Sentieon DNAseq basic pipeline
Authors: Massimiliano Volpe, Jyotirmoy Das
Email: [email protected], [email protected]
Date: 11/02/2021
Developed on behalf of the Bioinformatics Core Facility, Linköping University
- Raw data should be stored in the same folder
- Paths to raw data and reference must be set in the config.json file
- Fastq filename suffix must be set in the config.json file, e.g.:
/path_to_fastq/FR1_S16_L001_R1_001.fastq.gz --> "_L001_R1_001.fastq.gz"
/path_to_fastq/FR1_S16_L001_R2_001.fastq.gz --> "_L001_R2_001.fastq.gz"