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Bump cython, fixes for tests, and fixes for deprecation warnings #332

Bump cython, fixes for tests, and fixes for deprecation warnings

Bump cython, fixes for tests, and fixes for deprecation warnings #332

Workflow file for this run

name: Tests
on:
pull_request:
schedule:
# Run test at 0400 UTC on Saturday.
- cron: '0 4 * * 6'
# Run test at 0400 UTC on day 1 of the month to create auto-generated
# code afresh and cache it.
- cron: '0 4 1 * *' # Ref https://crontab.guru/#0_4_1_*_*
jobs:
tests:
strategy:
fail-fast: false
matrix:
os: [ubuntu-latest, macos-latest, windows-latest]
python-version: [3.11]
runs-on: ${{ matrix.os }}
defaults:
run:
shell: bash -l {0}
steps:
- uses: actions/checkout@v4
- name: Set up Python ${{ matrix.python-version }}
uses: conda-incubator/setup-miniconda@v3
with:
auto-update-conda: true
python-version: ${{ matrix.python-version }}
channels: conda-forge
- name: Install dependencies on Linux/MacOS
run: |
conda info
conda install -c conda-forge pocl pyopencl
python -c 'import pyopencl as cl'
if: ${{ runner.os != 'Windows' }}
- name: Setup compyle config on MacOS to use openmp enabled clang from homebrew
run: |
brew install libomp
mkdir -p ~/.compyle
touch ~/.compyle/config.py
echo "import os" >> ~/.compyle/config.py
echo "os.environ['CC'] = '$(brew --prefix llvm@15)/bin/clang'" >> ~/.compyle/config.py
echo "os.environ['CXX'] = '$(brew --prefix llvm@15)/bin/clang++'" >> ~/.compyle/config.py
export CPPFLAGS="-I$(brew --prefix libomp)/include -I$(brew --prefix llvm@15)/include -Xclang -fopenmp"
export LDFLAGS="-L$(brew --prefix libomp)/lib -L$(brew --prefix llvm@15)/lib -lomp"
python -c "import os; OMP_CFLAGS=os.environ.get('CPPFLAGS').split(' '); print(f'{OMP_CFLAGS=}')" >> ~/.compyle/config.py
python -c "import os; OMP_LINK=os.environ.get('LDFLAGS').split(' '); print(f'{OMP_LINK=}')" >> ~/.compyle/config.py
cat ~/.compyle/config.py
if: ${{ runner.os == 'macOS' }}
- name: Install dependencies
run: |
conda info
conda install -c conda-forge numpy cython h5py
python -m pip install --upgrade pip setuptools wheel
python -m pip install https://github.com/pypr/cyarray/zipball/master
python -m pip install https://github.com/pypr/compyle/zipball/master
python -m pip install -r requirements.txt -r requirements-test.txt
python setup.py develop
python -m pip list
# Cache auto-generated code. Cache key changes every month.
# Thanks https://stackoverflow.com/a/60942437
- name: Get month to use as cache key.
id: month
run: echo "month==$(date +'%m')" >> $GITHUB_OUTPUT
- name: Deal with auto-generated code cache
uses: actions/cache@v4
with:
path: |
~/.pysph
~/.compyle
key: ${{ runner.os }}-${{ steps.month.outputs.month }}
- name: Run tests
run: |
python -m pytest -v -m 'not slow or slow'