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performance issues with cluster-features-open-reference #40

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nbokulich opened this issue Dec 18, 2017 · 0 comments
Open

performance issues with cluster-features-open-reference #40

nbokulich opened this issue Dec 18, 2017 · 0 comments
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performance

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@nbokulich
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nbokulich commented Dec 18, 2017 •
edited by Mestabrook3
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Bug Description
Runtimes seem to be very slow relative to closed and de-novo on the same datasets.

This is probably the intermediate steps in the pipeline. One good indicator is that the bulk of open does not appear to run in parallel with multiple threads are requested (suggesting that it is hanging on those steps).

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the intermediate steps
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@jairideout @nbokulich