diff --git a/2022_Fischer_Gauls/2022_Fischer_Gauls.janno b/2022_Fischer_Gauls/2022_Fischer_Gauls.janno index a2c3106..5d7bf3a 100644 --- a/2022_Fischer_Gauls/2022_Fischer_Gauls.janno +++ b/2022_Fischer_Gauls/2022_Fischer_Gauls.janno @@ -1,50 +1,50 @@ Poseidon_ID Genetic_Sex Group_Name Alternative_IDs Main_ID Relation_To Relation_Degree Relation_Type Relation_Note Collection_ID Country Country_ISO Location Site Latitude Longitude Date_Type Date_C14_Labnr Date_C14_Uncal_BP Date_C14_Uncal_BP_Err Date_BC_AD_Start Date_BC_AD_Median Date_BC_AD_Stop Date_Note MT_Haplogroup Y_Haplogroup Source_Tissue Nr_Libraries Library_Names Capture_Type UDG Library_Built Genotype_Ploidy Data_Preparation_Pipeline_URL Endogenous Nr_SNPs Coverage_on_Target_SNPs Damage Contamination Contamination_Err Contamination_Meas Contamination_Note Genetic_Source_Accession_IDs Primary_Contact Publication Note Keywords Eager_ID RateX RateY RateErrX RateErrY -BLH447_MNT U Unknown n/a BLH447 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 1 BLH447 Shotgun half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 16.469537 118110 n/a 0.045761879879023956 0.19997500000000004 4.339289e-15 ANGSD[v0.935] Nr Snps (per library): 203. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB50940;ERS10593607;ERR8613013 n/a FischerIScience2022 n/a n/a BLH447 0.9073373289327461 0.0043999761355460005 0.013483143592321 0.001136139914401 -GLN29-A_MNT U Unknown n/a GLN29-A n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 1 GLN29-A Shotgun half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 66.576872 108043 n/a 0.0447807402393033 0.238048 1.913525e-14 ANGSD[v0.935] Nr Snps (per library): 389. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB50940;ERS10593633;ERR8613039 n/a FischerIScience2022 n/a n/a GLN29-A 1.285210603104116 0.004815253610468 0.016918530204134002 0.001243378124132 -GLN32_MNT U Unknown n/a GLN32 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 1 GLN32 Shotgun half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 26.716835 82108 n/a 0.22614876258818956 n/a n/a n/a Nr Snps (per library): 30. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB50940;ERS10593634;ERR8613040 n/a FischerIScience2022 n/a n/a GLN32 0.5150224408088231 0.49623608606863207 0.012109764435171 0.014603200825797 -CROI1-4_MNT U Unknown n/a CROI1-4 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 1 CROI1-4 Shotgun half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 79.811086 33294 n/a 0.0639682131845544 0.007149 1.011509e-16 ANGSD[v0.935] Nr Snps (per library): 137. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB50940;ERS10593621;ERR8613027 n/a FischerIScience2022 n/a n/a CROI1-4 0.5814781846586561 0.548279192185106 0.019295032868138003 0.023002137785970003 -GLN126A_MNT U Unknown n/a GLN126A n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 1 GLN126A Shotgun half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 31.239358 82295 n/a 0.08837403535984116 n/a n/a n/a Nr Snps (per library): 27. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB50940;ERS10593630;ERR8613036 n/a FischerIScience2022 n/a n/a GLN126A 0.44770079059141904 0.397854386270357 0.011261583707110001 0.013042730979633 -SCPG2_MNT U Unknown n/a SCPG2 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 1 SCPG2 Shotgun half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 70.950198 124158 n/a 0.04545604845265092 0.249828 6.644015e-14 ANGSD[v0.935] Nr Snps (per library): 610. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB50940;ERS10593642;ERR8613048 n/a FischerIScience2022 n/a n/a SCPG2 1.344414065423972 0.014075655092815002 0.016063965390203 0.0019713797614870003 -BUCH48-1_MNT U Unknown n/a BUCH48-1 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 1 BUCH48-1 Shotgun half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 52.912179 254775 n/a 0.044705454500625644 0.00285 6.749139e-17 ANGSD[v0.935] Nr Snps (per library): 300. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB50940;ERS10593610;ERR8613016 n/a FischerIScience2022 n/a n/a BUCH48-1 0.44735044727473305 0.47610315683456506 0.006143363046417 0.0077949520243150005 -Att52-2_MNT U Unknown n/a Att52-2 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 1 Att52-2 Shotgun half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 17.102628 206047 n/a 0.024528449880245645 0.270151 3.306993e-14 ANGSD[v0.935] Nr Snps (per library): 526. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB50940;ERS10593602;ERR8613008 n/a FischerIScience2022 n/a n/a Att52-2 0.8463418160614471 0.016258644234185 0.009587181603314001 0.0016102171980120002 -VAS79-2_MNT U Unknown n/a VAS79-2 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 1 VAS79-2 Shotgun half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 91.123802 206817 n/a 0.03339240887900254 -0.001033 2.195599e-16 ANGSD[v0.935] Nr Snps (per library): 711. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB50940;ERS10593647;ERR8613053 n/a FischerIScience2022 n/a n/a VAS79-2 0.7427772959298251 0.603095811306532 0.008672984115575 0.009569351471447001 -BES1154_MNT U Unknown n/a BES1154 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 1 BES1154 Shotgun half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 70.063074 111621 n/a 0.06319893234116553 0.268556 1.186485e-14 ANGSD[v0.935] Nr Snps (per library): 565. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB50940;ERS10593604;ERR8613010 n/a FischerIScience2022 n/a n/a BES1154 1.405512995882802 0.018056698234296002 0.017317635521872002 0.00235138440403 -Pech9_MNT U Unknown n/a Pech9 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 1 Pech9 Shotgun half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 10.920938 175513 n/a 0.03430794856770405 0.224773 1.911584e-14 ANGSD[v0.935] Nr Snps (per library): 367. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB50940;ERS10593639;ERR8613045 n/a FischerIScience2022 n/a n/a Pech9 0.896550130697459 0.009781269216802 0.010835018478827 0.001369841823873 -PEY73_MNT U Unknown n/a PEY73 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 1 PEY73 Shotgun half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 73.457026 139749 n/a 0.0703115416583073 0.265824 1.521937e-13 ANGSD[v0.935] Nr Snps (per library): 929. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB50940;ERS10601152;ERR8613046 n/a FischerIScience2022 n/a n/a PEY73 1.401543104659795 0.007917852824862001 0.015310622925670002 0.0013784761821060002 -Pech3_MNT U Unknown n/a Pech3 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 1 Pech3 Shotgun half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 17.061959 295772 n/a 0.03565242553895124 0.008033 1.129293e-15 ANGSD[v0.935] Nr Snps (per library): 328. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB50940;ERS10593638;ERR8613044 n/a FischerIScience2022 n/a n/a Pech3 0.43215661935070004 0.450451357159918 0.0055326971040320005 0.00694711829265 -CLR23_MNT U Unknown n/a CLR23 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 1 CLR23 Shotgun half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 29.457925 255755 n/a 0.037935327664750364 0.010639000000000001 4.344435e-16 ANGSD[v0.935] Nr Snps (per library): 246. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB50940;ERS10593614;ERR8613020 n/a FischerIScience2022 n/a n/a CLR23 0.44278783708095504 0.45475802943380705 0.006082368915977 0.007579802367207001 -WET429_MNT U Unknown n/a WET429 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 1 WET429 Shotgun half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 84.608671 157764 n/a 0.04252400397913701 -0.001171 7.191784e-18 ANGSD[v0.935] Nr Snps (per library): 276. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB50940;ERS10593648;ERR8613054 n/a FischerIScience2022 n/a n/a WET429 0.6641496372425041 0.562377987891149 0.009705539988569 0.010947622804092 -BUCH82_MNT U Unknown n/a BUCH82 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 1 BUCH82 Shotgun half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 27.45233 106732 n/a 0.03542738929720909 0.255202 2.012231e-15 ANGSD[v0.935] Nr Snps (per library): 147. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB50940;ERS10593612;ERR8613018 n/a FischerIScience2022 n/a n/a BUCH82 0.910755196512478 0.010442725267192001 0.014249212196554001 0.0018463041158530002 -GDF1341_MNT U Unknown n/a GDF1341 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 1 GDF1341 Shotgun half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 16.170428 267167 n/a 0.06926447456224866 0.23278 1.251368e-13 ANGSD[v0.935] Nr Snps (per library): 1084. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB50940;ERS10593627;ERR8613033 n/a FischerIScience2022 n/a n/a GDF1341 0.8314524936906681 0.005812946382635 0.008195209042669 0.0008304894380160001 -CLR24_MNT U Unknown n/a CLR24 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 1 CLR24 Shotgun half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 34.34906 291792 n/a 0.03811045172752082 0.002632 1.739141e-16 ANGSD[v0.935] Nr Snps (per library): 305. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB50940;ERS10593615;ERR8613021 n/a FischerIScience2022 n/a n/a CLR24 0.425246489127027 0.45829148426628 0.005524013766088001 0.007054740979239001 -CLR31_MNT U Unknown n/a CLR31 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 1 CLR31 Shotgun half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 29.108826 334205 n/a 0.04432902364090676 0.008994 1.288385e-15 ANGSD[v0.935] Nr Snps (per library): 383. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB50940;ERS10593616;ERR8613022 n/a FischerIScience2022 n/a n/a CLR31 0.418145089575414 0.44509749102835205 0.005034818521747001 0.006390116740443001 -Col239_MNT U Unknown n/a Col239 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 1 Col239 Shotgun half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 24.857955 230861 n/a 0.03080653158410112 0.003292 9.291303000000001e-17 ANGSD[v0.935] Nr Snps (per library): 205. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB50940;ERS10593619;ERR8613025 n/a FischerIScience2022 n/a n/a Col239 0.446274433836355 0.460476526248064 0.006487683115348 0.008103784195579 -BUCH48-2_MNT U Unknown n/a BUCH48-2 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 1 BUCH48-2 Shotgun half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 12.762237 130883 n/a 0.030342506791004156 n/a n/a n/a Nr Snps (per library): 69. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB50940;ERS10593611;ERR8613017 n/a FischerIScience2022 n/a n/a BUCH48-2 0.45771690808631504 0.483407825702773 0.008953645120358001 0.011315870481852001 -ERS83-2_MNT U Unknown n/a ERS83-2 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 1 ERS83-2 Shotgun half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 89.910175 245344 n/a 0.04529859695569433 0.001328 4.742766e-16 ANGSD[v0.935] Nr Snps (per library): 950. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB50940;ERS10593624;ERR8613030 n/a FischerIScience2022 n/a n/a ERS83-2 0.7180976361047321 0.6057764885197431 0.007732017084011 0.008700576647537001 -CHF106_MNT U Unknown n/a CHF106 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 1 CHF106 Shotgun half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 17.145788 175786 n/a 0.037444307338715 0.020284 1.071604e-16 ANGSD[v0.935] Nr Snps (per library): 107. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB50940;ERS10593613;ERR8613019 n/a FischerIScience2022 n/a n/a CHF106 0.46412807073275303 0.467891841655916 0.007698009881320001 0.009501860754333001 -BPV1445_MNT U Unknown n/a BPV1445 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 1 BPV1445 Shotgun half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 16.667696 187265 n/a 0.032144266230506625 0.20255900000000002 2.812333e-14 ANGSD[v0.935] Nr Snps (per library): 508. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB50940;ERS10593608;ERR8613014 n/a FischerIScience2022 n/a n/a BPV1445 0.9330443120172781 0.006070944522308001 0.010673306055742 0.00104124812538 -CROI11_MNT U Unknown n/a CROI11 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 1 CROI11 Shotgun half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 24.864762 92845 n/a 0.028236193231638458 0.183771 2.028437e-15 ANGSD[v0.935] Nr Snps (per library): 110. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB50940;ERS10593622;ERR8613028 n/a FischerIScience2022 n/a n/a CROI11 0.918065686265616 0.00453978740126 0.015405935226249001 0.0013106081981930002 -Att27_MNT U Unknown n/a Att27 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 1 Att27 Shotgun half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 26.461006 176934 n/a 0.02420966235530524 0.245507 1.226285e-14 ANGSD[v0.935] Nr Snps (per library): 370. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB50940;ERS10593600;ERR8613006 n/a FischerIScience2022 n/a n/a Att27 0.8573641986020111 0.005290877526509001 0.010508560007097 0.000999956968067 -CROI12-2_MNT U Unknown n/a CROI12-2 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 1 CROI12-2 Shotgun half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 14.753634 135253 n/a 0.03414779388503266 0.232086 5.253655e-15 ANGSD[v0.935] Nr Snps (per library): 213. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB50940;ERS10593623;ERR8613029 n/a FischerIScience2022 n/a n/a CROI12-2 0.781763537891345 0.007247695016946 0.011522042297257002 0.0013460016480800001 -GLN141_MNT U Unknown n/a GLN141 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 1 GLN141 Shotgun half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 19.486032 164899 n/a 0.08504119312180489 -0.001155 1.606376e-17 ANGSD[v0.935] Nr Snps (per library): 113. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB50940;ERS10593632;ERR8613038 n/a FischerIScience2022 n/a n/a GLN141 0.452245003963533 0.44959249615454405 0.007859116912464001 0.009633202602700001 -UN19_MNT U Unknown n/a UN19 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 1 UN19 Shotgun half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 23.493316 289369 n/a 0.1593784985290835 -0.002639 1.565588e-16 ANGSD[v0.935] Nr Snps (per library): 362. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB50940;ERS10593644;ERR8613050 n/a FischerIScience2022 n/a n/a UN19 0.44661380664799305 0.45066977405676206 0.005697578457946001 0.007036977098561 -GLN126B_MNT U Unknown n/a GLN126B n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 1 GLN126B Shotgun half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 31.590454 53901 n/a 0.08724551514683551 n/a n/a n/a Nr Snps (per library): 6. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB50940;ERS10593631;ERR8613037 n/a FischerIScience2022 n/a n/a GLN126B 0.44268559013964703 0.431512162985199 0.013945156307043 0.016924833032928 -CLR44_MNT U Unknown n/a CLR44 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 1 CLR44 Shotgun half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 27.382232 301458 n/a 0.03553232095129944 0.015551 1.422862e-15 ANGSD[v0.935] Nr Snps (per library): 293. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB50940;ERS10593618;ERR8613024 n/a FischerIScience2022 n/a n/a CLR44 0.43709435007449504 0.473518380028188 0.005501282274311001 0.007043752735034 -BES1096B_MNT U Unknown n/a BES1096B n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 1 BES1096B Shotgun half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 21.000496 120236 n/a 0.03138617337328067 n/a n/a n/a Nr Snps (per library): 41. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB50940;ERS10593603;ERR8613009 n/a FischerIScience2022 n/a n/a BES1096B 0.45005670457568303 0.47143799370992 0.009285291308903001 0.011686961010651 -Att3_MNT U Unknown n/a Att3 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 1 Att3 Shotgun half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 38.281298 293174 n/a 0.04250235068925567 0.014258 1.812329e-15 ANGSD[v0.935] Nr Snps (per library): 276. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB50940;ERS10593601;ERR8613007 n/a FischerIScience2022 n/a n/a Att3 0.439945422745661 0.45277652070949403 0.005612162953353 0.007001316312285 -bES1249_MNT U Unknown n/a bES1249 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 1 BES1249 Shotgun half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 46.842263 88156 n/a 0.05573957455969998 n/a n/a n/a Nr Snps (per library): 82. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB50940;ERS10593605;ERR8613011 n/a FischerIScience2022 n/a n/a bES1249 0.5093485396124581 0.5063335866462231 0.011557415799048001 0.014160099100212 -Gox287_MNT U Unknown n/a Gox287 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 1 Gox287 Shotgun half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 43.480007 382265 n/a 0.04432715734852 0.004487 6.795103e-16 ANGSD[v0.935] Nr Snps (per library): 983. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB50940;ERS10593635;ERR8613041 n/a FischerIScience2022 n/a n/a Gox287 0.563578354540964 0.525850163143284 0.005453168073095 0.0064672386595210005 -UN129_MNT U Unknown n/a UN129 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 1 UN129 Shotgun half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 93.183504 168458 n/a 0.060594988257632536 -0.000514 6.012192e-18 ANGSD[v0.935] Nr Snps (per library): 124. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB50940;ERS10593643;ERR8613049 n/a FischerIScience2022 n/a n/a UN129 0.42250486173775903 0.477093015261684 0.00748661732239 0.009790091682111 -BPV1455_MNT U Unknown n/a BPV1455 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 1 BPV1455 Shotgun half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 31.05364 131985 n/a 0.034975432416050736 n/a n/a n/a Nr Snps (per library): 73. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB50940;ERS10593609;ERR8613015 n/a FischerIScience2022 n/a n/a BPV1455 0.47219194591288904 0.460287891603176 0.009054650949521001 0.010987102278100002 -BFT228_MNT U Unknown n/a BFT228 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 1 BFT228 Shotgun half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 20.420927 134980 n/a 0.038954053026060045 n/a n/a n/a Nr Snps (per library): 69. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB50940;ERS10593606;ERR8613012 n/a FischerIScience2022 n/a n/a BFT228 0.466959020343696 0.49374848935654503 0.008913253860121 0.011270868942682 -PAL170_MNT U Unknown n/a PAL170 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 1 PAL170 Shotgun half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 16.147203 139119 n/a 0.027146787427263654 0.266516 1.880083e-14 ANGSD[v0.935] Nr Snps (per library): 238. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB50940;ERS10593637;ERR8613043 n/a FischerIScience2022 n/a n/a PAL170 0.9239061076727371 0.013311794085811 0.012477054653026001 0.0018118480328170002 -Col330_MNT U Unknown n/a Col330 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 1 Col330 Shotgun half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 13.997604 164693 n/a 0.027310341438141917 0.01137 5.255954e-17 ANGSD[v0.935] Nr Snps (per library): 103. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB50940;ERS10593620;ERR8613026 n/a FischerIScience2022 n/a n/a Col330 0.4585692520628 0.459936272699677 0.007923286648824001 0.009755079736630002 -VAS75_MNT U Unknown n/a VAS75 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 1 VAS75 Shotgun half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 88.345728 201640 n/a 0.06229531082267198 0.260597 4.012043e-13 ANGSD[v0.935] Nr Snps (per library): 1874. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB50940;ERS10593646;ERR8613052 n/a FischerIScience2022 n/a n/a VAS75 1.39002334831 0.009018570408721002 0.012378939683675 0.001194691761213 -PT7_MNT U Unknown n/a PT7 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 1 PT7 Shotgun half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 64.977003 189969 n/a 0.071416959632076 0.22898699999999997 8.762435e-14 ANGSD[v0.935] Nr Snps (per library): 1682. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB50940;ERS10593641;ERR8613047 n/a FischerIScience2022 n/a n/a PT7 1.364528651710645 0.010660845450961002 0.012677456875244 0.0013433435414470002 -UN85_MNT U Unknown n/a UN85 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 1 UN85 Shotgun half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 17.410501 197769 n/a 0.04156160472118971 -0.000277 1.230522e-17 ANGSD[v0.935] Nr Snps (per library): 230. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB50940;ERS10593645;ERR8613051 n/a FischerIScience2022 n/a n/a UN85 0.5673982612192541 0.504604962630414 0.008011369376822 0.009272366530501001 -ISL6950_MNT U Unknown n/a ISL6950 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 1 ISL6950 Shotgun half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 42.369168 744273 n/a 0.02506648225691614 0.002742 8.877633e-15 ANGSD[v0.935] Nr Snps (per library): 2965. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB50940;ERS10593636;ERR8613042 n/a FischerIScience2022 n/a n/a ISL6950 0.46289400420951304 0.47730681133983405 0.003099283934198 0.0038695851656390004 -CLR35_MNT U Unknown n/a CLR35 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 1 CLR35 Shotgun half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 71.077315 412389 n/a 0.03067182038123488 -0.001062 2.130279e-16 ANGSD[v0.935] Nr Snps (per library): 706. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB50940;ERS10593617;ERR8613023 n/a FischerIScience2022 n/a n/a CLR35 0.45766552140006506 0.454025137547693 0.004670501853855 0.005718482879363 -GDF1348_MNT U Unknown n/a GDF1348 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 1 GDF1348 Shotgun half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 52.00599 408977 n/a 0.10781315245750976 0.005634 4.270182e-15 ANGSD[v0.935] Nr Snps (per library): 1023. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB50940;ERS10593628;ERR8613034 n/a FischerIScience2022 n/a n/a GDF1348 0.33620544672179004 0.39983484457802504 0.0037242211688210004 0.0050016676756330005 -GDF1264_MNT U Unknown n/a GDF1264 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 1 GDF1264 Shotgun half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 66.305023 525495 n/a 0.09585365701726768 0.005101 4.475116e-15 ANGSD[v0.935] Nr Snps (per library): 2201. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB50940;ERS10593626;ERR8613032 n/a FischerIScience2022 n/a n/a GDF1264 0.326942311776445 0.38285440164984 0.0029051346883480003 0.003871426972577 -GDF1231_MNT U Unknown n/a GDF1231 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 1 GDF1231 Shotgun half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 57.829828 616663 n/a 0.07706675757594067 0.34587999999999997 1.1092300000000001e-12 ANGSD[v0.935] Nr Snps (per library): 7170. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB50940;ERS10593625;ERR8613031 n/a FischerIScience2022 n/a n/a GDF1231 0.8379434794422981 0.006086319425069001 0.004780385319893 0.000493708346235 -GDF1349B_MNT U Unknown n/a GDF1349B n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 1 GDF1349B Shotgun half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 36.872557 882548 n/a 0.24185920653651077 0.256019 4.753463e-12 ANGSD[v0.935] Nr Snps (per library): 17959. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB50940;ERS10593629;ERR8613035 n/a FischerIScience2022 n/a n/a GDF1349B 0.928644935148734 0.005939640099947001 0.0037510858054680004 0.000362851857817 +BLH447_MNT F French_IA_North n/a BLH447 n/a n/a n/a n/a n/a France FR France, Aisne, Bucy-le-Long, la Heronnière La Héronnière 49.4 3.3833 contextual n/a n/a n/a 350 338 325 n/a H5a1 n/a osteological remain 1 BLH447 Shotgun half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 16.469537 118110 n/a 0.0457618798790239 0.19997500000000004 4.339289e-15 ANGSD[v0.935] Nr Snps (per library): 203. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded.] PRJEB50940;ERS10593607;ERR8613013 S. Desenne FischerIScience2022 n/a n/a BLH447 0.9073373289327461 0.0043999761355460005 0.013483143592321 0.001136139914401 +GLN29-A_MNT F French_IA_Paris_Basin n/a GLN29-A n/a n/a n/a n/a n/a France FR France, Yonne, Gurgy Les Noisats Gurgy Les Noisats 47.8667 3.5667 contextual n/a n/a n/a 300 200 100 n/a U8a1 n/a osteological remaina 1 GLN29-A Shotgun half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 66.576872 108043 n/a 0.0447807402393033 0.238048 1.913525e-14 ANGSD[v0.935] Nr Snps (per library): 389. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB50940;ERS10593633;ERR8613039 S. Rottier FischerIScience2022 n/a n/a GLN29-A 1.285210603104116 0.004815253610468 0.016918530204134002 0.001243378124132 +GLN32_MNT M French_IA_Paris_Basin n/a GLN32 n/a n/a n/a n/a n/a France FR France, Yonne, Gurgy Les Noisats Gurgy Les Noisats 47.8667 3.5667 contextual n/a n/a n/a 300 200 100 n/a H3 I2a1b2a2a1 osteological remain 1 GLN32 Shotgun half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 26.716835 82108 n/a 0.2261487625881895 n/a n/a n/a Nr Snps (per library): 30. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB50940;ERS10593634;ERR8613040 S. Rottier FischerIScience2022 n/a n/a GLN32 0.5150224408088231 0.49623608606863207 0.012109764435171 0.014603200825797 +CROI1-4_MNT M French_EIA_Alsace n/a CROI1-4 n/a n/a n/a n/a n/a France FR France, Haut-Rhin, Sainte Croix en Plaine Oberes Holzackerfeld Sainte Croix en Plaine Oberes Holzackerfeld 48.004 7.3856 contextual n/a n/a n/a 800 713 625 n/a J1c1b1a R1b1a1b osteological remain 1 CROI1-4 Shotgun half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 79.811086 33294 n/a 0.0639682131845544 0.007149 1.011509e-16 ANGSD[v0.935] Nr Snps (per library): 137. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB50940;ERS10593621;ERR8613027 A. Thevenin FischerIScience2022 n/a n/a CROI1-4 0.5814781846586561 0.548279192185106 0.019295032868138003 0.023002137785970003 +GLN126A_MNT M French_IA_Paris_Basin n/a GLN126A n/a n/a n/a n/a n/a France FR France, Yonne, Gurgy Les Noisats Gurgy Les Noisats 47.8667 3.5667 contextual n/a n/a n/a 300 200 100 n/a H1e R1b1a1b1a1 osteological remain 1 GLN126A Shotgun half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 31.239358 82295 n/a 0.0883740353598411 n/a n/a n/a Nr Snps (per library): 27. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB50940;ERS10593630;ERR8613036 S. Rottier FischerIScience2022 n/a n/a GLN126A 0.447700790591419 0.397854386270357 0.011261583707110001 0.013042730979633 +SCPG2_MNT F French_LIA_Alsace n/a SCPG2 n/a n/a n/a n/a n/a France FR France, Haut-Rhin, Sainte Croix en Plaine Oberholtzackerfeld /Echangeur Gendarmerie (2005) Sainte Croix en Plaine Oberholtzackerfeld /Echangeur Gendarmerie (2005) 48.0833 7.3667 contextual n/a n/a n/a n/a n/a n/a n/a T n/a osteological remain 1 SCPG2 Shotgun half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 70.950198 124158 n/a 0.0454560484526509 0.249828 6.644015e-14 ANGSD[v0.935] Nr Snps (per library): 610. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB50940;ERS10593642;ERR8613048 C. Veber FischerIScience2022 n/a n/a SCPG2 1.344414065423972 0.014075655092815002 0.016063965390203 0.0019713797614870003 +BUCH48-1_MNT M French_IA_Champagne n/a BUCH48-1 n/a n/a n/a n/a n/a France FR France, Aube, Buchères, PLA D41 PLA D41 48.2333 4.1667 contextual n/a n/a n/a 475 363 250 n/a U4b1a3a G2a2b2a1a1b1a osteological remain 1 BUCH48-1 Shotgun half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 52.912179 254775 n/a 0.0447054545006256 0.00285 6.749139000000001e-17 ANGSD[v0.935] Nr Snps (per library): 300. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB50940;ERS10593610;ERR8613016 V. Desmarchelier FischerIScience2022 n/a n/a BUCH48-1 0.447350447274733 0.47610315683456506 0.006143363046417 0.0077949520243150005 +Att52-2_MNT F French_IA_North n/a Att52-2 ATT_27_MNT;ATT3_MNT second;second n/a n/a n/a France FR France,Oise, Attichy-Bitry, Le Buissonnet Le Buissonnet 49.4167 3.05 contextual n/a n/a n/a 350 275 200 n/a K1a3a n/a osteological remain 1 Att52-2 Shotgun half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 17.102628 206047 n/a 0.0245284498802456 0.270151 3.306993e-14 ANGSD[v0.935] Nr Snps (per library): 526. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB50940;ERS10593602;ERR8613008 S. Desenne FischerIScience2022 n/a n/a Att52-2 0.8463418160614471 0.016258644234185 0.009587181603314001 0.0016102171980120002 +VAS79-2_MNT M French_IA_North n/a VAS79-2 n/a n/a n/a n/a n/a France FR France, Aisne, Vasseny, Dessus des Groins Dessus des Groins 49.35 3.4833 contextual n/a n/a n/a 500 400 300 n/a T2b R1b1a1b osteological remain 1 VAS79-2 Shotgun half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 91.123802 206817 n/a 0.0333924088790025 -0.001033 2.195599e-16 ANGSD[v0.935] Nr Snps (per library): 711. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB50940;ERS10593647;ERR8613053 S. Desenne FischerIScience2022 n/a n/a VAS79-2 0.7427772959298251 0.603095811306532 0.008672984115575 0.009569351471447001 +BES1154_MNT F French_IA_South n/a BES1154 n/a n/a n/a n/a n/a France FR France, Aude, Bessan, la Monédière la Monédière 43.3667 3.4167 contextual n/a n/a n/a 510 493 475 n/a V9 n/a osteological remain 1 BES1154 Shotgun half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 70.063074 111621 n/a 0.0631989323411655 0.268556 1.186485e-14 ANGSD[v0.935] Nr Snps (per library): 565. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB50940;ERS10593604;ERR8613010 A. Beylier FischerIScience2022 n/a n/a BES1154 1.405512995882802 0.018056698234296002 0.017317635521872002 0.00235138440403 +Pech9_MNT F French_IA_South n/a Pech9 n/a n/a n/a n/a n/a France FR France, Aude, Oppidum de Pech Maho Oppidum de Pech Maho 43.04563 2.95644 contextual n/a n/a n/a 600 450 300 n/a J1c n/a osteological remain 1 Pech9 Shotgun half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 10.920938 175513 n/a 0.034307948567704 0.224773 1.911584e-14 ANGSD[v0.935] Nr Snps (per library): 367. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB50940;ERS10593639;ERR8613045 E. Gailledrat FischerIScience2022 n/a n/a Pech9 0.896550130697459 0.009781269216802 0.010835018478827 0.001369841823873 +PEY73_MNT F French_IA_South n/a PEY73 n/a n/a n/a n/a n/a France FR France, Hérault, Agde, Le Peyrou 2 Le Peyrou 2 43.31137 3.48196 contextual n/a n/a n/a 200 175 150 n/a U5b3 n/a osteological remain 1 PEY73 Shotgun half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 73.457026 139749 n/a 0.0703115416583073 0.265824 1.521937e-13 ANGSD[v0.935] Nr Snps (per library): 929. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB50940;ERS10601152;ERR8613046 B. Dedet FischerIScience2022 n/a n/a PEY73 1.401543104659795 0.007917852824862001 0.015310622925670002 0.0013784761821060002 +Pech3_MNT M French_IA_South n/a Pech3 n/a n/a n/a n/a n/a France FR France, Aude, Oppidum de Pech Maho Oppidum de Pech Maho 43.04563 2.95644 contextual n/a n/a n/a 225 213 200 n/a HV0a R1b1a1b1a1a2c1a~ osteological remain 1 Pech3 Shotgun half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 17.061959 295772 n/a 0.0356524255389512 0.008033 1.129293e-15 ANGSD[v0.935] Nr Snps (per library): 328. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB50940;ERS10593638;ERR8613044 E. Gailledrat FischerIScience2022 n/a n/a Pech3 0.4321566193507 0.450451357159918 0.0055326971040320005 0.00694711829265 +CLR23_MNT M French_IA_South n/a CLR23 n/a n/a n/a n/a n/a France FR France, Aude, Le Cailar, Place de la Saint-Jean Place de la Saint-Jean 43.667 4.2333 contextual n/a n/a n/a 400 350 300 n/a R0a1b R1b1a1b1a1a1c2b2 osteological remain 1 CLR23 Shotgun half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 29.457925 255755 n/a 0.0379353276647503 0.010639 4.344435e-16 ANGSD[v0.935] Nr Snps (per library): 246. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB50940;ERS10593614;ERR8613020 R. Roure FischerIScience2022 n/a n/a CLR23 0.442787837080955 0.45475802943380705 0.006082368915977 0.007579802367207001 +WET429_MNT M French_LIA_Alsace n/a WET429 n/a n/a n/a n/a n/a France FR Haut-Rhin Wettholsheim Ricoh 47.8095 7.2415 n/a n/a n/a n/a n/a n/a n/a n/a K1a4a1 G2a2b2a1a1b1 osteological remain 1 WET429 Shotgun half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 84.608671 157764 n/a 0.042524003979137 -0.001171 7.191784e-18 ANGSD[v0.935] Nr Snps (per library): 276. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB50940;ERS10593648;ERR8613054 C. Jeunesse FischerIScience2022 n/a n/a WET429 0.6641496372425041 0.562377987891149 0.009705539988569 0.010947622804092 +BUCH82_MNT F French_IA_Champagne n/a BUCH82 n/a n/a n/a n/a n/a France FR France, Aube, Buchères, PLA D37 PLA D37 48.2333 4.1167 contextual n/a n/a n/a 750 475 200 n/a K1a n/a osteological remain 1 BUCH82 Shotgun half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 27.45233 106732 n/a 0.035427389297209 0.255202 2.012231e-15 ANGSD[v0.935] Nr Snps (per library): 147. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB50940;ERS10593612;ERR8613018 C. Paresys FischerIScience2022 n/a n/a BUCH82 0.910755196512478 0.010442725267192001 0.014249212196554001 0.0018463041158530002 +GDF1341_MNT F French_IA_Paris_Basin n/a GDF1341 n/a n/a n/a n/a n/a France FR France, Aube, Barbuise les Grèves de Frécul les Grèves de Frécul 48.55 3.5833 contextual n/a n/a n/a 500 400 300 n/a K1a1b1 n/a osteological remain 1 GDF1341 Shotgun half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 16.170428 267167 n/a 0.0692644745622486 0.23278 1.251368e-13 ANGSD[v0.935] Nr Snps (per library): 1084. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB50940;ERS10593627;ERR8613033 S. Rottier FischerIScience2022 n/a n/a GDF1341 0.8314524936906681 0.005812946382635 0.008195209042669 0.0008304894380160001 +CLR24_MNT M French_IA_South n/a CLR24 n/a n/a n/a n/a n/a France FR France, Aude, Le Cailar, Place de la Saint-Jean Place de la Saint-Jean 43.667 4.2333 contextual n/a n/a n/a 400 350 300 n/a H1e R1b1a1b1a1 osteological remain 1 CLR24 Shotgun half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 34.34906 291792 n/a 0.0381104517275208 0.002632 1.739141e-16 ANGSD[v0.935] Nr Snps (per library): 305. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB50940;ERS10593615;ERR8613021 R. Roure FischerIScience2022 n/a n/a CLR24 0.425246489127027 0.45829148426628 0.005524013766088001 0.007054740979239001 +CLR31_MNT M French_IA_South n/a CLR31 n/a n/a n/a n/a n/a France FR France, Aude, Le Cailar, Place de la Saint-Jean Place de la Saint-Jean 43.667 4.2333 contextual n/a n/a n/a 400 350 300 n/a N1a1a1 R1b1a1b1a1a2a2 osteological remain 1 CLR31 Shotgun half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 29.108826 334205 n/a 0.0443290236409067 0.008994 1.288385e-15 ANGSD[v0.935] Nr Snps (per library): 383. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB50940;ERS10593616;ERR8613022 R. Roure FischerIScience2022 n/a n/a CLR31 0.418145089575414 0.44509749102835205 0.005034818521747001 0.006390116740443001 +Col239_MNT M French_LIA_Alsace_o n/a Col239 n/a n/a n/a n/a n/a France FR France, Haut-Rhin, Colmar, Jardin des Aubépines Jardin des Aubépines 48.0833 7.3667 contextual n/a n/a n/a 740 565 390 n/a H1e R1b1a1b1a1a2c1a5b1a1c osteological remain 1 Col239 Shotgun half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 24.857955 230861 n/a 0.0308065315841011 0.003292 9.291303e-17 ANGSD[v0.935] Nr Snps (per library): 205. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB50940;ERS10593619;ERR8613025 M. Roth-Zehner FischerIScience2022 n/a n/a Col239 0.446274433836355 0.460476526248064 0.006487683115348 0.008103784195579 +BUCH48-2_MNT M French_IA_Champagne n/a BUCH48-2 n/a n/a n/a n/a n/a France FR France, Aube, Buchères, PLA D41 PLA D41 48.2333 4.1167 contextual n/a n/a n/a 475 363 250 n/a K2 R1b1a1b osteological remain 1 BUCH48-2 Shotgun half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 12.762237 130883 n/a 0.0303425067910041 n/a n/a n/a Nr Snps (per library): 69. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB50940;ERS10593611;ERR8613017 V. Desmarchelier FischerIScience2022 n/a n/a BUCH48-2 0.457716908086315 0.483407825702773 0.008953645120358001 0.011315870481852001 +ERS83-2_MNT M French_LIA_Alsace n/a ERS83-2 n/a n/a n/a n/a n/a France FR France, Bas-Rhin, Erstein, Erstein Untergasse Erstein Untergasse 48.4333 7.6667 contextual n/a n/a n/a 400 250 100 n/a Ia4 G2a2b2a1a1b1a osteological remain 1 ERS83-2 Shotgun half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 89.910175 245344 n/a 0.0452985969556943 0.001328 4.742766e-16 ANGSD[v0.935] Nr Snps (per library): 950. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB50940;ERS10593624;ERR8613030 F. Abert FischerIScience2022 n/a n/a ERS83-2 0.7180976361047321 0.6057764885197431 0.007732017084011 0.008700576647537001 +CHF106_MNT M French_IA_Champagne n/a CHF106 n/a n/a n/a n/a n/a France FR France, Marne, Champfleury, RN51 RN51 48.6167 4 contextual n/a n/a n/a 475 438 400 n/a U4a1d R1b1a1b1a1a osteological remaina 1 CHF106 Shotgun half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 17.145788 175786 n/a 0.037444307338715 0.020284 1.071604e-16 ANGSD[v0.935] Nr Snps (per library): 107. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB50940;ERS10593613;ERR8613019 S. Culot FischerIScience2022 n/a n/a CHF106 0.464128070732753 0.467891841655916 0.007698009881320001 0.009501860754333001 +BPV1445_MNT F French_BA_Paris_Basin n/a BPV1445 n/a n/a n/a n/a n/a France FR France, Aube, Barbuise La Saulsotte La Saulsotte 48.55 3.5833 n/a n/a n/a n/a n/a n/a n/a n/a Ia4 n/a osteological remain 1 BPV1445 Shotgun half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 16.667696 187265 n/a 0.0321442662305066 0.202559 2.812333e-14 ANGSD[v0.935] Nr Snps (per library): 508. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB50940;ERS10593608;ERR8613014 S. Rottier FischerIScience2022 n/a n/a BPV1445 0.933044312017278 0.006070944522308001 0.010673306055742 0.00104124812538 +CROI11_MNT F French_EIA_Alsace n/a CROI11 n/a n/a n/a n/a n/a France FR France, Haut-Rhin, Sainte Croix en Plaine Oberes Holzackerfeld Sainte Croix en Plaine Oberes Holzackerfeld 48.0088 7.3856 contextual n/a n/a n/a 800 650 500 n/a T2 n/a osteological remain 1 CROI11 Shotgun half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 24.864762 92845 n/a 0.0282361932316384 0.183771 2.028437e-15 ANGSD[v0.935] Nr Snps (per library): 110. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB50940;ERS10593622;ERR8613028 A. Thevenin FischerIScience2022 n/a n/a CROI11 0.918065686265616 0.00453978740126 0.015405935226249001 0.0013106081981930002 +Att27_MNT F French_IA_North n/a Att27 ATT52-2_MNT;ATT3_MNT second;second n/a n/a n/a France FR France,Oise, Attichy-Bitry, Le Buissonnet Le Buissonnet 49.4167 3.05 contextual n/a n/a n/a 350 275 200 n/a K1a n/a osteological remain 1 Att27 Shotgun half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 26.461006 176934 n/a 0.0242096623553052 0.245507 1.226285e-14 ANGSD[v0.935] Nr Snps (per library): 370. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB50940;ERS10593600;ERR8613006 S. Desenne FischerIScience2022 n/a n/a Att27 0.8573641986020111 0.005290877526509001 0.010508560007097 0.000999956968067 +CROI12-2_MNT F French_EIA_Alsace n/a CROI12-2 n/a n/a n/a n/a n/a France FR France, Haut-Rhin, Sainte Croix en Plaine Oberes Holzackerfeld Sainte Croix en Plaine Oberes Holzackerfeld 48.0088 7.3856 n/a n/a n/a n/a n/a n/a n/a n/a H n/a osteological remain 1 CROI12-2 Shotgun half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 14.753634 135253 n/a 0.0341477938850326 0.232086 5.253655e-15 ANGSD[v0.935] Nr Snps (per library): 213. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB50940;ERS10593623;ERR8613029 n/a FischerIScience2022 n/a n/a CROI12-2 0.781763537891345 0.007247695016946 0.011522042297257002 0.0013460016480800001 +GLN141_MNT M French_IA_Paris_Basin n/a GLN141 n/a n/a n/a n/a n/a France FR France, Yonne, Gurgy Les Noisats Gurgy Les Noisats 47.8667 3.5667 contextual n/a n/a n/a 300 200 100 n/a K1a R1b1a1b1a1a2b6 osteological remain 1 GLN141 Shotgun half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 19.486032 164899 n/a 0.0850411931218048 -0.001155 1.606376e-17 ANGSD[v0.935] Nr Snps (per library): 113. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB50940;ERS10593632;ERR8613038 S. Rottier FischerIScience2022 n/a n/a GLN141 0.452245003963533 0.44959249615454405 0.007859116912464001 0.009633202602700001 +UN19_MNT M French_IA_Normandy n/a UN19 n/a n/a n/a n/a n/a France FR France, Manche, Urville-Nacqueville Urville-Nacquville 49.45 -1.4333 contextual n/a n/a n/a 120 100 80 n/a W1c R1b1a1b1a1a2b1a5a2a1a osteological remain 1 UN19 Shotgun half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 23.493316 289369 n/a 0.1593784985290835 -0.002639 1.565588e-16 ANGSD[v0.935] Nr Snps (per library): 362. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB50940;ERS10593644;ERR8613050 S. Rottier FischerIScience2022 n/a n/a UN19 0.446613806647993 0.45066977405676206 0.005697578457946001 0.007036977098561 +GLN126B_MNT M French_IA_Paris_Basin n/a GLN126B n/a n/a n/a n/a n/a France FR France, Yonne, Gurgy Les Noisats Gurgy Les Noisats 47.8667 3.5667 contextual n/a n/a n/a 300 200 100 n/a H1e R1b1a1b1a1 osteological remain 1 GLN126B Shotgun half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 31.590454 53901 n/a 0.0872455151468355 n/a n/a n/a Nr Snps (per library): 6. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB50940;ERS10593631;ERR8613037 S. Rottier FischerIScience2022 n/a n/a GLN126B 0.442685590139647 0.431512162985199 0.013945156307043 0.016924833032928 +CLR44_MNT M French_IA_South n/a CLR44 n/a n/a n/a n/a n/a France FR France, Aude, Le Cailar, Place de la Saint-Jean Place de la Saint-Jean 43.667 4.2333 contextual n/a n/a n/a 400 350 300 n/a H2b R1b1a1b1a1 osteological remain 1 CLR44 Shotgun half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 27.382232 301458 n/a 0.0355323209512994 0.015551 1.422862e-15 ANGSD[v0.935] Nr Snps (per library): 293. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB50940;ERS10593618;ERR8613024 R. Roure FischerIScience2022 n/a n/a CLR44 0.437094350074495 0.473518380028188 0.005501282274311001 0.007043752735034 +BES1096B_MNT M French_IA_South n/a BES1096B n/a n/a n/a n/a n/a France FR France, Aude, Bessan, la Monédière la Monédière 43.3667 3.4167 contextual n/a n/a n/a 475 462 450 n/a X2 R1b1a1b1a1a osteological remain 1 BES1096B Shotgun half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 21.000496 120236 n/a 0.0313861733732806 n/a n/a n/a Nr Snps (per library): 41. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB50940;ERS10593603;ERR8613009 A. Beylier FischerIScience2022 n/a n/a BES1096B 0.450056704575683 0.47143799370992 0.009285291308903001 0.011686961010651 +Att3_MNT M French_IA_North n/a Att3 ATT3_MNT;ATT27_MNT second;second n/a n/a n/a France FR France,Oise, Attichy-Bitry, Le Buissonnet Le Buissonnet 49.4167 3.05 contextual n/a n/a n/a 350 275 200 n/a H1 ? R1b1a1b1a1 osteological remain 1 Att3 Shotgun half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 38.281298 293174 n/a 0.0425023506892556 0.014258 1.812329e-15 ANGSD[v0.935] Nr Snps (per library): 276. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB50940;ERS10593601;ERR8613007 S. Desenne FischerIScience2022 n/a n/a Att3 0.439945422745661 0.45277652070949403 0.005612162953353 0.007001316312285 +BES1249_MNT M French_IA_South n/a bES1249 n/a n/a n/a n/a n/a France FR France, Aude, Bessan, la Monédière la Monédière 43.3667 3.4167 contextual n/a n/a n/a 150 100 50 n/a H2a2a ? G2a2b2a1a1b1a1a2b1a1 osteological remain 1 BES1249 Shotgun half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 46.842263 88156 n/a 0.0557395745596999 n/a n/a n/a Nr Snps (per library): 82. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB50940;ERS10593605;ERR8613011 A. Beylier FischerIScience2022 n/a n/a bES1249 0.5093485396124581 0.5063335866462231 0.011557415799048001 0.014160099100212 +Gox287_MNT M French_EIA_Alsace n/a Gox287 n/a n/a n/a n/a n/a France FR France, Bas-Rhin, Goxwiller Goxwiller 48.4333 7.4833 contextual n/a n/a n/a 550 500 450 n/a T1a I1a2b3 osteological remain 1 Gox287 Shotgun half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 43.480007 382265 n/a 0.04432715734852 0.004487 6.795103e-16 ANGSD[v0.935] Nr Snps (per library): 983. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB50940;ERS10593635;ERR8613041 S. Goepfert FischerIScience2022 n/a n/a Gox287 0.563578354540964 0.525850163143284 0.005453168073095 0.0064672386595210005 +UN129_MNT M French_IA_Normandy n/a UN129 n/a n/a n/a n/a n/a France FR France, Manche, Urville-Nacqueville Urville-Nacqueville 49.45 -1.4333 contextual n/a n/a n/a 120 100 80 n/a K1a1b1c R1b1a1b osteological remain 1 UN129 Shotgun half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 93.183504 168458 n/a 0.0605949882576325 -0.000514 6.012192e-18 ANGSD[v0.935] Nr Snps (per library): 124. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB50940;ERS10593643;ERR8613049 S. Rottier FischerIScience2022 n/a n/a UN129 0.422504861737759 0.477093015261684 0.00748661732239 0.009790091682111 +BPV1455_MNT M French_BA_Paris_Basin n/a BPV1455 n/a n/a n/a n/a n/a France FR France, Aube, Barbuise, La Saulsotte Barbuise La Saulsotte 48.55 3.5833 n/a n/a n/a n/a n/a n/a n/a n/a HV0a R1b1a1b osteological remain 1 BPV1455 Shotgun half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 31.05364 131985 n/a 0.0349754324160507 n/a n/a n/a Nr Snps (per library): 73. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB50940;ERS10593609;ERR8613015 S. Rottier FischerIScience2022 n/a n/a BPV1455 0.472191945912889 0.460287891603176 0.009054650949521001 0.010987102278100002 +BFT228_MNT M French_IA_North n/a BFT228 n/a n/a n/a n/a n/a France FR France, Aisne, Bucy-le-Long, la Fosse Tounise la Fosse Tounise 49.4 3.3833 contextual n/a n/a n/a 350 325 300 n/a H2a2a ? I2a1b1~ osteological remain 1 BFT228 Shotgun half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 20.420927 134980 n/a 0.03895405302606 n/a n/a n/a Nr Snps (per library): 69. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB50940;ERS10593606;ERR8613012 S. Desenne FischerIScience2022 n/a n/a BFT228 0.466959020343696 0.49374848935654503 0.008913253860121 0.011270868942682 +PAL170_MNT F French_IA_North n/a PAL170 n/a n/a n/a n/a n/a France FR France, Pas-de-Calais, La Pièce à Liards La Pièce à Liards 50.5219 1.6332 contextual n/a n/a n/a 600 550 500 n/a T2b7a n/a osteological remain 1 PAL170 Shotgun half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 16.147203 139119 n/a 0.0271467874272636 0.266516 1.880083e-14 ANGSD[v0.935] Nr Snps (per library): 238. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB50940;ERS10593637;ERR8613043 S. Oudry FischerIScience2022 n/a n/a PAL170 0.9239061076727372 0.013311794085811 0.012477054653026001 0.0018118480328170002 +Col330_MNT M French_LIA_Alsace n/a Col330 n/a n/a n/a n/a n/a France FR France, Haut-Rhin, Colmar, Jardin des Aubépines Jardin des Aubépines 48.0833 7.36667 contextual n/a n/a n/a 810 675 540 n/a J1c1b1a G2a2b2a1a1b1a1~ osteological remain 1 Col330 Shotgun half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 13.997604 164693 n/a 0.0273103414381419 0.01137 5.2559540000000007e-17 ANGSD[v0.935] Nr Snps (per library): 103. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB50940;ERS10593620;ERR8613026 M. Roth-Zehner FischerIScience2022 n/a n/a Col330 0.4585692520628 0.459936272699677 0.007923286648824001 0.009755079736630002 +VAS75_MNT F French_IA_North n/a VAS75 n/a n/a n/a n/a n/a France FR France, Aisne, Vasseny, Dessus des Groins Dessus des Groins 49.35 3.4833 contextual n/a n/a n/a 500 400 300 n/a H6a n/a osteological remain 1 VAS75 Shotgun half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 88.345728 201640 n/a 0.0622953108226719 0.260597 4.012043e-13 ANGSD[v0.935] Nr Snps (per library): 1874. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB50940;ERS10593646;ERR8613052 S. Desenne FischerIScience2022 n/a n/a VAS75 1.39002334831 0.009018570408721002 0.012378939683675 0.001194691761213 +PT7_MNT F French_IA_South n/a PT7 n/a n/a n/a n/a n/a France FR France, Gard, Gaillhan, Oppidum du Plan de la Tour Oppidum du Plan de la Tour 43.0833 4.03237 contextual n/a n/a n/a 425 413 400 n/a J1c1 n/a osteological remain 1 PT7 Shotgun half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 64.977003 189969 n/a 0.071416959632076 0.2289869999999999 8.762435e-14 ANGSD[v0.935] Nr Snps (per library): 1682. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB50940;ERS10593641;ERR8613047 B. Dedet FischerIScience2022 n/a n/a PT7 1.364528651710645 0.010660845450961002 0.012677456875244 0.0013433435414470002 +UN85_MNT M French_IA_Normandy n/a UN85 n/a n/a n/a n/a n/a France FR France, Manche, Urville-Nacqueville Urville-Nacqueville 49.45 -1.4333 contextual n/a n/a n/a 120 100 80 n/a H2a2a ? R1b1a1b1a1a2 osteological remain 1 UN85 Shotgun half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 17.410501 197769 n/a 0.0415616047211897 -0.000277 1.2305220000000001e-17 ANGSD[v0.935] Nr Snps (per library): 230. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB50940;ERS10593645;ERR8613051 S. Rottier FischerIScience2022 n/a n/a UN85 0.5673982612192541 0.504604962630414 0.008011369376822 0.009272366530501001 +ISL6950_MNT M French_IA_Champagne n/a ISL6950 n/a n/a n/a n/a n/a France FR France, Marne, Isles sur Suippe, Les Sohettes Les Sohettes 49.3556 4.2004 n/a n/a n/a n/a n/a n/a n/a n/a J1c1 R1b1a1b1a1a2a~ osteological remain 1 ISL6950 Shotgun half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 42.369168 744273 n/a 0.0250664822569161 0.002742 8.877633e-15 ANGSD[v0.935] Nr Snps (per library): 2965. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB50940;ERS10593636;ERR8613042 A. C. Baudry FischerIScience2022 n/a n/a ISL6950 0.462894004209513 0.47730681133983405 0.003099283934198 0.0038695851656390004 +CLR35_MNT M French_IA_South n/a CLR35 n/a n/a n/a n/a n/a France FR France, Aude, Le Cailar, Place de la Saint-Jean Place de la Saint-Jean 43.667 4.2333 contextual n/a n/a n/a 400 350 300 n/a H1e I2a1a1a~ osteological remain 1 CLR35 Shotgun half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 71.077315 412389 n/a 0.0306718203812348 -0.001062 2.130279e-16 ANGSD[v0.935] Nr Snps (per library): 706. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB50940;ERS10593617;ERR8613023 R. Roure FischerIScience2022 n/a n/a CLR35 0.457665521400065 0.454025137547693 0.004670501853855 0.005718482879363 +GDF1348_MNT M French_IA_Paris_Basin n/a GDF1348 n/a n/a n/a n/a n/a France FR France, Aube, Barbuise les Grèves de Frécul les Grèves de Frécul 48.55 3.5833 contextual n/a n/a n/a 500 400 300 n/a H R1b1a1b1a1a2c1a3a2a1b1a1b osteological remain 1 GDF1348 Shotgun half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 52.00599 408977 n/a 0.1078131524575097 0.005634 4.270182e-15 ANGSD[v0.935] Nr Snps (per library): 1023. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB50940;ERS10593628;ERR8613034 S. Rottier FischerIScience2022 n/a n/a GDF1348 0.33620544672179 0.39983484457802504 0.0037242211688210004 0.0050016676756330005 +GDF1264_MNT M French_IA_Paris_Basin n/a GDF1264 n/a n/a n/a n/a n/a France FR France, Aube, Barbuise les Grèves de Frécul les Grèves de Frécul 48.55 3.5833 contextual n/a n/a n/a 500 400 300 n/a H2b R1b1a1b1a1a2 osteological remain 1 GDF1264 Shotgun half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 66.305023 525495 n/a 0.0958536570172676 0.005101 4.475116e-15 ANGSD[v0.935] Nr Snps (per library): 2201. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB50940;ERS10593626;ERR8613032 S. Rottier FischerIScience2022 n/a n/a GDF1264 0.326942311776445 0.38285440164984 0.0029051346883480003 0.003871426972577 +GDF1231_MNT F French_IA_Paris_Basin n/a GDF1231 n/a n/a n/a n/a n/a France FR France, Aube, Barbuise les Grèves de Frécul les Grèves de Frécul 48.55 3.5833 contextual n/a n/a n/a 500 400 300 n/a HV0 n/a osteological remain 1 GDF1231 Shotgun half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 57.829828 616663 n/a 0.0770667575759406 0.3458799999999999 1.1092300000000001e-12 ANGSD[v0.935] Nr Snps (per library): 7170. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB50940;ERS10593625;ERR8613031 S. Rottier FischerIScience2022 n/a n/a GDF1231 0.8379434794422981 0.006086319425069001 0.004780385319893 0.000493708346235 +GDF1349B_MNT F French_IA_Paris_Basin n/a GDF1349B n/a n/a n/a n/a n/a France FR France, Aube, Barbuise les Grèves de Frécul les Grèves de Frécul 48.55 3.5833 contextual n/a n/a n/a 500 400 300 n/a T1a4 n/a osteological remain 1 GDF1349B Shotgun half ds haploid https://github.com/nf-core/eager/releases/tag/2.4.6 36.872557 882548 n/a 0.2418592065365107 0.256019 4.753463e-12 ANGSD[v0.935] Nr Snps (per library): 17959. Estimate and error are weighted means of values per library. Libraries with fewer than 100 SNPs used in contamination estimation were excluded. PRJEB50940;ERS10593629;ERR8613035 S. Rottier FischerIScience2022 n/a n/a GDF1349B 0.928644935148734 0.005939640099947001 0.0037510858054680004 0.000362851857817