You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
CGI biomarkers.tsv contains two columns Match and BioM.
we used to filter biomarkers for BioM == "complete", now we filter for Match == "YES", but we need both!
BioM describes a match between query and alteration of the biomarker
Match only refers to the cancer type!
To include off-label use (level A evidences for different tumor), filter hard by Match == "YES" and then adjust Evidence level from A->C for evidences where Match == "NO" and level == "A"
Best: refactor, do not change evidence levels, but gather evidence (cgi and civic) and check for different tumor type only in tier assignment
Command used and terminal output
No response
System information
No response
The text was updated successfully, but these errors were encountered:
Description of the bug
CGI biomarkers.tsv contains two columns
Match
andBioM
.BioM == "complete"
, now we filter forMatch == "YES"
, but we need both!BioM
describes a match between query and alteration of the biomarkerMatch
only refers to the cancer type!Match == "YES"
and then adjust Evidence level from A->C for evidences whereMatch == "NO" and level == "A"
Best: refactor, do not change evidence levels, but gather evidence (cgi and civic) and check for different tumor type only in tier assignment
Command used and terminal output
No response
System information
No response
The text was updated successfully, but these errors were encountered: