table S1 A B2 n/a Tooth (molar) 1 QKI-9-3 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 n/a 582053 n/a 5.641235420716956e-3 0.190242 1.570828e-14 ANGSD[v0.935] Nr Snps (per library): 3204. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB62808;ERS15565583;ERR11518572 n/a n/a n/a n/a QKI-9-3 QKI-9-3 0.004426672620273 0.00042480725332800004 0.7857627247491431 0.004917156243587 -SHN-212_MNT M Cusco City;Cusco;Sacsahuaman n/a n/a n/a n/a n/a n/a Peru PE Cusco City;Cusco Sacsahuaman -13.50986 -71.98169 C14 UCIAMS-222482 450 15 n/a n/a n/a Calibration was done using a mixed calibration curve: Mixed (IntCal20, SHCal20) B2 n/a Tooth (molar) 1 SHN-212 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 n/a 136370 n/a 7.440519667708729e-3 n/a n/a n/a Nr Snps (per library): 41. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB62808;ERS15565584;ERR11518568 n/a n/a n/a n/a SHN-212 SHN-212 0.008011036244357 0.010998330653995001 0.398496200915245 0.49522924833652104 -SHN-355_MNT M Cusco City;Cusco;Sacsahuaman n/a n/a n/a n/a n/a n/a Peru PE Cusco City;Cusco Sacsahuaman -13.50986 -71.98169 contextual n/a n/a n/a 1400 1466 1533 Dates (CE) taken from Table S1 A B2b Q1b1a1a1i Tooth (molar) 1 SHN-355 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 n/a 763022 n/a 3.5023978847838807e-3 0.007062 1.549537e-14 ANGSD[v0.935] Nr Snps (per library): 2450. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB62808;ERS15565585;ERR11518578 n/a n/a n/a n/a SHN-355 SHN-355 0.002538170805281 0.0033548492075770003 0.41562188743068 0.47931167589023405 -SHN-492_MNT F Cusco City;Cusco;Sacsahuaman n/a n/a n/a n/a n/a n/a Peru PE Cusco City;Cusco Sacsahuaman -13.50986 -71.98169 contextual n/a n/a n/a 1400 1466 1533 Dates (CE) taken from Table S1 A B2 n/a Tooth (molar) 1 SHN-492 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 n/a 619537 n/a 5.3044208249740325e-3 0.168898 4.167879e-13 ANGSD[v0.935] Nr Snps (per library): 3415. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB62808;ERS15565586;ERR11518582 n/a n/a n/a n/a SHN-492 SHN-492 0.004321895941449 0.00041992200936200004 0.785494195695924 0.005038703697934001 -SHN-575_MNT M Cusco City;Cusco;Sacsahuaman n/a n/a n/a n/a n/a n/a Peru PE Cusco City;Cusco Sacsahuaman -13.50986 -71.98169 contextual n/a n/a n/a 1400 1466 1533 Dates (CE) taken from Table S1 A A2+(64) Q1b1a2 Tooth (molar) 1 SHN-575 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 n/a 879218 n/a 5.988679473539485e-3 0.006083 3.38414e-14 ANGSD[v0.935] Nr Snps (per library): 4670. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB62808;ERS15565587;ERR11518597 n/a n/a n/a n/a SHN-575 SHN-575 0.001977256985031 0.002653676019828 0.409935706178905 0.48719175600644604 -SHN-902_MNT F Cusco City;Cusco;Sacsahuaman n/a n/a n/a n/a n/a n/a Peru PE Cusco City;Cusco Sacsahuaman -13.50986 -71.98169 contextual n/a n/a n/a 1400 1466 1533 Dates (CE) taken from Table S1 A D1h n/a Tooth (molar) 1 SHN-902 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 n/a 327344 n/a 7.058316148176045e-3 0.185285 6.380789e-14 ANGSD[v0.935] Nr Snps (per library): 916. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB62808;ERS15565588;ERR11518584 n/a n/a n/a n/a SHN-902 SHN-902 0.006839695315628 0.0007178577511500001 0.7962545374461061 0.005962469648282001 +MP53A_MNT F Urubamba Valley;Cusco;Machu Picchu n/a n/a n/a n/a n/a ANTPA003214.1;Machu Picchu Cemetery 3 Peru PE Urubamba Valley;Cusco Machu Picchu -13.16307 -72.54513 contextual n/a n/a n/a 1400 1466 1533 Dates (CE) taken from Table S1 A n/a Q1b1 tooth_molar 1 MP53A 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 n/a 25932 n/a 3.874975981553834e-3 n/a n/a n/a Nr Snps (per library): 4. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB62808;ERS15565561;ERR11518486 n/a n/a n/a n/a MP53A MP53A 0.018860098153726003 0.023825911864720002 0.403630013494757 0.42563983308242603 +MP55_MNT F Urubamba Valley;Cusco;Machu Picchu n/a n/a n/a n/a n/a ANTPA000525;Machu Picchu Cemetery 3 Peru PE Urubamba Valley;Cusco Machu Picchu -13.16307 -72.54513 C14 UCIAMS-226324 400 20 n/a n/a n/a Calibration was done using a mixed calibration curve: Mixed (IntCal20, SHCal20) B2 n/a tooth_molar 1 MP55 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 n/a 40767 n/a 8.555505347190842e-3 n/a n/a n/a Nr Snps (per library): 10. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB62808;ERS15565562;ERR11518487 n/a n/a n/a n/a MP55 MP55 0.014174036813574 0.018591011238545 0.35750491803446405 0.405824952923776 +MP5A_MNT F Urubamba Valley;Cusco;Machu Picchu n/a n/a n/a n/a n/a 3160 Peru PE Urubamba Valley;Cusco Machu Picchu -13.16307 -72.54513 C14 UCIAMS-222473 550 20 n/a n/a n/a Calibration was done using a mixed calibration curve: Mixed (IntCal20, SHCal20) B2y n/a tooth_molar 1 MP5A 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 n/a 472573 n/a 3.943849926042175e-3 0.179871 6.221649e-13 ANGSD[v0.935] Nr Snps (per library): 2681. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB62808;ERS15565563;ERR11518495 n/a n/a n/a n/a MP5A MP5A 0.004491254235287 0.00045671252854500004 0.7312163420790451 0.0051262123764410005 +MP61_MNT F Urubamba Valley;Cusco;Machu Picchu n/a n/a n/a n/a n/a ANTPA003219;Machu Picchu Cemetery 2 Peru PE Urubamba Valley;Cusco Machu Picchu -13.16307 -72.54513 C14 UCIAMS-226322 415 25 n/a n/a n/a Calibration was done using a mixed calibration curve: Mixed (IntCal20, SHCal20) B2(ai) n/a tooth_molar 1 MP61 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 n/a 586814 n/a 3.224841722719989e-2 0.206484 6.854984e-13 ANGSD[v0.935] Nr Snps (per library): 6431. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB62808;ERS15565564;ERR11518546 n/a n/a n/a n/a MP61 MP61 0.005517075443115 0.00110271626241 0.9830141365346681 0.026887879293958004 +MP63_MNT M Urubamba Valley;Cusco;Machu Picchu n/a n/a n/a n/a n/a ANTPA003221;Machu Picchu Cemetery 1 Peru PE Urubamba Valley;Cusco Machu Picchu -13.16307 -72.54513 C14 UCIAMS-226323 375 20 n/a n/a n/a Calibration was done using a mixed calibration curve: Mixed (IntCal20, SHCal20) D1f Q1b1a1a1 tooth_molar 1 MP63 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 n/a 891013 n/a 1.3325567615044507e-2 0.005628 3.376317e-14 ANGSD[v0.935] Nr Snps (per library): 4310. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB62808;ERS15565565;ERR11518550 n/a n/a n/a n/a MP63 MP63 0.0022762152945850003 0.0029634204330160003 0.429355406082077 0.48064986806716303 +MP65B_MNT F Urubamba Valley;Cusco;Machu Picchu n/a n/a n/a n/a n/a ANTPA003222.2;Machu Picchu Cemetery 1 Peru PE Urubamba Valley;Cusco Machu Picchu -13.16307 -72.54513 C14 UCIAMS-226331 425 20 n/a n/a n/a Calibration was done using a mixed calibration curve: Mixed (IntCal20, SHCal20) n/a n/a tooth_molar 1 MP65B 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 n/a 18227 n/a 4.855195911413969e-3 n/a n/a n/a Nr Snps (per library): 5. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB62808;ERS15565566;ERR11518496 n/a n/a n/a n/a MP65B MP65B 0.032599471338806 0.0034006697120370004 0.7961785531775081 0.0058896402967540005 +MP71_MNT F Urubamba Valley;Cusco;Machu Picchu n/a n/a n/a n/a n/a ANTPA003227;Machu Picchu Cemetery 3 Peru PE Urubamba Valley;Cusco Machu Picchu -13.16307 -72.54513 contextual n/a n/a n/a 1400 1466 1533 Dates (CE) taken from Table S1 A C1c Q1b1 tooth_molar 1 MP71 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 n/a 176095 n/a 5.201608714364157e-3 n/a n/a n/a Nr Snps (per library): 69. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB62808;ERS15565567;ERR11518498 n/a n/a n/a n/a MP71 MP71 0.006882952354015001 0.009182876491045001 0.39244237958368605 0.460888558918484 +MP77A_MNT F Urubamba Valley;Cusco;Machu Picchu n/a n/a n/a n/a n/a ANTPA003232.1;Machu Picchu Cemetery 3 Peru PE Urubamba Valley;Cusco Machu Picchu -13.16307 -72.54513 C14 UCIAMS-226329 470 20 n/a n/a n/a Calibration was done using a mixed calibration curve: Mixed (IntCal20, SHCal20) D1 n/a tooth_molar 1 MP77A 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 n/a 86248 n/a 4.909470503986718e-3 n/a n/a n/a Nr Snps (per library): 33. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB62808;ERS15565568;ERR11518500 n/a n/a n/a n/a MP77A MP77A 0.010695974880055002 0.013017594942628 0.43549996393431506 0.42680507545341706 +MP78A_MNT U Urubamba Valley;Cusco;Machu Picchu n/a n/a n/a n/a n/a ANTPA003236.1;Machu Picchu Cemetery 3 Peru PE Urubamba Valley;Cusco Machu Picchu -13.16307 -72.54513 C14 UCIAMS-226328 415 20 n/a n/a n/a Calibration was done using a mixed calibration curve: Mixed (IntCal20, SHCal20) D4h3a6 n/a tooth_molar 1 MP78A 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 n/a 49268 n/a 8.099414084938536e-3 n/a n/a n/a Nr Snps (per library): 36. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB62808;ERS15565569;ERR11518501 n/a n/a consistent with XX but not XY n/a MP78A MP78A 0.020222662855339 0.001571709292701 0.853739378389272 0.0035142734957680005 +MP80_MNT F Urubamba Valley;Cusco;Machu Picchu n/a n/a n/a n/a n/a ANTPA003235.1;Machu Picchu Cemetery 2 Peru PE Urubamba Valley;Cusco Machu Picchu -13.16307 -72.54513 C14 UCIAMS-226319 525 20 n/a n/a n/a Calibration was done using a mixed calibration curve: Mixed (IntCal20, SHCal20) n/a n/a tooth_molar 1 MP80 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 n/a 12520 n/a 5.538742648318392e-3 n/a n/a n/a Nr Snps (per library): 22. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB62808;ERS15565570;ERR11518503 n/a n/a n/a n/a MP80 MP80 0.042414187124963004 0.003665366879299 1.011846741984068 0.005183230165503001 +MP82_MNT U Urubamba Valley;Cusco;Machu Picchu n/a n/a n/a n/a n/a ANTPA003237.1;Machu Picchu Cemetery 2 Peru PE Urubamba Valley;Cusco Machu Picchu -13.16307 -72.54513 contextual n/a n/a n/a 1400 1466 1533 Dates (CE) taken from Table S1 A n/a n/a tooth_molar 1 MP82 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 n/a 1145 n/a 1.0314595152140279e-2 n/a n/a n/a Nr Snps (per library): 3. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB62808;ERS15565571;ERR11518502 n/a n/a consistent with XX but not XY n/a MP82 MP82 0.12705108054428602 0.036171845752062004 0.923977128928364 0.051117632764288004 +MP84A_MNT F Urubamba Valley;Cusco;Machu Picchu n/a n/a n/a n/a n/a ANTPA003238;Machu Picchu Cemetery 4 Peru PE Urubamba Valley;Cusco Machu Picchu -13.16307 -72.54513 C14 UCIAMS-226320 345 20 n/a n/a n/a Calibration was done using a mixed calibration curve: Mixed (IntCal20, SHCal20) C1b n/a tooth_molar 1 MP84A 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 n/a 184463 n/a 5.113034982495183e-3 n/a n/a n/a Nr Snps (per library): 67. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB62808;ERS15565572;ERR11518514 n/a n/a n/a n/a MP84A MP84A 0.006899419191171 0.008837561133462 0.40949592541469304 0.44383702036874906 +MP84C_MNT M Urubamba Valley;Cusco;Machu Picchu n/a n/a n/a n/a n/a ANTPA003239;Machu Picchu Cemetery 4 Peru PE Urubamba Valley;Cusco Machu Picchu -13.16307 -72.54513 C14 UCIAMS-226318 510 20 n/a n/a n/a Calibration was done using a mixed calibration curve: Mixed (IntCal20, SHCal20) C1b Q1b1 tooth_caninus) 1 MP84C 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 n/a 151486 n/a 6.382174241831599e-3 n/a n/a n/a Nr Snps (per library): 48. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB62808;ERS15565573;ERR11518512 n/a n/a n/a n/a MP84C MP84C 0.007886520372032 0.009893460588501001 0.42632354628509606 0.443519799896656 +OTT-1144_MNT M Urubamba Valley;Cusco;Ollantaytambo n/a n/a n/a n/a n/a n/a Peru PE Urubamba Valley;Cusco Ollantaytambo -13.25837 -72.26427 C14 UCIAMS-222478 955 20 n/a n/a n/a Calibration was done using a mixed calibration curve: Mixed (IntCal20, SHCal20) C1b Q1b1a1a1h1a tooth_molar 1 OTT-1144 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 n/a 791691 n/a 2.7626985056485283e-3 0.000359 3.7811870000000006e-16 ANGSD[v0.935] Nr Snps (per library): 2836. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB62808;ERS15565575;ERR11518523 n/a n/a n/a n/a OTT-1144 OTT-1144 0.002349161643252 0.0032751908640910004 0.400940000372744 0.513634376676942 +OTT-1160_MNT M Urubamba Valley;Cusco;Ollantaytambo n/a n/a n/a n/a n/a n/a Peru PE Urubamba Valley;Cusco Ollantaytambo -13.25837 -72.26427 contextual n/a n/a n/a 1030 1210 1390 Dates (CE) taken from Table S1 A D1 Q1b1a1a1h1a tooth_molar 1 OTT-1160 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 n/a 812661 n/a 2.9411918259703474e-3 -0.000389 1.067382e-15 ANGSD[v0.935] Nr Snps (per library): 3060. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB62808;ERS15565576;ERR11518538 n/a n/a n/a n/a OTT-1160 OTT-1160 0.002070153047431 0.002825580559522 0.36672041027198504 0.45041245804593105 +OTT-1165_MNT F Urubamba Valley;Cusco;Ollantaytambo n/a n/a n/a n/a n/a n/a Peru PE Urubamba Valley;Cusco Ollantaytambo -13.25837 -72.26427 C14 UCIAMS-222479 695 20 n/a n/a n/a Calibration was done using a mixed calibration curve: Mixed (IntCal20, SHCal20) A2 n/a tooth_molar 1 OTT-1165 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 n/a 577498 n/a 3.6891346551128873e-3 0.184909 1.768914e-13 ANGSD[v0.935] Nr Snps (per library): 3239. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB62808;ERS15565577;ERR11518543 n/a n/a n/a n/a OTT-1165 OTT-1165 0.0045442473449390005 0.000559339892356 0.814000871247429 0.008389099340775 +OTT-1174_MNT F Urubamba Valley;Cusco;Ollantaytambo n/a n/a n/a n/a n/a n/a Peru PE Urubamba Valley;Cusco Ollantaytambo -13.25837 -72.26427 contextual n/a n/a n/a 1030 1210 1390 Dates (CE) taken from Table S1 A B2 n/a tooth_molar 1 OTT-1174 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 n/a 645884 n/a 6.179289243497864e-3 0.169155 3.212559e-13 ANGSD[v0.935] Nr Snps (per library): 3958. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB62808;ERS15565578;ERR11518552 n/a n/a n/a n/a OTT-1174 OTT-1174 0.004215964445109 0.00039475052434700004 0.810663914152972 0.004834355027831001 +OTT-1187_MNT M Urubamba Valley;Cusco;Ollantaytambo n/a n/a n/a n/a n/a n/a Peru PE Urubamba Valley;Cusco Ollantaytambo -13.25837 -72.26427 contextual n/a n/a n/a 1030 1210 1390 Dates (CE) taken from Table S1 A D1 Q1b1a1a1h1a tooth_molar 1 OTT-1187 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 n/a 862375 n/a 2.5717144583044353e-3 0.001133 2.895274e-15 ANGSD[v0.935] Nr Snps (per library): 3586. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB62808;ERS15565579;ERR11518565 n/a n/a n/a n/a OTT-1187 OTT-1187 0.002119446580436 0.002930257413474 0.396426632843546 0.49951109222370205 +QKI-21-1_MNT M Cusco City;Cusco;Qotakalli n/a n/a n/a n/a n/a n/a Peru PE Cusco City;Cusco Qotakalli -13.54584 -71.94507 C14 UCIAMS-213832 365 15 n/a n/a n/a Calibration was done using a mixed calibration curve: Mixed (IntCal20, SHCal20) C1b Q1b1a1a tooth_molar 1 QKI-21-1 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 n/a 223818 n/a 9.445622991439724e-3 -0.001561 1.923901e-17 ANGSD[v0.935] Nr Snps (per library): 124. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB62808;ERS15565580;ERR11518553 n/a n/a n/a n/a QKI-21-1 QKI-21-1 0.006040666296709 0.008099587304464001 0.39819212285070404 0.47231079775400103 +QKI-4_MNT F Cusco City;Cusco;Qotakalli n/a n/a n/a n/a n/a n/a Peru PE Cusco City;Cusco Qotakalli -13.54584 -71.94507 C14 UCIAMS-213833 505 15 n/a n/a n/a Calibration was done using a mixed calibration curve: Mixed (IntCal20, SHCal20) B2b n/a tooth_molar 1 QKI-4 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 n/a 759921 n/a 6.588081784666931e-3 0.187312 4.220895e-13 ANGSD[v0.935] Nr Snps (per library): 6021. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB62808;ERS15565581;ERR11518562 n/a n/a n/a n/a QKI-4 QKI-4 0.0035805998881240004 0.00031640054362800003 0.820710950656919 0.0043610105327870005 +QKI-809_MNT M Cusco City;Cusco;Qotakalli n/a n/a n/a n/a n/a n/a Peru PE Cusco City;Cusco Qotakalli -13.54584 -71.94507 contextual n/a n/a n/a 1414 1468 1533 Dates (CE) taken from Table S1 A B2b Q1b1a1a1 tooth_molar 1 QKI-809 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 n/a 842016 n/a 4.247457661617411e-3 0.0009500000000000001 2.060746e-15 ANGSD[v0.935] Nr Snps (per library): 3359. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB62808;ERS15565582;ERR11518566 n/a n/a n/a n/a QKI-809 QKI-809 0.0022900295989400003 0.0030611022251650004 0.418482631377865 0.493454250174966 +QKI-9-3_MNT F Cusco City;Cusco;Qotakalli n/a n/a n/a n/a n/a n/a Peru PE Cusco City;Cusco Qotakalli -13.54584 -71.94507 contextual n/a n/a n/a 1414 1468 1534 Dates (CE) taken from Table S1 A B2 n/a tooth_molar 1 QKI-9-3 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 n/a 582053 n/a 5.641235420716956e-3 0.190242 1.570828e-14 ANGSD[v0.935] Nr Snps (per library): 3204. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB62808;ERS15565583;ERR11518572 n/a n/a n/a n/a QKI-9-3 QKI-9-3 0.004426672620273 0.00042480725332800004 0.7857627247491431 0.004917156243587 +SHN-212_MNT M Cusco City;Cusco;Sacsahuaman n/a n/a n/a n/a n/a n/a Peru PE Cusco City;Cusco Sacsahuaman -13.50986 -71.98169 C14 UCIAMS-222482 450 15 n/a n/a n/a Calibration was done using a mixed calibration curve: Mixed (IntCal20, SHCal20) B2 n/a tooth_molar 1 SHN-212 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 n/a 136370 n/a 7.440519667708729e-3 n/a n/a n/a Nr Snps (per library): 41. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB62808;ERS15565584;ERR11518568 n/a n/a n/a n/a SHN-212 SHN-212 0.008011036244357 0.010998330653995001 0.398496200915245 0.49522924833652104 +SHN-355_MNT M Cusco City;Cusco;Sacsahuaman n/a n/a n/a n/a n/a n/a Peru PE Cusco City;Cusco Sacsahuaman -13.50986 -71.98169 contextual n/a n/a n/a 1400 1466 1533 Dates (CE) taken from Table S1 A B2b Q1b1a1a1i tooth_molar 1 SHN-355 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 n/a 763022 n/a 3.5023978847838807e-3 0.007062 1.549537e-14 ANGSD[v0.935] Nr Snps (per library): 2450. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB62808;ERS15565585;ERR11518578 n/a n/a n/a n/a SHN-355 SHN-355 0.002538170805281 0.0033548492075770003 0.41562188743068 0.47931167589023405 +SHN-492_MNT F Cusco City;Cusco;Sacsahuaman n/a n/a n/a n/a n/a n/a Peru PE Cusco City;Cusco Sacsahuaman -13.50986 -71.98169 contextual n/a n/a n/a 1400 1466 1533 Dates (CE) taken from Table S1 A B2 n/a tooth_molar 1 SHN-492 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 n/a 619537 n/a 5.3044208249740325e-3 0.168898 4.167879e-13 ANGSD[v0.935] Nr Snps (per library): 3415. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB62808;ERS15565586;ERR11518582 n/a n/a n/a n/a SHN-492 SHN-492 0.004321895941449 0.00041992200936200004 0.785494195695924 0.005038703697934001 +SHN-575_MNT M Cusco City;Cusco;Sacsahuaman n/a n/a n/a n/a n/a n/a Peru PE Cusco City;Cusco Sacsahuaman -13.50986 -71.98169 contextual n/a n/a n/a 1400 1466 1533 Dates (CE) taken from Table S1 A A2+(64) Q1b1a2 tooth_molar 1 SHN-575 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 n/a 879218 n/a 5.988679473539485e-3 0.006083 3.38414e-14 ANGSD[v0.935] Nr Snps (per library): 4670. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB62808;ERS15565587;ERR11518597 n/a n/a n/a n/a SHN-575 SHN-575 0.001977256985031 0.002653676019828 0.409935706178905 0.48719175600644604 +SHN-902_MNT F Cusco City;Cusco;Sacsahuaman n/a n/a n/a n/a n/a n/a Peru PE Cusco City;Cusco Sacsahuaman -13.50986 -71.98169 contextual n/a n/a n/a 1400 1466 1533 Dates (CE) taken from Table S1 A D1h n/a tooth_molar 1 SHN-902 1240K half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 n/a 327344 n/a 7.058316148176045e-3 0.185285 6.380789e-14 ANGSD[v0.935] Nr Snps (per library): 916. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB62808;ERS15565588;ERR11518584 n/a n/a n/a n/a SHN-902 SHN-902 0.006839695315628 0.0007178577511500001 0.7962545374461061 0.005962469648282001