From 93fc9c2c528f0d65809e5523b24b2dfa766d2be3 Mon Sep 17 00:00:00 2001
From: gaborcsardi <gaborcsardi@users.noreply.github.com>
Date: Wed, 2 Oct 2024 03:37:52 +0000
Subject: [PATCH] Update

---
 cran.r-project.org/web/checks/check_flavors.html    |  2 +-
 .../web/checks/check_issue_kinds.html               |  2 +-
 .../bdr/Rconfig/r-devel-linux-x86_64-fedora-clang   | 13 +++++++++----
 3 files changed, 11 insertions(+), 6 deletions(-)

diff --git a/cran.r-project.org/web/checks/check_flavors.html b/cran.r-project.org/web/checks/check_flavors.html
index b95ae0a..f4dc9a8 100644
--- a/cran.r-project.org/web/checks/check_flavors.html
+++ b/cran.r-project.org/web/checks/check_flavors.html
@@ -10,7 +10,7 @@
 <div class="container">
 <h2>CRAN Package Check Flavors</h2>
 <p>
-Last updated on 2024-10-01 04:49:47 CEST.
+Last updated on 2024-10-02 04:49:47 CEST.
 </p>
 <p>
 Systems used for CRAN package checking.
diff --git a/cran.r-project.org/web/checks/check_issue_kinds.html b/cran.r-project.org/web/checks/check_issue_kinds.html
index 3709cec..66b380c 100644
--- a/cran.r-project.org/web/checks/check_issue_kinds.html
+++ b/cran.r-project.org/web/checks/check_issue_kinds.html
@@ -10,7 +10,7 @@
 <div class="container">
 <h2>CRAN Package Check Issue Kinds</h2>
 <p>
-Last updated on 2024-10-01 04:49:47 CEST.
+Last updated on 2024-10-02 04:49:47 CEST.
 </p>
 <table border="1">
 <tr> <th> Kind </th> <th> Description </th> <th> Details </th> </tr>
diff --git a/www.stats.ox.ac.uk/pub/bdr/Rconfig/r-devel-linux-x86_64-fedora-clang b/www.stats.ox.ac.uk/pub/bdr/Rconfig/r-devel-linux-x86_64-fedora-clang
index a7401ec..d847cf6 100644
--- a/www.stats.ox.ac.uk/pub/bdr/Rconfig/r-devel-linux-x86_64-fedora-clang
+++ b/www.stats.ox.ac.uk/pub/bdr/Rconfig/r-devel-linux-x86_64-fedora-clang
@@ -1,17 +1,16 @@
 R-devel
 x86_64 Fedora 36 Linux
-clang 19.1.0 (C, C++), flang-new 19.1.0 (Fortran)
+clang 19.1.1 (C, C++), flang-new 19.1.1 (Fortran)
 Timezone Europe/London
 Locale en_GB.UTF-8, LC_COLLATE=C
 
 configured with --without-lapack and config.site:
 CFLAGS="-O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3"
+C17FLAGS="-O3 -Wall -pedantic -Wno-strict-prototypes -Wp,-D_FORTIFY_SOURCE=3"
 FFLAGS="-O2 -pedantic"
 CXXFLAGS="-O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3"
 CPPFLAGS="-isystem /usr/local/clang/include"
-LDFLAGS="-L/usr/local/clang/lib64 -L/usr/local/clang18/lib -L/usr/local/lib64"
-
-[-Wno-error=enum-constexpr-conversion was needed in CXXFLAGS to compile mzR]
+LDFLAGS="-L/usr/local/clang/lib64 -L/usr/local/clang19/lib -L/usr/local/clang19/lib/x86_64-unknown-linux-gnu -L/usr/local/lib64"
 
 clang was built to use libc++: for a version built to default to libstdc++
 (as shipped by Fedora/Debian/Ubuntu), add -stdlib=libc++ to CXX 
@@ -37,6 +36,12 @@ cmake -G "Unix Makefiles" \
 -DLLVM_ENABLE_RUNTIMES='libcxx;libcxxabi;libunwind' \
 -S ../latest/llvm
 
+For packages that fail to compile with LLVM 19, earlier installations using
+18.1.8 are currently being used.  These are
+
+  RcppAlgos elrm epiworldR googlePolylines healthyaddress hutilscpp
+  mlpack raybevel rgeoda spNetwork sphereTessellation volesti BioC:gdsfmt
+
 Some external C++ libraries compiled with clang/libc++ are installed under
 /usr/local/clang.  Currently