From 9ed695835c09d30b69f46a6a0ff37b2a09cf7eaa Mon Sep 17 00:00:00 2001
From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com>
Date: Thu, 26 Sep 2024 15:22:57 +0300
Subject: [PATCH 1/3] Bump pymatching from 2.2.0 to 2.2.1 (#307)

* Bump pymatching from 2.2.0 to 2.2.1

Bumps [pymatching](https://github.com/oscarhiggott/PyMatching) from 2.2.0 to 2.2.1.
- [Release notes](https://github.com/oscarhiggott/PyMatching/releases)
- [Commits](https://github.com/oscarhiggott/PyMatching/compare/v2.2.0...v2.2.1)

---
updated-dependencies:
- dependency-name: pymatching
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>

* [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci

---------

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
---
 poetry.lock      | 61 ++++++++++++++++++++++--------------------------
 requirements.txt | 59 +++++++++++++++++++++-------------------------
 2 files changed, 55 insertions(+), 65 deletions(-)

diff --git a/poetry.lock b/poetry.lock
index 1679ab1d..3f24cd07 100644
--- a/poetry.lock
+++ b/poetry.lock
@@ -2460,48 +2460,43 @@ testutils = ["gitpython (>3)"]
 
 [[package]]
 name = "pymatching"
-version = "2.2.0"
+version = "2.2.1"
 description = "A package for decoding quantum error correcting codes using minimum-weight perfect matching."
 optional = false
 python-versions = ">=3.7"
 files = [
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-    {file = "PyMatching-2.2.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:72b3acd0160b49b61d5beaf184cf48edd3ee0eb16fc4fc379486f4a767cd565c"},
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+    {file = "PyMatching-2.2.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:d4397d78944e99b3ea6bc80512795079821d434a0e803ea37c3ab9f98c527cb3"},
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+    {file = "pymatching-2.2.1.tar.gz", hash = "sha256:9e5bce6469010c517cebcd22f2d287235f37257664abbd00d9479a7480bbcdbd"},
 ]
 
 [package.dependencies]
 matplotlib = "*"
 networkx = "*"
-numpy = "*"
+numpy = "==1.*"
 scipy = "*"
 
 [package.extras]
diff --git a/requirements.txt b/requirements.txt
index 154f874d..f5a2debf 100644
--- a/requirements.txt
+++ b/requirements.txt
@@ -352,38 +352,33 @@ pillow==10.3.0 ; python_version >= "3.10" and python_version < "4.0" \
     --hash=sha256:f0d0591a0aeaefdaf9a5e545e7485f89910c977087e7de2b6c388aec32011e9f \
     --hash=sha256:fdcbb4068117dfd9ce0138d068ac512843c52295ed996ae6dd1faf537b6dbc27 \
     --hash=sha256:ff61bfd9253c3915e6d41c651d5f962da23eda633cf02262990094a18a55371a
-pymatching==2.2.0 ; python_version >= "3.10" and python_version < "4.0" \
-    --hash=sha256:040881cab6cac71be54851b1ef0c0ad296fb6f6a42ad02246bfdc63d50fc50a7 \
-    --hash=sha256:050b530f0854d424cb5ba4450f9c5a4283e0d9bb5ef5b849b37ac5312dcca08d \
-    --hash=sha256:1b99299344a62c243e1d2d9012a49976761c42dc24a9448f6972436209d6b6cd \
-    --hash=sha256:2812c2602c9f1c91e73920fecbd1916b941e911538b4495265bfdc3b3e066fbe \
-    --hash=sha256:2ef156437f345819c881d3aebb339c784c42f55438f07007ad24c05bb22dd61d \
-    --hash=sha256:30b2cab3c4159d4accf87025a62e2e4bb9b45df630c8afa01f2d131734043a57 \
-    --hash=sha256:3136194ed00c432f4890d0e6224cd857b45013aefdecf1bad3a30a93d8da2207 \
-    --hash=sha256:353b4b0491aaf71a3ca72714bb996bdb9d8e2bf4803cf905455332f5c2d22779 \
-    --hash=sha256:3fa41b776e41c2687d76c05d68dbf3b5c4cabf942b6a5051eef41d6a8590fb21 \
-    --hash=sha256:57acf834e2ba95c412060c63f70f44b0210bdd2f52395f4c9fb9b37c68d2f35c \
-    --hash=sha256:580b9c9bb33c883b25e139bb9c2649bb1f245fe7c6b514dfb788e395c9276a0e \
-    --hash=sha256:5d2fe3f8a0665d40fb3e5f3115913285833434c9eb36b11740bfaede29fa7941 \
-    --hash=sha256:5f1dc0efd6cd1634f72d7ca2b260b7b287a996460075861e27af89b078eb1293 \
-    --hash=sha256:634b2a7316e835da9def77d367cfc8dce680e44daa1643e365659e90d8f91c93 \
-    --hash=sha256:6ab55daed4d0c35a96e5eab3162c0ffe9c5d7d13093db9d4d14bac4d6851c754 \
-    --hash=sha256:72b3acd0160b49b61d5beaf184cf48edd3ee0eb16fc4fc379486f4a767cd565c \
-    --hash=sha256:749d2ddf85e18788a5b063b88340ef5674f68d3ba82180915e05c0401182d5fb \
-    --hash=sha256:7bc5b967002e941178c50cc79124688f7f4a2454d5de87678b074ed2d2cbc236 \
-    --hash=sha256:a49213fcafe5ca07aaf6e05982cba612b65e0a2560c99996b8754bf8e81d5fc8 \
-    --hash=sha256:bf851a139a136ccbab3024bab476ecbd22ce44f4c4848f9b189ff1bf57d9adb1 \
-    --hash=sha256:d08710cfc734ce8214ea242a7f1c8547105b37166ba4b61c34636bbafce967be \
-    --hash=sha256:d8046f5ef970c27b20d8dd55a01b89509d0eb4398abaf2ef725d77ef2b98d65a \
-    --hash=sha256:da06e0195a918b8c304d1cbc0d37968b863d97bbd46887bfabf8c1d96d23e27f \
-    --hash=sha256:db67924b7603af9d845423b037048f982c6cc687e582239f3640a4e1b0e3caba \
-    --hash=sha256:e831cf0f68b5f76cd6f1e2458f2dd5937d41b34ecc002f534eeb7e6b2db8f755 \
-    --hash=sha256:ecb65e6897ce0ce3c841771e6d4d9d22aafbc174185f2d1a6441c310d1783059 \
-    --hash=sha256:ee1a5e8ed401309959baac06c784bf044cc3940b06ddfacf2a61579a8c0c70e3 \
-    --hash=sha256:f11f5ea748fd69c28c93301f8aa59c6d5be6a8caec313cebc6089e29dcf5168f \
-    --hash=sha256:f239f77d7c0968606b8b4d1e6ca8e86b17be59ecee236538b6e61dea0affa44d \
-    --hash=sha256:fd5688f18d63e7981656f3c8f9ffef4ef22a74228b10e47100311a97f0184cb7 \
-    --hash=sha256:fe02d4fd348ce7b8613cb7c995a2cc0479a7a46f233d25810d522c5cad225251
+pymatching==2.2.1 ; python_version >= "3.10" and python_version < "4.0" \
+    --hash=sha256:0a5cf7b5f02adb2fd73dea95723b44a766ea08e603c5eba2e935b5b99b58524e \
+    --hash=sha256:1229e634c9d4bd9601412754728e05500a5b2b93789a00e05c38ecf25fdc360f \
+    --hash=sha256:21a92e5f1c5a8f5b9a4c9a8792cf1271f1f11619ed8840c0b1c60f7962a68e5d \
+    --hash=sha256:2a1a550e859a4a64287253c837e0509529f5be09035edc8fb307a75cf6c68ffd \
+    --hash=sha256:32022881d7254c043ed2bbf6bfbdf39f47815f2310e476752931d186e06c47dc \
+    --hash=sha256:3836cc4e3bdf9d280b0004e65b3a62729706e30ad4388ca4e843a9f526ab5684 \
+    --hash=sha256:69267d619ddc78e3a428f9dd9b83b23d3e1434edb3b1b010188804ad8c921861 \
+    --hash=sha256:6bfbd14247a4ab40f30ab1c47ea772422be5fe7b59ef607c8bea1172c76b497d \
+    --hash=sha256:6c4591f0fb523d874776aa9fa95b4a4a3e0761c19c1b769cd492fd6804c075ab \
+    --hash=sha256:70366893d6f21cb6494a2b20129c3a77fe916f3c836527798f9b82588d1325c0 \
+    --hash=sha256:84fe7cc67935ee987302c86f0b5f34de1a4c87a94925e5e407f32c31ed1b5bf5 \
+    --hash=sha256:8dfe4232f99e18f4d600d712d9403f00d497b86a992fa31eafeaba19f8014fbf \
+    --hash=sha256:92980c891c23ca1d597ec359dfae3b609a13ad276f76f2c27b730742719b7e66 \
+    --hash=sha256:9c152a6460693f3160b7b411457f490e6de337f1c7972c181467e08f9b5377f2 \
+    --hash=sha256:9e5bce6469010c517cebcd22f2d287235f37257664abbd00d9479a7480bbcdbd \
+    --hash=sha256:a4f23eb858fb69ae2caba2ce5bab9aea699f4d28ad5d1e2462ced745debd1a31 \
+    --hash=sha256:aecc1ba34b9d98c82faa2ca318a877a47429116e2f33260d640d6e35e2a3acac \
+    --hash=sha256:c27e033cc409807da64926e0fcbd939bd3e96c4d6eaa59daf0d9269f9c32feb9 \
+    --hash=sha256:c78274f561aa1e71e7dca60be93fba91685d82147265fabe3dcfac33bde05013 \
+    --hash=sha256:ce80bc59ec9c83974bc51cd658578695b3b41ad34eac6beeb11c7f127d2e8d45 \
+    --hash=sha256:d41c7721d41c6da218a8d09a6f972e1987300ad782a5b0dcec1e41a616995d5c \
+    --hash=sha256:d4397d78944e99b3ea6bc80512795079821d434a0e803ea37c3ab9f98c527cb3 \
+    --hash=sha256:d941aa41ee0a73b686c681b56e23135d6b58f531766b46e151c7a6e7b3edaad5 \
+    --hash=sha256:e046912fe1a25e704b2fa78fc2be21037a7d0f6cf4d8b89a831715381ad3c130 \
+    --hash=sha256:eba00ff3506a626aa26c8019fa63c3a7c65704d8323af3e0a5bc82271fecace5 \
+    --hash=sha256:f3d5a3b90b75cbfab70fd4e9b20d077b440697adfcfb993f7b4270c6f48c3f40
 pyparsing==3.1.1 ; python_version >= "3.10" and python_version < "4.0" \
     --hash=sha256:32c7c0b711493c72ff18a981d24f28aaf9c1fb7ed5e9667c9e84e3db623bdbfb \
     --hash=sha256:ede28a1a32462f5a9705e07aea48001a08f7cf81a021585011deba701581a0db

From 024bf6554f21c69af07aa5273aa7febd1e8175b3 Mon Sep 17 00:00:00 2001
From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com>
Date: Thu, 3 Oct 2024 11:03:17 -0400
Subject: [PATCH 2/3] Bump pytest from 7.4.4 to 8.3.3 (#309)

Bumps [pytest](https://github.com/pytest-dev/pytest) from 7.4.4 to 8.3.3.
- [Release notes](https://github.com/pytest-dev/pytest/releases)
- [Changelog](https://github.com/pytest-dev/pytest/blob/main/CHANGELOG.rst)
- [Commits](https://github.com/pytest-dev/pytest/compare/7.4.4...8.3.3)

---
updated-dependencies:
- dependency-name: pytest
  dependency-type: direct:development
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
---
 poetry.lock    | 22 +++++++++++-----------
 pyproject.toml |  2 +-
 2 files changed, 12 insertions(+), 12 deletions(-)

diff --git a/poetry.lock b/poetry.lock
index 3f24cd07..ad3d61e1 100644
--- a/poetry.lock
+++ b/poetry.lock
@@ -2285,13 +2285,13 @@ test = ["appdirs (==1.4.4)", "covdefaults (>=2.3)", "pytest (>=7.4.3)", "pytest-
 
 [[package]]
 name = "pluggy"
-version = "1.4.0"
+version = "1.5.0"
 description = "plugin and hook calling mechanisms for python"
 optional = false
 python-versions = ">=3.8"
 files = [
-    {file = "pluggy-1.4.0-py3-none-any.whl", hash = "sha256:7db9f7b503d67d1c5b95f59773ebb58a8c1c288129a88665838012cfb07b8981"},
-    {file = "pluggy-1.4.0.tar.gz", hash = "sha256:8c85c2876142a764e5b7548e7d9a0e0ddb46f5185161049a79b7e974454223be"},
+    {file = "pluggy-1.5.0-py3-none-any.whl", hash = "sha256:44e1ad92c8ca002de6377e165f3e0f1be63266ab4d554740532335b9d75ea669"},
+    {file = "pluggy-1.5.0.tar.gz", hash = "sha256:2cffa88e94fdc978c4c574f15f9e59b7f4201d439195c3715ca9e2486f1d0cf1"},
 ]
 
 [package.extras]
@@ -2518,13 +2518,13 @@ diagrams = ["jinja2", "railroad-diagrams"]
 
 [[package]]
 name = "pytest"
-version = "7.4.4"
+version = "8.3.3"
 description = "pytest: simple powerful testing with Python"
 optional = false
-python-versions = ">=3.7"
+python-versions = ">=3.8"
 files = [
-    {file = "pytest-7.4.4-py3-none-any.whl", hash = "sha256:b090cdf5ed60bf4c45261be03239c2c1c22df034fbffe691abe93cd80cea01d8"},
-    {file = "pytest-7.4.4.tar.gz", hash = "sha256:2cf0005922c6ace4a3e2ec8b4080eb0d9753fdc93107415332f50ce9e7994280"},
+    {file = "pytest-8.3.3-py3-none-any.whl", hash = "sha256:a6853c7375b2663155079443d2e45de913a911a11d669df02a50814944db57b2"},
+    {file = "pytest-8.3.3.tar.gz", hash = "sha256:70b98107bd648308a7952b06e6ca9a50bc660be218d53c257cc1fc94fda10181"},
 ]
 
 [package.dependencies]
@@ -2532,11 +2532,11 @@ colorama = {version = "*", markers = "sys_platform == \"win32\""}
 exceptiongroup = {version = ">=1.0.0rc8", markers = "python_version < \"3.11\""}
 iniconfig = "*"
 packaging = "*"
-pluggy = ">=0.12,<2.0"
-tomli = {version = ">=1.0.0", markers = "python_version < \"3.11\""}
+pluggy = ">=1.5,<2"
+tomli = {version = ">=1", markers = "python_version < \"3.11\""}
 
 [package.extras]
-testing = ["argcomplete", "attrs (>=19.2.0)", "hypothesis (>=3.56)", "mock", "nose", "pygments (>=2.7.2)", "requests", "setuptools", "xmlschema"]
+dev = ["argcomplete", "attrs (>=19.2)", "hypothesis (>=3.56)", "mock", "pygments (>=2.7.2)", "requests", "setuptools", "xmlschema"]
 
 [[package]]
 name = "pytest-cov"
@@ -3589,4 +3589,4 @@ files = [
 [metadata]
 lock-version = "2.0"
 python-versions = ">=3.10,<4.0"
-content-hash = "4f3219f9b5c1057c1cf6fbc4a390555b0be1410fa21015316ac951649cd175c4"
+content-hash = "b4dd361c9385f4b9bc84509d0caf7c52cfe1b84371f487e6d64a14c421f81399"
diff --git a/pyproject.toml b/pyproject.toml
index 0474116c..86ca5aac 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -42,7 +42,7 @@ optional = true
 [tool.poetry.group.test.dependencies]
 coverage = ">=6.4.4,<8.0.0"
 pytest-cov = ">=3,<6"
-pytest = "^7.3.0"
+pytest = ">=7.3,<9.0"
 py = "^1.11.0"
 
 [tool.poetry.group.docs]

From 034bf9462bad4e5dc173e5598175e86f02963954 Mon Sep 17 00:00:00 2001
From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com>
Date: Mon, 7 Oct 2024 12:22:33 -0400
Subject: [PATCH 3/3] Bump setuptools from 70.3.0 to 75.1.0 (#310)

Bumps [setuptools](https://github.com/pypa/setuptools) from 70.3.0 to 75.1.0.
- [Release notes](https://github.com/pypa/setuptools/releases)
- [Changelog](https://github.com/pypa/setuptools/blob/main/NEWS.rst)
- [Commits](https://github.com/pypa/setuptools/compare/v70.3.0...v75.1.0)

---
updated-dependencies:
- dependency-name: setuptools
  dependency-type: direct:development
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
---
 poetry.lock    | 17 +++++++++++------
 pyproject.toml |  2 +-
 2 files changed, 12 insertions(+), 7 deletions(-)

diff --git a/poetry.lock b/poetry.lock
index ad3d61e1..5d217d7b 100644
--- a/poetry.lock
+++ b/poetry.lock
@@ -3089,18 +3089,23 @@ win32 = ["pywin32"]
 
 [[package]]
 name = "setuptools"
-version = "70.3.0"
+version = "75.1.0"
 description = "Easily download, build, install, upgrade, and uninstall Python packages"
 optional = false
 python-versions = ">=3.8"
 files = [
-    {file = "setuptools-70.3.0-py3-none-any.whl", hash = "sha256:fe384da74336c398e0d956d1cae0669bc02eed936cdb1d49b57de1990dc11ffc"},
-    {file = "setuptools-70.3.0.tar.gz", hash = "sha256:f171bab1dfbc86b132997f26a119f6056a57950d058587841a0082e8830f9dc5"},
+    {file = "setuptools-75.1.0-py3-none-any.whl", hash = "sha256:35ab7fd3bcd95e6b7fd704e4a1539513edad446c097797f2985e0e4b960772f2"},
+    {file = "setuptools-75.1.0.tar.gz", hash = "sha256:d59a21b17a275fb872a9c3dae73963160ae079f1049ed956880cd7c09b120538"},
 ]
 
 [package.extras]
-doc = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "pygments-github-lexers (==0.0.5)", "pyproject-hooks (!=1.1)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-favicon", "sphinx-inline-tabs", "sphinx-lint", "sphinx-notfound-page (>=1,<2)", "sphinx-reredirects", "sphinxcontrib-towncrier"]
-test = ["build[virtualenv] (>=1.0.3)", "filelock (>=3.4.0)", "importlib-metadata", "ini2toml[lite] (>=0.14)", "jaraco.develop (>=7.21)", "jaraco.envs (>=2.2)", "jaraco.path (>=3.2.0)", "jaraco.test", "mypy (==1.10.0)", "packaging (>=23.2)", "pip (>=19.1)", "pyproject-hooks (!=1.1)", "pytest (>=6,!=8.1.*)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-home (>=0.5)", "pytest-mypy", "pytest-perf", "pytest-ruff (>=0.3.2)", "pytest-subprocess", "pytest-timeout", "pytest-xdist (>=3)", "tomli", "tomli-w (>=1.0.0)", "virtualenv (>=13.0.0)", "wheel"]
+check = ["pytest-checkdocs (>=2.4)", "pytest-ruff (>=0.2.1)", "ruff (>=0.5.2)"]
+core = ["importlib-metadata (>=6)", "importlib-resources (>=5.10.2)", "jaraco.collections", "jaraco.functools", "jaraco.text (>=3.7)", "more-itertools", "more-itertools (>=8.8)", "packaging", "packaging (>=24)", "platformdirs (>=2.6.2)", "tomli (>=2.0.1)", "wheel (>=0.43.0)"]
+cover = ["pytest-cov"]
+doc = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "pygments-github-lexers (==0.0.5)", "pyproject-hooks (!=1.1)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-favicon", "sphinx-inline-tabs", "sphinx-lint", "sphinx-notfound-page (>=1,<2)", "sphinx-reredirects", "sphinxcontrib-towncrier", "towncrier (<24.7)"]
+enabler = ["pytest-enabler (>=2.2)"]
+test = ["build[virtualenv] (>=1.0.3)", "filelock (>=3.4.0)", "ini2toml[lite] (>=0.14)", "jaraco.develop (>=7.21)", "jaraco.envs (>=2.2)", "jaraco.path (>=3.2.0)", "jaraco.test", "packaging (>=23.2)", "pip (>=19.1)", "pyproject-hooks (!=1.1)", "pytest (>=6,!=8.1.*)", "pytest-home (>=0.5)", "pytest-perf", "pytest-subprocess", "pytest-timeout", "pytest-xdist (>=3)", "tomli-w (>=1.0.0)", "virtualenv (>=13.0.0)", "wheel (>=0.44.0)"]
+type = ["importlib-metadata (>=7.0.2)", "jaraco.develop (>=7.21)", "mypy (==1.11.*)", "pytest-mypy"]
 
 [[package]]
 name = "six"
@@ -3589,4 +3594,4 @@ files = [
 [metadata]
 lock-version = "2.0"
 python-versions = ">=3.10,<4.0"
-content-hash = "b4dd361c9385f4b9bc84509d0caf7c52cfe1b84371f487e6d64a14c421f81399"
+content-hash = "43d970ade0bdb4184f833c9684dd5208d133d0c3b022c325baed022a490d0454"
diff --git a/pyproject.toml b/pyproject.toml
index 86ca5aac..39797a54 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -29,7 +29,7 @@ optional = true
 [tool.poetry.group.dev.dependencies]
 black = ">=22.3,<25.0"
 pylint = ">=2.17.4,<4.0.0"
-setuptools = ">=67.8,<71.0"
+setuptools = ">=67.8,<76.0"
 mypy = "^1.3"
 ipykernel = "^6.23.1"
 notebook = ">=6.5.3,<8.0.0"