Singularity.4.2.0

Bootstrap: docker
From: ubuntu:bionic

%labels
Maintainer eric.burgueno@plantandfood.co.nz
Version 4.2.0

%post
  ## Download build prerequisites
  apt-get update
  apt-get -y install wget

  cd /opt
  wget https://github.com/biocore/sortmerna/releases/download/v4.2.0/sortmerna-4.2.0-Linux.sh
  mkdir sortmerna-4.2.0-Linux
  bash sortmerna-4.2.0-Linux.sh --skip-license --prefix=sortmerna-4.2.0-Linux

## Cleanup
  rm -rf /opt/sortmerna-4.2.0-Linux.sh
  apt-get -y remove wget
  apt-get -y autoremove
  apt-get -y clean all

%runscript
  exec /opt/sortmerna-4.2.0-Linux/bin/sortmerna "$@"