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gaborcsardi committed Oct 2, 2024
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2 changes: 1 addition & 1 deletion cran.r-project.org/web/checks/check_flavors.html
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<div class="container">
<h2>CRAN Package Check Flavors</h2>
<p>
Last updated on 2024-10-01 04:49:47 CEST.
Last updated on 2024-10-02 04:49:47 CEST.
</p>
<p>
Systems used for CRAN package checking.
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2 changes: 1 addition & 1 deletion cran.r-project.org/web/checks/check_issue_kinds.html
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<div class="container">
<h2>CRAN Package Check Issue Kinds</h2>
<p>
Last updated on 2024-10-01 04:49:47 CEST.
Last updated on 2024-10-02 04:49:47 CEST.
</p>
<table border="1">
<tr> <th> Kind </th> <th> Description </th> <th> Details </th> </tr>
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R-devel
x86_64 Fedora 36 Linux
clang 19.1.0 (C, C++), flang-new 19.1.0 (Fortran)
clang 19.1.1 (C, C++), flang-new 19.1.1 (Fortran)
Timezone Europe/London
Locale en_GB.UTF-8, LC_COLLATE=C

configured with --without-lapack and config.site:
CFLAGS="-O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3"
C17FLAGS="-O3 -Wall -pedantic -Wno-strict-prototypes -Wp,-D_FORTIFY_SOURCE=3"
FFLAGS="-O2 -pedantic"
CXXFLAGS="-O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3"
CPPFLAGS="-isystem /usr/local/clang/include"
LDFLAGS="-L/usr/local/clang/lib64 -L/usr/local/clang18/lib -L/usr/local/lib64"

[-Wno-error=enum-constexpr-conversion was needed in CXXFLAGS to compile mzR]
LDFLAGS="-L/usr/local/clang/lib64 -L/usr/local/clang19/lib -L/usr/local/clang19/lib/x86_64-unknown-linux-gnu -L/usr/local/lib64"

clang was built to use libc++: for a version built to default to libstdc++
(as shipped by Fedora/Debian/Ubuntu), add -stdlib=libc++ to CXX
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-DLLVM_ENABLE_RUNTIMES='libcxx;libcxxabi;libunwind' \
-S ../latest/llvm

For packages that fail to compile with LLVM 19, earlier installations using
18.1.8 are currently being used. These are

RcppAlgos elrm epiworldR googlePolylines healthyaddress hutilscpp
mlpack raybevel rgeoda spNetwork sphereTessellation volesti BioC:gdsfmt

Some external C++ libraries compiled with clang/libc++ are installed under
/usr/local/clang. Currently

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