From cb47d4049d2a00f3cfdfe6c2c6a834217d608e90 Mon Sep 17 00:00:00 2001 From: Liz Gehret <54517601+lizgehret@users.noreply.github.com> Date: Wed, 26 Jun 2024 15:31:20 -0700 Subject: [PATCH] MAINT: removes old classifier URLs that are no longer being used (#155) --- urls/_2024.py | 30 ------------------------------ urls/_classifiers.py | 12 ++++++++++++ 2 files changed, 12 insertions(+), 30 deletions(-) diff --git a/urls/_2024.py b/urls/_2024.py index 5503f21..50c0c8c 100644 --- a/urls/_2024.py +++ b/urls/_2024.py @@ -283,18 +283,6 @@ # 2024.5 - # these are only used in the deprecated resources page - '2024.5/common/sepp-refs-silva-128.qza': - 'https://s3-us-west-2.amazonaws.com/qiime2-data/2024.5/common/sepp-refs-silva-128.qza', - '2024.5/common/silva-138-99-seqs-515-806.qza': - 'https://qiime2-data.s3-us-west-2.amazonaws.com/2024.5/common/silva-138-99-seqs-515-806.qza', - '2024.5/common/silva-138-99-seqs.qza': - 'https://qiime2-data.s3-us-west-2.amazonaws.com/2024.5/common/silva-138-99-seqs.qza', - '2024.5/common/silva-138-99-tax-515-806.qza': - 'https://qiime2-data.s3-us-west-2.amazonaws.com/2024.5/common/silva-138-99-tax-515-806.qza', - '2024.5/common/silva-138-99-tax.qza': - 'https://qiime2-data.s3-us-west-2.amazonaws.com/2024.5/common/silva-138-99-tax.qza', - # these are used in tutorials '2024.5/common/gg-13-8-99-515-806-nb-classifier.qza': 'https://s3-us-west-2.amazonaws.com/qiime2-data/2024.5/common/gg-13-8-99-515-806-nb-classifier.qza', @@ -506,24 +494,6 @@ # 2024.10 - # these are only used in the deprecated resources page - '2024.10/common/sepp-refs-silva-128.qza': - 'https://s3-us-west-2.amazonaws.com/qiime2-data/2024.10/common/sepp-refs-silva-128.qza', - '2024.10/common/silva-138-99-seqs-515-806.qza': - 'https://qiime2-data.s3-us-west-2.amazonaws.com/2024.10/common/silva-138-99-seqs-515-806.qza', - '2024.10/common/silva-138-99-seqs.qza': - 'https://qiime2-data.s3-us-west-2.amazonaws.com/2024.10/common/silva-138-99-seqs.qza', - '2024.10/common/silva-138-99-tax-515-806.qza': - 'https://qiime2-data.s3-us-west-2.amazonaws.com/2024.10/common/silva-138-99-tax-515-806.qza', - '2024.10/common/silva-138-99-tax.qza': - 'https://qiime2-data.s3-us-west-2.amazonaws.com/2024.10/common/silva-138-99-tax.qza', - - # these are used in tutorials - '2024.10/common/gg-13-8-99-515-806-nb-classifier.qza': - 'https://s3-us-west-2.amazonaws.com/qiime2-data/2024.10/common/gg-13-8-99-515-806-nb-classifier.qza', - '2024.10/common/sepp-refs-gg-13-8.qza': - 'https://s3-us-west-2.amazonaws.com/qiime2-data/2024.10/common/sepp-refs-gg-13-8.qza', - '2024.10/tutorials/atacama-soils/10p/barcodes.fastq.gz': 'https://s3-us-west-2.amazonaws.com/qiime2-data/2024.10/tutorials/atacama-soils/10p/barcodes.fastq.gz', '2024.10/tutorials/atacama-soils/10p/forward.fastq.gz': diff --git a/urls/_classifiers.py b/urls/_classifiers.py index b86b608..56ebf4f 100644 --- a/urls/_classifiers.py +++ b/urls/_classifiers.py @@ -9,6 +9,14 @@ # flake8: noqa MAP_CLASSIFIERS = { + # sklearn 0.21.2 + + # SEPP reference databases + 'classifiers/sklearn-0.21.2/sepp-ref-dbs/sepp-refs-gg-13-8.qza': + 'https://s3-us-west-2.amazonaws.com/qiime2-data/classifiers/sklearn-0.21.2/sepp-ref-dbs/sepp-refs-gg-13-8.qza', + 'classifiers/sklearn-0.21.2/sepp-ref-dbs/sepp-refs-silva-128.qza': + 'https://s3-us-west-2.amazonaws.com/qiime2-data/classifiers/sklearn-0.21.2/sepp-ref-dbs/sepp-refs-silva-128.qza', + # sklearn 0.24.1 # Greengenes @@ -25,6 +33,10 @@ # sklearn 1.4.2 + # Greengenes + 'classifiers/sklearn-1.4.2/greengenes/gg-13-8-99-515-806-nb-classifier.qza': + 'https://s3-us-west-2.amazonaws.com/qiime2-data/classifiers/sklearn-1.4.2/greengenes/gg-13-8-99-515-806-nb-classifier.qza', + # Greengenes 2 'classifiers/sklearn-1.4.2/greengenes2/2022.10.backbone.full-length.nb.sklearn-1.4.2.qza': 'https://s3-us-west-2.amazonaws.com/qiime2-data/classifiers/sklearn-1.4.2/greengenes2/2022.10.backbone.full-length.nb.sklearn-1.4.2.qza',