code_test.yaml

# This is a basic workflow to help you get started with Actions

name: pytest

# Controls when the action will run.
on:
  # Triggers the workflow on push or pull request events but only for the dev branch
  push:
    branches:
     - master
     - develop
  pull_request:
    branches:
      - master
      - develop

  # Allows you to run this workflow manually from the Actions tab
  workflow_dispatch:

# A workflow run is made up of one or more jobs that can run sequentially or in parallel
jobs:
  dry_run: # health check job for testing and code formatting check
    name: pytest
    runs-on: ubuntu-latest # os for running the job
    strategy:
      fail-fast: false
      matrix:
        python-version: [ 3.8 ]
    steps:
      - name: Checkout code # checking our the code at current commit that triggers the workflow
        uses: actions/checkout@v2
      - name: Cache dependency # caching dependency will make our build faster.
        uses: actions/cache@v2 # for more info checkout pip section documentation at https://github.com/actions/cache
        with:
          path: ~/.cache/pip
          key: ${{ runner.os }}-pip-${{ hashFiles('**/requirements.txt') }}
          restore-keys: |
            ${{ runner.os }}-pip-
      - name: Set up Python ${{ matrix.python-version }}
        uses: actions/setup-python@v2
        with:
            python-version: ${{ matrix.python-version }}
      - name: Check Python version # checking the python version to see if 3.x is installed.
        run: python --version
      - name: Install requirements # install application requirements
        run: pip install pytest pandas
      ## Test Twist_DNA
      # Test fgbio option

      - name: run pytest
        run: pytest tests/lib/python/test_utils.py