searchPfam fails to parse XML

[NicholasMcCarthy]

The searchPfam function appears to be broken as a result of a URL change.

For example

searchPfam('PF00047') 

Results in:

ValueError: failed to parse results XML, check URL: https://pfam-legacy.xfam.org/protein/PF00047?output=xml

[jamesmkrieger]

We have updated this is development code but it hasn’t made it to a release yet, so sorry.

Please clone or download prody from GitHub and install that with the following commands

cd ProDy
python setup.py build_ext --inplace --force
pip install -Ue .