Singularity.1.6-jre8-cuda+sundials-2.7.0

Bootstrap: docker
From: ubuntu:bionic

%labels
Maintainer eric.burgueno@plantandfood.co.nz
Version 1.6

%post
  ## Download prerequisites
  apt-get update
  apt-get -y install --no-install-recommends libcommons-math3-java libnvidia-compute-430 ocl-icd-libopencl1 openjdk-8-jdk wget
  apt-get -y install cmake python patchelf

  ## Install
  cd /opt
  wget http://ufgb966.forst.uni-goettingen.de/GroIMP/GroIMP-1.6-all.deb
  apt-get -y install ./GroIMP-1.6-all.deb
  ln -s /usr/share/java /usr/share/GroIMP/ext

  # Sundials
  wget https://computing.llnl.gov/projects/sundials/download/sundials-2.7.0.tar.gz
  tar -xzf sundials-2.7.0.tar.gz
  mkdir sundials-2.7.0/build
  cd sundials-2.7.0/build
  cmake ../
  make
  make install
  
  # Hacks. I hate hacks.
  cd /usr/local/lib
  for i in arkode cvode cvodes ida idas kinsol nvecserial; do
    patchelf --set-soname sundials_$i libsundials_${i}.so
  done
    
  ## Cleanup
  rm -f GroIMP-1.6-all.deb
  apt-get -y remove cmake patchelf wget
  apt-get -y autoremove

%runscript
  exec /usr/bin/groimp "$@"