jhu-indexes.yaml

Name: Cloud Indexes for Genomic Analyses
Description: Genomic tools use reference databases as indexes to operate quickly and efficiently, analogous to how web search engines use indexes for fast querying. Here, we aggregate genomic, pan-genomic and metagenomic indexes for analysis of sequencing data.
Documentation: https://benlangmead.github.io/aws-indexes/
Contact: https://github.com/BenLangmead/aws-indexes/issues
ManagedBy: Langmead Lab at Johns Hopkins University & Kim Lab at University of Texas Southwestern
UpdateFrequency: As new data becomes available; roughly quarterly
Tags:
  - aws-pds
  - genomic
  - bioinformatics
  - biology
  - whole genome sequencing
  - medicine
  - reference index
  - mapping
License: Public Domain
Resources:
  - Description: This bucket contains genomic indexes for Bowtie, Kraken, HISAT, and Centrifuge.
    ARN: arn:aws:s3:::genome-idx
    Region: us-east-1
    Type: S3 Bucket
DataAtWork:
   Tutorials:
     - Title: Table of contents for tutorials for constituent tools
       URL: https://benlangmead.github.io/aws-indexes/tutorial
       AuthorName: Ben Langmead
       AuthorURL: https://benlangmead.github.io/aws-indexes
   Publications:
     - Title: Reducing reference bias using multiple population reference genomes
       URL: https://www.biorxiv.org/content/10.1101/2020.03.03.975219v4.full.pdf
       AuthorName: Chen et al (2020)