The input dataset (gsul.txt) contains 100 protein-coding genes from the genome of Galdieria sulphuraria, a unicellular red alga found in hot sulphur springs. The genome of G. sulphuraria and its HGT pattern was reported in the following paper:
Schönknecht, G. et al. Gene transfer from bacteria and archaea facilitated evolution of an extremophilic eukaryote. Science 339, 1207-10 (2013)
To run this example, execute:
hgtector search -i gsul.txt -o .
hgtector analyze -i gsul.tsv -o .The sample output files are provided in output. They were generated on 2019-10-16, based on the NCBI nr database by time. The file hgts/gsul.txt was manually modified to include potential donors (a feature of more recent versions of HGTector).
Detailed instruction for running this example and interpreting outputs is provided in first run.