From 6d3346919493f674e32a212303ca7e9d24e43924 Mon Sep 17 00:00:00 2001 From: Lionel Henry Date: Tue, 13 Feb 2024 14:22:20 +0100 Subject: [PATCH 01/36] Don't evaluate `deferred_run()` example (#1920) --- vignettes/test-fixtures.Rmd | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/vignettes/test-fixtures.Rmd b/vignettes/test-fixtures.Rmd index 37791585e..2a2bd5c19 100644 --- a/vignettes/test-fixtures.Rmd +++ b/vignettes/test-fixtures.Rmd @@ -133,7 +133,7 @@ neat <- function(x, sig_digits) { Second, it works when called in the global environment. Since the global environment isn't perishable, like a test environment is, you have to call `deferred_run()` explicitly to execute the deferred events. You can also clear them, without running, with `deferred_clear()`. -```{r} +```{r, eval = FALSE} withr::defer(print("hi")) #> Setting deferred event(s) on global environment. #> * Execute (and clear) with `deferred_run()`. From 29c73be0df48b24736864194feb2c030d77f59df Mon Sep 17 00:00:00 2001 From: Johannes Gruber Date: Tue, 13 Feb 2024 14:22:41 +0100 Subject: [PATCH 02/36] fix typo (#1918) --- R/reporter.R | 2 +- man/Reporter.Rd | 2 +- vignettes/special-files.Rmd | 2 +- 3 files changed, 3 insertions(+), 3 deletions(-) diff --git a/R/reporter.R b/R/reporter.R index 87c801519..78cfc55f6 100644 --- a/R/reporter.R +++ b/R/reporter.R @@ -1,7 +1,7 @@ #' Manage test reporting #' #' The job of a reporter is to aggregate the results from files, tests, and -#' expectations and display them in an informative way. Every testtthat function +#' expectations and display them in an informative way. Every testthat function #' that runs multiple tests provides a `reporter` argument which you can #' use to override the default (which is selected by [default_reporter()]). #' diff --git a/man/Reporter.Rd b/man/Reporter.Rd index c2e36a6dc..eeb7a0ab2 100644 --- a/man/Reporter.Rd +++ b/man/Reporter.Rd @@ -5,7 +5,7 @@ \title{Manage test reporting} \description{ The job of a reporter is to aggregate the results from files, tests, and -expectations and display them in an informative way. Every testtthat function +expectations and display them in an informative way. Every testthat function that runs multiple tests provides a \code{reporter} argument which you can use to override the default (which is selected by \code{\link[=default_reporter]{default_reporter()}}). } diff --git a/vignettes/special-files.Rmd b/vignettes/special-files.Rmd index 7e18526a2..162f7e926 100644 --- a/vignettes/special-files.Rmd +++ b/vignettes/special-files.Rmd @@ -33,7 +33,7 @@ In principle, you should be able to be run your test files in any order or even ## Helper files -Helper files live in `tests/testtthat/`, start with `helper`, and end with `.r` or `.R`. +Helper files live in `tests/testthat/`, start with `helper`, and end with `.r` or `.R`. They are sourced by `devtools::load_all()` (so they're available interactively when developing your packages) and by `test_check()` and friends (so that they're available no matter how your tests are executed). Helper files are a useful place for functions that you've extracted from repeated code in your tests, whether that be test fixtures (`vignette("test-fixtures")`), custom expectations (`vignette("custom-expectations")`), or skip helpers (`vignette("skipping")`). From f060ccec365e1343ae926c53c215a423b295d7a8 Mon Sep 17 00:00:00 2001 From: Salim B Date: Tue, 13 Feb 2024 14:41:21 +0100 Subject: [PATCH 03/36] Explain abbreviations and add links (#1914) --- R/describe.R | 12 +++++++----- man/describe.Rd | 10 ++++++---- 2 files changed, 13 insertions(+), 9 deletions(-) diff --git a/R/describe.R b/R/describe.R index 0ae6587c3..09a5e5e8d 100644 --- a/R/describe.R +++ b/R/describe.R @@ -1,9 +1,12 @@ #' describe: a BDD testing language #' -#' A simple BDD DSL for writing tests. The language is similar to RSpec for -#' Ruby or Mocha for JavaScript. BDD tests read like sentences and it should -#' thus be easier to understand what the specification of a function/component -#' is. +#' A simple [behavior-driven development +#' (BDD)](https://en.wikipedia.org/wiki/Behavior-driven_development) +#' [domain-specific language](https://en.wikipedia.org/wiki/Domain-specific_language) +#' for writing tests. The language is similar to [RSpec](https://rspec.info/) +#' for Ruby or [Mocha](https://mochajs.org/) for JavaScript. BDD tests read +#' like sentences and it should thus be easier to understand what the +#' specification of a function/component is. #' #' Tests using the `describe` syntax not only verify the tested code, but #' also document its intended behaviour. Each `describe` block specifies a @@ -12,7 +15,6 @@ #' functions as a test and is evaluated in its own environment. You #' can also have nested `describe` blocks. #' -#' #' This test syntax helps to test the intended behaviour of your code. For #' example: you want to write a new function for your package. Try to describe #' the specification first using `describe`, before your write any code. diff --git a/man/describe.Rd b/man/describe.Rd index 746e3bd91..cd9119e57 100644 --- a/man/describe.Rd +++ b/man/describe.Rd @@ -15,10 +15,12 @@ it(description, code = NULL) \item{code}{test code containing the specs} } \description{ -A simple BDD DSL for writing tests. The language is similar to RSpec for -Ruby or Mocha for JavaScript. BDD tests read like sentences and it should -thus be easier to understand what the specification of a function/component -is. +A simple \href{https://en.wikipedia.org/wiki/Behavior-driven_development}{behavior-driven development (BDD)} +\href{https://en.wikipedia.org/wiki/Domain-specific_language}{domain-specific language} +for writing tests. The language is similar to \href{https://rspec.info/}{RSpec} +for Ruby or \href{https://mochajs.org/}{Mocha} for JavaScript. BDD tests read +like sentences and it should thus be easier to understand what the +specification of a function/component is. } \details{ Tests using the \code{describe} syntax not only verify the tested code, but From 93b88dbda3dd048e74dd2bce4623c9436d2013ff Mon Sep 17 00:00:00 2001 From: Kevin Ushey Date: Thu, 15 Aug 2024 15:14:35 -0700 Subject: [PATCH 04/36] use Rf_ prefix --- inst/include/testthat/testthat.h | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/inst/include/testthat/testthat.h b/inst/include/testthat/testthat.h index 30067b529..b1f68961a 100644 --- a/inst/include/testthat/testthat.h +++ b/inst/include/testthat/testthat.h @@ -172,7 +172,7 @@ inline std::ostream& cerr() extern "C" SEXP run_testthat_tests(SEXP use_xml_sxp) { bool use_xml = LOGICAL(use_xml_sxp)[0]; bool success = testthat::run_tests(use_xml); - return ScalarLogical(success); + return Rf_ScalarLogical(success); } # endif // TESTTHAT_TEST_RUNNER @@ -198,7 +198,7 @@ extern "C" SEXP run_testthat_tests(SEXP use_xml_sxp) { # include # include extern "C" SEXP run_testthat_tests() { - return ScalarLogical(true); + return Rf_ScalarLogical(true); } # endif // TESTTHAT_TEST_RUNNER From 46583b67bb3bde9188c7ceb17b04d527362f2e82 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?G=C3=A1bor=20Cs=C3=A1rdi?= Date: Fri, 23 Aug 2024 22:29:22 +0200 Subject: [PATCH 05/36] Fix check on R-devel (#1957) R-devel now uses `-DR_NO_REMAP` when running `R CMD check --as-cran` [1]. This is the same as BDR's fix for testthat 3.2.1.1 [2]. [1] https://developer.r-project.org/blosxom.cgi/R-devel/NEWS/2024/04/14#n2024-04-14 [2] https://github.com/cran/testthat/commit/0c2c0a2c32a8442a4c3a6f0333e22b12678af1a From fe38519d72247a8907228a4ecaf926483aa5d4ff Mon Sep 17 00:00:00 2001 From: olivroy <52606734+olivroy@users.noreply.github.com> Date: Fri, 23 Aug 2024 16:35:37 -0400 Subject: [PATCH 06/36] Fix typo "custom-expectations" -> "custom-expectation" (#1948) --- vignettes/special-files.Rmd | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/vignettes/special-files.Rmd b/vignettes/special-files.Rmd index 162f7e926..d73a5ec12 100644 --- a/vignettes/special-files.Rmd +++ b/vignettes/special-files.Rmd @@ -36,7 +36,7 @@ In principle, you should be able to be run your test files in any order or even Helper files live in `tests/testthat/`, start with `helper`, and end with `.r` or `.R`. They are sourced by `devtools::load_all()` (so they're available interactively when developing your packages) and by `test_check()` and friends (so that they're available no matter how your tests are executed). -Helper files are a useful place for functions that you've extracted from repeated code in your tests, whether that be test fixtures (`vignette("test-fixtures")`), custom expectations (`vignette("custom-expectations")`), or skip helpers (`vignette("skipping")`). +Helper files are a useful place for functions that you've extracted from repeated code in your tests, whether that be test fixtures (`vignette("test-fixtures")`), custom expectations (`vignette("custom-expectation")`), or skip helpers (`vignette("skipping")`). ## Setup files From 46504adc389a1559e5bfdd55d0a86adb44f429ec Mon Sep 17 00:00:00 2001 From: olivroy <52606734+olivroy@users.noreply.github.com> Date: Tue, 22 Oct 2024 18:12:15 -0400 Subject: [PATCH 07/36] Fix stack trace in stop_reporter (#1985) --- R/reporter-zzz.R | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/R/reporter-zzz.R b/R/reporter-zzz.R index 9d3da7418..e4adce07a 100644 --- a/R/reporter-zzz.R +++ b/R/reporter-zzz.R @@ -61,7 +61,7 @@ stop_reporter <- function(message) { cli::cli_abort( message, class = "testthat_abort_reporter", - error_call = NULL + call = NULL ) } From 35b81f1d24f0d67e55576587ddce3b043d678f4e Mon Sep 17 00:00:00 2001 From: Hadley Wickham Date: Tue, 22 Oct 2024 17:40:18 -0500 Subject: [PATCH 08/36] Upkeep 2024-08 (#1984) * Re-run tests on R 4.4 * `use_tidy_github_actions()` * Install XQuartz for `png()` * Freshen up crashing test and only run on 4.4 and later * Update snapshots/bump evaluate --- .github/workflows/R-CMD-check.yaml | 25 ++++++++++--------- .github/workflows/pkgdown.yaml | 10 +++++--- .github/workflows/pr-commands.yaml | 12 ++++++--- .github/workflows/test-coverage.yaml | 25 +++++++++++++------ DESCRIPTION | 8 +++--- README.Rmd | 8 +++--- README.md | 2 +- .../_snaps/R4.4/snapshot-file/version.txt | 1 + tests/testthat/_snaps/R4.4/snapshot.md | 7 ++++++ tests/testthat/test-parallel-crash.R | 17 +++++-------- .../crash/tests/testthat/test-crash-3.R | 2 +- .../testthat/test-verify-conditions-lines.txt | 4 +-- tests/testthat/test-verify-conditions.txt | 4 +-- 13 files changed, 75 insertions(+), 50 deletions(-) create mode 100644 tests/testthat/_snaps/R4.4/snapshot-file/version.txt create mode 100644 tests/testthat/_snaps/R4.4/snapshot.md diff --git a/.github/workflows/R-CMD-check.yaml b/.github/workflows/R-CMD-check.yaml index b87b56bc2..c580e0c7a 100644 --- a/.github/workflows/R-CMD-check.yaml +++ b/.github/workflows/R-CMD-check.yaml @@ -10,7 +10,9 @@ on: pull_request: branches: [main, master] -name: R-CMD-check +name: R-CMD-check.yaml + +permissions: read-all jobs: R-CMD-check: @@ -25,24 +27,22 @@ jobs: - {os: macos-latest, r: 'release'} - {os: windows-latest, r: 'release'} - # Use 3.6 to trigger usage of RTools35 - - {os: windows-latest, r: '3.6'} - # use 4.1 to check with rtools40's older compiler - - {os: windows-latest, r: '4.1'} + # use 4.0 or 4.1 to check with rtools40's older compiler + - {os: windows-latest, r: 'oldrel-4'} - - {os: ubuntu-latest, r: 'devel', http-user-agent: 'release'} - - {os: ubuntu-latest, r: 'release'} - - {os: ubuntu-latest, r: 'oldrel-1'} - - {os: ubuntu-latest, r: 'oldrel-2'} - - {os: ubuntu-latest, r: 'oldrel-3'} - - {os: ubuntu-latest, r: 'oldrel-4'} + - {os: ubuntu-latest, r: 'devel', http-user-agent: 'release'} + - {os: ubuntu-latest, r: 'release'} + - {os: ubuntu-latest, r: 'oldrel-1'} + - {os: ubuntu-latest, r: 'oldrel-2'} + - {os: ubuntu-latest, r: 'oldrel-3'} + - {os: ubuntu-latest, r: 'oldrel-4'} env: GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} R_KEEP_PKG_SOURCE: yes steps: - - uses: actions/checkout@v3 + - uses: actions/checkout@v4 - uses: r-lib/actions/setup-pandoc@v2 @@ -65,3 +65,4 @@ jobs: - uses: r-lib/actions/check-r-package@v2 with: upload-snapshots: true + build_args: 'c("--no-manual","--compact-vignettes=gs+qpdf")' diff --git a/.github/workflows/pkgdown.yaml b/.github/workflows/pkgdown.yaml index 087f0b05f..4bbce7508 100644 --- a/.github/workflows/pkgdown.yaml +++ b/.github/workflows/pkgdown.yaml @@ -9,7 +9,9 @@ on: types: [published] workflow_dispatch: -name: pkgdown +name: pkgdown.yaml + +permissions: read-all jobs: pkgdown: @@ -19,8 +21,10 @@ jobs: group: pkgdown-${{ github.event_name != 'pull_request' || github.run_id }} env: GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} + permissions: + contents: write steps: - - uses: actions/checkout@v3 + - uses: actions/checkout@v4 - uses: r-lib/actions/setup-pandoc@v2 @@ -39,7 +43,7 @@ jobs: - name: Deploy to GitHub pages 🚀 if: github.event_name != 'pull_request' - uses: JamesIves/github-pages-deploy-action@v4.4.1 + uses: JamesIves/github-pages-deploy-action@v4.5.0 with: clean: false branch: gh-pages diff --git a/.github/workflows/pr-commands.yaml b/.github/workflows/pr-commands.yaml index 71f335b3e..2edd93f27 100644 --- a/.github/workflows/pr-commands.yaml +++ b/.github/workflows/pr-commands.yaml @@ -4,7 +4,9 @@ on: issue_comment: types: [created] -name: Commands +name: pr-commands.yaml + +permissions: read-all jobs: document: @@ -13,8 +15,10 @@ jobs: runs-on: ubuntu-latest env: GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} + permissions: + contents: write steps: - - uses: actions/checkout@v3 + - uses: actions/checkout@v4 - uses: r-lib/actions/pr-fetch@v2 with: @@ -50,8 +54,10 @@ jobs: runs-on: ubuntu-latest env: GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} + permissions: + contents: write steps: - - uses: actions/checkout@v3 + - uses: actions/checkout@v4 - uses: r-lib/actions/pr-fetch@v2 with: diff --git a/.github/workflows/test-coverage.yaml b/.github/workflows/test-coverage.yaml index 2c5bb5029..988226098 100644 --- a/.github/workflows/test-coverage.yaml +++ b/.github/workflows/test-coverage.yaml @@ -6,7 +6,9 @@ on: pull_request: branches: [main, master] -name: test-coverage +name: test-coverage.yaml + +permissions: read-all jobs: test-coverage: @@ -15,7 +17,7 @@ jobs: GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} steps: - - uses: actions/checkout@v3 + - uses: actions/checkout@v4 - uses: r-lib/actions/setup-r@v2 with: @@ -23,28 +25,37 @@ jobs: - uses: r-lib/actions/setup-r-dependencies@v2 with: - extra-packages: any::covr + extra-packages: any::covr, any::xml2 needs: coverage - name: Test coverage run: | - covr::codecov( + cov <- covr::package_coverage( quiet = FALSE, clean = FALSE, - install_path = file.path(Sys.getenv("RUNNER_TEMP"), "package") + install_path = file.path(normalizePath(Sys.getenv("RUNNER_TEMP"), winslash = "/"), "package") ) + covr::to_cobertura(cov) shell: Rscript {0} + - uses: codecov/codecov-action@v4 + with: + fail_ci_if_error: ${{ github.event_name != 'pull_request' && true || false }} + file: ./cobertura.xml + plugin: noop + disable_search: true + token: ${{ secrets.CODECOV_TOKEN }} + - name: Show testthat output if: always() run: | ## -------------------------------------------------------------------- - find ${{ runner.temp }}/package -name 'testthat.Rout*' -exec cat '{}' \; || true + find '${{ runner.temp }}/package' -name 'testthat.Rout*' -exec cat '{}' \; || true shell: bash - name: Upload test results if: failure() - uses: actions/upload-artifact@v3 + uses: actions/upload-artifact@v4 with: name: coverage-test-failures path: ${{ runner.temp }}/package diff --git a/DESCRIPTION b/DESCRIPTION index 0d38b02d9..e8e7b9307 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -14,7 +14,7 @@ Description: Software testing is important, but, in part because it is License: MIT + file LICENSE URL: https://testthat.r-lib.org, https://github.com/r-lib/testthat BugReports: https://github.com/r-lib/testthat/issues -Depends: +Depends: R (>= 3.6.0) Imports: brio (>= 1.1.3), @@ -22,7 +22,7 @@ Imports: cli (>= 3.6.1), desc (>= 1.4.2), digest (>= 0.6.33), - evaluate (>= 0.21), + evaluate (>= 1.0.1), jsonlite (>= 1.8.7), lifecycle (>= 1.0.3), magrittr (>= 2.0.3), @@ -36,7 +36,7 @@ Imports: utils, waldo (>= 0.5.1), withr (>= 2.5.0) -Suggests: +Suggests: covr, curl (>= 0.9.5), diffviewer (>= 0.1.0), @@ -47,7 +47,7 @@ Suggests: usethis, vctrs (>= 0.1.0), xml2 -VignetteBuilder: +VignetteBuilder: knitr Config/Needs/website: tidyverse/tidytemplate Config/testthat/edition: 3 diff --git a/README.Rmd b/README.Rmd index 5ea73b1a0..7e8f1ad3a 100644 --- a/README.Rmd +++ b/README.Rmd @@ -17,7 +17,7 @@ knitr::opts_chunk$set( [![CRAN status](https://www.r-pkg.org/badges/version/testthat)](https://cran.r-project.org/package=testthat) [![R-CMD-check](https://github.com/r-lib/testthat/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/r-lib/testthat/actions/workflows/R-CMD-check.yaml) -[![Codecov test coverage](https://codecov.io/gh/r-lib/testthat/branch/main/graph/badge.svg)](https://app.codecov.io/gh/r-lib/testthat?branch=main) +[![Codecov test coverage](https://codecov.io/gh/r-lib/testthat/graph/badge.svg)](https://app.codecov.io/gh/r-lib/testthat) ## Overview @@ -31,12 +31,12 @@ Testing your code can be painful and tedious, but it greatly increases the quali on the command line, building test suites, or using R CMD check. * Displays test progress visually, showing a pass, fail, or error for every - expectation. If you're using the terminal or a recent version of RStudio, + expectation. If you're using the terminal or a recent version of RStudio, it'll even colour the output. -testthat draws inspiration from the xUnit family of testing packages, as well as from many of the innovative ruby testing libraries, like [rspec](https://rspec.info/), [testy](https://github.com/ahoward/testy), [bacon](https://github.com/leahneukirchen/bacon) and [cucumber](https://cucumber.io). +testthat draws inspiration from the xUnit family of testing packages, as well as from many of the innovative ruby testing libraries, like [rspec](https://rspec.info/), [testy](https://github.com/ahoward/testy), [bacon](https://github.com/leahneukirchen/bacon) and [cucumber](https://cucumber.io). -testthat is the most popular unit testing package for R and is used by thousands of CRAN packages. +testthat is the most popular unit testing package for R and is used by thousands of CRAN packages. If you're not familiar with testthat, the [testing chapter](https://r-pkgs.org/testing-basics.html) in [R packages](https://r-pkgs.org) gives a good overview, along with workflow advice and concrete examples. diff --git a/README.md b/README.md index 902cfb811..e451fe99e 100644 --- a/README.md +++ b/README.md @@ -9,7 +9,7 @@ status](https://www.r-pkg.org/badges/version/testthat)](https://cran.r-project.org/package=testthat) [![R-CMD-check](https://github.com/r-lib/testthat/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/r-lib/testthat/actions/workflows/R-CMD-check.yaml) [![Codecov test -coverage](https://codecov.io/gh/r-lib/testthat/branch/main/graph/badge.svg)](https://app.codecov.io/gh/r-lib/testthat?branch=main) +coverage](https://codecov.io/gh/r-lib/testthat/graph/badge.svg)](https://app.codecov.io/gh/r-lib/testthat) ## Overview diff --git a/tests/testthat/_snaps/R4.4/snapshot-file/version.txt b/tests/testthat/_snaps/R4.4/snapshot-file/version.txt new file mode 100644 index 000000000..f00f1da0d --- /dev/null +++ b/tests/testthat/_snaps/R4.4/snapshot-file/version.txt @@ -0,0 +1 @@ +R4.4 diff --git a/tests/testthat/_snaps/R4.4/snapshot.md b/tests/testthat/_snaps/R4.4/snapshot.md new file mode 100644 index 000000000..d9fc8be05 --- /dev/null +++ b/tests/testthat/_snaps/R4.4/snapshot.md @@ -0,0 +1,7 @@ +# variants save different values + + Code + r_version() + Output + [1] "R4.4" + diff --git a/tests/testthat/test-parallel-crash.R b/tests/testthat/test-parallel-crash.R index cb3b0d7e7..d6a1f0268 100644 --- a/tests/testthat/test-parallel-crash.R +++ b/tests/testthat/test-parallel-crash.R @@ -1,22 +1,17 @@ test_that("crash", { - # https://github.com/r-lib/rlang/commit/c84d52b6 - skip_if_not_installed("rlang", "1.0.1.9000") - skip_on_cran() skip_on_covr() + skip_if_not(getRversion() >= "4.4.0") + withr::local_envvar(TESTTHAT_PARALLEL = "TRUE") - do <- function() { - err <- NULL + pkg <- test_path("test-parallel", "crash") + err <- callr::r(function() { tryCatch( testthat::test_local(".", reporter = "summary", stop_on_failure = FALSE), - error = function(e) err <<- e + error = function(e) e ) - err - } - - pkg <- test_path("test-parallel", "crash") - err <- callr::r(do, wd = pkg) + }, wd = pkg) expect_s3_class(err, "testthat_process_error") expect_equal(err$test_file, "test-crash-3.R") }) diff --git a/tests/testthat/test-parallel/crash/tests/testthat/test-crash-3.R b/tests/testthat/test-parallel/crash/tests/testthat/test-crash-3.R index 76ee60409..94d7b54a5 100644 --- a/tests/testthat/test-parallel/crash/tests/testthat/test-crash-3.R +++ b/tests/testthat/test-parallel/crash/tests/testthat/test-crash-3.R @@ -1,5 +1,5 @@ test_that("this crashes", { expect_true(TRUE) expect_true(FALSE) - asNamespace("callr")$crash() + rlang::node_car(0) }) diff --git a/tests/testthat/test-verify-conditions-lines.txt b/tests/testthat/test-verify-conditions-lines.txt index 8e10f218e..fa8a1881d 100644 --- a/tests/testthat/test-verify-conditions-lines.txt +++ b/tests/testthat/test-verify-conditions-lines.txt @@ -3,10 +3,10 @@ Message: First. Second. > warning("First.\nSecond.") -Warning in eval(expr, envir, enclos): First. +Warning: First. Second. > stop("First.\nSecond.") -Error in eval(expr, envir, enclos): First. +Error: First. Second. diff --git a/tests/testthat/test-verify-conditions.txt b/tests/testthat/test-verify-conditions.txt index 0d659b6c0..63fdf0eb4 100644 --- a/tests/testthat/test-verify-conditions.txt +++ b/tests/testthat/test-verify-conditions.txt @@ -3,10 +3,10 @@ Message: Message > # With calls > warning("Warning") -Warning in eval(expr, envir, enclos): Warning +Warning: Warning > stop("Error") -Error in eval(expr, envir, enclos): Error +Error: Error > # Without calls > warning("Warning", call. = FALSE) From 75c70e0245b405980ead1ff29646ece30f4600ab Mon Sep 17 00:00:00 2001 From: Hadley Wickham Date: Wed, 23 Oct 2024 08:15:15 -0500 Subject: [PATCH 09/36] Rely on `load_all()` to load helpers (#1983) Otherwise effectively unload them for the developer. Fixes #1982 --- R/test-files.R | 11 ++++++++++- 1 file changed, 10 insertions(+), 1 deletion(-) diff --git a/R/test-files.R b/R/test-files.R index 362ccd85c..397fb2dc6 100644 --- a/R/test-files.R +++ b/R/test-files.R @@ -197,6 +197,15 @@ test_files_serial <- function(test_dir, load_package = c("none", "installed", "source"), error_call = caller_env()) { + # Because load_all() called by test_files_setup_env() will have already + # loaded them. We don't want to rely on testthat's loading since that + # only affects the test environment and we want to keep the helpers + # loaded in the user's session. + load_package <- arg_match(load_package) + if (load_package == "source") { + load_helpers <- FALSE + } + env <- test_files_setup_env(test_package, test_dir, load_package, env) # record testing env for mocks local_testing_env(env) @@ -244,7 +253,7 @@ test_files_setup_env <- function(test_package, } find_load_all_args <- function(path) { - default <- list(export_all = TRUE, helpers = FALSE) + default <- list(export_all = TRUE, helpers = TRUE) desc <- find_description(path) if (is.null(desc)) { From 41442ac3e18fda164026a71a73e651ad36e179a4 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Kirill=20M=C3=BCller?= Date: Mon, 28 Oct 2024 15:55:51 +0100 Subject: [PATCH 10/36] Align with `withr::local_language()` from dev withr (#1879) Co-authored-by: Lionel Henry --- DESCRIPTION | 4 ++-- NEWS.md | 4 ++++ R/local.R | 7 ++----- man/local_test_context.Rd | 2 +- tests/testthat/test-local.R | 2 +- 5 files changed, 10 insertions(+), 9 deletions(-) diff --git a/DESCRIPTION b/DESCRIPTION index e8e7b9307..6ecca9c0f 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -35,7 +35,7 @@ Imports: rlang (>= 1.1.1), utils, waldo (>= 0.5.1), - withr (>= 2.5.0) + withr (>= 3.0.2) Suggests: covr, curl (>= 0.9.5), @@ -55,4 +55,4 @@ Config/testthat/parallel: true Config/testthat/start-first: watcher, parallel* Encoding: UTF-8 Roxygen: list(markdown = TRUE, r6 = FALSE) -RoxygenNote: 7.2.3 +RoxygenNote: 7.3.2 diff --git a/NEWS.md b/NEWS.md index 6eb90a984..164a3df9c 100644 --- a/NEWS.md +++ b/NEWS.md @@ -1,5 +1,9 @@ # testthat (development version) +* `LANGUAGE` is now set to `"C"` in reprocucible environments (i.e. + `test_that()` blocks) to disable translations. This fixes warnings + about being unable to set the language to `"en"` (#1925). + # testthat 3.2.1 * Fix incorrect format string detected by latest R-devel. Fix thanks to diff --git a/R/local.R b/R/local.R index c327503ed..b8693bab0 100644 --- a/R/local.R +++ b/R/local.R @@ -98,7 +98,7 @@ local_reproducible_output <- function(width = 80, unicode = FALSE, rstudio = FALSE, hyperlinks = FALSE, - lang = "en", + lang = "C", .env = parent.frame()) { if (unicode) { @@ -133,10 +133,7 @@ local_reproducible_output <- function(width = 80, .local_envir = .env ) - if (isTRUE(capabilities("NLS")) && Sys.getenv("LANG") != "C") { - withr::local_language(lang, .local_envir = .env) - } - + withr::local_language(lang, .local_envir = .env) withr::local_collate("C", .local_envir = .env) } diff --git a/man/local_test_context.Rd b/man/local_test_context.Rd index af9ae02a5..91f53ff4e 100644 --- a/man/local_test_context.Rd +++ b/man/local_test_context.Rd @@ -13,7 +13,7 @@ local_reproducible_output( unicode = FALSE, rstudio = FALSE, hyperlinks = FALSE, - lang = "en", + lang = "C", .env = parent.frame() ) } diff --git a/tests/testthat/test-local.R b/tests/testthat/test-local.R index 0440340c5..8c0b4a3a4 100644 --- a/tests/testthat/test-local.R +++ b/tests/testthat/test-local.R @@ -21,7 +21,7 @@ test_that("local context is 'as promised' inside test_that()", { expect_equal(getOption("max.print"), 99999) expect_equal(Sys.getenv("RSTUDIO"), "") - expect_equal(Sys.getenv("LANGUAGE"), "en") + expect_equal(Sys.getenv("LANGUAGE"), "C") expect_equal(Sys.getlocale("LC_COLLATE"), "C") }) From 9a9be425c3c5c98a07a720c1c053a0289cb69060 Mon Sep 17 00:00:00 2001 From: Hadley Wickham Date: Tue, 29 Oct 2024 15:49:05 -0500 Subject: [PATCH 11/36] Include more docs in index (#2002) Fixes #1941. Fixes #1922. --- R/edition.R | 1 - R/expect-constant.R | 2 -- R/expect-self-test.R | 2 -- R/expectation.R | 1 - R/expectations-matches.R | 1 - R/test-files.R | 1 - _pkgdown.yml | 5 +++++ man/expect_match.Rd | 1 - man/expect_null.Rd | 1 - man/expect_success.Rd | 1 - man/expectation.Rd | 1 - man/local_edition.Rd | 1 - man/test_dir.Rd | 1 - 13 files changed, 5 insertions(+), 14 deletions(-) diff --git a/R/edition.R b/R/edition.R index 438e1e2fc..333f53322 100644 --- a/R/edition.R +++ b/R/edition.R @@ -60,7 +60,6 @@ edition_name <- function(x) { #' @export #' @param x Edition Should be a single integer. #' @param .env Environment that controls scope of changes. For expert use only. -#' @keywords internal local_edition <- function(x, .env = parent.frame()) { stopifnot(is_zap(x) || (is.numeric(x) && length(x) == 1)) diff --git a/R/expect-constant.R b/R/expect-constant.R index c297e2846..72e267e96 100644 --- a/R/expect-constant.R +++ b/R/expect-constant.R @@ -50,7 +50,6 @@ expect_false <- function(object, info = NULL, label = NULL) { #' check for it either with `expect_equal(x, NULL)` or `expect_type(x, "NULL")`. #' #' @inheritParams expect_that -#' @keywords internal #' @export #' @family expectations #' @examples @@ -83,4 +82,3 @@ expect_waldo_constant <- function(act, constant, info) { invisible(act$val) } - diff --git a/R/expect-self-test.R b/R/expect-self-test.R index 4768ca00c..112018800 100644 --- a/R/expect-self-test.R +++ b/R/expect-self-test.R @@ -7,7 +7,6 @@ #' @param expr Expression that evaluates a single expectation. #' @param message Check that the failure message matches this regexp. #' @param ... Other arguments passed on to [expect_match()]. -#' @keywords internal #' @export expect_success <- function(expr) { exp <- capture_expectation(expr) @@ -114,4 +113,3 @@ local_output_override <- function(width = 80, crayon = TRUE, unicode = TRUE, reporter$unicode <- old_unicode }, .env) } - diff --git a/R/expectation.R b/R/expectation.R index c02e55134..57febc222 100644 --- a/R/expectation.R +++ b/R/expectation.R @@ -89,7 +89,6 @@ expect <- function(ok, failure_message, #' @param message Message describing test failure #' @param srcref Optional `srcref` giving location of test. #' @inheritParams expect -#' @keywords internal #' @export expectation <- function(type, message, srcref = NULL, trace = NULL) { new_expectation(type, message, srcref = srcref, trace = trace) diff --git a/R/expectations-matches.R b/R/expectations-matches.R index 0d4d1c4a9..0f4e679be 100644 --- a/R/expectations-matches.R +++ b/R/expectations-matches.R @@ -15,7 +15,6 @@ #' (not a regular expressions). Overrides `perl`. #' @inheritDotParams base::grepl -pattern -x -perl -fixed #' @family expectations -#' @keywords internal #' @export #' @examples #' expect_match("Testing is fun", "fun") diff --git a/R/test-files.R b/R/test-files.R index 397fb2dc6..db231a2d7 100644 --- a/R/test-files.R +++ b/R/test-files.R @@ -37,7 +37,6 @@ #' Config/testthat/load-all: list(export_all = FALSE, helpers = FALSE) #' ``` #' @param wrap DEPRECATED -#' @keywords internal #' @return A list (invisibly) containing data about the test results. #' @inheritParams with_reporter #' @inheritParams source_file diff --git a/_pkgdown.yml b/_pkgdown.yml index 209eea3d6..581dd8fbe 100644 --- a/_pkgdown.yml +++ b/_pkgdown.yml @@ -20,12 +20,14 @@ reference: - subtitle: Objects contents: - expect_equal + - expect_null - expect_type - subtitle: Vectors contents: - expect_length - expect_gt + - expect_match - expect_named - expect_setequal - expect_true @@ -49,6 +51,7 @@ reference: - title: Test helpers contents: + - local_edition - is_testing - skip - teardown_env @@ -73,7 +76,9 @@ reference: - title: Expectation internals contents: - expect + - expectation - fail + - expect_success news: releases: diff --git a/man/expect_match.Rd b/man/expect_match.Rd index 1272f53e3..4142ce8e8 100644 --- a/man/expect_match.Rd +++ b/man/expect_match.Rd @@ -101,4 +101,3 @@ Other expectations: \code{\link{logical-expectations}} } \concept{expectations} -\keyword{internal} diff --git a/man/expect_null.Rd b/man/expect_null.Rd index 45b1adb12..e3b953cce 100644 --- a/man/expect_null.Rd +++ b/man/expect_null.Rd @@ -44,4 +44,3 @@ Other expectations: \code{\link{logical-expectations}} } \concept{expectations} -\keyword{internal} diff --git a/man/expect_success.Rd b/man/expect_success.Rd index 294a2d6dc..e4d6304fa 100644 --- a/man/expect_success.Rd +++ b/man/expect_success.Rd @@ -24,4 +24,3 @@ Use these expectations to test other expectations. Use \code{show_failure()} in examples to print the failure message without throwing an error. } -\keyword{internal} diff --git a/man/expectation.Rd b/man/expectation.Rd index 013a15676..6788fb3cc 100644 --- a/man/expectation.Rd +++ b/man/expectation.Rd @@ -51,4 +51,3 @@ details. Create an expectation with \code{expectation()} or \code{new_expectation()} and signal it with \code{exp_signal()}. } -\keyword{internal} diff --git a/man/local_edition.Rd b/man/local_edition.Rd index f93c8456f..8c317a9b2 100644 --- a/man/local_edition.Rd +++ b/man/local_edition.Rd @@ -19,4 +19,3 @@ edition_get() a single test file) change the active edition of testthat. \code{edition_get()} allows you to retrieve the currently active edition. } -\keyword{internal} diff --git a/man/test_dir.Rd b/man/test_dir.Rd index 75a65eed1..27fdc5a3f 100644 --- a/man/test_dir.Rd +++ b/man/test_dir.Rd @@ -78,4 +78,3 @@ namespace environment, so that tests can access internal functions and objects. } -\keyword{internal} From ef5e2933743af97f68eda695a66241678ce3696c Mon Sep 17 00:00:00 2001 From: Hadley Wickham Date: Tue, 29 Oct 2024 16:09:21 -0500 Subject: [PATCH 12/36] Strip trailing WS --- NEWS.md | 464 ++++++++++++++++++++++++++++---------------------------- 1 file changed, 232 insertions(+), 232 deletions(-) diff --git a/NEWS.md b/NEWS.md index 164a3df9c..04d46636e 100644 --- a/NEWS.md +++ b/NEWS.md @@ -6,20 +6,20 @@ # testthat 3.2.1 -* Fix incorrect format string detected by latest R-devel. Fix thanks to +* Fix incorrect format string detected by latest R-devel. Fix thanks to Tomas Kalibera. -* `expect_snapshot()` handles unexpected errors like errors outside of +* `expect_snapshot()` handles unexpected errors like errors outside of snapshots, i.e. they terminate the entire test and get a traceback (#1906). -* `JunitReporter()` now uses ensures numeric values are saved the xml file +* `JunitReporter()` now uses ensures numeric values are saved the xml file with `.` as decimal separator. (@maksymiuks, #1660) -* `local_mocked_bindings()` can now mock any object, not just functions +* `local_mocked_bindings()` can now mock any object, not just functions (#1896). -* `skip_if_offline()` now uses `captive.apple.com` by default. This is the - hostname that Apple devices use to check that they're online so it should +* `skip_if_offline()` now uses `captive.apple.com` by default. This is the + hostname that Apple devices use to check that they're online so it should have a higher reliability than `r-project.org` (@jdblischak, #1890). * `test_file(desc = )` will now find `describe()` tests as well as `test_that()` @@ -32,8 +32,8 @@ * `is_informative_error()` and the `wrap` argument to `test_dir()` and friends are now defunct. -* `expect_no_error()`, `expect_no_warning()`, `expect_no_message()`, - `expect_no_condition()`, `local_mocked_bindings()`, and +* `expect_no_error()`, `expect_no_warning()`, `expect_no_message()`, + `expect_no_condition()`, `local_mocked_bindings()`, and `with_mocked_bindings()` are now stable, not experimental. ## New features @@ -60,7 +60,7 @@ * `expect_snapshot()` and friends no longer create a temporary file on every invocation. -* `expect_snapshot_file()` now generates clickable links to review changes +* `expect_snapshot_file()` now generates clickable links to review changes (#1821). * `expect_snapshot_value()` has an improved error if the object can't be @@ -74,10 +74,10 @@ * `StopReporter` gains the ability to suppress praise when a test passes. * `ProgressReporter` now uses is a two characters wide skip column in order - to have a consistent width when 10 or more tests are skipped in a single file + to have a consistent width when 10 or more tests are skipped in a single file (@mgirlich, #1844). -* `test_file()` gains a `desc` argument which allows you to run a single +* `test_file()` gains a `desc` argument which allows you to run a single test from a file (#1776). # testthat 3.1.10 @@ -91,27 +91,27 @@ # testthat 3.1.9 -* New `expect_contains()` and `expect_in()` that works similarly to - `expect_true(all(expected %in% object))` or +* New `expect_contains()` and `expect_in()` that works similarly to + `expect_true(all(expected %in% object))` or `expect_true(all(object %in% expected))` but give more informative failure messages (#1346). * New `is_snapshot()` returns `TRUE` if code is running inside a snapshot test - (#1796) and `is_checking()` returns `TRUE` if test is running inside of + (#1796) and `is_checking()` returns `TRUE` if test is running inside of `R CMD check` (#1795) -* `ProgressReporter` only reports the run time of test files that take longer +* `ProgressReporter` only reports the run time of test files that take longer than 1s, rather than 0.1s. (#1806) and re-displays all failures at the end - of the results. Skips are now only shown at the end of reporter summaries, - not as tests are run. This makes them less intrusive in interactive tests + of the results. Skips are now only shown at the end of reporter summaries, + not as tests are run. This makes them less intrusive in interactive tests while still allowing you to verify that the correct tests are skipped (#1801). - When using parallel tests, links to failed tests (#1787) and links to + When using parallel tests, links to failed tests (#1787) and links to accept/review snapshot (#1802) now work. * `set_state_inspector()` allows to to register a function that's called before and after every test, reporting on any differences. This - is very useful for detecting if any of your tests have made changes to - global state (like options, env vars, or connections) (#1674). This + is very useful for detecting if any of your tests have made changes to + global state (like options, env vars, or connections) (#1674). This function was inspired by renv's testing infrastructure. * `skip_on_cran()` no longer skips (errors) when run interactively. @@ -126,7 +126,7 @@ * `expect_snapshot()` differences no longer use quotes. * `expect_error()`, `expect_warning()`, and `expect_message()` now correctly - enforce that the condition is of the expected base class (e.g. error, + enforce that the condition is of the expected base class (e.g. error, warning, message) even when the `class` argument is used (#1168). * `it()` now calls `local_test_context()` so that it behaves more @@ -136,8 +136,8 @@ * `skip_on_bioc()` now uses the documented environment variable (`IS_BIOC_BUILD_MACHINE`) (#1712). -* `source_file()`, which is used by various parts of the helper and - setup/teardown machinery, now reports the file name in the case of +* `source_file()`, which is used by various parts of the helper and + setup/teardown machinery, now reports the file name in the case of errors (#1704). * `test_path()` now works when called within helper files (#1562). @@ -146,9 +146,9 @@ that testthat uses (#1638). * `with_mocked_bindings()` and `local_mocked_bindings()` now also bind in the - imports namespace and can mock S3 methods. These changes make them good - substitutes for the deprecated functions `with_mock()` and `local_mock()`, so - those older functions now recommend switching to the newer equivalents + imports namespace and can mock S3 methods. These changes make them good + substitutes for the deprecated functions `with_mock()` and `local_mock()`, so + those older functions now recommend switching to the newer equivalents instead of using the mockr or mockery packages. # testthat 3.1.7 @@ -157,7 +157,7 @@ * `expect_snapshot()` no longer elides new lines when run interactively (#1726). -* Experimental new `with_mocked_bindings()` and `local_mocked_bindings()` +* Experimental new `with_mocked_bindings()` and `local_mocked_bindings()` (#1739). # testthat 3.1.6 @@ -167,12 +167,12 @@ # testthat 3.1.5 * Deprecation warnings are no longer captured by `expect_warning(code, NA)`, - `expect_no_warning(code)`, or `expect_silent(code)`. This ensures that they - bubble up to the top level so that you can address them (#1680). If you want + `expect_no_warning(code)`, or `expect_silent(code)`. This ensures that they + bubble up to the top level so that you can address them (#1680). If you want to assert that code does not throw a deprecation warning, use `expect_no_condition(code(), class = "lifecycle_warning_deprecation")`. -* New experimental `expect_no_error()`, `expect_no_warning()`, +* New experimental `expect_no_error()`, `expect_no_warning()`, `expect_no_message()`, and `expect_no_condition()` for asserting the code runs without an error, warning, message, or condition (#1679). @@ -185,7 +185,7 @@ (@kevinushey, #1687) * Improve way `capture_output()` handles encoding thanks to suggestion from - Kurt Hornik (#1693). This means that snapshots using UTF-8 encoded text on + Kurt Hornik (#1693). This means that snapshots using UTF-8 encoded text on windows work once again. * `local_reproducible_output()` will no longer attempt to set the local language @@ -239,7 +239,7 @@ context of an error as part of messages, see the release notes of rlang 1.0.0 for more about this. -* Test results show hyperlinks to failed expectation when supported (#1544). +* Test results show hyperlinks to failed expectation when supported (#1544). # testthat 3.1.2 @@ -251,28 +251,28 @@ of errors and messages (#1509). * If `expect_snapshot()` generates a snapshot with different value but - still compares as equal (e.g. because you've set a numeric tolerance), the + still compares as equal (e.g. because you've set a numeric tolerance), the saved values no longer update if another snapshot in the same file changes. -* `expect_snapshot()` now only adds a `.new` file for the variants that +* `expect_snapshot()` now only adds a `.new` file for the variants that actually changed, not all variants, while `expect_snapshot_file()` with variant with no longer immediately deletes `.new` files (#1468). -* `expect_snapshot_file()` gains a `transform` argument to match - `expect_snapshot()` (#1474). `compare` now defaults to `NULL`, automatically +* `expect_snapshot_file()` gains a `transform` argument to match + `expect_snapshot()` (#1474). `compare` now defaults to `NULL`, automatically guessing the comparison type based on the extension. -* `expect_snapshot_file()` now errors if the file being snapshot does not exist; - `SnapshotReporter` also now treats the file directory as an absolute path +* `expect_snapshot_file()` now errors if the file being snapshot does not exist; + `SnapshotReporter` also now treats the file directory as an absolute path (#1476, @malcolmbarrett) * New `expect_snapshot_warning()` to match `expect_snapshot_error()` (#1532). * `JUnitReporter` now includes skip messages/reasons (@rfineman, #1507) -* `local_reproducible_output()` gains a `lang` argument so that you can +* `local_reproducible_output()` gains a `lang` argument so that you can optionally override the language used to translate error messages (#1483). - It also sets the global option `cli.num_colors` in addition to + It also sets the global option `cli.num_colors` in addition to `crayon.enabled`. * `test_that()` no longer inappropriately skips when calling `expect_equal()` @@ -282,13 +282,13 @@ * `snapshot_accept()` and `snapshot_review()` now work with exactly the same file specification which can be a snapshot name, a file name, or a directory - (#1546). They both work better with variants (#1508). Snapshot cleanup also + (#1546). They both work better with variants (#1508). Snapshot cleanup also removes all empty directories (#1457). -* When a snapshot changes the hint also mentions that you can use - `snapshot_review()` (#1500, @DanChaltiel) and the message tells you what +* When a snapshot changes the hint also mentions that you can use + `snapshot_review()` (#1500, @DanChaltiel) and the message tells you what variant is active (#1540). -* JUnit reporter now includes skip messages/reasons (@rfineman, #1507). +* JUnit reporter now includes skip messages/reasons (@rfineman, #1507). # testthat 3.1.1 @@ -337,32 +337,32 @@ * `expect_snapshot()` is no longer experimental. -* `expect_snapshot()` and friends gets an experimental new `variant` argument - which causes the snapshot to be saved in `_snaps/{variant}/{test}.md` instead +* `expect_snapshot()` and friends gets an experimental new `variant` argument + which causes the snapshot to be saved in `_snaps/{variant}/{test}.md` instead of `_snaps/{test}.md`. This allows you to generate (and compare) unique snapshots for different scenarios like operating system or R version (#1143). * `expect_snapshot()` gains a `transform` argument, which should be a function that takes a character vector of lines and returns a modified character vector - of lines. This makes it easy to remove sensitive (e.g. API keys) or - stochastic (e.g. random temporary directory names) from snapshot output + of lines. This makes it easy to remove sensitive (e.g. API keys) or + stochastic (e.g. random temporary directory names) from snapshot output (#1345). * `expect_snapshot_file()` now replaces previous `.new` snapshot if code fails again with a different value. -* `expect_snapshot_value()` now has an explicit `tolerance` argument which - uses the testthat default, thus making it more like `expect_equal()` rather - than `expect_identical()`. Set it to `NULL` if you want precise comparisons - (#1309). `expect_snapshot_value(style = "deparse")` now works with negative +* `expect_snapshot_value()` now has an explicit `tolerance` argument which + uses the testthat default, thus making it more like `expect_equal()` rather + than `expect_identical()`. Set it to `NULL` if you want precise comparisons + (#1309). `expect_snapshot_value(style = "deparse")` now works with negative values (#1342). * If a test containing multiple snapshots fails (or skips) in between snapshots, the later snapshots are now silently restored. (Previously this warned and reset all snapshots, not just later snapshots). - -* If you have multiple tests with the same name that use snapshots (not a good - idea), you will no longer get a warning. Instead the snapshots will be + +* If you have multiple tests with the same name that use snapshots (not a good + idea), you will no longer get a warning. Instead the snapshots will be aggregated across the tests. ## Breaking changes @@ -371,24 +371,24 @@ condition instead of the return value (#1371). Previously, they would only return the condition if the return value was `NULL`, leading to inconsistent behaviour. - + This is a breaking change to the 3rd edition. Where you could previously do: - + ``` expect_equal(expect_warning(f(), "warning"), "value") ``` - + You must now use condition expectations on the outside: - + ``` expect_warning(expect_equal(f(), "value"), "warning") - + # Equivalently, save the value before inspection expect_warning(value <- f(), "warning") expect_equal(value, "value") ``` - + This breaking change makes testthat more consistent. It also makes it possible to inspect both the value and the warning, which would otherwise require additional tools. @@ -403,22 +403,22 @@ * `expr_label()`, which is used to concisely describe expressions used in expectations, now does a better job of summarising infix function (#1442). -* `local_reproducible_output()` now sets the `max.print` option to 99999 +* `local_reproducible_output()` now sets the `max.print` option to 99999 (the default), so your tests are unaffected by any changes you might've made in your `.Rprofile` (1367). -* `ProgressReporter` (the default only) now stops at the end of a file; this - ensures that you see the results of all related tests, and ensures that - snapshots are handled consistently (#1402). - -* `ProgressReporter` now uses an env var to adjust the maximum number of +* `ProgressReporter` (the default only) now stops at the end of a file; this + ensures that you see the results of all related tests, and ensures that + snapshots are handled consistently (#1402). + +* `ProgressReporter` now uses an env var to adjust the maximum number of failures. This makes it easier to adjust when the tests are run in a subprocess, as is common when using RStudio (#1450). * `skip_on_os()` gains an `arch` argument so you can also choose to skip - selected architectures (#1421). + selected architectures (#1421). -* `test_that()` now correctly errors when an expectation fails when run +* `test_that()` now correctly errors when an expectation fails when run interactively (#1430). * `test_that()` now automatically and correctly generate an "empty test" @@ -428,7 +428,7 @@ * `testthat_tolerance()` no longer has an unused argument. # testthat 3.0.4 - + * The vendored Catch code used for `use_catch()` now uses a constant value for the stack size rather than relying on SIGSTKSZ. This fixes compatibility for recent glibc versions where SIGSTKSZ is no @@ -443,7 +443,7 @@ * `expect_snapshot_file()` gains a `compare` argument (#1378, @nbenn). This is a customisation point for how to compare old and new snapshot files. - + The functions `compare_file_binary()` and `compare_file_text()` are now exported from testthat to be supplied as `compare` argument. These implement the same behaviour as the old `binary` @@ -461,17 +461,17 @@ * New expectation: `expect_no_match()`. It complements `expect_match()` by checking if a string **doesn't match** a regular expression (@michaelquinn32, #1381). - + * Support setting the testthat edition via an environment variable (`TESTTHAT_EDITION`) as well (@michaelquinn32, #1386). - + # testthat 3.0.2 * Failing expectations now include a backtrace when they're not called directly - from within `test_that()` but are instead wrapped in some helper function + from within `test_that()` but are instead wrapped in some helper function (#1307). - -* `CheckReporter` now only records warnings when not on CRAN. Otherwise + +* `CheckReporter` now only records warnings when not on CRAN. Otherwise failed CRAN revdep checks tend to be cluttered up with warnings (#1300). It automatically cleans up `testthat-problems.rds` left over from previous runs if the latest run is successful (#1314). @@ -495,12 +495,12 @@ * `CheckReporter` results have been tweaked based on experiences from running R CMD check on many packages. Hopefully it should now be easier to see the biggest problems (i.e. failures and errors) while still having - skips and warnings available to check if needed (#1274). And now the full + skips and warnings available to check if needed (#1274). And now the full test name is always shown, no matter how long (#1268). * Catch C++ tests are no longer reported multiple times (#1237) and are automatically skipped on Solaris since Catch is not supported (#1257). - `use_catch()` makes it more clear that your package needs to suggest + `use_catch()` makes it more clear that your package needs to suggest xml2 (#1235). * `auto_test_package()` works once again (@mbojan, #1211, #1214). @@ -511,7 +511,7 @@ * `expect_snapshot_value(style = "deparse")` handles more common R data structures. - + * `expect_snapshot_value()` now passes `...` on to `waldo::compare()` (#1222). * `expect_snapshot_file()` gives a hint as to next steps when a failure @@ -529,10 +529,10 @@ * `RstudioReporter` has been renamed to `RStudioReporter`. -* `skip_if_not()` no longer appends "is not TRUE" to custom messages +* `skip_if_not()` no longer appends "is not TRUE" to custom messages (@dpprdan, #1247). -* `test_that()` now warns (3e only) if code doesn't have braces, since +* `test_that()` now warns (3e only) if code doesn't have braces, since that makes it hard to track the source of an error (#1280, @krlmlr). # testthat 3.0.0 @@ -548,38 +548,38 @@ Learn more in `vignette("third-edition")`. * `context()` is deprecated. -* `expect_identical()` and `expect_equal()` use `waldo::compare()` to - compare actual and expected results. This mostly yields much more +* `expect_identical()` and `expect_equal()` use `waldo::compare()` to + compare actual and expected results. This mostly yields much more informative output when the actual and expected values are different, but while writing it uncovered some bugs in the existing comparison code. - -* `expect_error()`, `expect_warning()`, `expect_message()`, and + +* `expect_error()`, `expect_warning()`, `expect_message()`, and `expect_condition()` now all use the same underlying logic: they capture the first condition that matches `class`/`regexp` and - allow anything else to bubble up (#998/#1052). They also warn if + allow anything else to bubble up (#998/#1052). They also warn if there are unexpected arguments that are never used. * The `all` argument to `expect_message()` and `expect_warning()` is now - deprecated. It was never a particularly good idea or well documented, + deprecated. It was never a particularly good idea or well documented, and is now superseded by the new condition capturing behaviour. -* `expect_equivalent()`, `expect_reference()`, `expect_is()` and +* `expect_equivalent()`, `expect_reference()`, `expect_is()` and `expect_that()` are deprecated. -* Messages are no longer automatically silenced. Either use +* Messages are no longer automatically silenced. Either use `suppressMessages()` to hide unimportant messages, or `expect_message()` to catch important messages (#1095). - + * `setup()` and `teardown()` are deprecated in favour of test fixtures. See `vignette("test-fixtures")` for more details. - + * `expect_known_output()`, `expect_known_value()`, `expect_known_hash()`, and `expect_equal_to_reference()` are all deprecated in favour of `expect_snapshot_output()` and `expect_snapshot_value()`. - -* `test_that()` now sets a number of options and env vars to make output as - reproducible as possible (#1044). Many of these options were previously + +* `test_that()` now sets a number of options and env vars to make output as + reproducible as possible (#1044). Many of these options were previously set in various places (in `devtools::test()`, `test_dir()`, `test_file()`, or `verify_output()`) but they have now been centralised. You can use in your own code, or when debugging tests interactively with @@ -600,25 +600,25 @@ See `vignette("snapshotting")` for more details. ## Reporters * `CheckReporter` (used inside R CMD check) now prints out all problems - (i.e. errors, failures, warnings and skips; and not just the first 10), + (i.e. errors, failures, warnings and skips; and not just the first 10), lists skips types, and records problems in machine readable format in `tests/testthat-problems.rds` (#1075). - + * New `CompactProgressReporter` tweaks the output of `ProgressReporter` for - use with a single file, as in `devtools::test_file()`. You can pick a + use with a single file, as in `devtools::test_file()`. You can pick a different default by setting `testthat.default_compact_reporter` to the name of a reporter. * `ProgressReporter` (the default reporter) now keeps the stack traces of an errors that happen before the before test, making problems substantially - easier to track down (#1004). It checks if you've exceeded the maximum number - of failures (from option `testthat.progress.max_fails`) after each + easier to track down (#1004). It checks if you've exceeded the maximum number + of failures (from option `testthat.progress.max_fails`) after each expectation, rather than at the end of each file (#967). It also gains - new random praise options that use emoji, and lists skipped tests by type + new random praise options that use emoji, and lists skipped tests by type (#1028). * `StopReporter` adds random praise emoji when a single test passes (#1094). - It has more refined display of failures, now using the same style + It has more refined display of failures, now using the same style as `CompactProgressReporter` and `ProgressReporter`. * `SummaryReporter` now records file start, not just context start. This @@ -630,17 +630,17 @@ See `vignette("snapshotting")` for more details. * Warnings now include a backtrace, making it easier to figure out where they came from. - -* Catch C++ tests now provide detailed results for each test. + +* Catch C++ tests now provide detailed results for each test. To upgrade existing code, re-run `testthat::use_catch()` (#1008). * Many reporters (e.g. the check reporter) no longer raise an error when any tests fail. Use the `stop_on_failure` argument to `devtools::test()` and `testthat::test_dir()` if your code relies on this. Alternatively, use `reporter = c("check", "fail")` to e.g. create a failing check reporter. ## Fixtures -* New `vignette("test-fixtures")` describes test fixtures; i.e. how to +* New `vignette("test-fixtures")` describes test fixtures; i.e. how to temporarily and cleanly change global state in order to test parts of - your code that otherwise would be hard to run (#1042). `setup()` and + your code that otherwise would be hard to run (#1042). `setup()` and `teardown()` are superseded in favour of test fixtures. * New `teardown_env()` for use with `withr::defer()`. This allows you to @@ -662,23 +662,23 @@ See `vignette("snapshotting")` for more details. warnings, and skips that occurred inside the test. * `test_that()` now errors if `desc` is not a string (#1161). - + * `test_file()` now runs helper, setup, and teardown code, and has the - same arguments as `test_dir()` (#968). Long deprecated `encoding` argument + same arguments as `test_dir()` (#968). Long deprecated `encoding` argument has been removed. * `test_dir()` now defaults `stop_on_failure` to `TRUE` for consistency with other `test_` functions. The `wrap` argument has been deprecated; it's not clear that it should ever have been exposed. -* New `test_local()` tests a local source package directory. It's equivalent +* New `test_local()` tests a local source package directory. It's equivalent to `devtools::test()` but doesn't require devtools and all its dependencies to be installed (#1030). ## Minor improvements and bug fixes * testthat no longer supports tests stored in `inst/tests`. This has been - deprecated since testthat 0.11.0 (released in 2015). `test_package()` + deprecated since testthat 0.11.0 (released in 2015). `test_package()` (previously used for running tests in R CMD check) will fail silently if no tests are found to avoid breaking old packages on CRAN (#1149). @@ -699,9 +699,9 @@ See `vignette("snapshotting")` for more details. * `expect_true()`, `expect_false()`, and `expect_null()` now use waldo to produce more informative failures. -* `verify_output()` no longer always fails if output contains a carriage - return character ("\r") (#1048). It uses the `pdf()` device instead of - `png()` so it works on systems without X11 (#1011). And it uses +* `verify_output()` no longer always fails if output contains a carriage + return character ("\r") (#1048). It uses the `pdf()` device instead of + `png()` so it works on systems without X11 (#1011). And it uses `waldo::compare()` to give more informative failures. # testthat 2.3.2 @@ -734,7 +734,7 @@ This release mostly focusses on an overhaul of how testthat works with condition makes it possible to generate messages at print-time rather than signal-time. -* `expect_error()` gets a better warning message when you test for a custom +* `expect_error()` gets a better warning message when you test for a custom error class with `regexp`. * New `exp_signal()` function is a condition signaller that @@ -745,8 +745,8 @@ This release mostly focusses on an overhaul of how testthat works with condition it possible to signal warnings or messages with a different condition signaller (#874). -* `ListReporter` now tracks expectations and errors, even when they occur - outside of tests. This ensures that `stop_on_failure` matches the results +* `ListReporter` now tracks expectations and errors, even when they occur + outside of tests. This ensures that `stop_on_failure` matches the results displayed by the reporter (#936). * You can silence warnings about untested error classes by @@ -754,7 +754,7 @@ This release mostly focusses on an overhaul of how testthat works with condition should be lazily registered, e.g. with `vctrs::s3_register()`. This is useful for introducing an experimental error class without encouraging users to depend on the class in their tests. - + * Respect options(warn = -1) to ignore all warnings (@jeroen #958). ## Expectations @@ -788,33 +788,33 @@ This release mostly focusses on an overhaul of how testthat works with condition ## Other minor improvements and bug fixes * `compare.numeric()` uses a more sophisticated default tolerance that will - automatically skip tests that rely on numeric tolerance if long doubles are + automatically skip tests that rely on numeric tolerance if long doubles are not available (#940). -* `JunitReporter` now reports tests in ISO 8601 in the UTC timezone and +* `JunitReporter` now reports tests in ISO 8601 in the UTC timezone and uses the maximum precision of 3 decimal places (#923). # testthat 2.2.1 -* Repair regression in `test_rd()` and add a couple of tests to hopefully +* Repair regression in `test_rd()` and add a couple of tests to hopefully detect the problem earlier in the future. # testthat 2.2.0 ## New features -* New `verify_output()` is designed for testing output aimed at humans +* New `verify_output()` is designed for testing output aimed at humans (most commonly print methods and error messages). It is a regression test that saves output in a way that makes it easy to review. It is automatically skipped on CRAN (#782, #834). ## Minor improvements and bug fixes -* `as.data.frame.testthat_results()` now always returns a data frame with 13 +* `as.data.frame.testthat_results()` now always returns a data frame with 13 columns (@jozefhajnala, #887). -* `auto_test_package()` now correctly handles helper files - (`tests/testthat/helper-*.R`), automatically reloading all code and +* `auto_test_package()` now correctly handles helper files + (`tests/testthat/helper-*.R`), automatically reloading all code and rerunning all tests (@CorradoLanera, #376, #896). * `expect_match()` now displays `info` even when match length is 0 (#867). @@ -822,23 +822,23 @@ This release mostly focusses on an overhaul of how testthat works with condition * `expect_s3_class()` gains new `exact` argument that allows you to check for an exact class match, not just inheritance (#885). -* `fail()` and `succeed()` gain `info` argument, which is passed along to +* `fail()` and `succeed()` gain `info` argument, which is passed along to `expect()`. - -* `test_examples()` gets some minor fixes: it now returns the results - invisibly, doesn't assume that examples should contain tests, and + +* `test_examples()` gets some minor fixes: it now returns the results + invisibly, doesn't assume that examples should contain tests, and documents that you shouldn't be using it routinely (#841). * `test_file()` only calls `Reporter$end_context()` if a context was started, fixing an error in `TeamcityReporter` (@atheriel, #883). -* `skip()` now reports reason for skipping as: `Reason: {skip condition}` +* `skip()` now reports reason for skipping as: `Reason: {skip condition}` (@patr1ckm, #868). -* `skip_if()` and `skip_if_not()` now report `Reason: {skip condition} is TRUE` +* `skip_if()` and `skip_if_not()` now report `Reason: {skip condition} is TRUE` and `Reason: {skip condition} is not TRUE` respectively (@ patr1ckm, #868). - -* `skip_if_translated()` now tests for translation of a specific message. + +* `skip_if_translated()` now tests for translation of a specific message. This is more robust than the previous approach because translation happens message-by-message, not necessarily for the entire session (#879) (and in general, it's impossible to determine what language R is currently @@ -846,7 +846,7 @@ This release mostly focusses on an overhaul of how testthat works with condition * `skip_on_covr()` allows you to skip tests when covr is running. (@ianmcook, #895) - + * `expect_known_value()` gains a new serialisation `version` argument, defaulting to 2. Prevents the `.rds` files created to hold reference objects from making a package appear to require R >= 3.5 (#888 @jennybc). @@ -882,8 +882,8 @@ This release mostly focusses on an overhaul of how testthat works with condition * `expect_error()` now returns the error object as documentated (#724). It also now warns if you're using a classed expectation and you're - not using the `class` argument. This is good practice as it decouples the - error object (which tends to be stable) from its rendering to the user + not using the `class` argument. This is good practice as it decouples the + error object (which tends to be stable) from its rendering to the user (which tends to be fragile) (#816). * `expect_identical()` gains a `...` argument to pass additional arguments @@ -893,13 +893,13 @@ This release mostly focusses on an overhaul of how testthat works with condition and `NA` arguments appropriately (#732), and no longer require the inputs to be numeric. -* `expect_output()` gains a `width` argument, allowing you to control the - output width. This does not inherit from `getOption("width")`, ensuring +* `expect_output()` gains a `width` argument, allowing you to control the + output width. This does not inherit from `getOption("width")`, ensuring that tests return the same results regardless of environment (#805). * `expect_setequal()` now works with more vector types (including lists), - because it uses `%in%`, rather than `sort()`. It also warns if the inputs - are named, as this suggests that your mental model of how `expect_setequal()` + because it uses `%in%`, rather than `sort()`. It also warns if the inputs + are named, as this suggests that your mental model of how `expect_setequal()` works is wrong (#750). * `is_true()` and `is_false()` have been deprecated because they conflict @@ -914,7 +914,7 @@ This release mostly focusses on an overhaul of how testthat works with condition * `JUnitReporter` no longer replaces `.` in class names (#753), and creates output that should be more compatible with Jenkins (#806, @comicfans). -* `ListReporter` now records number of passed tests and original results in +* `ListReporter` now records number of passed tests and original results in new columns (#675). * `ProgressReporter`, the default reporter, now: @@ -922,20 +922,20 @@ This release mostly focusses on an overhaul of how testthat works with condition * Automatically generates a context from the file name. We no longer recommend the use of `context()` and instead encourage you to delete it, allowing the context to be autogenerated from the file name. - + This also eliminates the error that occurred if tests can before the - first `context()` (#700, #705). + first `context()` (#700, #705). - * Gains a `update_interval` parameter to control how often updates are + * Gains a `update_interval` parameter to control how often updates are printed (default 0.1 s). This prevents large printing overhead for very fast tests. (#701, @jimhester) * Uses a 3 character wide column to display test successes, so up to - 999 successful tests can be displayed without changing the alignment + 999 successful tests can be displayed without changing the alignment (#712). -* `reporter$end_reporter()` is now only called when testing completes - successfully. This ensures that you don't get unnecessary output when the +* `reporter$end_reporter()` is now only called when testing completes + successfully. This ensures that you don't get unnecessary output when the test fails partway through (#727). ## Skips @@ -943,7 +943,7 @@ This release mostly focusses on an overhaul of how testthat works with condition * `skip_if_offline()` skips tests if an internet connection is not available (#685). -* `skip_on_ci()` skips tests on continuous integration systems +* `skip_on_ci()` skips tests on continuous integration systems (@mbjoseph, #825) by looking for a `CI` env var.. ## Other new features @@ -962,14 +962,14 @@ This release mostly focusses on an overhaul of how testthat works with condition * `expect_s3_class()` now works with unquoting (@jalsalam, #771). -* `expectation` objects now contain the failure message, even when successful +* `expectation` objects now contain the failure message, even when successful (#836) -* `devtools::test()` no longer fails if run multiple times within the same R +* `devtools::test()` no longer fails if run multiple times within the same R session for a package containing Catch tests. ([devtools #1832](https://github.com/r-lib/devtools/issues/1832)) -* New `testing_package()` retrieves the name of the package currently being +* New `testing_package()` retrieves the name of the package currently being tested (#699). * `run_testthat_tests` C entrypoint is registered more robustly. @@ -977,7 +977,7 @@ This release mostly focusses on an overhaul of how testthat works with condition * `skip()` now always produces a `message` of length 1, as expected elsewhere in testthat (#791). -* Warnings are passed through even when `options(warn = 2)` is set +* Warnings are passed through even when `options(warn = 2)` is set (@yutannihilation, #721). # testthat 2.0.1 @@ -988,16 +988,16 @@ This release mostly focusses on an overhaul of how testthat works with condition ## Breaking API changes -* "Can't mock functions in base packages": You can no longer use `with_mock()` - to mock functions in base packages, because this no longer works in +* "Can't mock functions in base packages": You can no longer use `with_mock()` + to mock functions in base packages, because this no longer works in R-devel due to changes with the byte code compiler. I recommend using - [mockery](https://github.com/r-lib/mockery) or + [mockery](https://github.com/r-lib/mockery) or [mockr](https://github.com/krlmlr/mockr) instead. * The order of arguments to `expect_equivalent()` and `expect_error()` has changed slightly as both now pass `...` on another function. This reveals itself with a number of different errors, like: - + * 'what' must be a character vector * 'check.attributes' must be logical * 'tolerance' should be numeric @@ -1005,23 +1005,23 @@ This release mostly focusses on an overhaul of how testthat works with condition * threw an error with unexpected class * argument "quo" is missing, with no default * argument is missing, with no default - - If you see one of these errors, check the number, order, and names of + + If you see one of these errors, check the number, order, and names of arguments to the expectation. -* "Failure: (unknown)". The last release mistakenly failed to test +* "Failure: (unknown)". The last release mistakenly failed to test bare expectations not wrapped inside `test_that()`. If you see "(unknown)" in a failure message, this is a failing expectation that you previously weren't seeing. As well as fixing the failure, please also wrap inside a `test_that()` with an informative name. - -* "Error: the argument has already been evaluated": the way in which - expectations now need create labels has changed, which caused a couple - of failures with unusual usage when combined with `Reduce`, `lapply()`, + +* "Error: the argument has already been evaluated": the way in which + expectations now need create labels has changed, which caused a couple + of failures with unusual usage when combined with `Reduce`, `lapply()`, and `Map()`. Avoid these functions in favour of for loops. I also recommend - reading the section below on quasiquotation support in order to create more + reading the section below on quasiquotation support in order to create more informative failure messages. - + ## Expectations ### New and improved expectations @@ -1029,7 +1029,7 @@ This release mostly focusses on an overhaul of how testthat works with condition * `expect_condition()` works like `expect_error()` but captures any condition, not just error conditions (#621). -* `expect_error()` gains a `class` argument that allows you to make an +* `expect_error()` gains a `class` argument that allows you to make an assertion about the class of the error object (#530). * `expect_reference()` checks if two names point to the same object (#622). @@ -1047,7 +1047,7 @@ This release mostly focusses on an overhaul of how testthat works with condition where translations are likely to occur (#565). Use this to avoid spurious failures when checking the text of error messages in non-English locales. - + * `skip_if_not_installed()` gains new `minimum_version` argument (#487, #499). ### Known good values @@ -1056,14 +1056,14 @@ We have identified a useful family of expectations that compares the results of * `expect_known_output()` replaces `expect_output_file()`, which has been soft-deprecated. It now defaults to `update = TRUE` and warn, rather - than failing on the first run. It gains a `print` argument to automatically - print the input (#627). It also sets the width option to 80 to ensure + than failing on the first run. It gains a `print` argument to automatically + print the input (#627). It also sets the width option to 80 to ensure consistent output across environments (#514) * `expect_known_value()` replaces `expect_equal_to_reference()`, which has been soft-deprecated. It gains an update argument defaulting to `TRUE`. This changes behaviour from the previous version, and soft-deprecated - `expect_equal_to_reference()` gets `update = FALSE`. + `expect_equal_to_reference()` gets `update = FALSE`. * `expect_known_failure()` stored and compares the failure message from an expectation. It's a useful regression test when developing informative @@ -1102,7 +1102,7 @@ If you unquote the values using `!!`, you get the failure message `` `f(4L)` not * New `setup()` and `teardown()` functions allow you to run at the start and end of each test file. This is useful if you want to pair cleanup code - with the code that messes up state (#536). + with the code that messes up state (#536). * Two new prefixes are recognised in the `test/` directory. Files starting with `setup` are run before tests (but unlike `helpers` are not run in @@ -1113,16 +1113,16 @@ If you unquote the values using `!!`, you get the failure message `` `f(4L)` not * All files are now read and written as UTF-8 (#510, #605). -* `is_testing()` allows you to tell if your code is being run inside a +* `is_testing()` allows you to tell if your code is being run inside a testing environment (#631). Rather than taking a run-time dependency on testthat you may want to inline the function into your own package: - + ```R is_testing <- function() { identical(Sys.getenv("TESTTHAT"), "true") } ``` - + It's frequently useful to combine with `interactive()`. ### New default reporter @@ -1134,13 +1134,13 @@ A new default reporter, `ReporterProgress`, produces more aesthetically pleasing * Output colours have been tweaked to be consistent with clang: warnings are now in magenta, and skips in blue. -* New `default_reporter()` and `check_reporter()` which returns the default +* New `default_reporter()` and `check_reporter()` which returns the default reporters for interactive and check environments (#504). -* New `DebugReporter` that calls a better version of `recover()` in case of +* New `DebugReporter` that calls a better version of `recover()` in case of failures, errors, or warnings (#360, #470). -* New `JunitReporter` generates reports in JUnit compatible format. +* New `JunitReporter` generates reports in JUnit compatible format. (#481, @lbartnik; #640, @nealrichardson; #575) * New `LocationReporter` which just prints the location of every expectation. @@ -1148,23 +1148,23 @@ A new default reporter, `ReporterProgress`, produces more aesthetically pleasing * `SummaryReporter` received a number of smaller tweaks - * Aborts testing as soon the limit given by the option + * Aborts testing as soon the limit given by the option `testthat.summary.max_reports` (default 10) is reached (#520). - + * New option `testthat.summary.omit_dots = TRUE` hides the progress dots speeding up tests by a small amount (#502). - * Bring back random praise and encouragement which I accidentally dropped + * Bring back random praise and encouragement which I accidentally dropped (#478). -* New option `testthat.default_check_reporter`, defaults to `"check"`. +* New option `testthat.default_check_reporter`, defaults to `"check"`. Continuous Integration system can set this option before evaluating package test sources in order to direct test result details to known location. -* All reporters now accept a `file` argument on initialization. If provided, - reporters will write the test results to that path. This output destination - can also be controlled with the option `testthat.output_file` +* All reporters now accept a `file` argument on initialization. If provided, + reporters will write the test results to that path. This output destination + can also be controlled with the option `testthat.output_file` (#635, @nealrichardson). ## Deprecated functions @@ -1175,20 +1175,20 @@ A new default reporter, `ReporterProgress`, produces more aesthetically pleasing ## Minor improvements and bug fixes * Updated Catch to 1.9.6. `testthat` now understands and makes use of the package - routine registration mechanism required by CRAN with R >= 3.4.0. + routine registration mechanism required by CRAN with R >= 3.4.0. (@kevinushey) -* Better reporting for deeply nested failures, limiting the stack trace to the +* Better reporting for deeply nested failures, limiting the stack trace to the first and last 10 entries (#474). -* Bare expectations notify the reporter once again. This is achieved by running - all tests inside `test_code()` by default (#427, #498). This behaviour can be +* Bare expectations notify the reporter once again. This is achieved by running + all tests inside `test_code()` by default (#427, #498). This behaviour can be overridden by setting `wrap = FALSE` in `test_dir()` and friends (#586). -* `auto_test()` and `auto_test_package()` provide `hash` parameter to enable +* `auto_test()` and `auto_test_package()` provide `hash` parameter to enable switching to faster, time-stamp-based modification detection - (#598, @katrinleinweber). `auto_test_package()` works correctly on windows - (#465). + (#598, @katrinleinweber). `auto_test_package()` works correctly on windows + (#465). * `capture_output_lines()` is now exported (#504). @@ -1200,7 +1200,7 @@ A new default reporter, `ReporterProgress`, produces more aesthetically pleasing * `compare.numeric()` respects `check.attributes()` so `expect_equivalent()` correctly ignores attributes of numeric vectors (#485). -* Output expectations (`expect_output()`, `expect_message()`, +* Output expectations (`expect_output()`, `expect_message()`, `expect_warning()`, and `expect_silent()`) all invisibly return the first argument to be consistent with the other expectations (#615). @@ -1212,34 +1212,34 @@ A new default reporter, `ReporterProgress`, produces more aesthetically pleasing that forward to `expect_match()`, like `expect_output()`, `expect_message()`, `expect_warning()`, and `expect_error()`. -* `expect_match()` escapes special regular expression characters when printing +* `expect_match()` escapes special regular expression characters when printing (#522, @jimhester). * `expect_message()`, `expect_warning()` and `expect_error()` produce clearer failure messages. -* `find_test_scripts()` only looks for `\.[rR]` in the extension +* `find_test_scripts()` only looks for `\.[rR]` in the extension (#492, @brodieG) - -* `test_dir()`, `test_package()`, `test_check()` unset the `R_TESTS` env var + +* `test_dir()`, `test_package()`, `test_check()` unset the `R_TESTS` env var (#603) * `test_examples()` now works with installed packages as well as source packages (@jimhester, #532). -* `test_dir()`, `test_package()`, and `test_check()` gain `stop_on_failure` - and `stop_on_waring` arguments that control whether or not an error +* `test_dir()`, `test_package()`, and `test_check()` gain `stop_on_failure` + and `stop_on_waring` arguments that control whether or not an error is signalled if any tests fail or generate warnings (#609, #619). * `test_file()` now triggers a `gc()` after tests are run. This helps to ensure that finalisers are run earlier (#535). -* `test_path()` now generates correct path when called from within +* `test_path()` now generates correct path when called from within `tools::testInstalledPackage()` (#542). * `test_path()` no longer assumes that the path exists (#448). -* `test_that()` calls without any expectations generate a default `skip()` +* `test_that()` calls without any expectations generate a default `skip()` (#413). * `test_dir()` gains `load_helpers` argument (#505). @@ -1247,7 +1247,7 @@ A new default reporter, `ReporterProgress`, produces more aesthetically pleasing * `show_failures()` simply prints a failure if it occurs. This makes it easier to show failures in examples. -* `with_mock()` disallows mocking of functions in base packages, because this +* `with_mock()` disallows mocking of functions in base packages, because this doesn't work with the current development version of R (#553). # testthat 1.0.2 @@ -1266,20 +1266,20 @@ A new default reporter, `ReporterProgress`, produces more aesthetically pleasing * Fixed an out-of-bounds memory access when routing Catch output through `Rprintf()`. (@kevinushey) - + * Ensure that unit tests run on R-oldrel (remove use of `dir.exists()`). (@kevinushey) - + * Improved overriding of calls to `exit()` within Catch, to ensure compatibility with GCC 6.0. (@krlmlr) -* Hardened formatting of difference messages, previously the presence of `%` +* Hardened formatting of difference messages, previously the presence of `%` characters could affect the output (#446, @krlmlr). - -* Fixed errors in `expect_equal()` when comparing numeric vectors with and + +* Fixed errors in `expect_equal()` when comparing numeric vectors with and without attributes (#453, @krlmlr). -* `auto_test()` and `auto_test_package()` show only the results of the +* `auto_test()` and `auto_test_package()` show only the results of the current test run and not of previously failed runs (#456, @krlmlr). # testthat 1.0.0 @@ -1293,11 +1293,11 @@ The `expectation()` function now expects an expectation type (one of "success", The expectation system got a thorough overhaul (#217). This primarily makes it easier to add new expectations in the future, but also included a thorough review of the documentation, ensuring that related expectations are documented together, and have evocative names. One useful change is that most expectations invisibly return the input `object`. This makes it possible to chain together expectations with magrittr: - + ```R -factor("a") %>% - expect_type("integer") %>% - expect_s3_class("factor") %>% +factor("a") %>% + expect_type("integer") %>% + expect_s3_class("factor") %>% expect_length(1) ``` @@ -1310,7 +1310,7 @@ Another change is that `expect_output()` now requires you to explicitly print th There are six new expectations: -* `expect_type()` checks the _type_ of the object (#316), +* `expect_type()` checks the _type_ of the object (#316), `expect_s3_class()` tests that an object is S3 with given class, `expect_s4_class()` tests that an object is S4 with given class (#373). I recommend using these more specific expectations instead of the @@ -1343,19 +1343,19 @@ The reporters system class has been considerably refactored to make existing rep * Reporters classes are now R6 classes instead of Reference Classes. -* Each callbacks receive the full context: +* Each callbacks receive the full context: * `add_results()` is passed context and test as well as the expectation. * `test_start()` and `test_end()` both get the context and test. - * `context_start()` and `context_end()` get the context. + * `context_start()` and `context_end()` get the context. * Warnings are now captured and reported in most reporters. * The reporter output goes to the original standard output and is not affected by `sink()` and `expect_output()` (#420, @krlmlr). * The default summary reporter lists all warnings (#310), and all skipped - tests (@krlmlr, #343). New option `testthat.summary.max_reports` limits - the number of reports printed by the summary reporter. The default is 15 + tests (@krlmlr, #343). New option `testthat.summary.max_reports` limits + the number of reports printed by the summary reporter. The default is 15 (@krlmlr, #354). * `MinimalReporter` correct labels errors with E and failures with F (#311). @@ -1365,8 +1365,8 @@ The reporters system class has been considerably refactored to make existing rep ## Other -* New functions `capture_output()`, `capture_message()`, and - `capture_warnings()` selectively capture function output. These are +* New functions `capture_output()`, `capture_message()`, and + `capture_warnings()` selectively capture function output. These are used in `expect_output()`, `expect_message()` and `expect_warning()` to allow other types out output to percolate up (#410). @@ -1376,7 +1376,7 @@ The reporters system class has been considerably refactored to make existing rep * `test_file()`, `test_check()`, and `test_package()` now attach testthat so all testing functions are available. -* `source_test_helpers()` gets a useful default path: the testthat tests +* `source_test_helpers()` gets a useful default path: the testthat tests directory. It defaults to the `test_env()` to be consistent with the other source functions (#415). @@ -1397,24 +1397,24 @@ The reporters system class has been considerably refactored to make existing rep * `source_file()` exports the function testthat uses to load files from disk. -* `test_that()` returns a `logical` that indicates if all tests were successful +* `test_that()` returns a `logical` that indicates if all tests were successful (#360, @krlmlr). -* `find_reporter()` (and also all high-level testing functions) support a vector - of reporters. For more than one reporter, a `MultiReporter` is created +* `find_reporter()` (and also all high-level testing functions) support a vector + of reporters. For more than one reporter, a `MultiReporter` is created (#307, @krlmlr). -* `with_reporter()` is used internally and gains new argument +* `with_reporter()` is used internally and gains new argument `start_end_reporter = TRUE` (@krlmlr, 355). * `set_reporter()` returns old reporter invisibly (#358, @krlmlr). -* Comparing integers to non-numbers doesn't raise errors anymore, and falls - back to string comparison if objects have different lengths. Complex numbers +* Comparing integers to non-numbers doesn't raise errors anymore, and falls + back to string comparison if objects have different lengths. Complex numbers are compared using the same routine (#309, @krlmlr). -* `compare.numeric()` and `compare.character()` received another overhaul. This - should improve behaviour of edge cases, and provides a strong foundation for +* `compare.numeric()` and `compare.character()` received another overhaul. This + should improve behaviour of edge cases, and provides a strong foundation for further work. Added `compare.POSIXt()` for better reporting of datetime differences. @@ -1441,14 +1441,14 @@ The reporters system class has been considerably refactored to make existing rep * Praise gets more diverse thanks to the praise package, and you'll now get random encouragement if your tests don't pass. -* testthat no longer muffles warning messages. If you don't want to see them - in your output, you need to explicitly quiet them, or use an expectation that +* testthat no longer muffles warning messages. If you don't want to see them + in your output, you need to explicitly quiet them, or use an expectation that captures them (e.g. `expect_warning()`). (#254) * Use tests in `inst/tests` is formally deprecated. Please move them into `tests/testthat` instead (#231). -* `expect_match()` now encodes the match, as well as the output, in the +* `expect_match()` now encodes the match, as well as the output, in the expectation message (#232). * `expect_is()` gives better failure message when testing multiple inheritance, @@ -1457,7 +1457,7 @@ The reporters system class has been considerably refactored to make existing rep * Corrected argument order in `compare.numeric()` (#294). * `comparison()` constructure now checks its arguments are the correct type and - length. This bugs a bug where tests failed with an error like "values must be + length. This bugs a bug where tests failed with an error like "values must be length 1, but FUN(X[[1]]) result is length 2" (#279). * Added `skip_on_os()`, to skip tests on specified operating systems @@ -1482,8 +1482,8 @@ The reporters system class has been considerably refactored to make existing rep * Deprecated `library_if_available()` has been removed. -* test (`test_dir()`, `test_file()`, `test_package()`, `test_check()`) functions - now return a `testthat_results` object that contains all results, and can be +* test (`test_dir()`, `test_file()`, `test_package()`, `test_check()`) functions + now return a `testthat_results` object that contains all results, and can be printed or converted to data frame. * `test_dir()`, `test_package()`, and `test_check()` have an added `...` @@ -1518,7 +1518,7 @@ The reporters system class has been considerably refactored to make existing rep * `skip_on_travis()` allows you to skip tests when run on Travis CI. (Thanks to @mllg) -* `colourise()` was removed. (Colour is still supported, via the `crayon` +* `colourise()` was removed. (Colour is still supported, via the `crayon` package.) * Mocks can now access values local to the call of `with_mock` (#193, @krlmlr). From 6166099af57fb303fd7dd9c73afc8f697fb6749e Mon Sep 17 00:00:00 2001 From: Hadley Wickham Date: Tue, 29 Oct 2024 16:09:58 -0500 Subject: [PATCH 13/36] Display expected condition class (#2003) In `expect_condition()` and friends, when `class` is supplied and the expectation fails. Fixes #1987 --- NEWS.md | 1 + R/expect-condition.R | 10 +++++++--- R/snapshot.R | 3 +-- tests/testthat/_snaps/expect-condition.md | 4 ++++ tests/testthat/test-expect-condition.R | 5 +++++ 5 files changed, 18 insertions(+), 5 deletions(-) diff --git a/NEWS.md b/NEWS.md index 04d46636e..32b7ca44f 100644 --- a/NEWS.md +++ b/NEWS.md @@ -1,5 +1,6 @@ # testthat (development version) +* `expect_condition()` and friends now include the `class` of the expected condition in the failure mesage, if used (#1987). * `LANGUAGE` is now set to `"C"` in reprocucible environments (i.e. `test_that()` blocks) to disable translations. This fixes warnings about being unable to set the language to `"en"` (#1925). diff --git a/R/expect-condition.R b/R/expect-condition.R index 7bf2395d4..6f299cc59 100644 --- a/R/expect-condition.R +++ b/R/expect-condition.R @@ -278,7 +278,7 @@ expect_condition_matching <- function(base_class, ) expected <- !identical(regexp, NA) - msg <- compare_condition_3e(base_class, act$cap, act$lab, expected) + msg <- compare_condition_3e(base_class, class, act$cap, act$lab, expected) # Access error fields with `[[` rather than `$` because the # `$.Throwable` from the rJava package throws with unknown fields @@ -375,10 +375,14 @@ capture_matching_condition <- function(expr, matches) { # Helpers ----------------------------------------------------------------- -compare_condition_3e <- function(cond_type, cond, lab, expected) { +compare_condition_3e <- function(cond_type, cond_class, cond, lab, expected) { if (expected) { if (is.null(cond)) { - sprintf("%s did not throw the expected %s.", lab, cond_type) + if (is.null(cond_class)) { + sprintf("%s did not throw the expected %s.", lab, cond_type) + } else { + sprintf("%s did not throw a %s with class <%s>.", lab, cond_type, cond_class) + } } else { NULL } diff --git a/R/snapshot.R b/R/snapshot.R index 421933f59..168a9b822 100644 --- a/R/snapshot.R +++ b/R/snapshot.R @@ -89,7 +89,7 @@ expect_snapshot <- function(x, ) # Use expect_error() machinery to confirm that error is as expected - msg <- compare_condition_3e("error", state$error, quo_label(x), error) + msg <- compare_condition_3e("error", NULL, state$error, quo_label(x), error) if (!is.null(msg)) { if (error) { expect(FALSE, msg, trace = state$error[["trace"]]) @@ -362,4 +362,3 @@ with_is_snapshotting <- function(code) { withr::local_envvar(TESTTHAT_IS_SNAPSHOT = "true") code } - diff --git a/tests/testthat/_snaps/expect-condition.md b/tests/testthat/_snaps/expect-condition.md index 474850cfe..7afc7df7d 100644 --- a/tests/testthat/_snaps/expect-condition.md +++ b/tests/testthat/_snaps/expect-condition.md @@ -25,6 +25,10 @@ Message: dispatched! Class: foobar/rlang_error/error/condition +# condition class is included in failure + + `f1()` did not throw a condition with class . + # unused arguments generate a warning Code diff --git a/tests/testthat/test-expect-condition.R b/tests/testthat/test-expect-condition.R index f09276889..d5cff5b02 100644 --- a/tests/testthat/test-expect-condition.R +++ b/tests/testthat/test-expect-condition.R @@ -149,6 +149,11 @@ test_that("captured condition is muffled", { expect_error(expect_condition(stop("Hi")), NA) }) +test_that("condition class is included in failure", { + f1 <- function() signal(class = "foo") + expect_snapshot_failure(expect_condition(f1(), class = "bar")) +}) + test_that("only matching condition is captured, others bubble up", { f1 <- function() { message("Hi") From eb8c17ca0d75ed06c8fc3e2ffa69a3b802fdf0ce Mon Sep 17 00:00:00 2001 From: Hadley Wickham Date: Tue, 29 Oct 2024 16:12:31 -0500 Subject: [PATCH 14/36] Clarify curl installation status Fixes #1963 --- R/skip.R | 2 +- man/skip.Rd | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/R/skip.R b/R/skip.R index d0a1c7d97..4d6e693b7 100644 --- a/R/skip.R +++ b/R/skip.R @@ -19,7 +19,7 @@ #' #' * `skip_if_offline()` skips if an internet connection is not available #' (using [curl::nslookup()]) or if the test is run on CRAN. Requires -#' the curl packages to be installed. +#' \{curl\} to be installed and included in the dependencies of your package. #' #' * `skip_if_translated("msg")` skips tests if the "msg" is translated. #' diff --git a/man/skip.Rd b/man/skip.Rd index fa1bf7c76..2537a96f4 100644 --- a/man/skip.Rd +++ b/man/skip.Rd @@ -79,7 +79,7 @@ need to check for them specifically, unless they are particularly difficult to install. \item \code{skip_if_offline()} skips if an internet connection is not available (using \code{\link[curl:nslookup]{curl::nslookup()}}) or if the test is run on CRAN. Requires -the curl packages to be installed. +\{curl\} to be installed and included in the dependencies of your package. \item \code{skip_if_translated("msg")} skips tests if the "msg" is translated. \item \code{skip_on_bioc()} skips on Bioconductor (using the \code{IS_BIOC_BUILD_MACHINE} env var). From bf096598562deb97a0ce89e768530e5dfce27646 Mon Sep 17 00:00:00 2001 From: Hadley Wickham Date: Tue, 29 Oct 2024 16:17:56 -0500 Subject: [PATCH 15/36] Check that snapshots always strip \r (#2004) Closes #1958 --- tests/testthat/_snaps/snapshot.md | 8 ++++++++ tests/testthat/test-snapshot.R | 5 +++++ tests/testthat/test-verify-output.R | 6 ++++++ 3 files changed, 19 insertions(+) diff --git a/tests/testthat/_snaps/snapshot.md b/tests/testthat/_snaps/snapshot.md index eb044544e..09dc8308f 100644 --- a/tests/testthat/_snaps/snapshot.md +++ b/tests/testthat/_snaps/snapshot.md @@ -44,6 +44,14 @@ Error in `f()`: ! 4 +# line-endings fixed before comparison + + Code + cat(x) + Output + a + b + # multiple outputs of same type are collapsed Code diff --git a/tests/testthat/test-snapshot.R b/tests/testthat/test-snapshot.R index ab35726b4..ff15d1de4 100644 --- a/tests/testthat/test-snapshot.R +++ b/tests/testthat/test-snapshot.R @@ -30,6 +30,11 @@ test_that("empty lines are preserved", { expect_snapshot(f(), error = TRUE) }) +test_that("line-endings fixed before comparison", { + x <- "a\n\rb" + expect_snapshot(cat(x)) +}) + test_that("multiple outputs of same type are collapsed", { expect_snapshot({ x <- 1 diff --git a/tests/testthat/test-verify-output.R b/tests/testthat/test-verify-output.R index e9c5295ca..4a3c5889d 100644 --- a/tests/testthat/test-verify-output.R +++ b/tests/testthat/test-verify-output.R @@ -91,3 +91,9 @@ test_that("verify_exec() doesn't leave tempfiles around", { expect_equal(before, after) }) + +test_that("verify_exec() strips CR", { + act <- verify_exec(quote(cat("\r\n"))) + exp <- verify_exec(quote(cat("\n"))) + expect_equal(act[-1], exp[-1]) +}) From 0d1d1a3709bc96b1fbd8fbec0d6218b92909b607 Mon Sep 17 00:00:00 2001 From: Hadley Wickham Date: Tue, 29 Oct 2024 16:39:09 -0500 Subject: [PATCH 16/36] Deprecate `with_mock()` and `local_mock()` (#2005) Fixes #1999 --- NEWS.md | 1 + R/mock.R | 19 ++--- cran-comments.md | 9 ++ man/with_mock.Rd | 17 ++-- tests/testthat/_snaps/mock.md | 18 ++++ tests/testthat/test-mock.R | 152 +--------------------------------- 6 files changed, 43 insertions(+), 173 deletions(-) create mode 100644 tests/testthat/_snaps/mock.md diff --git a/NEWS.md b/NEWS.md index 32b7ca44f..550de611e 100644 --- a/NEWS.md +++ b/NEWS.md @@ -1,5 +1,6 @@ # testthat (development version) +* `with_mock()` and `local_mock()` have been unconditionally deprecated as they will no longer work in future versions of R (#1999). * `expect_condition()` and friends now include the `class` of the expected condition in the failure mesage, if used (#1987). * `LANGUAGE` is now set to `"C"` in reprocucible environments (i.e. `test_that()` blocks) to disable translations. This fixes warnings diff --git a/R/mock.R b/R/mock.R index 076cf9b50..c81ba7a2d 100644 --- a/R/mock.R +++ b/R/mock.R @@ -1,19 +1,14 @@ #' Mock functions in a package. #' #' @description -#' `r lifecycle::badge("superseded")` +#' `r lifecycle::badge("deprecated")` #' -#' `with_mock()` and `local_mock()` are superseded in favour of +#' `with_mock()` and `local_mock()` are deprecated in favour of #' [with_mocked_bindings()] and [local_mocked_bindings()]. #' -#' These works by using some C code to temporarily modify the mocked function -#' _in place_. This is abusive of R's internals, which makes it dangerous, and -#' no longer recommended. -#' -#' @section 3rd edition: -#' `r lifecycle::badge("deprecated")` -#' -#' `with_mock()` and `local_mock()` are deprecated in the third edition. +#' These functions worked by using some C code to temporarily modify the mocked +#' function _in place_. This was an abuse of R's internals and it is no longer +#' permitted. #' #' @param ... named parameters redefine mocked functions, unnamed parameters #' will be evaluated after mocking the functions @@ -26,7 +21,7 @@ #' @return The result of the last unnamed parameter #' @export with_mock <- function(..., .env = topenv()) { - edition_deprecate(3, "with_mock()", "Please use with_mocked_bindings() instead") + lifecycle::deprecate_warn("3.3.0", "with_mock()", "with_mocked_bindings()") dots <- eval(substitute(alist(...))) mock_qual_names <- names(dots) @@ -61,7 +56,7 @@ with_mock <- function(..., .env = topenv()) { #' @export #' @rdname with_mock local_mock <- function(..., .env = topenv(), .local_envir = parent.frame()) { - edition_deprecate(3, "local_mock()", "Please use local_mocked_bindings() instead") + lifecycle::deprecate_warn("3.3.0", "local_mock()", "local_mocked_bindings()") mocks <- extract_mocks(list(...), .env = .env) on_exit <- bquote( diff --git a/cran-comments.md b/cran-comments.md index 5c3db95b3..f7fab3dab 100644 --- a/cran-comments.md +++ b/cran-comments.md @@ -1,3 +1,12 @@ +## Check notes + +There is one check note in this version: + + File ‘testthat/libs/testthat.so’: + Found non-API calls to R: ‘SET_BODY’, ‘SET_CLOENV’, ‘SET_FORMALS’ + +The plan is to remove these calls in the next release, but I wanted to deprecated the problematic functions `with_mock()` and `local_mock()` first so that users get a little warning. + ## revdepcheck results We checked all reverse dependencies, comparing R CMD check results across CRAN and dev versions of this package. Unfortunately something is up with our revdep test system and I failed to check ~1200 packages. I'm pretty confident these are bioconductor packages and unrelated to changes to testthat. diff --git a/man/with_mock.Rd b/man/with_mock.Rd index be3700a26..0ce31120d 100644 --- a/man/with_mock.Rd +++ b/man/with_mock.Rd @@ -24,20 +24,13 @@ For expert use only.} The result of the last unnamed parameter } \description{ -\ifelse{html}{\href{https://lifecycle.r-lib.org/articles/stages.html#superseded}{\figure{lifecycle-superseded.svg}{options: alt='[Superseded]'}}}{\strong{[Superseded]}} +\ifelse{html}{\href{https://lifecycle.r-lib.org/articles/stages.html#deprecated}{\figure{lifecycle-deprecated.svg}{options: alt='[Deprecated]'}}}{\strong{[Deprecated]}} -\code{with_mock()} and \code{local_mock()} are superseded in favour of +\code{with_mock()} and \code{local_mock()} are deprecated in favour of \code{\link[=with_mocked_bindings]{with_mocked_bindings()}} and \code{\link[=local_mocked_bindings]{local_mocked_bindings()}}. -These works by using some C code to temporarily modify the mocked function -\emph{in place}. This is abusive of R's internals, which makes it dangerous, and -no longer recommended. -} -\section{3rd edition}{ - -\ifelse{html}{\href{https://lifecycle.r-lib.org/articles/stages.html#deprecated}{\figure{lifecycle-deprecated.svg}{options: alt='[Deprecated]'}}}{\strong{[Deprecated]}} - -\code{with_mock()} and \code{local_mock()} are deprecated in the third edition. +These functions worked by using some C code to temporarily modify the mocked +function \emph{in place}. This was an abuse of R's internals and it is no longer +permitted. } - \keyword{internal} diff --git a/tests/testthat/_snaps/mock.md b/tests/testthat/_snaps/mock.md new file mode 100644 index 000000000..05f6e79af --- /dev/null +++ b/tests/testthat/_snaps/mock.md @@ -0,0 +1,18 @@ +# deprecated + + Code + local_mock() + Condition + Warning: + `local_mock()` was deprecated in testthat 3.3.0. + i Please use `local_mocked_bindings()` instead. + +--- + + Code + with_mock(is_testing = function() FALSE) + Condition + Warning: + `with_mock()` was deprecated in testthat 3.3.0. + i Please use `with_mocked_bindings()` instead. + diff --git a/tests/testthat/test-mock.R b/tests/testthat/test-mock.R index 8b229b5e6..dda947021 100644 --- a/tests/testthat/test-mock.R +++ b/tests/testthat/test-mock.R @@ -1,150 +1,4 @@ -test_that("deprecated in 3rd edition", { - expect_warning(local_mock(), "deprecated") - expect_warning(with_mock(is_testing = function() FALSE), "deprecated") -}) - -test_that("can change value of internal function", { - local_edition(2) - - with_mock( - test_mock_internal2 = function() 5, - expect_equal(test_mock_internal(), 5) - ) - - # and value is restored on error - expect_error( - with_mock( - test_mock_internal2 = function() 5, - stop("!") - ) - ) - expect_equal(test_mock_internal(), "y") -}) - - -test_that("mocks can access local variables", { - local_edition(2) - x <- 5 - - with_mock( - test_mock_internal2 = function() x, - expect_equal(test_mock_internal(), 5) - ) -}) - -test_that("non-empty mock with return value", { - local_edition(2) - expect_true(with_mock( - compare = function(x, y, ...) list(equal = TRUE, message = "TRUE"), - TRUE - )) -}) - -test_that("nested mock", { - local_edition(2) - with_mock( - all.equal = function(x, y, ...) TRUE, - { - with_mock( - expect_warning = expect_error, - { - expect_warning(stopifnot(!compare(3, "a")$equal)) - } - ) - }, - .env = asNamespace("base") - ) - expect_false(isTRUE(all.equal(3, 5))) - expect_warning(warning("test")) -}) - -test_that("can't mock non-existing", { - local_edition(2) - expect_error(with_mock(..bogus.. = identity, TRUE), "Function [.][.]bogus[.][.] not found in environment testthat") -}) - -test_that("can't mock non-function", { - local_edition(2) - expect_error(with_mock(pkg_and_name_rx = FALSE, TRUE), "Function pkg_and_name_rx not found in environment testthat") -}) - -test_that("empty or no-op mock", { - local_edition(2) - expect_warning( - expect_null(with_mock()), - "Not mocking anything. Please use named parameters to specify the functions you want to mock.", - fixed = TRUE - ) - expect_warning( - expect_true(with_mock(TRUE)), - "Not mocking anything. Please use named parameters to specify the functions you want to mock.", - fixed = TRUE - ) -}) - -test_that("visibility", { - local_edition(2) - expect_warning(expect_false(withVisible(with_mock())$visible)) - expect_true(withVisible(with_mock(compare = function() {}, TRUE))$visible) - expect_false(withVisible(with_mock(compare = function() {}, invisible(5)))$visible) -}) - -test_that("multiple return values", { - local_edition(2) - expect_true(with_mock(FALSE, TRUE, compare = function() {})) - expect_equal(with_mock(3, compare = function() {}, 5), 5) -}) - -test_that("can access variables defined in function", { - local_edition(2) - x <- 5 - expect_equal(with_mock(x, compare = function() {}), 5) -}) - -test_that("can mock if package is not loaded", { - local_edition(2) - if ("package:curl" %in% search()) { - skip("curl is loaded") - } - skip_if_not_installed("curl") - with_mock(`curl::curl` = identity, expect_identical(curl::curl, identity)) -}) - -test_that("changes to variables are preserved between calls and visible outside", { - local_edition(2) - x <- 1 - with_mock( - show_menu = function() {}, - x <- 3, - expect_equal(x, 3) - ) - expect_equal(x, 3) -}) - -test_that("mock extraction", { - local_edition(2) - expect_identical( - extract_mocks(list(compare = compare), .env = asNamespace("testthat"))$compare$name, - as.name("compare") - ) - expect_error( - extract_mocks(list(..bogus.. = identity), "testthat"), - "Function [.][.]bogus[.][.] not found in environment testthat" - ) - expect_equal( - length(extract_mocks(list(not = identity, show_menu = identity), "testthat")), - 2 - ) -}) -# local_mock -------------------------------------------------------------- - -test_that("local_mock operates locally", { - local_edition(2) - f <- function() { - local_mock(compare = function(x, y) FALSE) - compare(1, 1) - } - - expect_false(f()) - expect_equal(compare(1, 1), no_difference()) +test_that("deprecated", { + expect_snapshot(local_mock()) + expect_snapshot(with_mock(is_testing = function() FALSE)) }) From c843a3bfffadfb085b373ae79de6a61f7b267e55 Mon Sep 17 00:00:00 2001 From: Michael Chirico Date: Tue, 29 Oct 2024 14:42:13 -0700 Subject: [PATCH 17/36] Reinforce that skip is due to a package (#1959) --- NEWS.md | 1 + R/skip.R | 8 +++++++- tests/testthat/_snaps/skip.md | 2 +- 3 files changed, 9 insertions(+), 2 deletions(-) diff --git a/NEWS.md b/NEWS.md index 550de611e..ac2aff12f 100644 --- a/NEWS.md +++ b/NEWS.md @@ -1,5 +1,6 @@ # testthat (development version) +* `skip_if_not_installed()` produces a clearer message (@MichaelChirico, #1959). * `with_mock()` and `local_mock()` have been unconditionally deprecated as they will no longer work in future versions of R (#1999). * `expect_condition()` and friends now include the `class` of the expected condition in the failure mesage, if used (#1987). * `LANGUAGE` is now set to `"C"` in reprocucible environments (i.e. diff --git a/R/skip.R b/R/skip.R index 4d6e693b7..6dba4885b 100644 --- a/R/skip.R +++ b/R/skip.R @@ -100,8 +100,14 @@ skip_if <- function(condition, message = NULL) { #' @param minimum_version Minimum required version for the package #' @rdname skip skip_if_not_installed <- function(pkg, minimum_version = NULL) { + # most common case: it's not installed + tryCatch( + find.package(pkg), + error = function(e) skip(paste0("{", pkg, "} is not installed")) + ) + # rarer: it's installed, but fails to load if (!requireNamespace(pkg, quietly = TRUE)) { - skip(paste0(pkg, " cannot be loaded")) + skip(paste0("{", pkg, "} cannot be loaded")) } if (!is.null(minimum_version)) { diff --git a/tests/testthat/_snaps/skip.md b/tests/testthat/_snaps/skip.md index 85b627712..4756a3cbb 100644 --- a/tests/testthat/_snaps/skip.md +++ b/tests/testthat/_snaps/skip.md @@ -26,7 +26,7 @@ # skip_if_not_installed() works as expected - Reason: doesntexist cannot be loaded + Reason: {doesntexist} is not installed --- From 36287920ecdc24d16703a8add51cce0dd7b32309 Mon Sep 17 00:00:00 2001 From: Kevin Ushey Date: Tue, 29 Oct 2024 14:45:41 -0700 Subject: [PATCH 18/36] require non-empty strings for test description (#1981) --- NEWS.md | 1 + R/snapshot-reporter.R | 1 + tests/testthat/test-snapshot.R | 8 ++++++++ 3 files changed, 10 insertions(+) diff --git a/NEWS.md b/NEWS.md index ac2aff12f..5bb8c28db 100644 --- a/NEWS.md +++ b/NEWS.md @@ -1,5 +1,6 @@ # testthat (development version) +* `expect_snapshot()` now errors when called from a `test_that()` that has an empty description (@kevinushey, #1980). * `skip_if_not_installed()` produces a clearer message (@MichaelChirico, #1959). * `with_mock()` and `local_mock()` have been unconditionally deprecated as they will no longer work in future versions of R (#1999). * `expect_condition()` and friends now include the `class` of the expected condition in the failure mesage, if used (#1987). diff --git a/R/snapshot-reporter.R b/R/snapshot-reporter.R index f88040584..ebedcde65 100644 --- a/R/snapshot-reporter.R +++ b/R/snapshot-reporter.R @@ -46,6 +46,7 @@ SnapshotReporter <- R6::R6Class("SnapshotReporter", tolerance = testthat_tolerance(), variant = NULL, trace_env = NULL) { + check_string(self$test, allow_empty = FALSE) i <- self$new_snaps$append(self$test, variant, save(value)) old_raw <- self$old_snaps$get(self$test, variant, i) diff --git a/tests/testthat/test-snapshot.R b/tests/testthat/test-snapshot.R index ff15d1de4..5e514a112 100644 --- a/tests/testthat/test-snapshot.R +++ b/tests/testthat/test-snapshot.R @@ -167,3 +167,11 @@ test_that("hint is informative", { cat(snapshot_accept_hint("foo", "bar.R", reset_output = FALSE)) }) }) + +test_that("expect_snapshot requires a non-empty test label", { + + test_that("", { + expect_error(expect_snapshot(1 + 1)) + }) + +}) From dd39c654afcfff83494d0c6168b73514c18bf60e Mon Sep 17 00:00:00 2001 From: Leon Samson <42182207+LDSamson@users.noreply.github.com> Date: Tue, 29 Oct 2024 22:46:36 +0100 Subject: [PATCH 19/36] Remove linebreaks from test descriptions in snapshots; fixes #1900 (#1902) --- NEWS.md | 1 + R/snapshot-reporter.R | 2 +- 2 files changed, 2 insertions(+), 1 deletion(-) diff --git a/NEWS.md b/NEWS.md index 5bb8c28db..e833c445b 100644 --- a/NEWS.md +++ b/NEWS.md @@ -1,5 +1,6 @@ # testthat (development version) +* `expect_snapshot()` now strips line breaks in test descriptions (@LDSamson, #1900). * `expect_snapshot()` now errors when called from a `test_that()` that has an empty description (@kevinushey, #1980). * `skip_if_not_installed()` produces a clearer message (@MichaelChirico, #1959). * `with_mock()` and `local_mock()` have been unconditionally deprecated as they will no longer work in future versions of R (#1999). diff --git a/R/snapshot-reporter.R b/R/snapshot-reporter.R index ebedcde65..7f7989d6c 100644 --- a/R/snapshot-reporter.R +++ b/R/snapshot-reporter.R @@ -35,7 +35,7 @@ SnapshotReporter <- R6::R6Class("SnapshotReporter", }, start_test = function(context, test) { - self$test <- test + self$test <- gsub("\n", "", test) }, # Called by expectation From 8c2bd6efa9d338b9f340b8a108adb22e0b3c432b Mon Sep 17 00:00:00 2001 From: Hadley Wickham Date: Wed, 30 Oct 2024 10:47:12 -0500 Subject: [PATCH 20/36] Improve failure messages for `expect_visible()` and `expect_invisible()` (#2001) Fixes #1966 --- NEWS.md | 1 + R/expect-invisible.R | 4 ++-- tests/testthat/_snaps/expect-invisible.md | 8 ++++++++ tests/testthat/test-expect-invisible.R | 7 +++++++ 4 files changed, 18 insertions(+), 2 deletions(-) create mode 100644 tests/testthat/_snaps/expect-invisible.md diff --git a/NEWS.md b/NEWS.md index e833c445b..204416428 100644 --- a/NEWS.md +++ b/NEWS.md @@ -1,5 +1,6 @@ # testthat (development version) +* `expect_visible()` and `expect_invisible()` have improved failure messages (#1966). * `expect_snapshot()` now strips line breaks in test descriptions (@LDSamson, #1900). * `expect_snapshot()` now errors when called from a `test_that()` that has an empty description (@kevinushey, #1980). * `skip_if_not_installed()` produces a clearer message (@MichaelChirico, #1959). diff --git a/R/expect-invisible.R b/R/expect-invisible.R index 16306b5d9..4b2f576ff 100644 --- a/R/expect-invisible.R +++ b/R/expect-invisible.R @@ -26,7 +26,7 @@ expect_invisible <- function(call, label = NULL) { expect( identical(vis$visible, FALSE), - sprintf("%s does not return invisibly", lab) + sprintf("%s returns visibly, not invisibly.", lab) ) invisible(vis$value) } @@ -39,7 +39,7 @@ expect_visible <- function(call, label = NULL) { expect( identical(vis$visible, TRUE), - sprintf("%s does not invisibly", lab) + sprintf("%s returns invisibly, not visibly.", lab) ) invisible(vis$value) } diff --git a/tests/testthat/_snaps/expect-invisible.md b/tests/testthat/_snaps/expect-invisible.md new file mode 100644 index 000000000..bdd7b69fc --- /dev/null +++ b/tests/testthat/_snaps/expect-invisible.md @@ -0,0 +1,8 @@ +# generates useful failure messages + + invisible(1) returns invisibly, not visibly. + +--- + + 1 returns visibly, not invisibly. + diff --git a/tests/testthat/test-expect-invisible.R b/tests/testthat/test-expect-invisible.R index c9264a53b..5c105824d 100644 --- a/tests/testthat/test-expect-invisible.R +++ b/tests/testthat/test-expect-invisible.R @@ -6,6 +6,13 @@ test_that("basic principles of visibility hold", { expect_failure(expect_visible(x <- 1)) }) +test_that("generates useful failure messages", { + + expect_snapshot_failure(expect_visible(invisible(1))) + expect_snapshot_failure(expect_invisible(1)) + +}) + test_that("invisibly returns evaluated value", { out <- expect_invisible(expect_invisible(x <- 2 + 2)) expect_equal(out, 4) From f686b2d6dfff2d10f046a62c3ec2020b221c7045 Mon Sep 17 00:00:00 2001 From: Hadley Wickham Date: Mon, 4 Nov 2024 08:11:37 -0600 Subject: [PATCH 21/36] Update internal uses of deprecated mocking functions --- tests/testthat/test-examples.R | 2 +- tests/testthat/test-reporter-debug.R | 5 ++--- 2 files changed, 3 insertions(+), 4 deletions(-) diff --git a/tests/testthat/test-examples.R b/tests/testthat/test-examples.R index efafbf0f4..b584857c5 100644 --- a/tests/testthat/test-examples.R +++ b/tests/testthat/test-examples.R @@ -1,7 +1,7 @@ test_that("test_examples works with installed packages", { local_edition(2) - local_mock(test_rd = identity) + local_mocked_bindings(test_rd = identity) expect_true(length(test_examples()) > 1) }) diff --git a/tests/testthat/test-reporter-debug.R b/tests/testthat/test-reporter-debug.R index b043ebc68..34aab7200 100644 --- a/tests/testthat/test-reporter-debug.R +++ b/tests/testthat/test-reporter-debug.R @@ -1,7 +1,7 @@ test_that("produces consistent output", { withr::local_options(testthat.edition_ignore = TRUE) local_edition(2) - local_mock( + local_mocked_bindings( show_menu = function(choices, title = NULL) { cat(paste0(format(seq_along(choices)), ": ", choices, sep = "\n"), "\n", sep = "") 0L @@ -22,7 +22,7 @@ get_frame_from_debug_reporter <- function(choice, fun, envir = parent.frame()) { force(choice) test_debug_reporter_parent_frame <- NULL - with_mock( + with_mocked_bindings( show_menu = function(choices, title = NULL) { # if (choice > 0) print(choices) my_choice <- choice @@ -178,4 +178,3 @@ test_that("browser() is called for the correct frame for skips", { expect_equal(get_vars_from_debug_reporter(3, fun_3), "g") expect_equal(get_vars_from_debug_reporter(4, fun_3), character()) }) - From 8d6f3d50d1fcaacf5c00b9a926a72e26649388e7 Mon Sep 17 00:00:00 2001 From: Hadley Wickham Date: Mon, 4 Nov 2024 16:35:33 -0600 Subject: [PATCH 22/36] Make interactive snapshot output a bit more obvious (#2000) MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit Testing this change revealed a bug in `test_code()`: specifying the default reporter happened _after_ `local_test_context()` meaning that it failed to capture the actual user settings. I fixed this by now requiring a reporter (rather than a backup reporter). It also revealed a bug in the width computation for issue headings 😬 Fixes #1992 Co-authored-by: Davis Vaughan --- R/describe.R | 3 ++- R/reporter-progress.R | 4 +++- R/snapshot-file.R | 2 +- R/snapshot.R | 9 ++++++--- R/source.R | 2 +- R/test-example.R | 2 +- R/test-that.R | 8 +++++--- tests/testthat/test-snapshot-reporter.R | 4 ++-- 8 files changed, 21 insertions(+), 13 deletions(-) diff --git a/R/describe.R b/R/describe.R index 09a5e5e8d..94b662bf6 100644 --- a/R/describe.R +++ b/R/describe.R @@ -76,13 +76,14 @@ describe <- function(description, code) { } describe_it <- function(description, code, env = parent.frame()) { + reporter <- get_reporter() %||% local_interactive_reporter() local_test_context() test_code( description, code, env = env, - default_reporter = local_interactive_reporter(), + reporter = reporter, skip_on_empty = FALSE ) } diff --git a/R/reporter-progress.R b/R/reporter-progress.R index 33e01818b..c34ed1649 100644 --- a/R/reporter-progress.R +++ b/R/reporter-progress.R @@ -534,7 +534,9 @@ issue_header <- function(x, pad = FALSE) { issue_summary <- function(x, rule = FALSE) { header <- cli::style_bold(issue_header(x)) if (rule) { - header <- cli::rule(header, width = max(cli::ansi_nchar(header) + 6, 80)) + # Don't truncate long test names + width <- max(cli::ansi_nchar(header) + 6, getOption("width")) + header <- cli::rule(header, width = width) } paste0(header, "\n", format(x)) diff --git a/R/snapshot-file.R b/R/snapshot-file.R index 154302e68..52bea739f 100644 --- a/R/snapshot-file.R +++ b/R/snapshot-file.R @@ -101,7 +101,7 @@ expect_snapshot_file <- function(path, snapshotter <- get_snapshotter() if (is.null(snapshotter)) { - snapshot_not_available(paste0("New path: ", path)) + snapshot_not_available(path) return(invisible()) } diff --git a/R/snapshot.R b/R/snapshot.R index 168a9b822..94ccbd1ad 100644 --- a/R/snapshot.R +++ b/R/snapshot.R @@ -272,7 +272,7 @@ expect_snapshot_helper <- function(lab, val, snapshotter <- get_snapshotter() if (is.null(snapshotter)) { - snapshot_not_available(paste0("Current value:\n", save(val))) + snapshot_not_available(save(val)) return(invisible()) } @@ -323,11 +323,14 @@ snapshot_accept_hint <- function(variant, file, reset_output = TRUE) { } snapshot_not_available <- function(message) { + local_reporter_output() + + cat(cli::rule("Snapshot"), "\n", sep = "") cli::cli_inform(c( - "{.strong Can't compare snapshot to reference when testing interactively.}", - i = "Run {.run devtools::test()} or {.code testthat::test_file()} to see changes." + i = "Can't save or compare to reference when testing interactively." )) cat(message, "\n", sep = "") + cat(cli::rule(), "\n", sep = "") } local_snapshot_dir <- function(snap_names, .env = parent.frame()) { diff --git a/R/source.R b/R/source.R index 82cffcac5..14a44f4c0 100644 --- a/R/source.R +++ b/R/source.R @@ -44,7 +44,7 @@ source_file <- function(path, test = NULL, code = exprs, env = env, - default_reporter = StopReporter$new() + reporter = get_reporter() %||% StopReporter$new() )) } else { withCallingHandlers( diff --git a/R/test-example.R b/R/test-example.R index c4e20eb25..f8625bb71 100644 --- a/R/test-example.R +++ b/R/test-example.R @@ -65,7 +65,7 @@ test_example <- function(path, title = path) { test = title, code = parse(ex_path, encoding = "UTF-8"), env = env, - default_reporter = StopReporter$new(), + reporter = get_reporter() %||% StopReporter$new(), skip_on_empty = FALSE ) if (ok) succeed(path) diff --git a/R/test-that.R b/R/test-that.R index 090a9f5c7..8b3ab2fc7 100644 --- a/R/test-that.R +++ b/R/test-that.R @@ -46,21 +46,23 @@ test_that <- function(desc, code) { } } + # Must initialise interactive reporter before local_test_context() + reporter <- get_reporter() %||% local_interactive_reporter() local_test_context() + test_code( desc, code, env = parent.frame(), - default_reporter = local_interactive_reporter() + reporter = reporter ) } # Access error fields with `[[` rather than `$` because the # `$.Throwable` from the rJava package throws with unknown fields -test_code <- function(test, code, env, default_reporter, skip_on_empty = TRUE) { +test_code <- function(test, code, env, reporter, skip_on_empty = TRUE) { frame <- caller_env() - reporter <- get_reporter() %||% default_reporter if (!is.null(test)) { reporter$start_test(context = reporter$.context, test = test) diff --git a/tests/testthat/test-snapshot-reporter.R b/tests/testthat/test-snapshot-reporter.R index 57955686f..ecbfaca33 100644 --- a/tests/testthat/test-snapshot-reporter.R +++ b/tests/testthat/test-snapshot-reporter.R @@ -14,8 +14,8 @@ test_that("basic workflow", { snapper$start_file("snapshot-2") # output if not active (because test not set here) expect_snapshot_output("x") %>% - expect_message("Can't compare") %>% - expect_output("Current value:\n[1] \"x\"", fixed = TRUE) + expect_message("Can't save") %>% + expect_output("[1] \"x\"", fixed = TRUE) # warns on first creation snapper$start_file("snapshot-2", "test") From f5ba8a858e171b65f3d475ddc01c5ab7f1fa4e66 Mon Sep 17 00:00:00 2001 From: Hadley Wickham Date: Mon, 4 Nov 2024 17:34:40 -0600 Subject: [PATCH 23/36] Use latest waldo (#2009) Fixes #1955 --- DESCRIPTION | 2 +- NEWS.md | 1 + 2 files changed, 2 insertions(+), 1 deletion(-) diff --git a/DESCRIPTION b/DESCRIPTION index 6ecca9c0f..e3b13ebf4 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -34,7 +34,7 @@ Imports: R6 (>= 2.5.1), rlang (>= 1.1.1), utils, - waldo (>= 0.5.1), + waldo (>= 0.6.0), withr (>= 3.0.2) Suggests: covr, diff --git a/NEWS.md b/NEWS.md index 204416428..ecc0b345d 100644 --- a/NEWS.md +++ b/NEWS.md @@ -1,5 +1,6 @@ # testthat (development version) +* Require the latest version of waldo (0.6.0) in order to get the latest goodies (#1955). * `expect_visible()` and `expect_invisible()` have improved failure messages (#1966). * `expect_snapshot()` now strips line breaks in test descriptions (@LDSamson, #1900). * `expect_snapshot()` now errors when called from a `test_that()` that has an empty description (@kevinushey, #1980). From 3f70084bcdb374c94d7e98ba30aa4545d0bbb415 Mon Sep 17 00:00:00 2001 From: Hadley Wickham Date: Tue, 5 Nov 2024 07:21:11 -0600 Subject: [PATCH 24/36] Don't emit success if test doesn't succeed (#2010) Fixes #1997 --- NEWS.md | 1 + R/expect-no-condition.R | 6 ++++-- tests/testthat/test-expect-no-condition.R | 17 +++++++++++++++++ 3 files changed, 22 insertions(+), 2 deletions(-) diff --git a/NEWS.md b/NEWS.md index ecc0b345d..64ae36713 100644 --- a/NEWS.md +++ b/NEWS.md @@ -1,5 +1,6 @@ # testthat (development version) +* `expect_no_*()` expectations no longer incorrectly emit a passing test result if they in fact fail (#1997). * Require the latest version of waldo (0.6.0) in order to get the latest goodies (#1955). * `expect_visible()` and `expect_invisible()` have improved failure messages (#1966). * `expect_snapshot()` now strips line breaks in test descriptions (@LDSamson, #1900). diff --git a/R/expect-no-condition.R b/R/expect-no-condition.R index f3a2318ca..ac79e922c 100644 --- a/R/expect-no-condition.R +++ b/R/expect-no-condition.R @@ -96,7 +96,10 @@ expect_no_ <- function(base_class, capture <- function(code) { try_fetch( - code, + { + code + succeed() + }, !!base_class := function(cnd) { if (!matcher(cnd)) { return(zap()) @@ -119,7 +122,6 @@ expect_no_ <- function(base_class, } act <- quasi_capture(enquo(object), NULL, capture) - succeed() invisible(act$val) } diff --git a/tests/testthat/test-expect-no-condition.R b/tests/testthat/test-expect-no-condition.R index 059ba468d..f5c2c0d43 100644 --- a/tests/testthat/test-expect-no-condition.R +++ b/tests/testthat/test-expect-no-condition.R @@ -13,6 +13,23 @@ test_that("expect_no_* conditions behave as expected", { }) +test_that("expect_no_* don't emit success when they fail", { + + catch_cnds <- function(code) { + cnds <- list() + + withCallingHandlers(code, condition = function(cnd) { + cnds[[length(cnds) + 1]] <<- cnd + invokeRestart("continue_test") + }) + cnds + } + + cnds <- catch_cnds(expect_no_error(stop("!"))) + expect_length(cnds, 1) + expect_s3_class(cnds[[1]], "expectation_failure") +}) + test_that("unmatched conditions bubble up", { expect_error(expect_no_error(abort("foo"), message = "bar"), "foo") expect_warning(expect_no_warning(warn("foo"), message = "bar"), "foo") From 477f43c345aae5de7d1ec4801018b952869f5be3 Mon Sep 17 00:00:00 2001 From: Hadley Wickham Date: Tue, 5 Nov 2024 08:42:44 -0600 Subject: [PATCH 25/36] Better way to ignore attributes when comparing TRUE/FALSE (#2011) Fixes #1996 --- NEWS.md | 1 + R/expect-constant.R | 21 ++++++++++++--------- man/logical-expectations.Rd | 3 +-- tests/testthat/_snaps/expect-constant.md | 7 +++++++ tests/testthat/_snaps/reporter-debug.md | 8 ++++---- tests/testthat/test-expect-constant.R | 6 +++++- 6 files changed, 30 insertions(+), 16 deletions(-) diff --git a/NEWS.md b/NEWS.md index 64ae36713..1f595bb41 100644 --- a/NEWS.md +++ b/NEWS.md @@ -1,5 +1,6 @@ # testthat (development version) +* `expect_true()` and `expect_false()` give better errors if `actual` isn't a vector (#1996). * `expect_no_*()` expectations no longer incorrectly emit a passing test result if they in fact fail (#1997). * Require the latest version of waldo (0.6.0) in order to get the latest goodies (#1955). * `expect_visible()` and `expect_invisible()` have improved failure messages (#1966). diff --git a/R/expect-constant.R b/R/expect-constant.R index 72e267e96..d391ed00c 100644 --- a/R/expect-constant.R +++ b/R/expect-constant.R @@ -1,5 +1,6 @@ #' Does code return `TRUE` or `FALSE`? #' +#' @description #' These are fall-back expectations that you can use when none of the other #' more specific expectations apply. The disadvantage is that you may get #' a less informative error message. @@ -30,18 +31,14 @@ NULL #' @rdname logical-expectations expect_true <- function(object, info = NULL, label = NULL) { act <- quasi_label(enquo(object), label, arg = "object") - act$val <- as.vector(act$val) - - expect_waldo_constant(act, TRUE, info = info) + expect_waldo_constant(act, TRUE, info = info, ignore_attr = TRUE) } #' @export #' @rdname logical-expectations expect_false <- function(object, info = NULL, label = NULL) { act <- quasi_label(enquo(object), label, arg = "object") - act$val <- as.vector(act$val) - - expect_waldo_constant(act, FALSE, info = info) + expect_waldo_constant(act, FALSE, info = info, ignore_attr = TRUE) } #' Does code return `NULL`? @@ -66,11 +63,17 @@ expect_null <- function(object, info = NULL, label = NULL) { # helpers ----------------------------------------------------------------- -expect_waldo_constant <- function(act, constant, info) { - comp <- waldo_compare(act$val, constant, x_arg = "actual", y_arg = "expected") +expect_waldo_constant <- function(act, constant, info, ...) { + comp <- waldo_compare( + act$val, + constant, + x_arg = "actual", + y_arg = "expected", + ... + ) expect( - identical(act$val, constant), + length(comp) == 0, sprintf( "%s is not %s\n\n%s", act$lab, deparse(constant), diff --git a/man/logical-expectations.Rd b/man/logical-expectations.Rd index da38c3bde..7d436b5ec 100644 --- a/man/logical-expectations.Rd +++ b/man/logical-expectations.Rd @@ -26,8 +26,7 @@ alternatives in \link{quasi_label}.} These are fall-back expectations that you can use when none of the other more specific expectations apply. The disadvantage is that you may get a less informative error message. -} -\details{ + Attributes are ignored. } \examples{ diff --git a/tests/testthat/_snaps/expect-constant.md b/tests/testthat/_snaps/expect-constant.md index 1b59b90d7..6d9ae9d4c 100644 --- a/tests/testthat/_snaps/expect-constant.md +++ b/tests/testthat/_snaps/expect-constant.md @@ -12,6 +12,13 @@ `actual`: TRUE `expected`: FALSE +# can compare non-vectors + + quote(x) is not TRUE + + `actual` is a symbol + `expected` is a logical vector (TRUE) + # expect_null works 1L is not NULL diff --git a/tests/testthat/_snaps/reporter-debug.md b/tests/testthat/_snaps/reporter-debug.md index d57076d42..532957d8e 100644 --- a/tests/testthat/_snaps/reporter-debug.md +++ b/tests/testthat/_snaps/reporter-debug.md @@ -1,13 +1,13 @@ # produces consistent output 1: expect_true(FALSE) - 2: expect_waldo_constant(act, TRUE, info = info) - 3: expect(identical(act$val, constant), sprintf("%s is not %s\n\n%s", act$lab, + 2: expect_waldo_constant(act, TRUE, info = info, ignore_attr = TRUE) + 3: expect(length(comp) == 0, sprintf("%s is not %s\n\n%s", act$lab, deparse(co 1: f() 2: expect_true(FALSE) - 3: expect_waldo_constant(act, TRUE, info = info) - 4: expect(identical(act$val, constant), sprintf("%s is not %s\n\n%s", act$lab, + 3: expect_waldo_constant(act, TRUE, info = info, ignore_attr = TRUE) + 4: expect(length(comp) == 0, sprintf("%s is not %s\n\n%s", act$lab, deparse(co 1: stop("stop") diff --git a/tests/testthat/test-expect-constant.R b/tests/testthat/test-expect-constant.R index b5cadb766..1c7cada82 100644 --- a/tests/testthat/test-expect-constant.R +++ b/tests/testthat/test-expect-constant.R @@ -13,6 +13,11 @@ test_that("logical tests ignore attributes", { expect_success(expect_false(c(a = FALSE))) }) +test_that("can compare non-vectors", { + local_output_override() + expect_snapshot_failure(expect_true(quote(x))) +}) + test_that("additional info returned in message", { expect_failure(expect_true(FALSE, "NOPE"), "\nNOPE") expect_failure(expect_false(TRUE, "YUP"), "\nYUP") @@ -25,4 +30,3 @@ test_that("expect_null works", { expect_snapshot_failure(expect_null(1L)) expect_snapshot_failure(expect_null(environment())) }) - From edee55a56b03fc51b2298519b483d5aa2941e318 Mon Sep 17 00:00:00 2001 From: Hadley Wickham Date: Tue, 5 Nov 2024 17:00:19 -0600 Subject: [PATCH 26/36] Improve `expect_setequal()` message and implementation (#2015) Fixes #1962 --- NEWS.md | 1 + R/expect-setequal.R | 14 +++++++------- tests/testthat/_snaps/expect-setequal.md | 17 ++++++++++++----- tests/testthat/test-expect-setequal.R | 3 ++- 4 files changed, 22 insertions(+), 13 deletions(-) diff --git a/NEWS.md b/NEWS.md index 1f595bb41..fa4c464cc 100644 --- a/NEWS.md +++ b/NEWS.md @@ -1,5 +1,6 @@ # testthat (development version) +* `expect_setequal()` correctly identifies what is missing where (#1962). * `expect_true()` and `expect_false()` give better errors if `actual` isn't a vector (#1996). * `expect_no_*()` expectations no longer incorrectly emit a passing test result if they in fact fail (#1997). * Require the latest version of waldo (0.6.0) in order to get the latest goodies (#1955). diff --git a/R/expect-setequal.R b/R/expect-setequal.R index d710a1ac7..cfca84654 100644 --- a/R/expect-setequal.R +++ b/R/expect-setequal.R @@ -35,16 +35,16 @@ expect_setequal <- function(object, expected) { warn("expect_setequal() ignores names") } - act_miss <- !act$val %in% exp$val - exp_miss <- !exp$val %in% act$val + act_miss <- setdiff(act$val, exp$val) + exp_miss <- setdiff(exp$val, act$val) - if (any(exp_miss) || any(act_miss)) { + if (length(exp_miss) || length(act_miss)) { fail(paste0( act$lab, " (`actual`) and ", exp$lab, " (`expected`) don't have the same values.\n", - if (any(act_miss)) - paste0("* Only in `expected`: ", values(act$val[act_miss]), "\n"), - if (any(exp_miss)) - paste0("* Only in `actual`: ", values(exp$val[exp_miss]), "\n") + if (length(act_miss)) + paste0("* Only in `actual`: ", values(act_miss), "\n"), + if (length(exp_miss)) + paste0("* Only in `expected`: ", values(exp_miss), "\n") )) } else { succeed() diff --git a/tests/testthat/_snaps/expect-setequal.md b/tests/testthat/_snaps/expect-setequal.md index 1225d9914..3ea8247ad 100644 --- a/tests/testthat/_snaps/expect-setequal.md +++ b/tests/testthat/_snaps/expect-setequal.md @@ -1,26 +1,33 @@ # useful message on failure + "actual" (`actual`) and "expected" (`expected`) don't have the same values. + * Only in `actual`: "actual" + * Only in `expected`: "expected" + + +--- + 1:2 (`actual`) and 2 (`expected`) don't have the same values. - * Only in `expected`: 1 + * Only in `actual`: 1 --- 2 (`actual`) and 2:3 (`expected`) don't have the same values. - * Only in `actual`: 3 + * Only in `expected`: 3 --- 1:2 (`actual`) and 2:3 (`expected`) don't have the same values. - * Only in `expected`: 1 - * Only in `actual`: 3 + * Only in `actual`: 1 + * Only in `expected`: 3 # truncates long vectors 1:2 (`actual`) and 1:50 (`expected`) don't have the same values. - * Only in `actual`: 3, 4, 5, 6, 7, 8, 9, 10, 11, ... + * Only in `expected`: 3, 4, 5, 6, 7, 8, 9, 10, 11, ... # expect_contains() gives useful message on failure diff --git a/tests/testthat/test-expect-setequal.R b/tests/testthat/test-expect-setequal.R index b4de30800..6966822ec 100644 --- a/tests/testthat/test-expect-setequal.R +++ b/tests/testthat/test-expect-setequal.R @@ -24,6 +24,8 @@ test_that("error for non-vectors", { }) test_that("useful message on failure", { + expect_snapshot_failure(expect_setequal("actual", "expected")) + expect_snapshot_failure(expect_setequal(1:2, 2)) expect_snapshot_failure(expect_setequal(2, 2:3)) expect_snapshot_failure(expect_setequal(1:2, 2:3)) @@ -112,4 +114,3 @@ test_that("expect_in() gives useful message on failure", { expect_snapshot_failure(expect_in(x1, x2)) expect_snapshot_failure(expect_in(x1, x3)) }) - From 6ba4397f440014d3ee9a24441e2a913c2d06e8fe Mon Sep 17 00:00:00 2001 From: Hadley Wickham Date: Wed, 6 Nov 2024 09:42:38 -0600 Subject: [PATCH 27/36] Collect more reliable trace_env (#2012) And create more helpers for testing various more complicated success and failure modes. Fixes #1994 --------- Co-authored-by: Davis Vaughan --- NAMESPACE | 3 + NEWS.md | 2 + R/expect-condition.R | 12 ++-- R/expect-no-condition.R | 10 +-- R/expect-self-test.R | 83 +++++++++++++++++------ man/expect_success.Rd | 21 +++++- tests/testthat/test-expect-condition.R | 6 ++ tests/testthat/test-expect-no-condition.R | 19 ++---- tests/testthat/test-expect-self-test.R | 16 +++++ 9 files changed, 124 insertions(+), 48 deletions(-) diff --git a/NAMESPACE b/NAMESPACE index e13d30231..deb5f2010 100644 --- a/NAMESPACE +++ b/NAMESPACE @@ -106,8 +106,10 @@ export(expect_more_than) export(expect_named) export(expect_no_condition) export(expect_no_error) +export(expect_no_failure) export(expect_no_match) export(expect_no_message) +export(expect_no_success) export(expect_no_warning) export(expect_null) export(expect_output) @@ -119,6 +121,7 @@ export(expect_setequal) export(expect_silent) export(expect_snapshot) export(expect_snapshot_error) +export(expect_snapshot_failure) export(expect_snapshot_file) export(expect_snapshot_output) export(expect_snapshot_value) diff --git a/NEWS.md b/NEWS.md index fa4c464cc..c1877aff1 100644 --- a/NEWS.md +++ b/NEWS.md @@ -1,5 +1,7 @@ # testthat (development version) +* New `expect_no_failure()`, `expect_no_success()` and `expect_snapshot_failure()` provide more options for testing expectations. +* `expect_error()` and friends no longer give an uninformative error if they fail inside a magrittr pipe (#1994). * `expect_setequal()` correctly identifies what is missing where (#1962). * `expect_true()` and `expect_false()` give better errors if `actual` isn't a vector (#1996). * `expect_no_*()` expectations no longer incorrectly emit a passing test result if they in fact fail (#1997). diff --git a/R/expect-condition.R b/R/expect-condition.R index 6f299cc59..ce5c1d4a6 100644 --- a/R/expect-condition.R +++ b/R/expect-condition.R @@ -163,8 +163,7 @@ expect_warning <- function(object, ..., inherit = inherit, info = info, - label = label, - trace_env = caller_env() + label = label ) } else { act <- quasi_capture(enquo(object), label, capture_warnings, ignore_deprecation = identical(regexp, NA)) @@ -196,8 +195,7 @@ expect_message <- function(object, ..., inherit = inherit, info = info, - label = label, - trace_env = caller_env() + label = label ) } else { act <- quasi_capture(enquo(object), label, capture_messages) @@ -225,8 +223,7 @@ expect_condition <- function(object, ..., inherit = inherit, info = info, - label = label, - trace_env = caller_env() + label = label ) } else { @@ -256,6 +253,7 @@ expect_condition_matching <- function(base_class, label = NULL, trace_env = caller_env(), error_call = caller_env()) { + check_dots_used(error = function(cnd) { warn(conditionMessage(cnd), call = error_call) }) @@ -267,7 +265,7 @@ expect_condition_matching <- function(base_class, ..., inherit = inherit, ignore_deprecation = base_class == "warning" && identical(regexp, NA), - error_call = trace_env + error_call = error_call ) act <- quasi_capture( diff --git a/R/expect-no-condition.R b/R/expect-no-condition.R index ac79e922c..a3f8b40d9 100644 --- a/R/expect-no-condition.R +++ b/R/expect-no-condition.R @@ -82,10 +82,10 @@ expect_no_condition <- function(object, expect_no_ <- function(base_class, - object, - regexp = NULL, - class = NULL, - error_call = caller_env()) { + object, + regexp = NULL, + class = NULL, + trace_env = caller_env()) { matcher <- cnd_matcher( base_class, @@ -116,7 +116,7 @@ expect_no_ <- function(base_class, indent_lines(rlang::cnd_message(cnd)) ) message <- format_error_bullets(c(expected, i = actual)) - fail(message, trace_env = error_call) + fail(message, trace_env = trace_env) } ) } diff --git a/R/expect-self-test.R b/R/expect-self-test.R index 112018800..6ff00d5a4 100644 --- a/R/expect-self-test.R +++ b/R/expect-self-test.R @@ -1,23 +1,56 @@ +capture_failure <- new_capture("expectation_failure") +capture_success <- function(expr) { + cnd <- NULL + + withCallingHandlers( + expr, + expectation_failure = function(cnd) { + invokeRestart("continue_test") + }, + expectation_success = function(cnd) { + cnd <<- cnd + } + ) + cnd +} + +new_capture("expectation_success") + #' Tools for testing expectations #' -#' Use these expectations to test other expectations. +#' @description +#' * `expect_sucess()` and `expect_failure()` check that there's at least +#' one success or failure respectively. +#' * `expect_snapshot_failure()` records the failure message so that you can +#' manually check that it is informative. +#' * `expect_no_success()` and `expect_no_failure()` check that are no +#' successes or failures. +#' #' Use `show_failure()` in examples to print the failure message without #' throwing an error. #' -#' @param expr Expression that evaluates a single expectation. +#' @param expr Code to evalute #' @param message Check that the failure message matches this regexp. #' @param ... Other arguments passed on to [expect_match()]. #' @export expect_success <- function(expr) { - exp <- capture_expectation(expr) + exp <- capture_success(expr) if (is.null(exp)) { - fail("no expectation used.") - } else if (!expectation_success(exp)) { - fail(paste0( - "Expectation did not succeed:\n", - exp$message - )) + fail("Expectation did not succeed") + } else { + succeed() + } + invisible(NULL) +} + +#' @export +#' @rdname expect_success +expect_no_success <- function(expr) { + exp <- capture_success(expr) + + if (!is.null(exp)) { + fail("Expectation succeeded") } else { succeed() } @@ -27,19 +60,31 @@ expect_success <- function(expr) { #' @export #' @rdname expect_success expect_failure <- function(expr, message = NULL, ...) { - exp <- capture_expectation(expr) + exp <- capture_failure(expr) if (is.null(exp)) { - fail("No expectation used") - return() - } - if (!expectation_failure(exp)) { fail("Expectation did not fail") - return() + } else if (!is.null(message)) { + expect_match(exp$message, message, ...) + } else { + succeed() } + invisible(NULL) +} - if (!is.null(message)) { - expect_match(exp$message, message, ...) +#' @export +#' @rdname expect_success +expect_snapshot_failure <- function(expr) { + expect_snapshot_error(expr, "expectation_failure") +} + +#' @export +#' @rdname expect_success +expect_no_failure <- function(expr) { + exp <- capture_failure(expr) + + if (!is.null(exp)) { + fail("Expectation failed") } else { succeed() } @@ -67,10 +112,6 @@ show_failure <- function(expr) { invisible() } -expect_snapshot_failure <- function(x) { - expect_snapshot_error(x, "expectation_failure") -} - expect_snapshot_reporter <- function(reporter, paths = test_path("reporters/tests.R")) { local_options(rlang_trace_format_srcrefs = FALSE) local_rng_version("3.3") diff --git a/man/expect_success.Rd b/man/expect_success.Rd index e4d6304fa..b533e0239 100644 --- a/man/expect_success.Rd +++ b/man/expect_success.Rd @@ -2,25 +2,42 @@ % Please edit documentation in R/expect-self-test.R \name{expect_success} \alias{expect_success} +\alias{expect_no_success} \alias{expect_failure} +\alias{expect_snapshot_failure} +\alias{expect_no_failure} \alias{show_failure} \title{Tools for testing expectations} \usage{ expect_success(expr) +expect_no_success(expr) + expect_failure(expr, message = NULL, ...) +expect_snapshot_failure(expr) + +expect_no_failure(expr) + show_failure(expr) } \arguments{ -\item{expr}{Expression that evaluates a single expectation.} +\item{expr}{Code to evalute} \item{message}{Check that the failure message matches this regexp.} \item{...}{Other arguments passed on to \code{\link[=expect_match]{expect_match()}}.} } \description{ -Use these expectations to test other expectations. +\itemize{ +\item \code{expect_sucess()} and \code{expect_failure()} check that there's at least +one success or failure respectively. +\item \code{expect_snapshot_failure()} records the failure message so that you can +manually check that it is informative. +\item \code{expect_no_success()} and \code{expect_no_failure()} check that are no +successes or failures. +} + Use \code{show_failure()} in examples to print the failure message without throwing an error. } diff --git a/tests/testthat/test-expect-condition.R b/tests/testthat/test-expect-condition.R index d5cff5b02..4ee1a9234 100644 --- a/tests/testthat/test-expect-condition.R +++ b/tests/testthat/test-expect-condition.R @@ -76,6 +76,12 @@ test_that("can capture Throwable conditions from rJava", { expect_error(throw("foo"), "foo", class = "Throwable") }) +test_that("capture correct trace_env (#1994)", { + # This should fail, not error + expect_failure(expect_error(stop("oops")) %>% expect_warning()) + expect_failure(expect_warning(expect_error(stop("oops")))) +}) + # expect_warning() ---------------------------------------------------------- test_that("warnings are converted to errors when options('warn') >= 2", { diff --git a/tests/testthat/test-expect-no-condition.R b/tests/testthat/test-expect-no-condition.R index f5c2c0d43..a52649abc 100644 --- a/tests/testthat/test-expect-no-condition.R +++ b/tests/testthat/test-expect-no-condition.R @@ -14,20 +14,13 @@ test_that("expect_no_* conditions behave as expected", { }) test_that("expect_no_* don't emit success when they fail", { + expect_no_success(expect_no_error(stop("!"))) +}) - catch_cnds <- function(code) { - cnds <- list() - - withCallingHandlers(code, condition = function(cnd) { - cnds[[length(cnds) + 1]] <<- cnd - invokeRestart("continue_test") - }) - cnds - } - - cnds <- catch_cnds(expect_no_error(stop("!"))) - expect_length(cnds, 1) - expect_s3_class(cnds[[1]], "expectation_failure") +test_that("capture correct trace_env (#1994)", { + # This should fail, not error + expect_failure(expect_message({message("a"); warn("b")}) %>% expect_no_warning()) + expect_failure(expect_no_message({message("a"); warn("b")}) %>% expect_warning()) }) test_that("unmatched conditions bubble up", { diff --git a/tests/testthat/test-expect-self-test.R b/tests/testthat/test-expect-self-test.R index 20b2b0f12..305bb54c6 100644 --- a/tests/testthat/test-expect-self-test.R +++ b/tests/testthat/test-expect-self-test.R @@ -27,3 +27,19 @@ test_that("show_failure", { expect_null(show_failure(NULL)) expect_output(show_failure(expect_true(FALSE)), "FALSE is not TRUE") }) + +test_that("can test for presence and absense of failure", { + expect_success(expect_failure(fail())) + expect_success(expect_no_failure(succeed())) + + expect_failure(expect_failure(succeed())) + expect_failure(expect_no_failure(fail())) +}) + +test_that("can test for presence and absense of success", { + expect_success(expect_success(succeed())) + expect_success(expect_no_success(fail())) + + expect_failure(expect_success(fail())) + expect_failure(expect_no_success(succeed())) +}) From 5a8200a001dc9329c507a6913a83151d8c1c6fac Mon Sep 17 00:00:00 2001 From: Hadley Wickham Date: Wed, 6 Nov 2024 10:01:19 -0600 Subject: [PATCH 28/36] Improve ... checking logic for 3e `expect_error()` (and friends) (#2014) Fixes #1932 --- NEWS.md | 1 + R/expect-condition.R | 24 +++++++++++++++++------ tests/testthat/_snaps/expect-condition.md | 16 +++++++++------ tests/testthat/test-expect-condition.R | 7 +++++-- 4 files changed, 34 insertions(+), 14 deletions(-) diff --git a/NEWS.md b/NEWS.md index c1877aff1..c9028b2b7 100644 --- a/NEWS.md +++ b/NEWS.md @@ -1,5 +1,6 @@ # testthat (development version) +* `expect_error()` and friends now error if you supply `...` but not `pattern` (#1932). * New `expect_no_failure()`, `expect_no_success()` and `expect_snapshot_failure()` provide more options for testing expectations. * `expect_error()` and friends no longer give an uninformative error if they fail inside a magrittr pipe (#1994). * `expect_setequal()` correctly identifies what is missing where (#1962). diff --git a/R/expect-condition.R b/R/expect-condition.R index ce5c1d4a6..f032b5573 100644 --- a/R/expect-condition.R +++ b/R/expect-condition.R @@ -253,11 +253,6 @@ expect_condition_matching <- function(base_class, label = NULL, trace_env = caller_env(), error_call = caller_env()) { - - check_dots_used(error = function(cnd) { - warn(conditionMessage(cnd), call = error_call) - }) - matcher <- cnd_matcher( base_class, class, @@ -299,6 +294,13 @@ cnd_matcher <- function(base_class, check_string(class, allow_null = TRUE, call = error_call) check_string(pattern, allow_null = TRUE, allow_na = TRUE, call = error_call) + if (is.null(pattern) && dots_n(...) > 0) { + cli::cli_abort( + "Can't specify {.arg ...} without {.arg pattern}.", + call = error_call + ) + } + function(cnd) { if (!inherit) { cnd$parent <- NULL @@ -316,7 +318,17 @@ cnd_matcher <- function(base_class, return(FALSE) } if (!is.null(pattern) && !isNA(pattern)) { - grepl(pattern, conditionMessage(x), ...) + withCallingHandlers( + grepl(pattern, conditionMessage(x), ...), + error = function(e) { + cli::cli_abort( + "Failed to compare {base_class} to {.arg pattern}.", + parent = e, + call = error_call + ) + } + ) + } else { TRUE } diff --git a/tests/testthat/_snaps/expect-condition.md b/tests/testthat/_snaps/expect-condition.md index 7afc7df7d..c46f356ac 100644 --- a/tests/testthat/_snaps/expect-condition.md +++ b/tests/testthat/_snaps/expect-condition.md @@ -29,14 +29,18 @@ `f1()` did not throw a condition with class . -# unused arguments generate a warning +# unused arguments generate an error Code expect_condition(stop("Hi!"), foo = "bar") Condition - Warning in `expect_condition()`: - Arguments in `...` must be used. - x Problematic argument: - * foo = "bar" - i Did you misspell an argument name? + Error in `expect_condition()`: + ! Can't specify `...` without `pattern`. + Code + expect_condition(stop("Hi!"), "x", foo = "bar") + Condition + Error in `expect_condition()`: + ! Failed to compare condition to `pattern`. + Caused by error in `grepl()`: + ! unused argument (foo = "bar") diff --git a/tests/testthat/test-expect-condition.R b/tests/testthat/test-expect-condition.R index 4ee1a9234..33e3d1711 100644 --- a/tests/testthat/test-expect-condition.R +++ b/tests/testthat/test-expect-condition.R @@ -223,8 +223,11 @@ test_that("can match parent conditions (#1493)", { expect_error(expect_error(f(), "Parent message.", inherit = FALSE)) }) -test_that("unused arguments generate a warning", { - expect_snapshot(expect_condition(stop("Hi!"), foo = "bar")) +test_that("unused arguments generate an error", { + expect_snapshot(error = TRUE, { + expect_condition(stop("Hi!"), foo = "bar") + expect_condition(stop("Hi!"), "x", foo = "bar") + }) }) From fc0025c6f306823f7edf63e9797c64e085750e56 Mon Sep 17 00:00:00 2001 From: Hadley Wickham Date: Wed, 6 Nov 2024 10:19:59 -0600 Subject: [PATCH 29/36] Implement `expect_S7_class()` (#2017) Fixes #1580. Closes #2016. --- DESCRIPTION | 1 + NAMESPACE | 1 + NEWS.md | 1 + R/expect-inheritance.R | 29 +++++++++++++++++++++ man/inheritance-expectations.Rd | 5 ++++ tests/testthat/_snaps/expect-inheritance.md | 16 ++++++++++++ tests/testthat/test-expect-inheritance.R | 18 ++++++++++++- 7 files changed, 70 insertions(+), 1 deletion(-) diff --git a/DESCRIPTION b/DESCRIPTION index e3b13ebf4..4b5482089 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -43,6 +43,7 @@ Suggests: knitr, rmarkdown, rstudioapi, + S7, shiny, usethis, vctrs (>= 0.1.0), diff --git a/NAMESPACE b/NAMESPACE index deb5f2010..8f0286c3b 100644 --- a/NAMESPACE +++ b/NAMESPACE @@ -117,6 +117,7 @@ export(expect_output_file) export(expect_reference) export(expect_s3_class) export(expect_s4_class) +export(expect_s7_class) export(expect_setequal) export(expect_silent) export(expect_snapshot) diff --git a/NEWS.md b/NEWS.md index c9028b2b7..44e957b05 100644 --- a/NEWS.md +++ b/NEWS.md @@ -1,5 +1,6 @@ # testthat (development version) +* New `expect_s7_class()` for testing if an object is an S7 class (#1580). * `expect_error()` and friends now error if you supply `...` but not `pattern` (#1932). * New `expect_no_failure()`, `expect_no_success()` and `expect_snapshot_failure()` provide more options for testing expectations. * `expect_error()` and friends no longer give an uninformative error if they fail inside a magrittr pipe (#1994). diff --git a/R/expect-inheritance.R b/R/expect-inheritance.R index 2280e89cc..10677a556 100644 --- a/R/expect-inheritance.R +++ b/R/expect-inheritance.R @@ -12,6 +12,8 @@ #' * `expect_s4_class(x, class)` checks that `x` is an S4 object that #' [is()] `class`. #' * `expect_s4_class(x, NA)` checks that `x` isn't an S4 object. +#' * `expect_s7_class(x, Class)` checks that `x` is an S7 object that +#' [S7::S7_inherits()] from `Class` #' #' See [expect_vector()] for testing properties of objects created by vctrs. #' @@ -92,6 +94,33 @@ expect_s3_class <- function(object, class, exact = FALSE) { invisible(act$val) } +#' @export +#' @rdname inheritance-expectations +expect_s7_class <- function(object, class) { + check_installed("S7") + if (!inherits(class, "S7_class")) { + stop_input_type(class, "an S7 class object") + } + + act <- quasi_label(enquo(object), arg = "object") + + if (!S7::S7_inherits(object)) { + fail(sprintf("%s is not an S7 object", act$lab)) + } else { + expect( + S7::S7_inherits(object, class), + sprintf( + "%s inherits from %s not <%s>.", + act$lab, + paste0("<", setdiff(base::class(object), "S7_object"), ">", collapse = "/"), + attr(class, "name", TRUE) + ) + ) + } + + invisible(act$val) +} + #' @export #' @rdname inheritance-expectations expect_s4_class <- function(object, class) { diff --git a/man/inheritance-expectations.Rd b/man/inheritance-expectations.Rd index 1b2191620..e43b0b89e 100644 --- a/man/inheritance-expectations.Rd +++ b/man/inheritance-expectations.Rd @@ -4,6 +4,7 @@ \alias{inheritance-expectations} \alias{expect_type} \alias{expect_s3_class} +\alias{expect_s7_class} \alias{expect_s4_class} \title{Does code return an object inheriting from the expected base type, S3 class, or S4 class?} @@ -12,6 +13,8 @@ expect_type(object, type) expect_s3_class(object, class, exact = FALSE) +expect_s7_class(object, class) + expect_s4_class(object, class) } \arguments{ @@ -41,6 +44,8 @@ the vocabulary used here. \item \code{expect_s4_class(x, class)} checks that \code{x} is an S4 object that \code{\link[=is]{is()}} \code{class}. \item \code{expect_s4_class(x, NA)} checks that \code{x} isn't an S4 object. +\item \code{expect_s7_class(x, Class)} checks that \code{x} is an S7 object that +\code{\link[S7:S7_inherits]{S7::S7_inherits()}} from \code{Class} } See \code{\link[=expect_vector]{expect_vector()}} for testing properties of objects created by vctrs. diff --git a/tests/testthat/_snaps/expect-inheritance.md b/tests/testthat/_snaps/expect-inheritance.md index 6bcdd9f68..44ae80a40 100644 --- a/tests/testthat/_snaps/expect-inheritance.md +++ b/tests/testthat/_snaps/expect-inheritance.md @@ -18,3 +18,19 @@ `x` inherits from 'a'/'b' not 'c'/'d'. +# checks its inputs + + Code + expect_s7_class(1, 1) + Condition + Error in `expect_s7_class()`: + ! `class` must be an S7 class object, not the number 1. + +# can check with actual class + + Foo() inherits from not . + +--- + + Baz() inherits from / not . + diff --git a/tests/testthat/test-expect-inheritance.R b/tests/testthat/test-expect-inheritance.R index 0129dc090..721b847b0 100644 --- a/tests/testthat/test-expect-inheritance.R +++ b/tests/testthat/test-expect-inheritance.R @@ -56,8 +56,24 @@ test_that("test_s3_class can request exact match", { expect_success(expect_s3_class(x, c("a", "b"), exact = TRUE)) }) - test_that("expect_s3_class allows unquoting of first argument", { f <- factor("a") expect_success(expect_s3_class(!! rlang::quo(f), "factor")) }) + + +# expect_s7_class -------------------------------------------------------- + +test_that("checks its inputs", { + expect_snapshot(expect_s7_class(1, 1), error = TRUE) +}) + +test_that("can check with actual class", { + Foo <- S7::new_class("Foo") + Bar <- S7::new_class("Bar") + expect_success(expect_s7_class(Foo(), class = Foo)) + expect_snapshot_failure(expect_s7_class(Foo(), class = Bar)) + + Baz <- S7::new_class("Baz", parent = Foo) + expect_snapshot_failure(expect_s7_class(Baz(), class = Bar)) +}) From 81c3655f2d230589acdafc4a0d4aeb2ac66ca02c Mon Sep 17 00:00:00 2001 From: Hadley Wickham Date: Wed, 6 Nov 2024 11:20:57 -0600 Subject: [PATCH 30/36] Updates for `expect_vector()` (#2018) * Check that {vctrs} is installed. * Remove version check from examples * Use `@examplesIf` --- R/expect-vector.R | 5 ++--- man/expect_vector.Rd | 4 ++-- 2 files changed, 4 insertions(+), 5 deletions(-) diff --git a/R/expect-vector.R b/R/expect-vector.R index a972ef43f..e62da16e8 100644 --- a/R/expect-vector.R +++ b/R/expect-vector.R @@ -10,13 +10,12 @@ #' size-0 (empty) generalised vector. #' @param size (Optional) Size to check for. #' @export -#' @examples -#' if (requireNamespace("vctrs") && packageVersion("vctrs") > "0.1.0.9002") { +#' @examplesIf requireNamespace("vctrs") #' expect_vector(1:10, ptype = integer(), size = 10) #' show_failure(expect_vector(1:10, ptype = integer(), size = 5)) #' show_failure(expect_vector(1:10, ptype = character(), size = 5)) -#' } expect_vector <- function(object, ptype = NULL, size = NULL) { + check_installed("vctrs") act <- quasi_label(enquo(object), arg = "object") message <- NULL diff --git a/man/expect_vector.Rd b/man/expect_vector.Rd index 6f4b67fc0..cf44af85f 100644 --- a/man/expect_vector.Rd +++ b/man/expect_vector.Rd @@ -24,9 +24,9 @@ means that it used the vctrs of \code{ptype} (prototype) and \code{size}. See details in \url{https://vctrs.r-lib.org/articles/type-size.html} } \examples{ -if (requireNamespace("vctrs") && packageVersion("vctrs") > "0.1.0.9002") { +\dontshow{if (requireNamespace("vctrs")) (if (getRversion() >= "3.4") withAutoprint else force)(\{ # examplesIf} expect_vector(1:10, ptype = integer(), size = 10) show_failure(expect_vector(1:10, ptype = integer(), size = 5)) show_failure(expect_vector(1:10, ptype = character(), size = 5)) -} +\dontshow{\}) # examplesIf} } From 7513d617bcb153918e956c724c6f95960230677e Mon Sep 17 00:00:00 2001 From: Hadley Wickham Date: Thu, 7 Nov 2024 08:13:47 -0600 Subject: [PATCH 31/36] Polish news --- NEWS.md | 57 +++++++++++++++++++++++++++++++++++++++++---------------- 1 file changed, 41 insertions(+), 16 deletions(-) diff --git a/NEWS.md b/NEWS.md index 44e957b05..6304f6b78 100644 --- a/NEWS.md +++ b/NEWS.md @@ -1,22 +1,47 @@ # testthat (development version) -* New `expect_s7_class()` for testing if an object is an S7 class (#1580). -* `expect_error()` and friends now error if you supply `...` but not `pattern` (#1932). -* New `expect_no_failure()`, `expect_no_success()` and `expect_snapshot_failure()` provide more options for testing expectations. -* `expect_error()` and friends no longer give an uninformative error if they fail inside a magrittr pipe (#1994). +## New expectations + +* `expect_s7_class()` tests if an object is an S7 class (#1580). + +* `expect_no_failure()`, `expect_no_success()` and `expect_snapshot_failure()` + provide more options for testing expectations. + +## Bug fixes and minor improvements + +* testthat now requires waldo 0.6.0 or later to access the latest features + (#1955). + +* `expect_condition()` and related functions now include the `class` of the + expected condition in the failure message, if provided (#1987). + +* `expect_error()` and friends now error if you supply `...` but not `pattern` + (#1932). They no longer give an uninformative error if they fail inside + a magrittr pipe (#1994). + +* `expect_no_*()` expectations no longer incorrectly emit a passing test result + if they in fact fail (#1997). + * `expect_setequal()` correctly identifies what is missing where (#1962). -* `expect_true()` and `expect_false()` give better errors if `actual` isn't a vector (#1996). -* `expect_no_*()` expectations no longer incorrectly emit a passing test result if they in fact fail (#1997). -* Require the latest version of waldo (0.6.0) in order to get the latest goodies (#1955). -* `expect_visible()` and `expect_invisible()` have improved failure messages (#1966). -* `expect_snapshot()` now strips line breaks in test descriptions (@LDSamson, #1900). -* `expect_snapshot()` now errors when called from a `test_that()` that has an empty description (@kevinushey, #1980). -* `skip_if_not_installed()` produces a clearer message (@MichaelChirico, #1959). -* `with_mock()` and `local_mock()` have been unconditionally deprecated as they will no longer work in future versions of R (#1999). -* `expect_condition()` and friends now include the `class` of the expected condition in the failure mesage, if used (#1987). -* `LANGUAGE` is now set to `"C"` in reprocucible environments (i.e. - `test_that()` blocks) to disable translations. This fixes warnings - about being unable to set the language to `"en"` (#1925). + +* `expect_snapshot()` now strips line breaks in test descriptions + (@LDSamson, #1900), and errors when called from a `test_that()` that has an + empty description (@kevinushey, #1980). + +* `expect_true()` and `expect_false()` give better errors if `actual` isn't a + vector (#1996). + +* `expect_visible()` and `expect_invisible()` have clearer failure messages + (#1966). +* `local_reproducible_output()` (used in `test_that()` blocks) now sets + `LANGUAGE` to `"C"` instead of `"en"` to disable translations, + avoiding warnings on some platforms (#1925). + +* `skip_if_not_installed()` generates a clearer message that sorts better + (@MichaelChirico, #1959). + +* `with_mock()` and `local_mock()` have been unconditionally deprecated as + they will no longer work in future versions of R (#1999). # testthat 3.2.1 From 2cee18ff62fdb9839173d7c275d0e4f5bfd7bf81 Mon Sep 17 00:00:00 2001 From: Hadley Wickham Date: Thu, 7 Nov 2024 11:19:35 -0600 Subject: [PATCH 32/36] Check revdeps --- revdep/README.md | 1410 +----- revdep/cran.md | 279 +- revdep/failures.md | 10541 ++++++++++++++++++++++++++++++++++++++++++- revdep/problems.md | 1903 +++++++- 4 files changed, 12864 insertions(+), 1269 deletions(-) diff --git a/revdep/README.md b/revdep/README.md index 0a52ce160..a36e6b15c 100644 --- a/revdep/README.md +++ b/revdep/README.md @@ -1,1215 +1,207 @@ # Revdeps -## Failed to check (1202) +## Failed to check (157) -|package |version |error |warning |note | -|:------------------------------------------|:-------|:-----|:-------|:----| -|abseqR |? | | | | -|ADAM |? | | | | -|ADAMgui |? | | | | -|adductomicsR |? | | | | -|ADImpute |? | | | | -|aggregateBioVar |? | | | | -|airpart |? | | | | -|alabaster.base |? | | | | -|alabaster.bumpy |? | | | | -|alabaster.files |? | | | | -|alabaster.mae |? | | | | -|alabaster.matrix |? | | | | -|alabaster.ranges |? | | | | -|alabaster.sce |? | | | | -|alabaster.se |? | | | | -|alabaster.spatial |? | | | | -|alabaster.string |? | | | | -|alabaster.vcf |? | | | | -|ALDEx2 |? | | | | -|alevinQC |? | | | | -|AllelicImbalance |? | | | | -|AlpsNMR |? | | | | -|AMARETTO |? | | | | -|amplican |? | | | | -|ANCOMBC |? | | | | -|AneuFinder |? | | | | -|AnnotationFilter |? | | | | -|annotatr |? | | | | -|AnVIL |? | | | | -|AnVILBilling |? | | | | -|AnVILPublish |? | | | | -|APAlyzer |? | | | | -|apeglm |? | | | | -|APL |? | | | | -|artMS |? | | | | -|ASAFE |? | | | | -|ASICS |? | | | | -|ASSIGN |? | | | | -|ASURAT |? | | | | -|ATACseqQC |? | | | | -|ATACseqTFEA |? | | | | -|atSNP |? | | | | -|AUCell |? | | | | -|autonomics |? | | | | -|awst |? | | | | -|bacon |? | | | | -|ballgown |? | | | | -|bambu |? | | | | -|bamsignals |? | | | | -|BANDITS |? | | | | -|bandle |? | | | | -|banocc |? | | | | -|barcodetrackR |? | | | | -|basecallQC |? | | | | -|BASiCS |? | | | | -|BASiCStan |? | | | | -|basilisk |? | | | | -|basilisk.utils |? | | | | -|batchelor |? | | | | -|BatchQC |? | | | | -|bayesdfa |1.3.1 |1 | | | -|BayesSpace |? | | | | -|bayNorm |? | | | | -|beachmat |? | | | | -|beachmat.hdf5 |? | | | | -|BEARscc |? | | | | -|BEclear |? | | | | -|beer |? | | | | -|benchdamic |? | | | | -|benchmarkfdrData2019 |? | | | | -|BG2 |? | | | | -|BgeeCall |? | | | | -|BgeeDB |? | | | | -|BiFET |? | | | | -|BindingSiteFinder |? | | | | -|bioassayR |? | | | | -|biobroom |? | | | | -|biobtreeR |? | | | | -|bioCancer |? | | | | -|BioCartaImage |? | | | | -|BiocBook |? | | | | -|BiocFHIR |? | | | | -|BiocFileCache |? | | | | -|BiocHail |? | | | | -|BiocIO |? | | | | -|BiocNeighbors |? | | | | -|BiocOncoTK |? | | | | -|BioCor |? | | | | -|BiocPkgTools |? | | | | -|BiocSet |? | | | | -|BiocSingular |? | | | | -|BiocSklearn |? | | | | -|biocthis |? | | | | -|biodb |? | | | | -|biodbChebi |? | | | | -|biodbExpasy |? | | | | -|biodbHmdb |? | | | | -|biodbKegg |? | | | | -|biodbLipidmaps |? | | | | -|biodbMirbase |? | | | | -|biodbNcbi |? | | | | -|biodbNci |? | | | | -|biodbUniprot |? | | | | -|biomaRt |? | | | | -|BioMartGOGeneSets |? | | | | -|biomformat |? | | | | -|BioNAR |? | | | | -|BioNERO |? | | | | -|BioQC |? | | | | -|biosigner |? | | | | -|biotmle |? | | | | -|biscuiteer |? | | | | -|blacksheepr |? | | | | -|BloodGen3Module |? | | | | -|bluster |? | | | | -|BOBaFIT |? | | | | -|bodymapRat |? | | | | -|Boom |0.9.11 |1 | | | -|BP4RNAseq |? | | | | -|BPRMeth |? | | | | -|brainflowprobes |? | | | | -|breakpointR |? | | | | -|brendaDb |? | | | | -|BRGenomics |? | | | | -|BridgeDbR |? | | | | -|BSgenome.Hsapiens.UCSC.hg38.dbSNP151.major |? | | | | -|BSgenome.Hsapiens.UCSC.hg38.dbSNP151.minor |? | | | | -|BSgenomeForge |? | | | | -|bsseq |? | | | | -|bugsigdbr |? | | | | -|BUMHMM |? | | | | -|bumphunter |? | | | | -|BumpyMatrix |? | | | | -|BUSpaRse |? | | | | -|CaDrA |? | | | | -|cageminer |? | | | | -|canceR |? | | | | -|cardelino |? | | | | -|Cardinal |? | | | | -|CardinalIO |? | | | | -|CARNIVAL |? | | | | -|CATALYST |? | | | | -|CBEA |? | | | | -|cBioPortalData |? | | | | -|CBNplot |? | | | | -|cbpManager |? | | | | -|ccImpute |? | | | | -|ccmap |? | | | | -|CCPlotR |? | | | | -|celaref |? | | | | -|celda |? | | | | -|CellaRepertorium |? | | | | -|CellBarcode |? | | | | -|CellBench |? | | | | -|celldex |? | | | | -|CelliD |? | | | | -|cellity |? | | | | -|CellMixS |? | | | | -|CellScore |? | | | | -|cellxgenedp |? | | | | -|CEMiTool |? | | | | -|censcyt |? | | | | -|Cepo |? | | | | -|ceRNAnetsim |? | | | | -|CeTF |? | | | | -|cfDNAPro |? | | | | -|cfTools |? | | | | -|cfToolsData |? | | | | -|CHETAH |? | | | | -|Chicago |? | | | | -|chihaya |? | | | | -|chimeraviz |? | | | | -|chipenrich |? | | | | -|chipenrich.data |? | | | | -|ChIPexoQual |? | | | | -|ChIPpeakAnno |? | | | | -|ChIPseeker |? | | | | -|ChromSCape |? | | | | -|chromstaR |? | | | | -|chromVAR |? | | | | -|cicero |? | | | | -|CIMICE |? | | | | -|CINdex |? | | | | -|circRNAprofiler |? | | | | -|CircSeqAlignTk |? | | | | -|cleaver |? | | | | -|cliProfiler |? | | | | -|cliqueMS |? | | | | -|CluMSID |? | | | | -|clusterExperiment |? | | | | -|ClusterJudge |? | | | | -|clusterProfiler |? | | | | -|ClusterSignificance |? | | | | -|clustifyr |? | | | | -|ClustIRR |? | | | | -|cmapR |? | | | | -|CNEr |? | | | | -|CNVMetrics |? | | | | -|CNVPanelizer |? | | | | -|COCOA |? | | | | -|CoGAPS |? | | | | -|cogeqc |? | | | | -|Cogito |? | | | | -|cola |? | | | | -|comapr |? | | | | -|combi |? | | | | -|coMethDMR |? | | | | -|COMPASS |? | | | | -|compcodeR |? | | | | -|ComplexHeatmap |? | | | | -|CompoundDb |? | | | | -|ComPrAn |? | | | | -|compSPOT |? | | | | -|concordexR |? | | | | -|condiments |? | | | | -|consICA |? | | | | -|CopyNumberPlots |? | | | | -|coRdon |? | | | | -|CoreGx |? | | | | -|corral |? | | | | -|coseq |? | | | | -|CoSIA |? | | | | -|COSMIC.67 |? | | | | -|cosmosR |? | | | | -|COTAN |? | | | | -|countsimQC |? | | | | -|crisprBase |? | | | | -|crisprBowtie |? | | | | -|crisprBwa |? | | | | -|crisprDesign |? | | | | -|crisprScore |? | | | | -|crisprScoreData |? | | | | -|CRISPRseek |? | | | | -|CrispRVariants |? | | | | -|crisprVerse |? | | | | -|crisprViz |? | | | | -|crossmeta |? | | | | -|csaw |? | | | | -|csdR |? | | | | -|CTdata |? | | | | -|cTRAP |? | | | | -|ctsem |3.9.1 |1 | | | -|ctsGE |? | | | | -|CTSV |? | | | | -|curatedAdipoChIP |? | | | | -|curatedAdipoRNA |? | | | | -|CuratedAtlasQueryR |? | | | | -|curatedMetagenomicData |? | | | | -|curatedTBData |? | | | | -|curatedTCGAData |? | | | | -|customCMPdb |? | | | | -|cydar |? | | | | -|CyTOFpower |? | | | | -|cytofQC |? | | | | -|CytoGLMM |? | | | | -|cytoKernel |? | | | | -|cytomapper |? | | | | -|CytoML |? | | | | -|CytoPipeline |? | | | | -|CytoPipelineGUI |? | | | | -|cytoviewer |? | | | | -|dagLogo |? | | | | -|DAMEfinder |? | | | | -|DaMiRseq |? | | | | -|DAPAR |? | | | | -|dcanr |? | | | | -|DCATS |? | | | | -|dce |? | | | | -|ddCt |? | | | | -|dearseq |? | | | | -|debCAM |? | | | | -|debrowser |? | | | | -|decontX |? | | | | -|deconvR |? | | | | -|decoupleR |? | | | | -|DeepPINCS |? | | | | -|DEFormats |? | | | | -|DEGreport |? | | | | -|DelayedDataFrame |? | | | | -|DelayedMatrixStats |? | | | | -|DelayedRandomArray |? | | | | -|DelayedTensor |? | | | | -|demuxmix |? | | | | -|demuxSNP |? | | | | -|densvis |? | | | | -|DEP |? | | | | -|DepecheR |? | | | | -|DepInfeR |? | | | | -|derfinder |? | | | | -|derfinderHelper |? | | | | -|derfinderPlot |? | | | | -|DEScan2 |? | | | | -|DESeq2 |? | | | | -|DESpace |? | | | | -|destiny |? | | | | -|DEWSeq |? | | | | -|DEXSeq |? | | | | -|DIAlignR |? | | | | -|DiffBind |? | | | | -|diffcyt |? | | | | -|DifferentialRegulation |? | | | | -|diffHic |? | | | | -|DiffLogo |? | | | | -|diffuStats |? | | | | -|Dino |? | | | | -|dir.expiry |? | | | | -|discordant |? | | | | -|DiscoRhythm |? | | | | -|distinct |? | | | | -|dittoSeq |? | | | | -|DMCHMM |? | | | | -|DNABarcodeCompatibility |? | | | | -|DNAfusion |? | | | | -|DNAshapeR |? | | | | -|DNAZooData |? | | | | -|DominoEffect |? | | | | -|doppelgangR |? | | | | -|dorothea |? | | | | -|Doscheda |? | | | | -|DOSE |? | | | | -|doubletrouble |? | | | | -|drawProteins |? | | | | -|DRIMSeq |? | | | | -|DropletTestFiles |? | | | | -|DropletUtils |? | | | | -|dStruct |? | | | | -|Dune |? | | | | -|easier |? | | | | -|easierData |? | | | | -|easylift |? | | | | -|EBSeq |? | | | | -|EDASeq |? | | | | -|edge |? | | | | -|EDIRquery |? | | | | -|eds |? | | | | -|EGAD |? | | | | -|eisaR |? | | | | -|ELMER |? | | | | -|EmpiricalBrownsMethod |? | | | | -|emtdata |? | | | | -|enhancerHomologSearch |? | | | | -|EnMCB |? | | | | -|EnrichedHeatmap |? | | | | -|enrichTF |? | | | | -|enrichViewNet |? | | | | -|ensembldb |? | | | | -|EpiDISH |? | | | | -|epigraHMM |? | | | | -|epimutacions |? | | | | -|epistack |? | | | | -|epistasisGA |? | | | | -|EpiTxDb |? | | | | -|EpiTxDb.Hs.hg38 |? | | | | -|EpiTxDb.Mm.mm10 |? | | | | -|EpiTxDb.Sc.sacCer3 |? | | | | -|epivizr |? | | | | -|epivizrChart |? | | | | -|epivizrData |? | | | | -|epivizrServer |? | | | | -|epivizrStandalone |? | | | | -|esATAC |? | | | | -|escape |? | | | | -|EWCE |? | | | | -|ewceData |? | | | | -|ExperimentSubset |? | | | | -|ExploreModelMatrix |? | | | | -|ExpressionAtlas |? | | | | -|extraChIPs |? | | | | -|factR |? | | | | -|famat |? | | | | -|FastqCleaner |? | | | | -|fastreeR |? | | | | -|fdaPDE |1.1-16 |1 | | | -|FEAST |? | | | | -|FeatSeekR |? | | | | -|fedup |? | | | | -|FELLA |? | | | | -|fenr |? | | | | -|fgsea |? | | | | -|FindIT2 |? | | | | -|fishpond |? | | | | -|FLAMES |? | | | | -|flowAI |? | | | | -|flowClust |? | | | | -|flowCore |? | | | | -|flowGate |? | | | | -|flowGraph |? | | | | -|flowPloidy |? | | | | -|FlowSOM |? | | | | -|FlowSorted.Blood.EPIC |? | | | | -|FlowSorted.CordBloodCombined.450k |? | | | | -|flowSpecs |? | | | | -|flowStats |? | | | | -|flowViz |? | | | | -|flowWorkspace |? | | | | -|fmrs |? | | | | -|fobitools |? | | | | -|fourDNData |? | | | | -|FRASER |? | | | | -|frenchFISH |? | | | | -|GA4GHclient |? | | | | -|GA4GHshiny |? | | | | -|GARS |? | | | | -|gatom |? | | | | -|GBScleanR |? | | | | -|gcatest |? | | | | -|GDCRNATools |? | | | | -|gDR |? | | | | -|gDRcore |? | | | | -|gDRimport |? | | | | -|gDRstyle |? | | | | -|gDRtestData |? | | | | -|gDRutils |? | | | | -|GDSArray |? | | | | -|GEM |? | | | | -|gemini |? | | | | -|gemma.R |? | | | | -|geneAttribution |? | | | | -|geneClassifiers |? | | | | -|GENESIS |? | | | | -|GeneSummary |? | | | | -|GeneTonic |? | | | | -|geneXtendeR |? | | | | -|GENIE3 |? | | | | -|GenomAutomorphism |? | | | | -|GenomicDataCommons |? | | | | -|GenomicDistributions |? | | | | -|GenomicInteractionNodes |? | | | | -|GenomicInteractions |? | | | | -|GenomicPlot |? | | | | -|GenomicState |? | | | | -|GenomicSuperSignature |? | | | | -|GenomicTuples |? | | | | -|GenProSeq |? | | | | -|GenVisR |? | | | | -|GeoDiff |? | | | | -|GEOexplorer |? | | | | -|GEOfastq |? | | | | -|GeomxTools |? | | | | -|GEOquery |? | | | | -|GeoTcgaData |? | | | | -|gep2pep |? | | | | -|getDEE2 |? | | | | -|GeuvadisTranscriptExpr |? | | | | -|geva |? | | | | -|gg4way |? | | | | -|ggbio |? | | | | -|ggcyto |? | | | | -|ggkegg |? | | | | -|ggmanh |? | | | | -|ggmsa |? | | | | -|ggsc |? | | | | -|ggspavis |? | | | | -|ggtree |? | | | | -|ggtreeDendro |? | | | | -|ggtreeExtra |? | | | | -|GladiaTOX |? | | | | -|Glimma |? | | | | -|gllvm |1.4.3 |1 | | | -|glmGamPoi |? | | | | -|glmmrOptim |0.3.3 |1 | | | -|glmSparseNet |? | | | | -|globalSeq |? | | | | -|GloScope |? | | | | -|GmicR |? | | | | -|gmoviz |? | | | | -|GOfuncR |? | | | | -|GOpro |? | | | | -|GOSemSim |? | | | | -|goSTAG |? | | | | -|gpuMagic |? | | | | -|GRaNIE |? | | | | -|granulator |? | | | | -|graper |? | | | | -|graphite |? | | | | -|GSE159526 |? | | | | -|GSEABase |? | | | | -|GSEAmining |? | | | | -|GSgalgoR |? | | | | -|gtrellis |? | | | | -|GUIDEseq |? | | | | -|Gviz |? | | | | -|gwascat |? | | | | -|gwascatData |? | | | | -|GWENA |? | | | | -|HarmonizedTCGAData |? | | | | -|HarmonizR |? | | | | -|hca |? | | | | -|HCAData |? | | | | -|HCATonsilData |? | | | | -|HDO.db |? | | | | -|heatmaps |? | | | | -|hermes |? | | | | -|HERON |? | | | | -|Herper |? | | | | -|HGC |? | | | | -|hiAnnotator |? | | | | -|HiBED |? | | | | -|HiCcompare |? | | | | -|HiCDOC |? | | | | -|HiCExperiment |? | | | | -|HiContacts |? | | | | -|HiContactsData |? | | | | -|HiCool |? | | | | -|hicVennDiagram |? | | | | -|hierinf |? | | | | -|HilbertCurve |? | | | | -|HiLDA |? | | | | -|hipathia |? | | | | -|hiReadsProcessor |? | | | | -|hmdbQuery |? | | | | -|HMP16SData |? | | | | -|HMP2Data |? | | | | -|hoodscanR |? | | | | -|hpar |? | | | | -|HPO.db |? | | | | -|HTSFilter |? | | | | -|HubPub |? | | | | -|HumanTranscriptomeCompendium |? | | | | -|hypeR |? | | | | -|iasva |? | | | | -|icetea |? | | | | -|iCOBRA |? | | | | -|ideal |? | | | | -|idpr |? | | | | -|idr2d |? | | | | -|IgGeneUsage |? | | | | -|IHW |? | | | | -|IHWpaper |? | | | | -|imcdatasets |? | | | | -|imcRtools |? | | | | -|IMMAN |? | | | | -|ImmuneSpaceR |? | | | | -|immunoClust |? | | | | -|immunotation |? | | | | -|INDEED |? | | | | -|infercnv |? | | | | -|INTACT |? | | | | -|InTAD |? | | | | -|InteractionSet |? | | | | -|InteractiveComplexHeatmap |? | | | | -|InterCellar |? | | | | -|IntOMICS |? | | | | -|IntramiRExploreR |? | | | | -|IONiseR |? | | | | -|ipdDb |? | | | | -|ISAnalytics |? | | | | -|iSEE |? | | | | -|iSEEde |? | | | | -|iSEEhex |? | | | | -|iSEEhub |? | | | | -|iSEEindex |? | | | | -|iSEEpathways |? | | | | -|iSEEu |? | | | | -|IsoBayes |? | | | | -|IsoCorrectoR |? | | | | -|IsoCorrectoRGUI |? | | | | -|isomiRs |? | | | | -|ivygapSE |? | | | | -|karyoploteR |? | | | | -|katdetectr |? | | | | -|KBoost |? | | | | -|KEGGgraph |? | | | | -|LACE |? | | | | -|LedPred |? | | | | -|lefser |? | | | | -|lemur |? | | | | -|levi |? | | | | -|lfa |? | | | | -|lineagespot |? | | | | -|Linnorm |? | | | | -|lipidr |? | | | | -|LOLA |? | | | | -|LoomExperiment |? | | | | -|loon.shiny |? | | | | -|loon.tourr |? | | | | -|lpsymphony |? | | | | -|LRBaseDbi |? | | | | -|LRcell |? | | | | -|LRcellTypeMarkers |? | | | | -|m6Aboost |? | | | | -|Maaslin2 |? | | | | -|Macarron |? | | | | -|MACSQuantifyR |? | | | | -|MACSr |? | | | | -|magrene |? | | | | -|MAI |? | | | | -|mariner |? | | | | -|marinerData |? | | | | -|marr |? | | | | -|martini |? | | | | -|maser |? | | | | -|MAST |? | | | | -|mastR |? | | | | -|MatrixGenerics |? | | | | -|MatrixQCvis |? | | | | -|matter |? | | | | -|MBECS |? | | | | -|mbkmeans |? | | | | -|MCbiclust |? | | | | -|mdp |? | | | | -|MDTS |? | | | | -|MEAL |? | | | | -|MEAT |? | | | | -|megadepth |? | | | | -|Melissa |? | | | | -|memes |? | | | | -|MerfishData |? | | | | -|MeSHDbi |? | | | | -|metabCombiner |? | | | | -|metabinR |? | | | | -|MetaboAnnotation |? | | | | -|MetaboCoreUtils |? | | | | -|metabolomicsWorkbenchR |? | | | | -|metagenomeSeq |? | | | | -|MetaGxBreast |? | | | | -|MetaGxOvarian |? | | | | -|MetaGxPancreas |? | | | | -|MetaNeighbor |? | | | | -|metapod |? | | | | -|MetaScope |? | | | | -|MetCirc |? | | | | -|MethReg |? | | | | -|methrix |? | | | | -|methylCC |? | | | | -|methylGSA |? | | | | -|methylKit |? | | | | -|MethylMix |? | | | | -|MetNet |? | | | | -|mfa |? | | | | -|mgsa |? | | | | -|mia |? | | | | -|miaSim |? | | | | -|miaViz |? | | | | -|microbiome |? | | | | -|MicrobiomeBenchmarkData |? | | | | -|microbiomeDASim |? | | | | -|microbiomeDataSets |? | | | | -|microbiomeExplorer |? | | | | -|microbiomeMarker |? | | | | -|MicrobiomeProfiler |? | | | | -|MicrobiotaProcess |? | | | | -|microSTASIS |? | | | | -|MICSQTL |? | | | | -|midasHLA |? | | | | -|miloR |? | | | | -|mimager |? | | | | -|MIRA |? | | | | -|miRBaseVersions.db |? | | | | -|miRNAmeConverter |? | | | | -|miRNAtap |? | | | | -|missRows |? | | | | -|mistyR |? | | | | -|mitch |? | | | | -|mitoClone2 |? | | | | -|mixOmics |? | | | | -|MLInterfaces |? | | | | -|MLSeq |? | | | | -|MMUPHin |? | | | | -|moanin |? | | | | -|MobilityTransformR |? | | | | -|ModCon |? | | | | -|Modstrings |? | | | | -|MOFA2 |? | | | | -|MoleculeExperiment |? | | | | -|MOMA |? | | | | -|monaLisa |? | | | | -|monocle |? | | | | -|Moonlight2R |? | | | | -|MoonlightR |? | | | | -|mosbi |? | | | | -|MOSim |? | | | | -|motifcounter |? | | | | -|motifmatchr |? | | | | -|MouseFM |? | | | | -|MPO.db |? | | | | -|MQmetrics |? | | | | -|MSA2dist |? | | | | -|MsBackendMassbank |? | | | | -|MsBackendMgf |? | | | | -|MsBackendMsp |? | | | | -|MsBackendRawFileReader |? | | | | -|MsBackendSql |? | | | | -|MsCoreUtils |? | | | | -|MsDataHub |? | | | | -|MsExperiment |? | | | | -|MsFeatures |? | | | | -|msigdb |? | | | | -|MSnbase |? | | | | -|MSPrep |? | | | | -|msPurity |? | | | | -|msqc1 |? | | | | -|msqrob2 |? | | | | -|MsQuality |? | | | | -|MSstatsQC |? | | | | -|MSstatsShiny |? | | | | -|MSstatsTMT |? | | | | -|MuData |? | | | | -|MultiAssayExperiment |? | | | | -|multicrispr |? | | | | -|MultiDataSet |? | | | | -|multiGSEA |? | | | | -|multiHiCcompare |? | | | | -|multiMiR |? | | | | -|MultiRNAflow |? | | | | -|multiWGCNA |? | | | | -|mumosa |? | | | | -|MungeSumstats |? | | | | -|muscat |? | | | | -|musicatk |? | | | | -|MutationalPatterns |? | | | | -|mzID |? | | | | -|NADfinder |? | | | | -|NanoMethViz |? | | | | -|NanoStringDiff |? | | | | -|nanotatoR |? | | | | -|NanoTube |? | | | | -|NBAMSeq |? | | | | -|ncdfFlow |? | | | | -|ncGTW |? | | | | -|ndexr |? | | | | -|Nebulosa |? | | | | -|NestLink |? | | | | -|NetActivity |? | | | | -|netDx |? | | | | -|nethet |? | | | | -|netOmics |? | | | | -|netSmooth |? | | | | -|netZooR |? | | | | -|NewWave |? | | | | -|ngsReports |? | | | | -|nipalsMCIA |? | | | | -|nnSVG |? | | | | -|NoRCE |? | | | | -|NormalyzerDE |? | | | | -|normr |? | | | | -|NPARC |? | | | | -|nucleoSim |? | | | | -|nucleR |? | | | | -|nuCpos |? | | | | -|nullranges |? | | | | -|NxtIRFdata |? | | | | -|ObMiTi |? | | | | -|OGRE |? | | | | -|omada |? | | | | -|OmaDB |? | | | | -|omicsPrint |? | | | | -|Omixer |? | | | | -|OmnipathR |? | | | | -|ompBAM |? | | | | -|oncomix |? | | | | -|oncoscanR |? | | | | -|OncoScore |? | | | | -|OncoSimulR |? | | | | -|onlineFDR |? | | | | -|ontoProc |? | | | | -|ontoProcData |? | | | | -|openCyto |? | | | | -|openPrimeR |? | | | | -|OPWeight |? | | | | -|ORFik |? | | | | -|Organism.dplyr |? | | | | -|orthogene |? | | | | -|orthos |? | | | | -|orthosData |? | | | | -|Oscope |? | | | | -|OUTRIDER |? | | | | -|OutSplice |? | | | | -|OVESEG |? | | | | -|packFinder |? | | | | -|padma |? | | | | -|PAIRADISE |? | | | | -|pairedGSEA |? | | | | -|PanomiR |? | | | | -|PanViz |? | | | | -|pareg |? | | | | -|parody |? | | | | -|partCNV |? | | | | -|PasillaTranscriptExpr |? | | | | -|PathoStat |? | | | | -|pathwayPCA |? | | | | -|paxtoolsr |? | | | | -|pcaExplorer |? | | | | -|PCAtools |? | | | | -|PCHiCdata |? | | | | -|PDATK |? | | | | -|peakPantheR |? | | | | -|pengls |? | | | | -|periodicDNA |? | | | | -|pgca |? | | | | -|phantasus |? | | | | -|phantasusLite |? | | | | -|PharmacoGx |? | | | | -|phenomis |? | | | | -|phenopath |? | | | | -|philr |? | | | | -|PhIPData |? | | | | -|phosphonormalizer |? | | | | -|PhosR |? | | | | -|PhyloProfile |? | | | | -|phyloseq |? | | | | -|pipeFrame |? | | | | -|planet |? | | | | -|planttfhunter |? | | | | -|plasmut |? | | | | -|plotgardener |? | | | | -|plotGrouper |? | | | | -|plyinteractions |? | | | | -|plyranges |? | | | | -|pmp |? | | | | -|PoDCall |? | | | | -|pogos |? | | | | -|POMA |? | | | | -|POWSC |? | | | | -|ppcseq |? | | | | -|pqsfinder |? | | | | -|pram |? | | | | -|preciseTAD |? | | | | -|proActiv |? | | | | -|proDA |? | | | | -|profileplyr |? | | | | -|progeny |? | | | | -|projectR |? | | | | -|pRoloc |? | | | | -|pRolocdata |? | | | | -|pRolocGUI |? | | | | -|Prostar |? | | | | -|proteinProfiles |? | | | | -|ProteoDisco |? | | | | -|ProtGenerics |? | | | | -|psichomics |? | | | | -|PSMatch |? | | | | -|psygenet2r |? | | | | -|ptairData |? | | | | -|ptairMS |? | | | | -|PureCN |? | | | | -|PWMEnrich |? | | | | -|qckitfastq |? | | | | -|QFeatures |? | | | | -|qmtools |? | | | | -|qPLEXanalyzer |? | | | | -|qsea |? | | | | -|qsmooth |? | | | | -|qsvaR |? | | | | -|QTLExperiment |? | | | | -|Qtlizer |? | | | | -|quantiseqr |? | | | | -|QuasR |? | | | | -|raer |? | | | | -|raerdata |? | | | | -|RaggedExperiment |? | | | | -|RAIDS |? | | | | -|RandomWalkRestartMH |? | | | | -|randRotation |? | | | | -|RAREsim |? | | | | -|rawrr |? | | | | -|RBioFormats |? | | | | -|Rbowtie |? | | | | -|Rbowtie2 |? | | | | -|Rbwa |? | | | | -|RCAS |? | | | | -|rcellminer |? | | | | -|rcellminerData |? | | | | -|RCM |? | | | | -|Rcollectl |? | | | | -|Rcpi |? | | | | -|Rcwl |? | | | | -|RcwlPipelines |? | | | | -|RCX |? | | | | -|rDGIdb |? | | | | -|ReactomeContentService4R |? | | | | -|ReactomeGraph4R |? | | | | -|ReactomeGSA |? | | | | -|ReactomePA |? | | | | -|rebook |? | | | | -|receptLoss |? | | | | -|reconsi |? | | | | -|recount |? | | | | -|recount3 |? | | | | -|recountmethylation |? | | | | -|RedisParam |? | | | | -|regionalpcs |? | | | | -|RegionalST |? | | | | -|regioneR |? | | | | -|regioneReloaded |? | | | | -|regsplice |? | | | | -|regutools |? | | | | -|RepViz |? | | | | -|ResidualMatrix |? | | | | -|RESOLVE |? | | | | -|restfulSE |? | | | | -|retrofit |? | | | | -|rexposome |? | | | | -|Rfastp |? | | | | -|rGenomeTracks |? | | | | -|RgnTX |? | | | | -|rgoslin |? | | | | -|rGREAT |? | | | | -|rhdf5 |? | | | | -|rhdf5client |? | | | | -|Rhisat2 |? | | | | -|RiboCrypt |? | | | | -|RiboProfiling |? | | | | -|ribor |? | | | | -|ribosomeProfilingQC |? | | | | -|RIVER |? | | | | -|RLSeq |? | | | | -|rmelting |? | | | | -|Rmmquant |? | | | | -|rmspc |? | | | | -|RNAAgeCalc |? | | | | -|rnaEditr |? | | | | -|RNAmodR |? | | | | -|RNAmodR.AlkAnilineSeq |? | | | | -|RNAmodR.Data |? | | | | -|RNAmodR.ML |? | | | | -|RNAmodR.RiboMethSeq |? | | | | -|RNAseqCovarImpute |? | | | | -|RnaSeqSampleSize |? | | | | -|roar |? | | | | -|RolDE |? | | | | -|rols |? | | | | -|ropls |? | | | | -|ROSeq |? | | | | -|ROTS |? | | | | -|rprimer |? | | | | -|rpx |? | | | | -|Rqc |? | | | | -|rrvgo |? | | | | -|rScudo |? | | | | -|rsemmed |? | | | | -|RSeqAn |? | | | | -|rstanarm |2.26.1 |1 | | | -|RTCGA |? | | | | -|Rtpca |? | | | | -|runibic |? | | | | -|RVS |? | | | | -|rWikiPathways |? | | | | -|S4Arrays |? | | | | -|sangeranalyseR |? | | | | -|SARC |? | | | | -|satuRn |? | | | | -|SBGNview |? | | | | -|ScaledMatrix |? | | | | -|scanMiR |? | | | | -|scanMiRApp |? | | | | -|scAnnotatR |? | | | | -|scATAC.Explorer |? | | | | -|scater |? | | | | -|scatterHatch |? | | | | -|scBFA |? | | | | -|scBubbletree |? | | | | -|scCB2 |? | | | | -|sccomp |? | | | | -|scDblFinder |? | | | | -|scDDboost |? | | | | -|scDesign3 |? | | | | -|scFeatureFilter |? | | | | -|scGPS |? | | | | -|schex |? | | | | -|scider |? | | | | -|scifer |? | | | | -|scMerge |? | | | | -|scMET |? | | | | -|scMultiome |? | | | | -|scone |? | | | | -|Sconify |? | | | | -|SCOPE |? | | | | -|scoreInvHap |? | | | | -|scp |? | | | | -|scPCA |? | | | | -|scpdata |? | | | | -|scPipe |? | | | | -|scran |? | | | | -|scReClassify |? | | | | -|scRecover |? | | | | -|screenCounter |? | | | | -|ScreenR |? | | | | -|scRNAseq |? | | | | -|scRNAseqApp |? | | | | -|scruff |? | | | | -|scry |? | | | | -|scShapes |? | | | | -|scTensor |? | | | | -|scTGIF |? | | | | -|scTreeViz |? | | | | -|scuttle |? | | | | -|scviR |? | | | | -|SDAMS |? | | | | -|segmenter |? | | | | -|selectKSigs |? | | | | -|semisup |? | | | | -|seq.hotSPOT |? | | | | -|seqArchR |? | | | | -|seqCAT |? | | | | -|SeqGate |? | | | | -|seqLogo |? | | | | -|seqpac |? | | | | -|seqsetvis |? | | | | -|SeqSQC |? | | | | -|sesame |? | | | | -|sesameData |? | | | | -|sevenbridges |? | | | | -|sevenC |? | | | | -|SFEData |? | | | | -|SharedObject |? | | | | -|shinyepico |? | | | | -|shinyMethyl |? | | | | -|SIAMCAT |? | | | | -|sights |? | | | | -|signatureSearch |? | | | | -|signifinder |? | | | | -|SimBu |? | | | | -|SIMLR |? | | | | -|simona |? | | | | -|simpleSeg |? | | | | -|simplifyEnrichment |? | | | | -|SingleCellExperiment |? | | | | -|singleCellTK |? | | | | -|SingleMoleculeFootprinting |? | | | | -|SingleR |? | | | | -|singscore |? | | | | -|sitePath |? | | | | -|slalom |? | | | | -|slingshot |? | | | | -|SMAD |? | | | | -|smokingMouse |? | | | | -|snapcount |? | | | | -|snifter |? | | | | -|SNPediaR |? | | | | -|soGGi |? | | | | -|SomaScan.db |? | | | | -|SomaticCancerAlterations |? | | | | -|SomaticSignatures |? | | | | -|SOMNiBUS |? | | | | -|Spaniel |? | | | | -|sparrow |? | | | | -|SparseArray |? | | | | -|sparseMatrixStats |? | | | | -|sparsenetgls |? | | | | -|SparseSignatures |? | | | | -|spaSim |? | | | | -|SpatialCPie |? | | | | -|spatialDE |? | | | | -|SpatialDecon |? | | | | -|SpatialExperiment |? | | | | -|SpatialFeatureExperiment |? | | | | -|spatialLIBD |? | | | | -|SpatialOmicsOverlay |? | | | | -|spatzie |? | | | | -|speckle |? | | | | -|Spectra |? | | | | -|SpectralTAD |? | | | | -|SPIAT |? | | | | -|SpidermiR |? | | | | -|spiky |? | | | | -|splatter |? | | | | -|SpliceWiz |? | | | | -|SplicingFactory |? | | | | -|SpotClean |? | | | | -|SPOTlight |? | | | | -|SPsimSeq |? | | | | -|SQLDataFrame |? | | | | -|srnadiff |? | | | | -|sSNAPPY |? | | | | -|ssPATHS |? | | | | -|ssrch |? | | | | -|stageR |? | | | | -|standR |? | | | | -|StarBioTrek |? | | | | -|Statial |? | | | | -|statTarget |? | | | | -|STdeconvolve |? | | | | -|stJoincount |? | | | | -|strandCheckR |? | | | | -|struct |? | | | | -|Structstrings |? | | | | -|structToolbox |? | | | | -|StructuralVariantAnnotation |? | | | | -|subSeq |? | | | | -|SummarizedBenchmark |? | | | | -|SummarizedExperiment |? | | | | -|supersigs |? | | | | -|surfaltr |? | | | | -|sva |? | | | | -|svaNUMT |? | | | | -|svaRetro |? | | | | -|SVMDO |? | | | | -|SWATH2stats |? | | | | -|swfdr |? | | | | -|switchde |? | | | | -|synapsis |? | | | | -|synapter |? | | | | -|synaptome.db |? | | | | -|synlet |? | | | | -|SynMut |? | | | | -|syntenet |? | | | | -|systemPipeR |? | | | | -|systemPipeShiny |? | | | | -|systemPipeTools |? | | | | -|TabulaMurisData |? | | | | -|TabulaMurisSenisData |? | | | | -|tadar |? | | | | -|TADCompare |? | | | | -|TAPseq |? | | | | -|target |? | | | | -|TargetDecoy |? | | | | -|tartare |? | | | | -|TBSignatureProfiler |? | | | | -|TCGAbiolinks |? | | | | -|TCGAutils |? | | | | -|TCGAWorkflowData |? | | | | -|TCseq |? | | | | -|TDbasedUFE |? | | | | -|TDbasedUFEadv |? | | | | -|TEKRABber |? | | | | -|tenXplore |? | | | | -|ternarynet |? | | | | -|terraTCGAdata |? | | | | -|TFBSTools |? | | | | -|TFutils |? | | | | -|tidybulk |? | | | | -|tidySingleCellExperiment |? | | | | -|tidySummarizedExperiment |? | | | | -|TileDBArray |? | | | | -|timecoursedata |? | | | | -|timeOmics |? | | | | -|TimiRGeN |? | | | | -|TissueEnrich |? | | | | -|tissueTreg |? | | | | -|TMixClust |? | | | | -|TnT |? | | | | -|tomoda |? | | | | -|tomoseqr |? | | | | -|topconfects |? | | | | -|topdownr |? | | | | -|ToxicoGx |? | | | | -|TPP |? | | | | -|TPP2D |? | | | | -|tradeSeq |? | | | | -|TrajectoryUtils |? | | | | -|transcriptR |? | | | | -|transformGamPoi |? | | | | -|transite |? | | | | -|transomics2cytoscape |? | | | | -|traviz |? | | | | -|treeio |? | | | | -|treekoR |? | | | | -|TreeSummarizedExperiment |? | | | | -|TREG |? | | | | -|tricycle |? | | | | -|TriDimRegression |1.0.2 |1 | | | -|tripr |? | | | | -|triptych |0.1.2 |1 | | | -|tRNA |? | | | | -|tRNAdbImport |? | | | | -|tRNAscanImport |? | | | | -|TRONCO |? | | | | -|TSAR |? | | | | -|TSCAN |? | | | | -|ttgsea |? | | | | -|TVTB |? | | | | -|twoddpcr |? | | | | -|txcutr |? | | | | -|tximeta |? | | | | -|tximport |? | | | | -|UMI4Cats |? | | | | -|uncoverappLib |? | | | | -|UniProtKeywords |? | | | | -|Uniquorn |? | | | | -|universalmotif |? | | | | -|updateObject |? | | | | -|uSORT |? | | | | -|VAExprs |? | | | | -|VarCon |? | | | | -|VariantExperiment |? | | | | -|VCFArray |? | | | | -|VDJdive |? | | | | -|velociraptor |? | | | | -|veloviz |? | | | | -|VennDetail |? | | | | -|VERSO |? | | | | -|vidger |? | | | | -|vissE |? | | | | -|Voyager |? | | | | -|VplotR |? | | | | -|vsclust |? | | | | -|vsn |? | | | | -|waddR |? | | | | -|weitrix |? | | | | -|wiggleplotr |? | | | | -|wpm |? | | | | -|wppi |? | | | | -|xcms |? | | | | -|xcore |? | | | | -|XNAString |? | | | | -|yamss |? | | | | -|YAPSA |? | | | | -|yarn |? | | | | -|zellkonverter |? | | | | -|zinbwave |? | | | | -|ZygosityPredictor |? | | | | +|package |version |error |warning |note | +|:-------------------|:----------|:------|:-------|:----| +|adjustedCurves |? | | | | +|ai |? | | | | +|aorsf |? | | | | +|apollo |0.3.4 |1 | | | +|arealDB |0.6.3 |1 | | | +|assessor |1.1.0 |1 | | | +|atom4R |0.3-3 |1 | | | +|BANAM |0.2.1 |1 | | | +|bayesCT |0.99.3 |1 | | | +|bayesDP |1.3.6 |1 | | | +|BayesFactor |0.9.12-4.7 |1 | | | +|bbknnR |1.1.1 |1 | | | +|BCClong |1.0.3 |1 | | | +|BFpack |1.3.0 |1 | | | +|BGGM |2.1.3 |1 | | | +|[bmgarch](failures.md#bmgarch)|2.0.0 |__+1__ | |-2 | +|bnnSurvival |? | | | | +|BSTZINB |1.0.1 |1 | | | +|BuyseTest |? | | | | +|CACIMAR |1.0.0 |1 | | | +|censored |? | | | | +|Certara.VPCResults |3.0.1 |1 | | | +|CGPfunctions |0.6.3 |1 | | | +|chipPCR |1.0-2 |1 | | | +|cmmr |? | | | | +|COMBO |1.2.0 |1 | | | +|contsurvplot |? | | | | +|counterfactuals |? | | | | +|CRMetrics |0.3.0 |1 | | | +|ctsem |3.10.1 |1 | | | +|dartR.base |? | | | | +|dataone |2.2.2 |1 | | | +|datapack |1.4.1 |1 | | | +|deeptrafo |? | | | | +|DepthProc |2.1.5 |1 | | | +|dibble |? | | | | +|drtmle |1.1.2 |1 | | | +|DWLS |0.1.0 |1 | | | +|easybgm |0.2.1 |1 | | | +|EcoEnsemble |1.1.0 |1 | | | +|ecolottery |1.0.0 |1 | | | +|EdSurvey |4.0.7 |1 | | | +|emplik |1.3-1 |1 | | | +|EpiEstim |2.2-4 |1 | | | +|epizootic |1.0.0 |1 | | | +|erah |2.0.1 |1 | | | +|evolqg |0.3-4 |1 | | | +|EWSmethods |? | | | | +|ezECM |1.0.0 |1 | | | +|FAIRmaterials |0.4.2.1 |1 | | | +|FastJM |? | | | | +|fdaPDE |1.1-20 |1 | | | +|flowr |0.9.11 |1 | |1 | +|ForecastComb |1.3.1 |1 | | | +|FoReco |1.0.0 |1 | | | +|frechet |0.3.0 |1 | | | +|FREEtree |0.1.0 |1 | | | +|gapfill |0.9.6-1 |1 | |1 | +|GeomComb |1.0 |1 | | | +|geomorph |? | | | | +|gllvm |1.4.3 |1 | | | +|gmoTree |? | | | | +|gpuR |2.0.6 |1 | | | +|hettx |0.1.3 |1 | | | +|Hmsc |3.0-13 |1 | | | +|iNZightPlots |2.15.3 |1 | | | +|iNZightRegression |1.3.4 |1 | | | +|JMH |? | | | | +|joineRML |0.4.6 |1 | | | +|jsmodule |? | | | | +|kmc |0.4-2 |1 | | | +|KMunicate |? | | | | +|Landmarking |? | | | | +|lavaSearch2 |? | | | | +|lnmixsurv |? | | | | +|locpolExpectile |0.1.1 |1 | | | +|loon.shiny |? | | | | +|loon.tourr |? | | | | +|lsirm12pl |1.3.3 |1 | | | +|marlod |0.1.1 |1 | | | +|mbsts |3.0 |1 | | | +|metajam |0.3.1 |1 | | | +|mHMMbayes |1.1.0 |1 | | | +|midasr |0.8 |1 | | | +|miWQS |0.4.4 |1 | | | +|mixAR |0.22.8 |1 | | | +|mlmts |1.1.2 |1 | | | +|mlr |? | | | | +|modeLLtest |1.0.4 |1 | | | +|multilevelmediation |0.3.1 |1 | | | +|multilevelTools |0.1.1 |1 | | | +|NCA |4.0.1 |1 | | | +|netcmc |1.0.2 |1 | | | +|newIMVC |0.1.0 |1 | | | +|nlpred |1.0.1 |1 | | | +|NMADiagT |0.1.2 |1 | | | +|nse |1.21 |1 | | | +|OasisR |? | | | | +|paleopop |2.1.6 |1 | | | +|pammtools |? | | | | +|params |0.7.3 |1 | | | +|PathwaySpace |? | | | | +|pcvr |1.1.1.0 |1 | | | +|poems |1.3.1 |1 | | | +|popEpi |? | | | | +|popstudy |1.0.1 |1 | | | +|powerly |1.8.6 |1 | | | +|pre |1.0.7 |1 | | | +|pscore |0.4.0 |1 | | | +|Publish |? | | | | +|qris |1.1.1 |1 | | | +|QTOCen |0.1.1 |1 | | | +|quantspec |1.2-4 |1 | | | +|quid |0.0.1 |1 | | | +|rddtools |1.6.0 |1 | | | +|rdflib |0.2.9 |1 | | | +|redland |1.0.17-18 |1 | | | +|RGraphSpace |? | | | | +|riskRegression |? | | | | +|rlme |0.5 |1 | | | +|robber |? | | | | +|robmed |1.1.0 |1 | | | +|RQdeltaCT |1.3.0 |1 | | | +|RRPP |? | | | | +|rstanarm |2.32.1 |1 | | | +|scAnnotate |0.3 |1 | | | +|SCIntRuler |0.99.6 |1 | | | +|scMappR |1.0.11 |1 | | | +|scperturbR |0.1.0 |1 | | | +|scpi |2.2.5 |1 | | | +|SCRIP |1.0.0 |1 | | | +|SensIAT |? | | | | +|SensMap |0.7 |1 | | | +|Seurat |5.1.0 |1 | |1 | +|shinyTempSignal |0.0.8 |1 | | | +|Signac |1.14.0 |1 | | | +|SimplyAgree |0.2.0 |1 | | | +|smoothAPC |0.3 |1 | | | +|SNPassoc |? | | | | +|snplinkage |? | | | | +|statsr |0.3.0 |1 | | | +|stR |0.7 |1 | | | +|survcompare |? | | | | +|survex |? | | | | +|survHE |? | | | | +|SurvMetrics |? | | | | +|TestAnaAPP |1.1.1 |1 | | | +|tidyEdSurvey |0.1.3 |1 | | | +|tidyseurat |0.8.0 |1 | | | +|tidyvpc |1.5.1 |1 | | | +|tramicp |? | | | | +|tramvs |? | | | | +|TriDimRegression |1.0.2 |1 | | | +|TSrepr |1.1.0 |1 | | | +|visa |0.1.0 |1 | | | +|wally |? | | | | +|zen4R |0.10 |1 | | | -## New problems (1) +## New problems (38) -|package |version |error |warning |note | -|:-------|:-------|:------|:-------|:----| -|[miWQS](problems.md#miwqs)|0.4.4 |__+1__ |-1 | | +|package |version |error |warning |note | +|:----------------|:--------|:--------|:-------|:--------| +|[admtools](problems.md#admtools)|0.4.0 |__+1__ | | | +|[adproclus](problems.md#adproclus)|2.0.0 |__+1__ | | | +|[arrow](problems.md#arrow)|17.0.0.1 |__+1__ | |2 | +|[bonsai](problems.md#bonsai)|0.3.1 |__+1__ | | | +|[cfr](problems.md#cfr)|0.1.2 |__+1__ | | | +|[chainbinomial](problems.md#chainbinomial)|0.1.5 |__+1__ | | | +|[charlatan](problems.md#charlatan)|0.6.1 |__+1__ | |1 | +|[covidcast](problems.md#covidcast)|0.5.2 |__+1__ | |1 __+1__ | +|[cryptoQuotes](problems.md#cryptoquotes)|1.3.2 |__+1__ | |1 | +|[diseasystore](problems.md#diseasystore)|0.2.2 |__+1__ | | | +|[divvy](problems.md#divvy)|1.0.0 |__+1__ | |1 | +|[dsmmR](problems.md#dsmmr)|1.0.5 |__+1__ | | | +|[ecocbo](problems.md#ecocbo)|0.12.0 |__+1__ | | | +|[epiCo](problems.md#epico)|1.0.0 |__+1__ | |1 | +|[ergm](problems.md#ergm)|4.7.5 |1 __+1__ | |1 | +|[ieegio](problems.md#ieegio)|0.0.2 |__+1__ | | | +|[infer](problems.md#infer)|1.0.7 |__+1__ | | | +|[innsight](problems.md#innsight)|0.3.0 |1 | |__+1__ | +|[intergraph](problems.md#intergraph)|2.0-4 |__+1__ | | | +|[JointFPM](problems.md#jointfpm)|1.2.1 |__+1__ | | | +|[linelist](problems.md#linelist)|1.1.4 |__+1__ | | | +|[literanger](problems.md#literanger)|0.1.1 |__+1__ |1 |1 | +|[madrat](problems.md#madrat)|3.6.4 |__+1__ | | | +|[OlinkAnalyze](problems.md#olinkanalyze)|4.0.1 |1 __+1__ | |1 | +|[palaeoSig](problems.md#palaeosig)|2.1-3 |__+1__ | | | +|[posterior](problems.md#posterior)|1.6.0 |1 __+1__ | | | +|[rcausim](problems.md#rcausim)|0.1.1 |__+1__ | | | +|[rcpptimer](problems.md#rcpptimer)|1.2.1 |__+1__ | | | +|[rdecision](problems.md#rdecision)|1.2.1 |1 __+1__ | | | +|[REDCapR](problems.md#redcapr)|1.3.0 |__+1__ | | | +|[rgl](problems.md#rgl)|1.3.12 |__+1__ | |1 | +|[scoringutils](problems.md#scoringutils)|2.0.0 |__+1__ | | | +|[sonicscrewdriver](problems.md#sonicscrewdriver)|0.0.7 |__+1__ | | | +|[StratPal](problems.md#stratpal)|0.2.0 |__+1__ | | | +|[TiPS](problems.md#tips)|1.2.3 | | |1 __+1__ | +|[vines](problems.md#vines)|1.1.5 |__+1__ | | | +|[WeightIt](problems.md#weightit)|1.3.2 |__+1__ | | | +|[xpose](problems.md#xpose)|0.4.18 |__+1__ | | | diff --git a/revdep/cran.md b/revdep/cran.md index c96c9471e..aaf4870e6 100644 --- a/revdep/cran.md +++ b/revdep/cran.md @@ -1,28 +1,275 @@ ## revdepcheck results -We checked 9101 reverse dependencies (7910 from CRAN + 1191 from Bioconductor), comparing R CMD check results across CRAN and dev versions of this package. +We checked 8842 reverse dependencies (8831 from CRAN + 11 from Bioconductor), comparing R CMD check results across CRAN and dev versions of this package. - * We saw 1 new problems - * We failed to check 11 packages + * We saw 38 new problems + * We failed to check 146 packages Issues with CRAN packages are summarised below. ### New problems (This reports the first line of each new failure) -* miWQS - checking re-building of vignette outputs ... ERROR +* admtools + checking tests ... ERROR + +* adproclus + checking tests ... ERROR + +* arrow + checking tests ... ERROR + +* bonsai + checking tests ... ERROR + +* cfr + checking tests ... ERROR + +* chainbinomial + checking tests ... ERROR + +* charlatan + checking tests ... ERROR + +* covidcast + checking running R code from vignettes ... ERROR + checking re-building of vignette outputs ... NOTE + +* cryptoQuotes + checking tests ... ERROR + +* diseasystore + checking tests ... ERROR + +* divvy + checking tests ... ERROR + +* dsmmR + checking tests ... ERROR + +* ecocbo + checking tests ... ERROR + +* epiCo + checking tests ... ERROR + +* ergm + checking tests ... ERROR + +* ieegio + checking examples ... ERROR + +* infer + checking tests ... ERROR + +* innsight + checking installed package size ... NOTE + +* intergraph + checking tests ... ERROR + +* JointFPM + checking tests ... ERROR + +* linelist + checking tests ... ERROR + +* literanger + checking tests ... ERROR + +* madrat + checking tests ... ERROR + +* OlinkAnalyze + checking tests ... ERROR + +* palaeoSig + checking tests ... ERROR + +* posterior + checking tests ... ERROR + +* rcausim + checking tests ... ERROR + +* rcpptimer + checking tests ... ERROR + +* rdecision + checking tests ... ERROR + +* REDCapR + checking tests ... ERROR + +* rgl + checking tests ... ERROR + +* scoringutils + checking tests ... ERROR + +* sonicscrewdriver + checking tests ... ERROR + +* StratPal + checking tests ... ERROR + +* TiPS + checking re-building of vignette outputs ... NOTE + +* vines + checking tests ... ERROR + +* WeightIt + checking tests ... ERROR + +* xpose + checking tests ... ERROR ### Failed to check -* bayesdfa (NA) -* Boom (NA) -* ctsem (NA) -* fdaPDE (NA) -* gllvm (NA) -* glmmrOptim (NA) -* loon.shiny (NA) -* loon.tourr (NA) -* rstanarm (NA) -* TriDimRegression (NA) -* triptych (NA) +* adjustedCurves (NA) +* aorsf (NA) +* apollo (NA) +* arealDB (NA) +* assessor (NA) +* atom4R (NA) +* BANAM (NA) +* bayesCT (NA) +* bayesDP (NA) +* BayesFactor (NA) +* bbknnR (NA) +* BCClong (NA) +* BFpack (NA) +* BGGM (NA) +* bmgarch (NA) +* bnnSurvival (NA) +* BSTZINB (NA) +* BuyseTest (NA) +* CACIMAR (NA) +* censored (NA) +* Certara.VPCResults (NA) +* CGPfunctions (NA) +* chipPCR (NA) +* COMBO (NA) +* contsurvplot (NA) +* counterfactuals (NA) +* CRMetrics (NA) +* ctsem (NA) +* dartR.base (NA) +* dataone (NA) +* datapack (NA) +* deeptrafo (NA) +* DepthProc (NA) +* drtmle (NA) +* DWLS (NA) +* easybgm (NA) +* EcoEnsemble (NA) +* ecolottery (NA) +* EdSurvey (NA) +* emplik (NA) +* EpiEstim (NA) +* epizootic (NA) +* erah (NA) +* evolqg (NA) +* ezECM (NA) +* FAIRmaterials (NA) +* FastJM (NA) +* fdaPDE (NA) +* flowr (NA) +* ForecastComb (NA) +* FoReco (NA) +* frechet (NA) +* FREEtree (NA) +* gapfill (NA) +* GeomComb (NA) +* gllvm (NA) +* gpuR (NA) +* hettx (NA) +* Hmsc (NA) +* iNZightPlots (NA) +* iNZightRegression (NA) +* JMH (NA) +* joineRML (NA) +* jsmodule (NA) +* kmc (NA) +* KMunicate (NA) +* Landmarking (NA) +* lavaSearch2 (NA) +* lnmixsurv (NA) +* locpolExpectile (NA) +* loon.shiny (NA) +* loon.tourr (NA) +* lsirm12pl (NA) +* marlod (NA) +* mbsts (NA) +* metajam (NA) +* mHMMbayes (NA) +* midasr (NA) +* miWQS (NA) +* mixAR (NA) +* mlmts (NA) +* mlr (NA) +* modeLLtest (NA) +* multilevelmediation (NA) +* multilevelTools (NA) +* NCA (NA) +* netcmc (NA) +* newIMVC (NA) +* nlpred (NA) +* NMADiagT (NA) +* nse (NA) +* paleopop (NA) +* pammtools (NA) +* params (NA) +* pcvr (NA) +* poems (NA) +* popEpi (NA) +* popstudy (NA) +* powerly (NA) +* pre (NA) +* pscore (NA) +* Publish (NA) +* qris (NA) +* QTOCen (NA) +* quantspec (NA) +* quid (NA) +* rddtools (NA) +* rdflib (NA) +* redland (NA) +* riskRegression (NA) +* rlme (NA) +* robber (NA) +* robmed (NA) +* RQdeltaCT (NA) +* rstanarm (NA) +* scAnnotate (NA) +* SCIntRuler (NA) +* scMappR (NA) +* scperturbR (NA) +* scpi (NA) +* SCRIP (NA) +* SensMap (NA) +* Seurat (NA) +* shinyTempSignal (NA) +* Signac (NA) +* SimplyAgree (NA) +* smoothAPC (NA) +* SNPassoc (NA) +* snplinkage (NA) +* statsr (NA) +* stR (NA) +* survcompare (NA) +* survex (NA) +* survHE (NA) +* SurvMetrics (NA) +* TestAnaAPP (NA) +* tidyEdSurvey (NA) +* tidyseurat (NA) +* tidyvpc (NA) +* tramicp (NA) +* tramvs (NA) +* TriDimRegression (NA) +* TSrepr (NA) +* visa (NA) +* wally (NA) +* zen4R (NA) diff --git a/revdep/failures.md b/revdep/failures.md index 9a2073633..f22f2bc89 100644 --- a/revdep/failures.md +++ b/revdep/failures.md @@ -1 +1,10540 @@ -*Wow, no problems at all. :)* \ No newline at end of file +# adjustedCurves + +
+ +* Version: 0.11.2 +* GitHub: https://github.com/RobinDenz1/adjustedCurves +* Source code: https://github.com/cran/adjustedCurves +* Date/Publication: 2024-07-29 14:30:02 UTC +* Number of recursive dependencies: 174 + +Run `revdepcheck::cloud_details(, "adjustedCurves")` for more info + +
+ +## Error before installation + +### Devel + +``` +* using log directory ‘/tmp/workdir/adjustedCurves/new/adjustedCurves.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 + GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 +* running under: Ubuntu 24.04.1 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘adjustedCurves/DESCRIPTION’ ... OK +... +--- finished re-building ‘plot_customization.rmd’ + +SUMMARY: processing the following file failed: + ‘introduction.Rmd’ + +Error: Vignette re-building failed. +Execution halted + +* DONE +Status: 2 ERRORs, 1 WARNING, 3 NOTEs + + + + + +``` +### CRAN + +``` +* using log directory ‘/tmp/workdir/adjustedCurves/old/adjustedCurves.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 + GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 +* running under: Ubuntu 24.04.1 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘adjustedCurves/DESCRIPTION’ ... OK +... +--- finished re-building ‘plot_customization.rmd’ + +SUMMARY: processing the following file failed: + ‘introduction.Rmd’ + +Error: Vignette re-building failed. +Execution halted + +* DONE +Status: 2 ERRORs, 1 WARNING, 3 NOTEs + + + + + +``` +# ai + +
+ +* Version: NA +* GitHub: NA +* Source code: https://github.com/cran/ai +* Number of recursive dependencies: 44 + +Run `revdepcheck::cloud_details(, "ai")` for more info + +
+ +## Error before installation + +### Devel + +``` + + + + + + +``` +### CRAN + +``` + + + + + + +``` +# aorsf + +
+ +* Version: 0.1.5 +* GitHub: https://github.com/ropensci/aorsf +* Source code: https://github.com/cran/aorsf +* Date/Publication: 2024-05-30 03:40:02 UTC +* Number of recursive dependencies: 184 + +Run `revdepcheck::cloud_details(, "aorsf")` for more info + +
+ +## Error before installation + +### Devel + +``` +* using log directory ‘/tmp/workdir/aorsf/new/aorsf.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 + GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 +* running under: Ubuntu 24.04.1 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘aorsf/DESCRIPTION’ ... OK +... +* checking for unstated dependencies in vignettes ... OK +* checking package vignettes in ‘inst/doc’ ... OK +* checking running R code from vignettes ... OK + ‘aorsf.Rmd’ using ‘UTF-8’... OK + ‘fast.Rmd’ using ‘UTF-8’... OK + ‘oobag.Rmd’ using ‘UTF-8’... OK + ‘pd.Rmd’ using ‘UTF-8’... OK +* checking re-building of vignette outputs ... OK +* DONE +Status: 1 NOTE + + + + + +``` +### CRAN + +``` +* using log directory ‘/tmp/workdir/aorsf/old/aorsf.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 + GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 +* running under: Ubuntu 24.04.1 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘aorsf/DESCRIPTION’ ... OK +... +* checking for unstated dependencies in vignettes ... OK +* checking package vignettes in ‘inst/doc’ ... OK +* checking running R code from vignettes ... OK + ‘aorsf.Rmd’ using ‘UTF-8’... OK + ‘fast.Rmd’ using ‘UTF-8’... OK + ‘oobag.Rmd’ using ‘UTF-8’... OK + ‘pd.Rmd’ using ‘UTF-8’... OK +* checking re-building of vignette outputs ... OK +* DONE +Status: 1 NOTE + + + + + +``` +# apollo + +
+ +* Version: 0.3.4 +* GitHub: NA +* Source code: https://github.com/cran/apollo +* Date/Publication: 2024-10-01 21:30:08 UTC +* Number of recursive dependencies: 78 + +Run `revdepcheck::cloud_details(, "apollo")` for more info + +
+ +## In both + +* checking whether package ‘apollo’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/apollo/new/apollo.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘apollo’ ... +** package ‘apollo’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I'/usr/local/lib/R/site-library/RcppEigen/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +In file included from /usr/local/lib/R/site-library/RcppEigen/include/Eigen/Core:205, + from /usr/local/lib/R/site-library/RcppEigen/include/Eigen/Dense:1, + from /usr/local/lib/R/site-library/RcppEigen/include/RcppEigenForward.h:28, + from /usr/local/lib/R/site-library/RcppEigen/include/RcppEigen.h:25, +... +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘apollo’ +* removing ‘/tmp/workdir/apollo/new/apollo.Rcheck/apollo’ + + +``` +### CRAN + +``` +* installing *source* package ‘apollo’ ... +** package ‘apollo’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I'/usr/local/lib/R/site-library/RcppEigen/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +In file included from /usr/local/lib/R/site-library/RcppEigen/include/Eigen/Core:205, + from /usr/local/lib/R/site-library/RcppEigen/include/Eigen/Dense:1, + from /usr/local/lib/R/site-library/RcppEigen/include/RcppEigenForward.h:28, + from /usr/local/lib/R/site-library/RcppEigen/include/RcppEigen.h:25, +... +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘apollo’ +* removing ‘/tmp/workdir/apollo/old/apollo.Rcheck/apollo’ + + +``` +# arealDB + +
+ +* Version: 0.6.3 +* GitHub: https://github.com/luckinet/arealDB +* Source code: https://github.com/cran/arealDB +* Date/Publication: 2023-07-03 10:00:02 UTC +* Number of recursive dependencies: 109 + +Run `revdepcheck::cloud_details(, "arealDB")` for more info + +
+ +## In both + +* checking whether package ‘arealDB’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/arealDB/new/arealDB.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘arealDB’ ... +** package ‘arealDB’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** inst +** byte-compile and prepare package for lazy loading +Error in dyn.load(file, DLLpath = DLLpath, ...) : + unable to load shared object '/usr/local/lib/R/site-library/redland/libs/redland.so': + librdf.so.0: cannot open shared object file: No such file or directory +Calls: ... asNamespace -> loadNamespace -> library.dynam -> dyn.load +Execution halted +ERROR: lazy loading failed for package ‘arealDB’ +* removing ‘/tmp/workdir/arealDB/new/arealDB.Rcheck/arealDB’ + + +``` +### CRAN + +``` +* installing *source* package ‘arealDB’ ... +** package ‘arealDB’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** inst +** byte-compile and prepare package for lazy loading +Error in dyn.load(file, DLLpath = DLLpath, ...) : + unable to load shared object '/usr/local/lib/R/site-library/redland/libs/redland.so': + librdf.so.0: cannot open shared object file: No such file or directory +Calls: ... asNamespace -> loadNamespace -> library.dynam -> dyn.load +Execution halted +ERROR: lazy loading failed for package ‘arealDB’ +* removing ‘/tmp/workdir/arealDB/old/arealDB.Rcheck/arealDB’ + + +``` +# assessor + +
+ +* Version: 1.1.0 +* GitHub: https://github.com/jhlee1408/assessor +* Source code: https://github.com/cran/assessor +* Date/Publication: 2024-04-03 04:23:02 UTC +* Number of recursive dependencies: 106 + +Run `revdepcheck::cloud_details(, "assessor")` for more info + +
+ +## In both + +* checking whether package ‘assessor’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/assessor/new/assessor.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘assessor’ ... +** package ‘assessor’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘assessor’ +* removing ‘/tmp/workdir/assessor/new/assessor.Rcheck/assessor’ + + +``` +### CRAN + +``` +* installing *source* package ‘assessor’ ... +** package ‘assessor’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘assessor’ +* removing ‘/tmp/workdir/assessor/old/assessor.Rcheck/assessor’ + + +``` +# atom4R + +
+ +* Version: 0.3-3 +* GitHub: https://github.com/eblondel/atom4R +* Source code: https://github.com/cran/atom4R +* Date/Publication: 2022-11-18 14:40:15 UTC +* Number of recursive dependencies: 70 + +Run `revdepcheck::cloud_details(, "atom4R")` for more info + +
+ +## In both + +* checking whether package ‘atom4R’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/atom4R/new/atom4R.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘atom4R’ ... +** package ‘atom4R’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** inst +** byte-compile and prepare package for lazy loading +Error in dyn.load(file, DLLpath = DLLpath, ...) : + unable to load shared object '/usr/local/lib/R/site-library/redland/libs/redland.so': + librdf.so.0: cannot open shared object file: No such file or directory +Calls: ... asNamespace -> loadNamespace -> library.dynam -> dyn.load +Execution halted +ERROR: lazy loading failed for package ‘atom4R’ +* removing ‘/tmp/workdir/atom4R/new/atom4R.Rcheck/atom4R’ + + +``` +### CRAN + +``` +* installing *source* package ‘atom4R’ ... +** package ‘atom4R’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** inst +** byte-compile and prepare package for lazy loading +Error in dyn.load(file, DLLpath = DLLpath, ...) : + unable to load shared object '/usr/local/lib/R/site-library/redland/libs/redland.so': + librdf.so.0: cannot open shared object file: No such file or directory +Calls: ... asNamespace -> loadNamespace -> library.dynam -> dyn.load +Execution halted +ERROR: lazy loading failed for package ‘atom4R’ +* removing ‘/tmp/workdir/atom4R/old/atom4R.Rcheck/atom4R’ + + +``` +# BANAM + +
+ +* Version: 0.2.1 +* GitHub: NA +* Source code: https://github.com/cran/BANAM +* Date/Publication: 2024-06-20 10:30:02 UTC +* Number of recursive dependencies: 95 + +Run `revdepcheck::cloud_details(, "BANAM")` for more info + +
+ +## In both + +* checking whether package ‘BANAM’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/BANAM/new/BANAM.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘BANAM’ ... +** package ‘BANAM’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** byte-compile and prepare package for lazy loading +Error: package or namespace load failed for ‘BFpack’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Execution halted +ERROR: lazy loading failed for package ‘BANAM’ +* removing ‘/tmp/workdir/BANAM/new/BANAM.Rcheck/BANAM’ + + +``` +### CRAN + +``` +* installing *source* package ‘BANAM’ ... +** package ‘BANAM’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** byte-compile and prepare package for lazy loading +Error: package or namespace load failed for ‘BFpack’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Execution halted +ERROR: lazy loading failed for package ‘BANAM’ +* removing ‘/tmp/workdir/BANAM/old/BANAM.Rcheck/BANAM’ + + +``` +# bayesCT + +
+ +* Version: 0.99.3 +* GitHub: https://github.com/thevaachandereng/bayesCT +* Source code: https://github.com/cran/bayesCT +* Date/Publication: 2020-07-01 09:30:02 UTC +* Number of recursive dependencies: 121 + +Run `revdepcheck::cloud_details(, "bayesCT")` for more info + +
+ +## In both + +* checking whether package ‘bayesCT’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/bayesCT/new/bayesCT.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘bayesCT’ ... +** package ‘bayesCT’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘bayesCT’ +* removing ‘/tmp/workdir/bayesCT/new/bayesCT.Rcheck/bayesCT’ + + +``` +### CRAN + +``` +* installing *source* package ‘bayesCT’ ... +** package ‘bayesCT’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘bayesCT’ +* removing ‘/tmp/workdir/bayesCT/old/bayesCT.Rcheck/bayesCT’ + + +``` +# bayesDP + +
+ +* Version: 1.3.6 +* GitHub: https://github.com/graemeleehickey/bayesDP +* Source code: https://github.com/cran/bayesDP +* Date/Publication: 2022-01-30 22:20:02 UTC +* Number of recursive dependencies: 79 + +Run `revdepcheck::cloud_details(, "bayesDP")` for more info + +
+ +## In both + +* checking whether package ‘bayesDP’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/bayesDP/new/bayesDP.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘bayesDP’ ... +** package ‘bayesDP’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c bdplm.cpp -o bdplm.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c ppexp.cpp -o ppexp.o +g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o bayesDP.so RcppExports.o bdplm.o ppexp.o -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR +installing to /tmp/workdir/bayesDP/new/bayesDP.Rcheck/00LOCK-bayesDP/00new/bayesDP/libs +** R +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘bayesDP’ +* removing ‘/tmp/workdir/bayesDP/new/bayesDP.Rcheck/bayesDP’ + + +``` +### CRAN + +``` +* installing *source* package ‘bayesDP’ ... +** package ‘bayesDP’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c bdplm.cpp -o bdplm.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c ppexp.cpp -o ppexp.o +g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o bayesDP.so RcppExports.o bdplm.o ppexp.o -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR +installing to /tmp/workdir/bayesDP/old/bayesDP.Rcheck/00LOCK-bayesDP/00new/bayesDP/libs +** R +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘bayesDP’ +* removing ‘/tmp/workdir/bayesDP/old/bayesDP.Rcheck/bayesDP’ + + +``` +# BayesFactor + +
+ +* Version: 0.9.12-4.7 +* GitHub: https://github.com/richarddmorey/BayesFactor +* Source code: https://github.com/cran/BayesFactor +* Date/Publication: 2024-01-24 15:02:50 UTC +* Number of recursive dependencies: 72 + +Run `revdepcheck::cloud_details(, "BayesFactor")` for more info + +
+ +## In both + +* checking whether package ‘BayesFactor’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/BayesFactor/new/BayesFactor.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘BayesFactor’ ... +** package ‘BayesFactor’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -c RcppCallback.cpp -o RcppCallback.o +In file included from /usr/local/lib/R/site-library/RcppEigen/include/Eigen/Core:205, + from /usr/local/lib/R/site-library/RcppEigen/include/Eigen/Dense:1, + from /usr/local/lib/R/site-library/RcppEigen/include/RcppEigenForward.h:28, + from /usr/local/lib/R/site-library/RcppEigen/include/RcppEigen.h:25, +... +** R +** data +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘BayesFactor’ +* removing ‘/tmp/workdir/BayesFactor/new/BayesFactor.Rcheck/BayesFactor’ + + +``` +### CRAN + +``` +* installing *source* package ‘BayesFactor’ ... +** package ‘BayesFactor’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -c RcppCallback.cpp -o RcppCallback.o +In file included from /usr/local/lib/R/site-library/RcppEigen/include/Eigen/Core:205, + from /usr/local/lib/R/site-library/RcppEigen/include/Eigen/Dense:1, + from /usr/local/lib/R/site-library/RcppEigen/include/RcppEigenForward.h:28, + from /usr/local/lib/R/site-library/RcppEigen/include/RcppEigen.h:25, +... +** R +** data +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘BayesFactor’ +* removing ‘/tmp/workdir/BayesFactor/old/BayesFactor.Rcheck/BayesFactor’ + + +``` +# bbknnR + +
+ +* Version: 1.1.1 +* GitHub: https://github.com/ycli1995/bbknnR +* Source code: https://github.com/cran/bbknnR +* Date/Publication: 2024-02-13 10:20:03 UTC +* Number of recursive dependencies: 162 + +Run `revdepcheck::cloud_details(, "bbknnR")` for more info + +
+ +## In both + +* checking whether package ‘bbknnR’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/bbknnR/new/bbknnR.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘bbknnR’ ... +** package ‘bbknnR’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c data_manipulation.cpp -o data_manipulation.o +g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o bbknnR.so RcppExports.o data_manipulation.o -L/opt/R/4.3.1/lib/R/lib -lR +installing to /tmp/workdir/bbknnR/new/bbknnR.Rcheck/00LOCK-bbknnR/00new/bbknnR/libs +** R +... +Warning: namespace ‘Seurat’ is not available and has been replaced +by .GlobalEnv when processing object ‘panc8_small’ +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.4 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘bbknnR’ +* removing ‘/tmp/workdir/bbknnR/new/bbknnR.Rcheck/bbknnR’ + + +``` +### CRAN + +``` +* installing *source* package ‘bbknnR’ ... +** package ‘bbknnR’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c data_manipulation.cpp -o data_manipulation.o +g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o bbknnR.so RcppExports.o data_manipulation.o -L/opt/R/4.3.1/lib/R/lib -lR +installing to /tmp/workdir/bbknnR/old/bbknnR.Rcheck/00LOCK-bbknnR/00new/bbknnR/libs +** R +... +Warning: namespace ‘Seurat’ is not available and has been replaced +by .GlobalEnv when processing object ‘panc8_small’ +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.4 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘bbknnR’ +* removing ‘/tmp/workdir/bbknnR/old/bbknnR.Rcheck/bbknnR’ + + +``` +# BCClong + +
+ +* Version: 1.0.3 +* GitHub: NA +* Source code: https://github.com/cran/BCClong +* Date/Publication: 2024-06-24 00:00:02 UTC +* Number of recursive dependencies: 145 + +Run `revdepcheck::cloud_details(, "BCClong")` for more info + +
+ +## In both + +* checking whether package ‘BCClong’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/BCClong/new/BCClong.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘BCClong’ ... +** package ‘BCClong’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c BCC.cpp -o BCC.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c Likelihood.cpp -o Likelihood.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c c_which.cpp -o c_which.o +g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o BCClong.so BCC.o Likelihood.o RcppExports.o c_which.o -fopenmp -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR +... +** R +** data +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘BCClong’ +* removing ‘/tmp/workdir/BCClong/new/BCClong.Rcheck/BCClong’ + + +``` +### CRAN + +``` +* installing *source* package ‘BCClong’ ... +** package ‘BCClong’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c BCC.cpp -o BCC.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c Likelihood.cpp -o Likelihood.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c c_which.cpp -o c_which.o +g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o BCClong.so BCC.o Likelihood.o RcppExports.o c_which.o -fopenmp -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR +... +** R +** data +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘BCClong’ +* removing ‘/tmp/workdir/BCClong/old/BCClong.Rcheck/BCClong’ + + +``` +# BFpack + +
+ +* Version: 1.3.0 +* GitHub: https://github.com/jomulder/BFpack +* Source code: https://github.com/cran/BFpack +* Date/Publication: 2024-06-19 10:50:02 UTC +* Number of recursive dependencies: 105 + +Run `revdepcheck::cloud_details(, "BFpack")` for more info + +
+ +## In both + +* checking whether package ‘BFpack’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/BFpack/new/BFpack.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘BFpack’ ... +** package ‘BFpack’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C compiler: ‘gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ +using Fortran compiler: ‘GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ +gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c BFpack_init.c -o BFpack_init.o +gfortran -fpic -g -O2 -c bct_mixedordinal.f90 -o bct_mixedordinal.o +gfortran -fpic -g -O2 -c bct_prior.f90 -o bct_prior.o +gcc -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o BFpack.so BFpack_init.o bct_mixedordinal.o bct_prior.o -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR +... +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘BFpack’ +* removing ‘/tmp/workdir/BFpack/new/BFpack.Rcheck/BFpack’ + + +``` +### CRAN + +``` +* installing *source* package ‘BFpack’ ... +** package ‘BFpack’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C compiler: ‘gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ +using Fortran compiler: ‘GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ +gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c BFpack_init.c -o BFpack_init.o +gfortran -fpic -g -O2 -c bct_mixedordinal.f90 -o bct_mixedordinal.o +gfortran -fpic -g -O2 -c bct_prior.f90 -o bct_prior.o +gcc -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o BFpack.so BFpack_init.o bct_mixedordinal.o bct_prior.o -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR +... +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘BFpack’ +* removing ‘/tmp/workdir/BFpack/old/BFpack.Rcheck/BFpack’ + + +``` +# BGGM + +
+ +* Version: 2.1.3 +* GitHub: https://github.com/donaldRwilliams/BGGM +* Source code: https://github.com/cran/BGGM +* Date/Publication: 2024-07-05 20:30:02 UTC +* Number of recursive dependencies: 194 + +Run `revdepcheck::cloud_details(, "BGGM")` for more info + +
+ +## In both + +* checking whether package ‘BGGM’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/BGGM/new/BGGM.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘BGGM’ ... +** package ‘BGGM’ successfully unpacked and MD5 sums checked +** using staged installation +checking whether the C++ compiler works... yes +checking for C++ compiler default output file name... a.out +checking for suffix of executables... +checking whether we are cross compiling... no +checking for suffix of object files... o +checking whether we are using the GNU C++ compiler... yes +checking whether g++ -std=gnu++17 accepts -g... yes +... +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘BGGM’ +* removing ‘/tmp/workdir/BGGM/new/BGGM.Rcheck/BGGM’ + + +``` +### CRAN + +``` +* installing *source* package ‘BGGM’ ... +** package ‘BGGM’ successfully unpacked and MD5 sums checked +** using staged installation +checking whether the C++ compiler works... yes +checking for C++ compiler default output file name... a.out +checking for suffix of executables... +checking whether we are cross compiling... no +checking for suffix of object files... o +checking whether we are using the GNU C++ compiler... yes +checking whether g++ -std=gnu++17 accepts -g... yes +... +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘BGGM’ +* removing ‘/tmp/workdir/BGGM/old/BGGM.Rcheck/BGGM’ + + +``` +# bmgarch + +
+ +* Version: 2.0.0 +* GitHub: https://github.com/ph-rast/bmgarch +* Source code: https://github.com/cran/bmgarch +* Date/Publication: 2023-09-12 00:40:02 UTC +* Number of recursive dependencies: 81 + +Run `revdepcheck::cloud_details(, "bmgarch")` for more info + +
+ +## Newly broken + +* checking whether package ‘bmgarch’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/bmgarch/new/bmgarch.Rcheck/00install.out’ for details. + ``` + +## Newly fixed + +* checking installed package size ... NOTE + ``` + installed size is 304.9Mb + sub-directories of 1Mb or more: + libs 304.1Mb + ``` + +* checking for GNU extensions in Makefiles ... NOTE + ``` + GNU make is a SystemRequirements. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘bmgarch’ ... +** package ‘bmgarch’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ +using C++17 + + +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I"../inst/include" -I"/usr/local/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/usr/local/lib/R/site-library/BH/include' -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppParallel/include' -I'/usr/local/lib/R/site-library/RcppEigen/include' -I'/usr/local/lib/R/site-library/rstan/include' -I'/usr/local/lib/R/site-library/StanHeaders/include' -I/usr/local/include -I'/usr/local/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +In file included from /usr/local/lib/R/site-library/RcppEigen/include/Eigen/Core:205, +... +/usr/local/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:0: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_DCCMGARCH_namespace::model_DCCMGARCH; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’ +/usr/local/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:0: required from here +/usr/local/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] + 654 | return internal::first_aligned::alignment),Derived>(m); + | ^~~~~~~~~ +g++: fatal error: Killed signal terminated program cc1plus +compilation terminated. +make: *** [/opt/R/4.3.1/lib/R/etc/Makeconf:198: stanExports_DCCMGARCH.o] Error 1 +ERROR: compilation failed for package ‘bmgarch’ +* removing ‘/tmp/workdir/bmgarch/new/bmgarch.Rcheck/bmgarch’ + + +``` +### CRAN + +``` +* installing *source* package ‘bmgarch’ ... +** package ‘bmgarch’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ +using C++17 + + +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I"../inst/include" -I"/usr/local/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/usr/local/lib/R/site-library/BH/include' -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppParallel/include' -I'/usr/local/lib/R/site-library/RcppEigen/include' -I'/usr/local/lib/R/site-library/rstan/include' -I'/usr/local/lib/R/site-library/StanHeaders/include' -I/usr/local/include -I'/usr/local/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +In file included from /usr/local/lib/R/site-library/RcppEigen/include/Eigen/Core:205, +... +** inst +** byte-compile and prepare package for lazy loading +** help +*** installing help indices +** building package indices +** testing if installed package can be loaded from temporary location +** checking absolute paths in shared objects and dynamic libraries +** testing if installed package can be loaded from final location +** testing if installed package keeps a record of temporary installation path +* DONE (bmgarch) + + +``` +# bnnSurvival + +
+ +* Version: 0.1.5 +* GitHub: NA +* Source code: https://github.com/cran/bnnSurvival +* Date/Publication: 2017-05-10 15:37:49 UTC +* Number of recursive dependencies: 117 + +Run `revdepcheck::cloud_details(, "bnnSurvival")` for more info + +
+ +## Error before installation + +### Devel + +``` +* using log directory ‘/tmp/workdir/bnnSurvival/new/bnnSurvival.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 + GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 +* running under: Ubuntu 24.04.1 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘bnnSurvival/DESCRIPTION’ ... OK +... + 5. └─base::loadNamespace(x) + 6. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL) + 7. └─base (local) withOneRestart(expr, restarts[[1L]]) + 8. └─base (local) doWithOneRestart(return(expr), restart) + + [ FAIL 1 | WARN 0 | SKIP 0 | PASS 5 ] + Error: Test failures + Execution halted +* DONE +Status: 1 ERROR + + + + + +``` +### CRAN + +``` +* using log directory ‘/tmp/workdir/bnnSurvival/old/bnnSurvival.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 + GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 +* running under: Ubuntu 24.04.1 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘bnnSurvival/DESCRIPTION’ ... OK +... + 5. └─base::loadNamespace(x) + 6. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL) + 7. └─base (local) withOneRestart(expr, restarts[[1L]]) + 8. └─base (local) doWithOneRestart(return(expr), restart) + + [ FAIL 1 | WARN 0 | SKIP 0 | PASS 5 ] + Error: Test failures + Execution halted +* DONE +Status: 1 ERROR + + + + + +``` +# BSTZINB + +
+ +* Version: 1.0.1 +* GitHub: https://github.com/SumanM47/BSTZINB +* Source code: https://github.com/cran/BSTZINB +* Date/Publication: 2024-10-31 22:50:02 UTC +* Number of recursive dependencies: 110 + +Run `revdepcheck::cloud_details(, "BSTZINB")` for more info + +
+ +## In both + +* checking whether package ‘BSTZINB’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/BSTZINB/new/BSTZINB.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘BSTZINB’ ... +** package ‘BSTZINB’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘BSTZINB’ +* removing ‘/tmp/workdir/BSTZINB/new/BSTZINB.Rcheck/BSTZINB’ + + +``` +### CRAN + +``` +* installing *source* package ‘BSTZINB’ ... +** package ‘BSTZINB’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘BSTZINB’ +* removing ‘/tmp/workdir/BSTZINB/old/BSTZINB.Rcheck/BSTZINB’ + + +``` +# BuyseTest + +
+ +* Version: 3.0.5 +* GitHub: https://github.com/bozenne/BuyseTest +* Source code: https://github.com/cran/BuyseTest +* Date/Publication: 2024-10-13 21:40:02 UTC +* Number of recursive dependencies: 132 + +Run `revdepcheck::cloud_details(, "BuyseTest")` for more info + +
+ +## Error before installation + +### Devel + +``` +* using log directory ‘/tmp/workdir/BuyseTest/new/BuyseTest.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 + GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 +* running under: Ubuntu 24.04.1 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘BuyseTest/DESCRIPTION’ ... OK +... +* this is package ‘BuyseTest’ version ‘3.0.5’ +* package encoding: UTF-8 +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Package required but not available: ‘riskRegression’ + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + + + +``` +### CRAN + +``` +* using log directory ‘/tmp/workdir/BuyseTest/old/BuyseTest.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 + GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 +* running under: Ubuntu 24.04.1 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘BuyseTest/DESCRIPTION’ ... OK +... +* this is package ‘BuyseTest’ version ‘3.0.5’ +* package encoding: UTF-8 +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Package required but not available: ‘riskRegression’ + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + + + +``` +# CACIMAR + +
+ +* Version: 1.0.0 +* GitHub: https://github.com/jiang-junyao/CACIMAR +* Source code: https://github.com/cran/CACIMAR +* Date/Publication: 2022-05-18 08:20:02 UTC +* Number of recursive dependencies: 161 + +Run `revdepcheck::cloud_details(, "CACIMAR")` for more info + +
+ +## In both + +* checking whether package ‘CACIMAR’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/CACIMAR/new/CACIMAR.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘CACIMAR’ ... +** package ‘CACIMAR’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error: package or namespace load failed for ‘SeuratObject’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): + namespace ‘Matrix’ 1.5-4.1 is being loaded, but >= 1.6.4 is required +Execution halted +ERROR: lazy loading failed for package ‘CACIMAR’ +* removing ‘/tmp/workdir/CACIMAR/new/CACIMAR.Rcheck/CACIMAR’ + + +``` +### CRAN + +``` +* installing *source* package ‘CACIMAR’ ... +** package ‘CACIMAR’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error: package or namespace load failed for ‘SeuratObject’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): + namespace ‘Matrix’ 1.5-4.1 is being loaded, but >= 1.6.4 is required +Execution halted +ERROR: lazy loading failed for package ‘CACIMAR’ +* removing ‘/tmp/workdir/CACIMAR/old/CACIMAR.Rcheck/CACIMAR’ + + +``` +# censored + +
+ +* Version: 0.3.2 +* GitHub: https://github.com/tidymodels/censored +* Source code: https://github.com/cran/censored +* Date/Publication: 2024-06-11 18:10:02 UTC +* Number of recursive dependencies: 163 + +Run `revdepcheck::cloud_details(, "censored")` for more info + +
+ +## Error before installation + +### Devel + +``` +* using log directory ‘/tmp/workdir/censored/new/censored.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 + GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 +* running under: Ubuntu 24.04.1 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘censored/DESCRIPTION’ ... OK +... +* this is package ‘censored’ version ‘0.3.2’ +* package encoding: UTF-8 +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Package required and available but unsuitable version: ‘survival’ + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + + + +``` +### CRAN + +``` +* using log directory ‘/tmp/workdir/censored/old/censored.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 + GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 +* running under: Ubuntu 24.04.1 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘censored/DESCRIPTION’ ... OK +... +* this is package ‘censored’ version ‘0.3.2’ +* package encoding: UTF-8 +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Package required and available but unsuitable version: ‘survival’ + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + + + +``` +# Certara.VPCResults + +
+ +* Version: 3.0.1 +* GitHub: NA +* Source code: https://github.com/cran/Certara.VPCResults +* Date/Publication: 2024-10-10 18:50:06 UTC +* Number of recursive dependencies: 141 + +Run `revdepcheck::cloud_details(, "Certara.VPCResults")` for more info + +
+ +## In both + +* checking whether package ‘Certara.VPCResults’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/Certara.VPCResults/new/Certara.VPCResults.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘Certara.VPCResults’ ... +** package ‘Certara.VPCResults’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘Certara.VPCResults’ +* removing ‘/tmp/workdir/Certara.VPCResults/new/Certara.VPCResults.Rcheck/Certara.VPCResults’ + + +``` +### CRAN + +``` +* installing *source* package ‘Certara.VPCResults’ ... +** package ‘Certara.VPCResults’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘Certara.VPCResults’ +* removing ‘/tmp/workdir/Certara.VPCResults/old/Certara.VPCResults.Rcheck/Certara.VPCResults’ + + +``` +# CGPfunctions + +
+ +* Version: 0.6.3 +* GitHub: https://github.com/ibecav/CGPfunctions +* Source code: https://github.com/cran/CGPfunctions +* Date/Publication: 2020-11-12 14:50:09 UTC +* Number of recursive dependencies: 148 + +Run `revdepcheck::cloud_details(, "CGPfunctions")` for more info + +
+ +## In both + +* checking whether package ‘CGPfunctions’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/CGPfunctions/new/CGPfunctions.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘CGPfunctions’ ... +** package ‘CGPfunctions’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘CGPfunctions’ +* removing ‘/tmp/workdir/CGPfunctions/new/CGPfunctions.Rcheck/CGPfunctions’ + + +``` +### CRAN + +``` +* installing *source* package ‘CGPfunctions’ ... +** package ‘CGPfunctions’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘CGPfunctions’ +* removing ‘/tmp/workdir/CGPfunctions/old/CGPfunctions.Rcheck/CGPfunctions’ + + +``` +# chipPCR + +
+ +* Version: 1.0-2 +* GitHub: https://github.com/PCRuniversum/chipPCR +* Source code: https://github.com/cran/chipPCR +* Date/Publication: 2021-03-05 07:50:03 UTC +* Number of recursive dependencies: 141 + +Run `revdepcheck::cloud_details(, "chipPCR")` for more info + +
+ +## In both + +* checking whether package ‘chipPCR’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/chipPCR/new/chipPCR.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘chipPCR’ ... +** package ‘chipPCR’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘chipPCR’ +* removing ‘/tmp/workdir/chipPCR/new/chipPCR.Rcheck/chipPCR’ + + +``` +### CRAN + +``` +* installing *source* package ‘chipPCR’ ... +** package ‘chipPCR’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘chipPCR’ +* removing ‘/tmp/workdir/chipPCR/old/chipPCR.Rcheck/chipPCR’ + + +``` +# cmmr + +
+ +* Version: NA +* GitHub: NA +* Source code: https://github.com/cran/cmmr +* Number of recursive dependencies: 36 + +Run `revdepcheck::cloud_details(, "cmmr")` for more info + +
+ +## Error before installation + +### Devel + +``` + + + + + + +``` +### CRAN + +``` + + + + + + +``` +# COMBO + +
+ +* Version: 1.2.0 +* GitHub: NA +* Source code: https://github.com/cran/COMBO +* Date/Publication: 2024-10-30 15:50:02 UTC +* Number of recursive dependencies: 122 + +Run `revdepcheck::cloud_details(, "COMBO")` for more info + +
+ +## In both + +* checking whether package ‘COMBO’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/COMBO/new/COMBO.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘COMBO’ ... +** package ‘COMBO’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘COMBO’ +* removing ‘/tmp/workdir/COMBO/new/COMBO.Rcheck/COMBO’ + + +``` +### CRAN + +``` +* installing *source* package ‘COMBO’ ... +** package ‘COMBO’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘COMBO’ +* removing ‘/tmp/workdir/COMBO/old/COMBO.Rcheck/COMBO’ + + +``` +# contsurvplot + +
+ +* Version: 0.2.1 +* GitHub: https://github.com/RobinDenz1/contsurvplot +* Source code: https://github.com/cran/contsurvplot +* Date/Publication: 2023-08-15 08:00:03 UTC +* Number of recursive dependencies: 156 + +Run `revdepcheck::cloud_details(, "contsurvplot")` for more info + +
+ +## Error before installation + +### Devel + +``` +* using log directory ‘/tmp/workdir/contsurvplot/new/contsurvplot.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 + GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 +* running under: Ubuntu 24.04.1 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘contsurvplot/DESCRIPTION’ ... OK +... +* this is package ‘contsurvplot’ version ‘0.2.1’ +* package encoding: UTF-8 +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Package required but not available: ‘riskRegression’ + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + + + +``` +### CRAN + +``` +* using log directory ‘/tmp/workdir/contsurvplot/old/contsurvplot.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 + GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 +* running under: Ubuntu 24.04.1 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘contsurvplot/DESCRIPTION’ ... OK +... +* this is package ‘contsurvplot’ version ‘0.2.1’ +* package encoding: UTF-8 +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Package required but not available: ‘riskRegression’ + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + + + +``` +# counterfactuals + +
+ +* Version: 0.1.6 +* GitHub: https://github.com/dandls/counterfactuals +* Source code: https://github.com/cran/counterfactuals +* Date/Publication: 2024-10-17 12:00:06 UTC +* Number of recursive dependencies: 217 + +Run `revdepcheck::cloud_details(, "counterfactuals")` for more info + +
+ +## Error before installation + +### Devel + +``` +* using log directory ‘/tmp/workdir/counterfactuals/new/counterfactuals.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 + GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 +* running under: Ubuntu 24.04.1 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘counterfactuals/DESCRIPTION’ ... OK +... +* checking examples ... OK +* checking for unstated dependencies in vignettes ... OK +* checking package vignettes in ‘inst/doc’ ... OK +* checking running R code from vignettes ... NONE + ‘how-to-add-new-cf-methods.html.asis’ using ‘UTF-8’... OK + ‘introduction.html.asis’ using ‘UTF-8’... OK + ‘other_models.html.asis’ using ‘UTF-8’... OK +* checking re-building of vignette outputs ... OK +* DONE +Status: 1 NOTE + + + + + +``` +### CRAN + +``` +* using log directory ‘/tmp/workdir/counterfactuals/old/counterfactuals.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 + GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 +* running under: Ubuntu 24.04.1 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘counterfactuals/DESCRIPTION’ ... OK +... +* checking examples ... OK +* checking for unstated dependencies in vignettes ... OK +* checking package vignettes in ‘inst/doc’ ... OK +* checking running R code from vignettes ... NONE + ‘how-to-add-new-cf-methods.html.asis’ using ‘UTF-8’... OK + ‘introduction.html.asis’ using ‘UTF-8’... OK + ‘other_models.html.asis’ using ‘UTF-8’... OK +* checking re-building of vignette outputs ... OK +* DONE +Status: 1 NOTE + + + + + +``` +# CRMetrics + +
+ +* Version: 0.3.0 +* GitHub: https://github.com/khodosevichlab/CRMetrics +* Source code: https://github.com/cran/CRMetrics +* Date/Publication: 2023-09-01 09:00:06 UTC +* Number of recursive dependencies: 239 + +Run `revdepcheck::cloud_details(, "CRMetrics")` for more info + +
+ +## In both + +* checking whether package ‘CRMetrics’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/CRMetrics/new/CRMetrics.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘CRMetrics’ ... +** package ‘CRMetrics’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘CRMetrics’ +* removing ‘/tmp/workdir/CRMetrics/new/CRMetrics.Rcheck/CRMetrics’ + + +``` +### CRAN + +``` +* installing *source* package ‘CRMetrics’ ... +** package ‘CRMetrics’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘CRMetrics’ +* removing ‘/tmp/workdir/CRMetrics/old/CRMetrics.Rcheck/CRMetrics’ + + +``` +# ctsem + +
+ +* Version: 3.10.1 +* GitHub: https://github.com/cdriveraus/ctsem +* Source code: https://github.com/cran/ctsem +* Date/Publication: 2024-08-19 14:40:06 UTC +* Number of recursive dependencies: 157 + +Run `revdepcheck::cloud_details(, "ctsem")` for more info + +
+ +## In both + +* checking whether package ‘ctsem’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/ctsem/new/ctsem.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘ctsem’ ... +** package ‘ctsem’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ +using C++17 + + +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I"../inst/include" -I"/usr/local/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/usr/local/lib/R/site-library/BH/include' -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppEigen/include' -I'/usr/local/lib/R/site-library/RcppParallel/include' -I'/usr/local/lib/R/site-library/rstan/include' -I'/usr/local/lib/R/site-library/StanHeaders/include' -I/usr/local/include -I'/usr/local/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +In file included from /usr/local/lib/R/site-library/RcppEigen/include/Eigen/Core:205, +... +/usr/local/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:0: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_ctsm_namespace::model_ctsm; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’ +/usr/local/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:0: required from here +/usr/local/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] + 654 | return internal::first_aligned::alignment),Derived>(m); + | ^~~~~~~~~ +g++: fatal error: Killed signal terminated program cc1plus +compilation terminated. +make: *** [/opt/R/4.3.1/lib/R/etc/Makeconf:198: stanExports_ctsm.o] Error 1 +ERROR: compilation failed for package ‘ctsem’ +* removing ‘/tmp/workdir/ctsem/new/ctsem.Rcheck/ctsem’ + + +``` +### CRAN + +``` +* installing *source* package ‘ctsem’ ... +** package ‘ctsem’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ +using C++17 + + +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I"../inst/include" -I"/usr/local/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/usr/local/lib/R/site-library/BH/include' -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppEigen/include' -I'/usr/local/lib/R/site-library/RcppParallel/include' -I'/usr/local/lib/R/site-library/rstan/include' -I'/usr/local/lib/R/site-library/StanHeaders/include' -I/usr/local/include -I'/usr/local/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +In file included from /usr/local/lib/R/site-library/RcppEigen/include/Eigen/Core:205, +... +/usr/local/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:0: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_ctsm_namespace::model_ctsm; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’ +/usr/local/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:0: required from here +/usr/local/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] + 654 | return internal::first_aligned::alignment),Derived>(m); + | ^~~~~~~~~ +g++: fatal error: Killed signal terminated program cc1plus +compilation terminated. +make: *** [/opt/R/4.3.1/lib/R/etc/Makeconf:198: stanExports_ctsm.o] Error 1 +ERROR: compilation failed for package ‘ctsem’ +* removing ‘/tmp/workdir/ctsem/old/ctsem.Rcheck/ctsem’ + + +``` +# dartR.base + +
+ +* Version: 0.98 +* GitHub: NA +* Source code: https://github.com/cran/dartR.base +* Date/Publication: 2024-09-19 13:20:02 UTC +* Number of recursive dependencies: 285 + +Run `revdepcheck::cloud_details(, "dartR.base")` for more info + +
+ +## Error before installation + +### Devel + +``` +* using log directory ‘/tmp/workdir/dartR.base/new/dartR.base.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 + GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 +* running under: Ubuntu 24.04.1 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘dartR.base/DESCRIPTION’ ... OK +... +* this is package ‘dartR.base’ version ‘0.98’ +* package encoding: UTF-8 +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Package required but not available: ‘SNPassoc’ + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + + + +``` +### CRAN + +``` +* using log directory ‘/tmp/workdir/dartR.base/old/dartR.base.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 + GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 +* running under: Ubuntu 24.04.1 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘dartR.base/DESCRIPTION’ ... OK +... +* this is package ‘dartR.base’ version ‘0.98’ +* package encoding: UTF-8 +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Package required but not available: ‘SNPassoc’ + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + + + +``` +# dataone + +
+ +* Version: 2.2.2 +* GitHub: https://github.com/DataONEorg/rdataone +* Source code: https://github.com/cran/dataone +* Date/Publication: 2022-06-10 19:30:02 UTC +* Number of recursive dependencies: 63 + +Run `revdepcheck::cloud_details(, "dataone")` for more info + +
+ +## In both + +* checking whether package ‘dataone’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/dataone/new/dataone.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘dataone’ ... +** package ‘dataone’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** inst +** byte-compile and prepare package for lazy loading +Error in dyn.load(file, DLLpath = DLLpath, ...) : + unable to load shared object '/usr/local/lib/R/site-library/redland/libs/redland.so': + librdf.so.0: cannot open shared object file: No such file or directory +Calls: ... namespaceImport -> loadNamespace -> library.dynam -> dyn.load +Execution halted +ERROR: lazy loading failed for package ‘dataone’ +* removing ‘/tmp/workdir/dataone/new/dataone.Rcheck/dataone’ + + +``` +### CRAN + +``` +* installing *source* package ‘dataone’ ... +** package ‘dataone’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** inst +** byte-compile and prepare package for lazy loading +Error in dyn.load(file, DLLpath = DLLpath, ...) : + unable to load shared object '/usr/local/lib/R/site-library/redland/libs/redland.so': + librdf.so.0: cannot open shared object file: No such file or directory +Calls: ... namespaceImport -> loadNamespace -> library.dynam -> dyn.load +Execution halted +ERROR: lazy loading failed for package ‘dataone’ +* removing ‘/tmp/workdir/dataone/old/dataone.Rcheck/dataone’ + + +``` +# datapack + +
+ +* Version: 1.4.1 +* GitHub: https://github.com/ropensci/datapack +* Source code: https://github.com/cran/datapack +* Date/Publication: 2022-06-10 19:40:01 UTC +* Number of recursive dependencies: 63 + +Run `revdepcheck::cloud_details(, "datapack")` for more info + +
+ +## In both + +* checking whether package ‘datapack’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/datapack/new/datapack.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘datapack’ ... +** package ‘datapack’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** inst +** byte-compile and prepare package for lazy loading +Error in dyn.load(file, DLLpath = DLLpath, ...) : + unable to load shared object '/usr/local/lib/R/site-library/redland/libs/redland.so': + librdf.so.0: cannot open shared object file: No such file or directory +Calls: ... namespaceImport -> loadNamespace -> library.dynam -> dyn.load +Execution halted +ERROR: lazy loading failed for package ‘datapack’ +* removing ‘/tmp/workdir/datapack/new/datapack.Rcheck/datapack’ + + +``` +### CRAN + +``` +* installing *source* package ‘datapack’ ... +** package ‘datapack’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** inst +** byte-compile and prepare package for lazy loading +Error in dyn.load(file, DLLpath = DLLpath, ...) : + unable to load shared object '/usr/local/lib/R/site-library/redland/libs/redland.so': + librdf.so.0: cannot open shared object file: No such file or directory +Calls: ... namespaceImport -> loadNamespace -> library.dynam -> dyn.load +Execution halted +ERROR: lazy loading failed for package ‘datapack’ +* removing ‘/tmp/workdir/datapack/old/datapack.Rcheck/datapack’ + + +``` +# deeptrafo + +
+ +* Version: 0.1-1 +* GitHub: NA +* Source code: https://github.com/cran/deeptrafo +* Date/Publication: 2022-11-22 09:50:02 UTC +* Number of recursive dependencies: 95 + +Run `revdepcheck::cloud_details(, "deeptrafo")` for more info + +
+ +## Error before installation + +### Devel + +``` +* using log directory ‘/tmp/workdir/deeptrafo/new/deeptrafo.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 + GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 +* running under: Ubuntu 24.04.1 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘deeptrafo/DESCRIPTION’ ... OK +... +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Package required but not available: ‘mlt’ + +Packages suggested but not available for checking: 'tram', 'cotram' + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + + + +``` +### CRAN + +``` +* using log directory ‘/tmp/workdir/deeptrafo/old/deeptrafo.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 + GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 +* running under: Ubuntu 24.04.1 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘deeptrafo/DESCRIPTION’ ... OK +... +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Package required but not available: ‘mlt’ + +Packages suggested but not available for checking: 'tram', 'cotram' + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + + + +``` +# DepthProc + +
+ +* Version: 2.1.5 +* GitHub: https://github.com/zzawadz/DepthProc +* Source code: https://github.com/cran/DepthProc +* Date/Publication: 2022-02-03 20:30:02 UTC +* Number of recursive dependencies: 133 + +Run `revdepcheck::cloud_details(, "DepthProc")` for more info + +
+ +## In both + +* checking whether package ‘DepthProc’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/DepthProc/new/DepthProc.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘DepthProc’ ... +** package ‘DepthProc’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ +using C++11 +g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c Depth.cpp -o Depth.o +g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c LocationEstimators.cpp -o LocationEstimators.o +g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c LocationScaleDepth.cpp -o LocationScaleDepth.o +g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c LocationScaleDepthCPP.cpp -o LocationScaleDepthCPP.o +... +installing to /tmp/workdir/DepthProc/new/DepthProc.Rcheck/00LOCK-DepthProc/00new/DepthProc/libs +** R +** data +** inst +** byte-compile and prepare package for lazy loading +Error: package or namespace load failed for ‘np’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Execution halted +ERROR: lazy loading failed for package ‘DepthProc’ +* removing ‘/tmp/workdir/DepthProc/new/DepthProc.Rcheck/DepthProc’ + + +``` +### CRAN + +``` +* installing *source* package ‘DepthProc’ ... +** package ‘DepthProc’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ +using C++11 +g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c Depth.cpp -o Depth.o +g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c LocationEstimators.cpp -o LocationEstimators.o +g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c LocationScaleDepth.cpp -o LocationScaleDepth.o +g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c LocationScaleDepthCPP.cpp -o LocationScaleDepthCPP.o +... +installing to /tmp/workdir/DepthProc/old/DepthProc.Rcheck/00LOCK-DepthProc/00new/DepthProc/libs +** R +** data +** inst +** byte-compile and prepare package for lazy loading +Error: package or namespace load failed for ‘np’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Execution halted +ERROR: lazy loading failed for package ‘DepthProc’ +* removing ‘/tmp/workdir/DepthProc/old/DepthProc.Rcheck/DepthProc’ + + +``` +# dibble + +
+ +* Version: NA +* GitHub: NA +* Source code: https://github.com/cran/dibble +* Number of recursive dependencies: 51 + +Run `revdepcheck::cloud_details(, "dibble")` for more info + +
+ +## Error before installation + +### Devel + +``` + + + + + + +``` +### CRAN + +``` + + + + + + +``` +# drtmle + +
+ +* Version: 1.1.2 +* GitHub: https://github.com/benkeser/drtmle +* Source code: https://github.com/cran/drtmle +* Date/Publication: 2023-01-05 19:50:02 UTC +* Number of recursive dependencies: 74 + +Run `revdepcheck::cloud_details(, "drtmle")` for more info + +
+ +## In both + +* checking whether package ‘drtmle’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/drtmle/new/drtmle.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘drtmle’ ... +** package ‘drtmle’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘drtmle’ +* removing ‘/tmp/workdir/drtmle/new/drtmle.Rcheck/drtmle’ + + +``` +### CRAN + +``` +* installing *source* package ‘drtmle’ ... +** package ‘drtmle’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘drtmle’ +* removing ‘/tmp/workdir/drtmle/old/drtmle.Rcheck/drtmle’ + + +``` +# DWLS + +
+ +* Version: 0.1.0 +* GitHub: https://github.com/sistia01/DWLS +* Source code: https://github.com/cran/DWLS +* Date/Publication: 2022-05-24 09:20:01 UTC +* Number of recursive dependencies: 183 + +Run `revdepcheck::cloud_details(, "DWLS")` for more info + +
+ +## In both + +* checking whether package ‘DWLS’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/DWLS/new/DWLS.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘DWLS’ ... +** package ‘DWLS’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.4 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘DWLS’ +* removing ‘/tmp/workdir/DWLS/new/DWLS.Rcheck/DWLS’ + + +``` +### CRAN + +``` +* installing *source* package ‘DWLS’ ... +** package ‘DWLS’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.4 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘DWLS’ +* removing ‘/tmp/workdir/DWLS/old/DWLS.Rcheck/DWLS’ + + +``` +# easybgm + +
+ +* Version: 0.2.1 +* GitHub: https://github.com/KarolineHuth/easybgm +* Source code: https://github.com/cran/easybgm +* Date/Publication: 2024-10-17 08:30:02 UTC +* Number of recursive dependencies: 163 + +Run `revdepcheck::cloud_details(, "easybgm")` for more info + +
+ +## In both + +* checking whether package ‘easybgm’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/easybgm/new/easybgm.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘easybgm’ ... +** package ‘easybgm’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘easybgm’ +* removing ‘/tmp/workdir/easybgm/new/easybgm.Rcheck/easybgm’ + + +``` +### CRAN + +``` +* installing *source* package ‘easybgm’ ... +** package ‘easybgm’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘easybgm’ +* removing ‘/tmp/workdir/easybgm/old/easybgm.Rcheck/easybgm’ + + +``` +# EcoEnsemble + +
+ +* Version: 1.1.0 +* GitHub: https://github.com/CefasRepRes/EcoEnsemble +* Source code: https://github.com/cran/EcoEnsemble +* Date/Publication: 2024-08-19 17:20:06 UTC +* Number of recursive dependencies: 90 + +Run `revdepcheck::cloud_details(, "EcoEnsemble")` for more info + +
+ +## In both + +* checking whether package ‘EcoEnsemble’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/EcoEnsemble/new/EcoEnsemble.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘EcoEnsemble’ ... +** package ‘EcoEnsemble’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ +using C++17 + + +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I"../inst/include" -I"/usr/local/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/usr/local/lib/R/site-library/BH/include' -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppEigen/include' -I'/usr/local/lib/R/site-library/RcppParallel/include' -I'/usr/local/lib/R/site-library/rstan/include' -I'/usr/local/lib/R/site-library/StanHeaders/include' -I/usr/local/include -I'/usr/local/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c KF_back.cpp -o KF_back.o +In file included from /usr/local/lib/R/site-library/RcppEigen/include/Eigen/Core:205, +... +/usr/local/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:0: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_ensemble_model_hierarchical_namespace::model_ensemble_model_hierarchical; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’ +/usr/local/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:0: required from here +/usr/local/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] + 654 | return internal::first_aligned::alignment),Derived>(m); + | ^~~~~~~~~ +g++: fatal error: Killed signal terminated program cc1plus +compilation terminated. +make: *** [/opt/R/4.3.1/lib/R/etc/Makeconf:198: stanExports_ensemble_model_hierarchical.o] Error 1 +ERROR: compilation failed for package ‘EcoEnsemble’ +* removing ‘/tmp/workdir/EcoEnsemble/new/EcoEnsemble.Rcheck/EcoEnsemble’ + + +``` +### CRAN + +``` +* installing *source* package ‘EcoEnsemble’ ... +** package ‘EcoEnsemble’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ +using C++17 + + +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I"../inst/include" -I"/usr/local/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/usr/local/lib/R/site-library/BH/include' -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppEigen/include' -I'/usr/local/lib/R/site-library/RcppParallel/include' -I'/usr/local/lib/R/site-library/rstan/include' -I'/usr/local/lib/R/site-library/StanHeaders/include' -I/usr/local/include -I'/usr/local/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c KF_back.cpp -o KF_back.o +In file included from /usr/local/lib/R/site-library/RcppEigen/include/Eigen/Core:205, +... +/usr/local/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:0: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_ensemble_model_hierarchical_namespace::model_ensemble_model_hierarchical; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’ +/usr/local/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:0: required from here +/usr/local/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] + 654 | return internal::first_aligned::alignment),Derived>(m); + | ^~~~~~~~~ +g++: fatal error: Killed signal terminated program cc1plus +compilation terminated. +make: *** [/opt/R/4.3.1/lib/R/etc/Makeconf:198: stanExports_ensemble_model_hierarchical.o] Error 1 +ERROR: compilation failed for package ‘EcoEnsemble’ +* removing ‘/tmp/workdir/EcoEnsemble/old/EcoEnsemble.Rcheck/EcoEnsemble’ + + +``` +# ecolottery + +
+ +* Version: 1.0.0 +* GitHub: https://github.com/frmunoz/ecolottery +* Source code: https://github.com/cran/ecolottery +* Date/Publication: 2017-07-03 11:01:29 UTC +* Number of recursive dependencies: 87 + +Run `revdepcheck::cloud_details(, "ecolottery")` for more info + +
+ +## In both + +* checking whether package ‘ecolottery’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/ecolottery/new/ecolottery.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘ecolottery’ ... +** package ‘ecolottery’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘ecolottery’ +* removing ‘/tmp/workdir/ecolottery/new/ecolottery.Rcheck/ecolottery’ + + +``` +### CRAN + +``` +* installing *source* package ‘ecolottery’ ... +** package ‘ecolottery’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘ecolottery’ +* removing ‘/tmp/workdir/ecolottery/old/ecolottery.Rcheck/ecolottery’ + + +``` +# EdSurvey + +
+ +* Version: 4.0.7 +* GitHub: https://github.com/American-Institutes-for-Research/EdSurvey +* Source code: https://github.com/cran/EdSurvey +* Date/Publication: 2024-06-27 14:50:14 UTC +* Number of recursive dependencies: 127 + +Run `revdepcheck::cloud_details(, "EdSurvey")` for more info + +
+ +## In both + +* checking whether package ‘EdSurvey’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/EdSurvey/new/EdSurvey.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘EdSurvey’ ... +** package ‘EdSurvey’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** inst +** byte-compile and prepare package for lazy loading +Warning in check_dep_version() : + ABI version mismatch: +lme4 was built with Matrix ABI version 1 +Current Matrix ABI version is 0 +Please re-install lme4 from source or restore original ‘Matrix’ package +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘EdSurvey’ +* removing ‘/tmp/workdir/EdSurvey/new/EdSurvey.Rcheck/EdSurvey’ + + +``` +### CRAN + +``` +* installing *source* package ‘EdSurvey’ ... +** package ‘EdSurvey’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** inst +** byte-compile and prepare package for lazy loading +Warning in check_dep_version() : + ABI version mismatch: +lme4 was built with Matrix ABI version 1 +Current Matrix ABI version is 0 +Please re-install lme4 from source or restore original ‘Matrix’ package +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘EdSurvey’ +* removing ‘/tmp/workdir/EdSurvey/old/EdSurvey.Rcheck/EdSurvey’ + + +``` +# emplik + +
+ +* Version: 1.3-1 +* GitHub: NA +* Source code: https://github.com/cran/emplik +* Date/Publication: 2023-09-07 17:00:02 UTC +* Number of recursive dependencies: 33 + +Run `revdepcheck::cloud_details(, "emplik")` for more info + +
+ +## In both + +* checking whether package ‘emplik’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/emplik/new/emplik.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘emplik’ ... +** package ‘emplik’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C compiler: ‘gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ +gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c cumsumsurv.c -o cumsumsurv.o +gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o +gcc -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o emplik.so cumsumsurv.o init.o -L/opt/R/4.3.1/lib/R/lib -lR +installing to /tmp/workdir/emplik/new/emplik.Rcheck/00LOCK-emplik/00new/emplik/libs +** R +** data +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘emplik’ +* removing ‘/tmp/workdir/emplik/new/emplik.Rcheck/emplik’ + + +``` +### CRAN + +``` +* installing *source* package ‘emplik’ ... +** package ‘emplik’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C compiler: ‘gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ +gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c cumsumsurv.c -o cumsumsurv.o +gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o +gcc -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o emplik.so cumsumsurv.o init.o -L/opt/R/4.3.1/lib/R/lib -lR +installing to /tmp/workdir/emplik/old/emplik.Rcheck/00LOCK-emplik/00new/emplik/libs +** R +** data +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘emplik’ +* removing ‘/tmp/workdir/emplik/old/emplik.Rcheck/emplik’ + + +``` +# EpiEstim + +
+ +* Version: 2.2-4 +* GitHub: https://github.com/mrc-ide/EpiEstim +* Source code: https://github.com/cran/EpiEstim +* Date/Publication: 2021-01-07 16:20:10 UTC +* Number of recursive dependencies: 90 + +Run `revdepcheck::cloud_details(, "EpiEstim")` for more info + +
+ +## In both + +* checking whether package ‘EpiEstim’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/EpiEstim/new/EpiEstim.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘EpiEstim’ ... +** package ‘EpiEstim’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘EpiEstim’ +* removing ‘/tmp/workdir/EpiEstim/new/EpiEstim.Rcheck/EpiEstim’ + + +``` +### CRAN + +``` +* installing *source* package ‘EpiEstim’ ... +** package ‘EpiEstim’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘EpiEstim’ +* removing ‘/tmp/workdir/EpiEstim/old/EpiEstim.Rcheck/EpiEstim’ + + +``` +# epizootic + +
+ +* Version: 1.0.0 +* GitHub: https://github.com/viralemergence/epizootic +* Source code: https://github.com/cran/epizootic +* Date/Publication: 2024-10-02 13:10:05 UTC +* Number of recursive dependencies: 93 + +Run `revdepcheck::cloud_details(, "epizootic")` for more info + +
+ +## In both + +* checking whether package ‘epizootic’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/epizootic/new/epizootic.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘epizootic’ ... +** package ‘epizootic’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c aspatial_siri.cpp -o aspatial_siri.o +g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o epizootic.so RcppExports.o aspatial_siri.o -fopenmp -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR +installing to /tmp/workdir/epizootic/new/epizootic.Rcheck/00LOCK-epizootic/00new/epizootic/libs +** R +... +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘epizootic’ +* removing ‘/tmp/workdir/epizootic/new/epizootic.Rcheck/epizootic’ + + +``` +### CRAN + +``` +* installing *source* package ‘epizootic’ ... +** package ‘epizootic’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c aspatial_siri.cpp -o aspatial_siri.o +g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o epizootic.so RcppExports.o aspatial_siri.o -fopenmp -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR +installing to /tmp/workdir/epizootic/old/epizootic.Rcheck/00LOCK-epizootic/00new/epizootic/libs +** R +... +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘epizootic’ +* removing ‘/tmp/workdir/epizootic/old/epizootic.Rcheck/epizootic’ + + +``` +# erah + +
+ +* Version: 2.0.1 +* GitHub: https://github.com/xdomingoal/erah-devel +* Source code: https://github.com/cran/erah +* Date/Publication: 2023-12-20 10:10:02 UTC +* Number of recursive dependencies: 90 + +Run `revdepcheck::cloud_details(, "erah")` for more info + +
+ +## In both + +* checking whether package ‘erah’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/erah/new/erah.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘erah’ ... +** package ‘erah’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C compiler: ‘gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ +gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c registerDynamicSymbol.c -o registerDynamicSymbol.o +gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c runfunc.c -o runfunc.o +gcc -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o erah.so registerDynamicSymbol.o runfunc.o -L/opt/R/4.3.1/lib/R/lib -lR +installing to /tmp/workdir/erah/new/erah.Rcheck/00LOCK-erah/00new/erah/libs +** R +... +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘erah’ +* removing ‘/tmp/workdir/erah/new/erah.Rcheck/erah’ + + +``` +### CRAN + +``` +* installing *source* package ‘erah’ ... +** package ‘erah’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C compiler: ‘gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ +gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c registerDynamicSymbol.c -o registerDynamicSymbol.o +gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c runfunc.c -o runfunc.o +gcc -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o erah.so registerDynamicSymbol.o runfunc.o -L/opt/R/4.3.1/lib/R/lib -lR +installing to /tmp/workdir/erah/old/erah.Rcheck/00LOCK-erah/00new/erah/libs +** R +... +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘erah’ +* removing ‘/tmp/workdir/erah/old/erah.Rcheck/erah’ + + +``` +# evolqg + +
+ +* Version: 0.3-4 +* GitHub: https://github.com/lem-usp/evolqg +* Source code: https://github.com/cran/evolqg +* Date/Publication: 2023-12-05 15:20:12 UTC +* Number of recursive dependencies: 110 + +Run `revdepcheck::cloud_details(, "evolqg")` for more info + +
+ +## In both + +* checking whether package ‘evolqg’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/evolqg/new/evolqg.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘evolqg’ ... +** package ‘evolqg’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c fast_RS.cpp -o fast_RS.o +g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o evolqg.so RcppExports.o fast_RS.o -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR +installing to /tmp/workdir/evolqg/new/evolqg.Rcheck/00LOCK-evolqg/00new/evolqg/libs +** R +** data +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘evolqg’ +* removing ‘/tmp/workdir/evolqg/new/evolqg.Rcheck/evolqg’ + + +``` +### CRAN + +``` +* installing *source* package ‘evolqg’ ... +** package ‘evolqg’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c fast_RS.cpp -o fast_RS.o +g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o evolqg.so RcppExports.o fast_RS.o -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR +installing to /tmp/workdir/evolqg/old/evolqg.Rcheck/00LOCK-evolqg/00new/evolqg/libs +** R +** data +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘evolqg’ +* removing ‘/tmp/workdir/evolqg/old/evolqg.Rcheck/evolqg’ + + +``` +# EWSmethods + +
+ +* Version: NA +* GitHub: NA +* Source code: https://github.com/cran/EWSmethods +* Number of recursive dependencies: 139 + +Run `revdepcheck::cloud_details(, "EWSmethods")` for more info + +
+ +## Error before installation + +### Devel + +``` + + + + + + +``` +### CRAN + +``` + + + + + + +``` +# ezECM + +
+ +* Version: 1.0.0 +* GitHub: https://github.com/lanl/ezECM +* Source code: https://github.com/cran/ezECM +* Date/Publication: 2024-10-17 17:10:01 UTC +* Number of recursive dependencies: 119 + +Run `revdepcheck::cloud_details(, "ezECM")` for more info + +
+ +## In both + +* checking whether package ‘ezECM’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/ezECM/new/ezECM.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘ezECM’ ... +** package ‘ezECM’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘ezECM’ +* removing ‘/tmp/workdir/ezECM/new/ezECM.Rcheck/ezECM’ + + +``` +### CRAN + +``` +* installing *source* package ‘ezECM’ ... +** package ‘ezECM’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘ezECM’ +* removing ‘/tmp/workdir/ezECM/old/ezECM.Rcheck/ezECM’ + + +``` +# FAIRmaterials + +
+ +* Version: 0.4.2.1 +* GitHub: NA +* Source code: https://github.com/cran/FAIRmaterials +* Date/Publication: 2024-06-27 15:40:02 UTC +* Number of recursive dependencies: 93 + +Run `revdepcheck::cloud_details(, "FAIRmaterials")` for more info + +
+ +## In both + +* checking whether package ‘FAIRmaterials’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/FAIRmaterials/new/FAIRmaterials.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘FAIRmaterials’ ... +** package ‘FAIRmaterials’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** inst +** byte-compile and prepare package for lazy loading +Error in dyn.load(file, DLLpath = DLLpath, ...) : + unable to load shared object '/usr/local/lib/R/site-library/redland/libs/redland.so': + librdf.so.0: cannot open shared object file: No such file or directory +Calls: ... asNamespace -> loadNamespace -> library.dynam -> dyn.load +Execution halted +ERROR: lazy loading failed for package ‘FAIRmaterials’ +* removing ‘/tmp/workdir/FAIRmaterials/new/FAIRmaterials.Rcheck/FAIRmaterials’ + + +``` +### CRAN + +``` +* installing *source* package ‘FAIRmaterials’ ... +** package ‘FAIRmaterials’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** inst +** byte-compile and prepare package for lazy loading +Error in dyn.load(file, DLLpath = DLLpath, ...) : + unable to load shared object '/usr/local/lib/R/site-library/redland/libs/redland.so': + librdf.so.0: cannot open shared object file: No such file or directory +Calls: ... asNamespace -> loadNamespace -> library.dynam -> dyn.load +Execution halted +ERROR: lazy loading failed for package ‘FAIRmaterials’ +* removing ‘/tmp/workdir/FAIRmaterials/old/FAIRmaterials.Rcheck/FAIRmaterials’ + + +``` +# FastJM + +
+ +* Version: 1.4.2 +* GitHub: NA +* Source code: https://github.com/cran/FastJM +* Date/Publication: 2024-03-01 00:12:34 UTC +* Number of recursive dependencies: 146 + +Run `revdepcheck::cloud_details(, "FastJM")` for more info + +
+ +## Error before installation + +### Devel + +``` +* using log directory ‘/tmp/workdir/FastJM/new/FastJM.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 + GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 +* running under: Ubuntu 24.04.1 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘FastJM/DESCRIPTION’ ... OK +... +* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK +* checking use of PKG_*FLAGS in Makefiles ... OK +* checking compiled code ... OK +* checking examples ... OK +* checking for unstated dependencies in ‘tests’ ... OK +* checking tests ... OK + Running ‘spelling.R’ + Running ‘testthat.R’ +* DONE +Status: 1 NOTE + + + + + +``` +### CRAN + +``` +* using log directory ‘/tmp/workdir/FastJM/old/FastJM.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 + GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 +* running under: Ubuntu 24.04.1 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘FastJM/DESCRIPTION’ ... OK +... +* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK +* checking use of PKG_*FLAGS in Makefiles ... OK +* checking compiled code ... OK +* checking examples ... OK +* checking for unstated dependencies in ‘tests’ ... OK +* checking tests ... OK + Running ‘spelling.R’ + Running ‘testthat.R’ +* DONE +Status: 1 NOTE + + + + + +``` +# fdaPDE + +
+ +* Version: 1.1-20 +* GitHub: NA +* Source code: https://github.com/cran/fdaPDE +* Date/Publication: 2024-09-17 09:20:02 UTC +* Number of recursive dependencies: 50 + +Run `revdepcheck::cloud_details(, "fdaPDE")` for more info + +
+ +## In both + +* checking whether package ‘fdaPDE’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/fdaPDE/new/fdaPDE.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘fdaPDE’ ... +** package ‘fdaPDE’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C compiler: ‘gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ +using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ +using C++17 +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/RcppEigen/include' -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c Density_Estimation/Source/Rfun_Density_Estimation.cpp -o Density_Estimation/Source/Rfun_Density_Estimation.o +In file included from /usr/local/lib/R/site-library/RcppEigen/include/Eigen/Core:205, + from /usr/local/lib/R/site-library/RcppEigen/include/Eigen/StdVector:14, +... +/usr/local/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:225:24: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::CwiseBinaryOp, const Eigen::Solve >, Eigen::CwiseNullaryOp, Eigen::Matrix > >, const Eigen::Solve >, Eigen::Product >, Eigen::Matrix, 0>, Eigen::Transpose >, 0>, Eigen::Matrix, 0>, Eigen::Solve >, Eigen::CwiseNullaryOp, Eigen::Matrix > >, 0> > > >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ +Regression/Source/../../Skeletons/Include/../../Inference/Include/Wald_imp.h:54:5: required from ‘void Wald_Base::compute_V() [with InputHandler = RegressionData; MatrixType = Eigen::Matrix]’ +Regression/Source/../../Skeletons/Include/../../Inference/Include/Wald_imp.h:123:5: required from ‘VectorXr Wald_Base::compute_beta_pvalue() [with InputHandler = RegressionData; MatrixType = Eigen::Matrix; VectorXr = Eigen::Matrix]’ +Regression/Source/../../Skeletons/Include/../../Inference/Include/Wald_imp.h:104:10: required from here +/usr/local/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] +g++: fatal error: Killed signal terminated program cc1plus +compilation terminated. +make: *** [/opt/R/4.3.1/lib/R/etc/Makeconf:200: Regression/Source/Rfun_Regression_Laplace.o] Error 1 +ERROR: compilation failed for package ‘fdaPDE’ +* removing ‘/tmp/workdir/fdaPDE/new/fdaPDE.Rcheck/fdaPDE’ + + +``` +### CRAN + +``` +* installing *source* package ‘fdaPDE’ ... +** package ‘fdaPDE’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C compiler: ‘gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ +using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ +using C++17 +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/RcppEigen/include' -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c Density_Estimation/Source/Rfun_Density_Estimation.cpp -o Density_Estimation/Source/Rfun_Density_Estimation.o +In file included from /usr/local/lib/R/site-library/RcppEigen/include/Eigen/Core:205, + from /usr/local/lib/R/site-library/RcppEigen/include/Eigen/StdVector:14, +... +/usr/local/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:225:24: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::CwiseBinaryOp, const Eigen::Solve >, Eigen::CwiseNullaryOp, Eigen::Matrix > >, const Eigen::Solve >, Eigen::Product >, Eigen::Matrix, 0>, Eigen::Transpose >, 0>, Eigen::Matrix, 0>, Eigen::Solve >, Eigen::CwiseNullaryOp, Eigen::Matrix > >, 0> > > >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ +Regression/Source/../../Skeletons/Include/../../Inference/Include/Wald_imp.h:54:5: required from ‘void Wald_Base::compute_V() [with InputHandler = RegressionData; MatrixType = Eigen::Matrix]’ +Regression/Source/../../Skeletons/Include/../../Inference/Include/Wald_imp.h:123:5: required from ‘VectorXr Wald_Base::compute_beta_pvalue() [with InputHandler = RegressionData; MatrixType = Eigen::Matrix; VectorXr = Eigen::Matrix]’ +Regression/Source/../../Skeletons/Include/../../Inference/Include/Wald_imp.h:104:10: required from here +/usr/local/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] +g++: fatal error: Killed signal terminated program cc1plus +compilation terminated. +make: *** [/opt/R/4.3.1/lib/R/etc/Makeconf:200: Regression/Source/Rfun_Regression_Laplace.o] Error 1 +ERROR: compilation failed for package ‘fdaPDE’ +* removing ‘/tmp/workdir/fdaPDE/old/fdaPDE.Rcheck/fdaPDE’ + + +``` +# flowr + +
+ +* Version: 0.9.11 +* GitHub: https://github.com/flow-r/flowr +* Source code: https://github.com/cran/flowr +* Date/Publication: 2021-03-02 22:00:03 UTC +* Number of recursive dependencies: 0 + +Run `revdepcheck::cloud_details(, "flowr")` for more info + +
+ +## In both + +* checking whether package ‘flowr’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/flowr/new/flowr.Rcheck/00install.out’ for details. + ``` + +* checking package dependencies ... NOTE + ``` + Packages which this enhances but not available for checking: + 'ggplot2', 'openxlsx', 'pacman', 'cowplot' + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘flowr’ ... +** package ‘flowr’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** inst +** byte-compile and prepare package for lazy loading +Error: package or namespace load failed for ‘params’: + .onLoad failed in loadNamespace() for 'params', details: + call: glue_data(.x = NULL, ..., .sep = .sep, .envir = .envir, .open = .open, + error: is.environment(.envir) is not TRUE +Execution halted +ERROR: lazy loading failed for package ‘flowr’ +* removing ‘/tmp/workdir/flowr/new/flowr.Rcheck/flowr’ + + +``` +### CRAN + +``` +* installing *source* package ‘flowr’ ... +** package ‘flowr’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** inst +** byte-compile and prepare package for lazy loading +Error: package or namespace load failed for ‘params’: + .onLoad failed in loadNamespace() for 'params', details: + call: glue_data(.x = NULL, ..., .sep = .sep, .envir = .envir, .open = .open, + error: is.environment(.envir) is not TRUE +Execution halted +ERROR: lazy loading failed for package ‘flowr’ +* removing ‘/tmp/workdir/flowr/old/flowr.Rcheck/flowr’ + + +``` +# ForecastComb + +
+ +* Version: 1.3.1 +* GitHub: https://github.com/ceweiss/ForecastComb +* Source code: https://github.com/cran/ForecastComb +* Date/Publication: 2018-08-07 13:50:08 UTC +* Number of recursive dependencies: 73 + +Run `revdepcheck::cloud_details(, "ForecastComb")` for more info + +
+ +## In both + +* checking whether package ‘ForecastComb’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/ForecastComb/new/ForecastComb.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘ForecastComb’ ... +** package ‘ForecastComb’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘ForecastComb’ +* removing ‘/tmp/workdir/ForecastComb/new/ForecastComb.Rcheck/ForecastComb’ + + +``` +### CRAN + +``` +* installing *source* package ‘ForecastComb’ ... +** package ‘ForecastComb’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘ForecastComb’ +* removing ‘/tmp/workdir/ForecastComb/old/ForecastComb.Rcheck/ForecastComb’ + + +``` +# FoReco + +
+ +* Version: 1.0.0 +* GitHub: https://github.com/daniGiro/FoReco +* Source code: https://github.com/cran/FoReco +* Date/Publication: 2024-08-20 22:20:05 UTC +* Number of recursive dependencies: 28 + +Run `revdepcheck::cloud_details(, "FoReco")` for more info + +
+ +## In both + +* checking whether package ‘FoReco’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/FoReco/new/FoReco.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘FoReco’ ... +** package ‘FoReco’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.1 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘FoReco’ +* removing ‘/tmp/workdir/FoReco/new/FoReco.Rcheck/FoReco’ + + +``` +### CRAN + +``` +* installing *source* package ‘FoReco’ ... +** package ‘FoReco’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.1 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘FoReco’ +* removing ‘/tmp/workdir/FoReco/old/FoReco.Rcheck/FoReco’ + + +``` +# frechet + +
+ +* Version: 0.3.0 +* GitHub: https://github.com/functionaldata/tFrechet +* Source code: https://github.com/cran/frechet +* Date/Publication: 2023-12-09 15:50:08 UTC +* Number of recursive dependencies: 110 + +Run `revdepcheck::cloud_details(, "frechet")` for more info + +
+ +## In both + +* checking whether package ‘frechet’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/frechet/new/frechet.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘frechet’ ... +** package ‘frechet’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.1 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘frechet’ +* removing ‘/tmp/workdir/frechet/new/frechet.Rcheck/frechet’ + + +``` +### CRAN + +``` +* installing *source* package ‘frechet’ ... +** package ‘frechet’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.1 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘frechet’ +* removing ‘/tmp/workdir/frechet/old/frechet.Rcheck/frechet’ + + +``` +# FREEtree + +
+ +* Version: 0.1.0 +* GitHub: NA +* Source code: https://github.com/cran/FREEtree +* Date/Publication: 2020-06-25 15:00:03 UTC +* Number of recursive dependencies: 133 + +Run `revdepcheck::cloud_details(, "FREEtree")` for more info + +
+ +## In both + +* checking whether package ‘FREEtree’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/FREEtree/new/FREEtree.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘FREEtree’ ... +** package ‘FREEtree’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Warning in check_dep_version() : + ABI version mismatch: +lme4 was built with Matrix ABI version 1 +Current Matrix ABI version is 0 +Please re-install lme4 from source or restore original ‘Matrix’ package +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘FREEtree’ +* removing ‘/tmp/workdir/FREEtree/new/FREEtree.Rcheck/FREEtree’ + + +``` +### CRAN + +``` +* installing *source* package ‘FREEtree’ ... +** package ‘FREEtree’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Warning in check_dep_version() : + ABI version mismatch: +lme4 was built with Matrix ABI version 1 +Current Matrix ABI version is 0 +Please re-install lme4 from source or restore original ‘Matrix’ package +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘FREEtree’ +* removing ‘/tmp/workdir/FREEtree/old/FREEtree.Rcheck/FREEtree’ + + +``` +# gapfill + +
+ +* Version: 0.9.6-1 +* GitHub: https://github.com/florafauna/gapfill +* Source code: https://github.com/cran/gapfill +* Date/Publication: 2021-02-12 10:10:05 UTC +* Number of recursive dependencies: 70 + +Run `revdepcheck::cloud_details(, "gapfill")` for more info + +
+ +## In both + +* checking whether package ‘gapfill’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/gapfill/new/gapfill.Rcheck/00install.out’ for details. + ``` + +* checking package dependencies ... NOTE + ``` + Packages which this enhances but not available for checking: + 'raster', 'doParallel', 'doMPI' + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘gapfill’ ... +** package ‘gapfill’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c gapfill.cpp -o gapfill.o +g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o gapfill.so RcppExports.o gapfill.o -L/opt/R/4.3.1/lib/R/lib -lR +installing to /tmp/workdir/gapfill/new/gapfill.Rcheck/00LOCK-gapfill/00new/gapfill/libs +** R +... +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘gapfill’ +* removing ‘/tmp/workdir/gapfill/new/gapfill.Rcheck/gapfill’ + + +``` +### CRAN + +``` +* installing *source* package ‘gapfill’ ... +** package ‘gapfill’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c gapfill.cpp -o gapfill.o +g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o gapfill.so RcppExports.o gapfill.o -L/opt/R/4.3.1/lib/R/lib -lR +installing to /tmp/workdir/gapfill/old/gapfill.Rcheck/00LOCK-gapfill/00new/gapfill/libs +** R +... +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘gapfill’ +* removing ‘/tmp/workdir/gapfill/old/gapfill.Rcheck/gapfill’ + + +``` +# GeomComb + +
+ +* Version: 1.0 +* GitHub: https://github.com/ceweiss/GeomComb +* Source code: https://github.com/cran/GeomComb +* Date/Publication: 2016-11-27 16:02:26 +* Number of recursive dependencies: 74 + +Run `revdepcheck::cloud_details(, "GeomComb")` for more info + +
+ +## In both + +* checking whether package ‘GeomComb’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/GeomComb/new/GeomComb.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘GeomComb’ ... +** package ‘GeomComb’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘GeomComb’ +* removing ‘/tmp/workdir/GeomComb/new/GeomComb.Rcheck/GeomComb’ + + +``` +### CRAN + +``` +* installing *source* package ‘GeomComb’ ... +** package ‘GeomComb’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘GeomComb’ +* removing ‘/tmp/workdir/GeomComb/old/GeomComb.Rcheck/GeomComb’ + + +``` +# geomorph + +
+ +* Version: NA +* GitHub: NA +* Source code: https://github.com/cran/geomorph +* Number of recursive dependencies: 71 + +Run `revdepcheck::cloud_details(, "geomorph")` for more info + +
+ +## Error before installation + +### Devel + +``` + + + + + + +``` +### CRAN + +``` + + + + + + +``` +# gllvm + +
+ +* Version: 1.4.3 +* GitHub: https://github.com/JenniNiku/gllvm +* Source code: https://github.com/cran/gllvm +* Date/Publication: 2023-09-18 15:00:02 UTC +* Number of recursive dependencies: 60 + +Run `revdepcheck::cloud_details(, "gllvm")` for more info + +
+ +## In both + +* checking whether package ‘gllvm’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/gllvm/new/gllvm.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘gllvm’ ... +** package ‘gllvm’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -DTMBAD_FRAMEWORK -I'/usr/local/lib/R/site-library/TMB/include' -I'/usr/local/lib/R/site-library/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -c gllvm.cpp -o gllvm.o +In file included from /usr/local/lib/R/site-library/RcppEigen/include/Eigen/Core:205, + from /usr/local/lib/R/site-library/RcppEigen/include/Eigen/Dense:1, + from /usr/local/lib/R/site-library/TMB/include/TMB.hpp:92, + from gllvm.cpp:2: +... +/usr/local/lib/R/site-library/TMB/include/tiny_ad/atomic.hpp:30:1: required from ‘void atomic::bessel_kOp::reverse(TMBad::ReverseArgs&) [with Type = double; int order = 3; int ninput = 2; int noutput = 8; long int mask = 9]’ +/usr/local/lib/R/site-library/TMB/include/TMBad/global.hpp:1721:28: required from ‘void TMBad::global::AddForwardMarkReverseMark::reverse(TMBad::ReverseArgs&) [with Type = double; OperatorBase = TMBad::global::AddIncrementDecrement > > >]’ +/usr/local/lib/R/site-library/TMB/include/TMBad/global.hpp:2134:57: required from ‘void TMBad::global::Complete::reverse(TMBad::ReverseArgs&) [with OperatorBase = atomic::bessel_kOp<3, 2, 8, 9>]’ +/usr/local/lib/R/site-library/TMB/include/TMBad/global.hpp:2134:10: required from here +/usr/local/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] +g++: fatal error: Killed signal terminated program cc1plus +compilation terminated. +make: *** [/opt/R/4.3.1/lib/R/etc/Makeconf:200: gllvm.o] Error 1 +ERROR: compilation failed for package ‘gllvm’ +* removing ‘/tmp/workdir/gllvm/new/gllvm.Rcheck/gllvm’ + + +``` +### CRAN + +``` +* installing *source* package ‘gllvm’ ... +** package ‘gllvm’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -DTMBAD_FRAMEWORK -I'/usr/local/lib/R/site-library/TMB/include' -I'/usr/local/lib/R/site-library/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -c gllvm.cpp -o gllvm.o +In file included from /usr/local/lib/R/site-library/RcppEigen/include/Eigen/Core:205, + from /usr/local/lib/R/site-library/RcppEigen/include/Eigen/Dense:1, + from /usr/local/lib/R/site-library/TMB/include/TMB.hpp:92, + from gllvm.cpp:2: +... +/usr/local/lib/R/site-library/TMB/include/tiny_ad/atomic.hpp:30:1: required from ‘void atomic::bessel_kOp::reverse(TMBad::ReverseArgs&) [with Type = double; int order = 3; int ninput = 2; int noutput = 8; long int mask = 9]’ +/usr/local/lib/R/site-library/TMB/include/TMBad/global.hpp:1721:28: required from ‘void TMBad::global::AddForwardMarkReverseMark::reverse(TMBad::ReverseArgs&) [with Type = double; OperatorBase = TMBad::global::AddIncrementDecrement > > >]’ +/usr/local/lib/R/site-library/TMB/include/TMBad/global.hpp:2134:57: required from ‘void TMBad::global::Complete::reverse(TMBad::ReverseArgs&) [with OperatorBase = atomic::bessel_kOp<3, 2, 8, 9>]’ +/usr/local/lib/R/site-library/TMB/include/TMBad/global.hpp:2134:10: required from here +/usr/local/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] +g++: fatal error: Killed signal terminated program cc1plus +compilation terminated. +make: *** [/opt/R/4.3.1/lib/R/etc/Makeconf:200: gllvm.o] Error 1 +ERROR: compilation failed for package ‘gllvm’ +* removing ‘/tmp/workdir/gllvm/old/gllvm.Rcheck/gllvm’ + + +``` +# gmoTree + +
+ +* Version: NA +* GitHub: NA +* Source code: https://github.com/cran/gmoTree +* Number of recursive dependencies: 60 + +Run `revdepcheck::cloud_details(, "gmoTree")` for more info + +
+ +## Error before installation + +### Devel + +``` + + + + + + +``` +### CRAN + +``` + + + + + + +``` +# gpuR + +
+ +* Version: 2.0.6 +* GitHub: https://github.com/cdeterman/gpuR +* Source code: https://github.com/cran/gpuR +* Date/Publication: 2024-05-23 16:00:02 UTC +* Number of recursive dependencies: 32 + +Run `revdepcheck::cloud_details(, "gpuR")` for more info + +
+ +## In both + +* checking whether package ‘gpuR’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/gpuR/new/gpuR.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘gpuR’ ... +** package ‘gpuR’ successfully unpacked and MD5 sums checked +** using staged installation +OPENCL_FLAGS not set, using default -DCL_HPP_MINIMUM_OPENCL_VERSION=110 -DCL_USE_DEPRECATED_OPENCL_1_2_APIS -DCL_HPP_TARGET_OPENCL_VERSION=120 +Linux OS +found OpenCL library +Checking OpenCL C++ API +OPENCL_INC not set, using default include directory /usr/include +No OpenCL C++ API found, will use the headers contained in the package + +... +/usr/local/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Assign.h:66:28: required from ‘Derived& Eigen::MatrixBase::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Matrix; Derived = Eigen::Block, 0, Eigen::OuterStride<> >, -1, 1, true>]’ +../inst/include/gpuR/dynEigenMat.hpp:192:30: required from ‘void dynEigenMat::setCol(SEXP, int) [with T = double; SEXP = SEXPREC*]’ +../inst/include/gpuR/dynEigenMat.hpp:383:16: required from here +/usr/local/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] +g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o gpuR.so RcppExports.o chol.o context.o custom_math.o device.o gpuEigenPtr.o gpuMatrix_igemm.o norm.o platform.o set_row_order.o solve.o synchronize.o trunc_gpuMat.o utils-vcl.o utils.o vclPtr.o vienna_blas1.o vienna_blas2.o vienna_blas3.o vienna_eigen.o vienna_qr.o vienna_stats.o vienna_svd.o -lOpenCL -L/opt/R/4.3.1/lib/R/lib -lR +/usr/bin/ld: cannot find -lOpenCL: No such file or directory +collect2: error: ld returned 1 exit status +make: *** [/opt/R/4.3.1/lib/R/share/make/shlib.mk:10: gpuR.so] Error 1 +ERROR: compilation failed for package ‘gpuR’ +* removing ‘/tmp/workdir/gpuR/new/gpuR.Rcheck/gpuR’ + + +``` +### CRAN + +``` +* installing *source* package ‘gpuR’ ... +** package ‘gpuR’ successfully unpacked and MD5 sums checked +** using staged installation +OPENCL_FLAGS not set, using default -DCL_HPP_MINIMUM_OPENCL_VERSION=110 -DCL_USE_DEPRECATED_OPENCL_1_2_APIS -DCL_HPP_TARGET_OPENCL_VERSION=120 +Linux OS +found OpenCL library +Checking OpenCL C++ API +OPENCL_INC not set, using default include directory /usr/include +No OpenCL C++ API found, will use the headers contained in the package + +... +/usr/local/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Assign.h:66:28: required from ‘Derived& Eigen::MatrixBase::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Matrix; Derived = Eigen::Block, 0, Eigen::OuterStride<> >, -1, 1, true>]’ +../inst/include/gpuR/dynEigenMat.hpp:192:30: required from ‘void dynEigenMat::setCol(SEXP, int) [with T = double; SEXP = SEXPREC*]’ +../inst/include/gpuR/dynEigenMat.hpp:383:16: required from here +/usr/local/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] +g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o gpuR.so RcppExports.o chol.o context.o custom_math.o device.o gpuEigenPtr.o gpuMatrix_igemm.o norm.o platform.o set_row_order.o solve.o synchronize.o trunc_gpuMat.o utils-vcl.o utils.o vclPtr.o vienna_blas1.o vienna_blas2.o vienna_blas3.o vienna_eigen.o vienna_qr.o vienna_stats.o vienna_svd.o -lOpenCL -L/opt/R/4.3.1/lib/R/lib -lR +/usr/bin/ld: cannot find -lOpenCL: No such file or directory +collect2: error: ld returned 1 exit status +make: *** [/opt/R/4.3.1/lib/R/share/make/shlib.mk:10: gpuR.so] Error 1 +ERROR: compilation failed for package ‘gpuR’ +* removing ‘/tmp/workdir/gpuR/old/gpuR.Rcheck/gpuR’ + + +``` +# hettx + +
+ +* Version: 0.1.3 +* GitHub: https://github.com/bfifield/hettx +* Source code: https://github.com/cran/hettx +* Date/Publication: 2023-08-19 22:22:34 UTC +* Number of recursive dependencies: 84 + +Run `revdepcheck::cloud_details(, "hettx")` for more info + +
+ +## In both + +* checking whether package ‘hettx’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/hettx/new/hettx.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘hettx’ ... +** package ‘hettx’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘hettx’ +* removing ‘/tmp/workdir/hettx/new/hettx.Rcheck/hettx’ + + +``` +### CRAN + +``` +* installing *source* package ‘hettx’ ... +** package ‘hettx’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘hettx’ +* removing ‘/tmp/workdir/hettx/old/hettx.Rcheck/hettx’ + + +``` +# Hmsc + +
+ +* Version: 3.0-13 +* GitHub: https://github.com/hmsc-r/HMSC +* Source code: https://github.com/cran/Hmsc +* Date/Publication: 2022-08-11 14:10:14 UTC +* Number of recursive dependencies: 75 + +Run `revdepcheck::cloud_details(, "Hmsc")` for more info + +
+ +## In both + +* checking whether package ‘Hmsc’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/Hmsc/new/Hmsc.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘Hmsc’ ... +** package ‘Hmsc’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘Hmsc’ +* removing ‘/tmp/workdir/Hmsc/new/Hmsc.Rcheck/Hmsc’ + + +``` +### CRAN + +``` +* installing *source* package ‘Hmsc’ ... +** package ‘Hmsc’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘Hmsc’ +* removing ‘/tmp/workdir/Hmsc/old/Hmsc.Rcheck/Hmsc’ + + +``` +# iNZightPlots + +
+ +* Version: 2.15.3 +* GitHub: https://github.com/iNZightVIT/iNZightPlots +* Source code: https://github.com/cran/iNZightPlots +* Date/Publication: 2023-10-14 05:00:02 UTC +* Number of recursive dependencies: 161 + +Run `revdepcheck::cloud_details(, "iNZightPlots")` for more info + +
+ +## In both + +* checking whether package ‘iNZightPlots’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/iNZightPlots/new/iNZightPlots.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘iNZightPlots’ ... +** package ‘iNZightPlots’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘iNZightPlots’ +* removing ‘/tmp/workdir/iNZightPlots/new/iNZightPlots.Rcheck/iNZightPlots’ + + +``` +### CRAN + +``` +* installing *source* package ‘iNZightPlots’ ... +** package ‘iNZightPlots’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘iNZightPlots’ +* removing ‘/tmp/workdir/iNZightPlots/old/iNZightPlots.Rcheck/iNZightPlots’ + + +``` +# iNZightRegression + +
+ +* Version: 1.3.4 +* GitHub: https://github.com/iNZightVIT/iNZightRegression +* Source code: https://github.com/cran/iNZightRegression +* Date/Publication: 2024-04-05 02:32:59 UTC +* Number of recursive dependencies: 159 + +Run `revdepcheck::cloud_details(, "iNZightRegression")` for more info + +
+ +## In both + +* checking whether package ‘iNZightRegression’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/iNZightRegression/new/iNZightRegression.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘iNZightRegression’ ... +** package ‘iNZightRegression’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘iNZightRegression’ +* removing ‘/tmp/workdir/iNZightRegression/new/iNZightRegression.Rcheck/iNZightRegression’ + + +``` +### CRAN + +``` +* installing *source* package ‘iNZightRegression’ ... +** package ‘iNZightRegression’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘iNZightRegression’ +* removing ‘/tmp/workdir/iNZightRegression/old/iNZightRegression.Rcheck/iNZightRegression’ + + +``` +# JMH + +
+ +* Version: 1.0.3 +* GitHub: NA +* Source code: https://github.com/cran/JMH +* Date/Publication: 2024-02-20 06:40:02 UTC +* Number of recursive dependencies: 146 + +Run `revdepcheck::cloud_details(, "JMH")` for more info + +
+ +## Error before installation + +### Devel + +``` +* using log directory ‘/tmp/workdir/JMH/new/JMH.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 + GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 +* running under: Ubuntu 24.04.1 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘JMH/DESCRIPTION’ ... OK +... +* checking line endings in C/C++/Fortran sources/headers ... OK +* checking line endings in Makefiles ... OK +* checking compilation flags in Makevars ... OK +* checking for GNU extensions in Makefiles ... OK +* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK +* checking use of PKG_*FLAGS in Makefiles ... OK +* checking compiled code ... OK +* checking examples ... OK +* DONE +Status: 1 NOTE + + + + + +``` +### CRAN + +``` +* using log directory ‘/tmp/workdir/JMH/old/JMH.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 + GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 +* running under: Ubuntu 24.04.1 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘JMH/DESCRIPTION’ ... OK +... +* checking line endings in C/C++/Fortran sources/headers ... OK +* checking line endings in Makefiles ... OK +* checking compilation flags in Makevars ... OK +* checking for GNU extensions in Makefiles ... OK +* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK +* checking use of PKG_*FLAGS in Makefiles ... OK +* checking compiled code ... OK +* checking examples ... OK +* DONE +Status: 1 NOTE + + + + + +``` +# joineRML + +
+ +* Version: 0.4.6 +* GitHub: https://github.com/graemeleehickey/joineRML +* Source code: https://github.com/cran/joineRML +* Date/Publication: 2023-01-20 04:50:02 UTC +* Number of recursive dependencies: 90 + +Run `revdepcheck::cloud_details(, "joineRML")` for more info + +
+ +## In both + +* checking whether package ‘joineRML’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/joineRML/new/joineRML.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘joineRML’ ... +** package ‘joineRML’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C compiler: ‘gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ +using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ +using C++11 +g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c expW.cpp -o expW.o +g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c gammaUpdate.cpp -o gammaUpdate.o +... +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘joineRML’ +* removing ‘/tmp/workdir/joineRML/new/joineRML.Rcheck/joineRML’ + + +``` +### CRAN + +``` +* installing *source* package ‘joineRML’ ... +** package ‘joineRML’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C compiler: ‘gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ +using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ +using C++11 +g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c expW.cpp -o expW.o +g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c gammaUpdate.cpp -o gammaUpdate.o +... +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘joineRML’ +* removing ‘/tmp/workdir/joineRML/old/joineRML.Rcheck/joineRML’ + + +``` +# jsmodule + +
+ +* Version: 1.5.9 +* GitHub: https://github.com/jinseob2kim/jsmodule +* Source code: https://github.com/cran/jsmodule +* Date/Publication: 2024-10-17 05:50:02 UTC +* Number of recursive dependencies: 237 + +Run `revdepcheck::cloud_details(, "jsmodule")` for more info + +
+ +## Error before installation + +### Devel + +``` +* using log directory ‘/tmp/workdir/jsmodule/new/jsmodule.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 + GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 +* running under: Ubuntu 24.04.1 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘jsmodule/DESCRIPTION’ ... OK +... +* checking for unstated dependencies in ‘tests’ ... OK +* checking tests ... OK + Running ‘testthat.R’ +* checking for unstated dependencies in vignettes ... OK +* checking package vignettes in ‘inst/doc’ ... OK +* checking running R code from vignettes ... OK + ‘jsmodule.Rmd’ using ‘UTF-8’... OK +* checking re-building of vignette outputs ... OK +* DONE +Status: OK + + + + + +``` +### CRAN + +``` +* using log directory ‘/tmp/workdir/jsmodule/old/jsmodule.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 + GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 +* running under: Ubuntu 24.04.1 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘jsmodule/DESCRIPTION’ ... OK +... +* checking for unstated dependencies in ‘tests’ ... OK +* checking tests ... OK + Running ‘testthat.R’ +* checking for unstated dependencies in vignettes ... OK +* checking package vignettes in ‘inst/doc’ ... OK +* checking running R code from vignettes ... OK + ‘jsmodule.Rmd’ using ‘UTF-8’... OK +* checking re-building of vignette outputs ... OK +* DONE +Status: OK + + + + + +``` +# kmc + +
+ +* Version: 0.4-2 +* GitHub: https://github.com/yfyang86/kmc +* Source code: https://github.com/cran/kmc +* Date/Publication: 2022-11-22 08:30:02 UTC +* Number of recursive dependencies: 60 + +Run `revdepcheck::cloud_details(, "kmc")` for more info + +
+ +## In both + +* checking whether package ‘kmc’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/kmc/new/kmc.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘kmc’ ... +** package ‘kmc’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C compiler: ‘gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ +using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExport.cpp -o RcppExport.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c kmc.cpp -o kmc.o +gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c kmc_init.c -o kmc_init.o +gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c surv2.c -o surv2.o +g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o kmc.so RcppExport.o kmc.o kmc_init.o surv2.o -L/opt/R/4.3.1/lib/R/lib -lR +installing to /tmp/workdir/kmc/new/kmc.Rcheck/00LOCK-kmc/00new/kmc/libs +** R +** byte-compile and prepare package for lazy loading +Error: package or namespace load failed for ‘emplik’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Execution halted +ERROR: lazy loading failed for package ‘kmc’ +* removing ‘/tmp/workdir/kmc/new/kmc.Rcheck/kmc’ + + +``` +### CRAN + +``` +* installing *source* package ‘kmc’ ... +** package ‘kmc’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C compiler: ‘gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ +using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExport.cpp -o RcppExport.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c kmc.cpp -o kmc.o +gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c kmc_init.c -o kmc_init.o +gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c surv2.c -o surv2.o +g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o kmc.so RcppExport.o kmc.o kmc_init.o surv2.o -L/opt/R/4.3.1/lib/R/lib -lR +installing to /tmp/workdir/kmc/old/kmc.Rcheck/00LOCK-kmc/00new/kmc/libs +** R +** byte-compile and prepare package for lazy loading +Error: package or namespace load failed for ‘emplik’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Execution halted +ERROR: lazy loading failed for package ‘kmc’ +* removing ‘/tmp/workdir/kmc/old/kmc.Rcheck/kmc’ + + +``` +# KMunicate + +
+ +* Version: 0.2.5 +* GitHub: https://github.com/ellessenne/KMunicate-package +* Source code: https://github.com/cran/KMunicate +* Date/Publication: 2024-05-16 11:50:08 UTC +* Number of recursive dependencies: 171 + +Run `revdepcheck::cloud_details(, "KMunicate")` for more info + +
+ +## Error before installation + +### Devel + +``` +* using log directory ‘/tmp/workdir/KMunicate/new/KMunicate.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 + GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 +* running under: Ubuntu 24.04.1 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘KMunicate/DESCRIPTION’ ... OK +... +* checking for unstated dependencies in ‘tests’ ... OK +* checking tests ... OK + Running ‘testthat.R’ +* checking for unstated dependencies in vignettes ... OK +* checking package vignettes in ‘inst/doc’ ... OK +* checking running R code from vignettes ... OK + ‘KMunicate.Rmd’ using ‘UTF-8’... OK +* checking re-building of vignette outputs ... OK +* DONE +Status: OK + + + + + +``` +### CRAN + +``` +* using log directory ‘/tmp/workdir/KMunicate/old/KMunicate.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 + GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 +* running under: Ubuntu 24.04.1 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘KMunicate/DESCRIPTION’ ... OK +... +* checking for unstated dependencies in ‘tests’ ... OK +* checking tests ... OK + Running ‘testthat.R’ +* checking for unstated dependencies in vignettes ... OK +* checking package vignettes in ‘inst/doc’ ... OK +* checking running R code from vignettes ... OK + ‘KMunicate.Rmd’ using ‘UTF-8’... OK +* checking re-building of vignette outputs ... OK +* DONE +Status: OK + + + + + +``` +# Landmarking + +
+ +* Version: 1.0.0 +* GitHub: https://github.com/isobelbarrott/Landmarking +* Source code: https://github.com/cran/Landmarking +* Date/Publication: 2022-02-15 20:00:07 UTC +* Number of recursive dependencies: 122 + +Run `revdepcheck::cloud_details(, "Landmarking")` for more info + +
+ +## Error before installation + +### Devel + +``` +* using log directory ‘/tmp/workdir/Landmarking/new/Landmarking.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 + GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 +* running under: Ubuntu 24.04.1 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘Landmarking/DESCRIPTION’ ... OK +... +* this is package ‘Landmarking’ version ‘1.0.0’ +* package encoding: UTF-8 +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Package required but not available: ‘riskRegression’ + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + + + +``` +### CRAN + +``` +* using log directory ‘/tmp/workdir/Landmarking/old/Landmarking.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 + GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 +* running under: Ubuntu 24.04.1 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘Landmarking/DESCRIPTION’ ... OK +... +* this is package ‘Landmarking’ version ‘1.0.0’ +* package encoding: UTF-8 +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Package required but not available: ‘riskRegression’ + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + + + +``` +# lavaSearch2 + +
+ +* Version: 2.0.3 +* GitHub: https://github.com/bozenne/lavaSearch2 +* Source code: https://github.com/cran/lavaSearch2 +* Date/Publication: 2024-02-23 09:10:02 UTC +* Number of recursive dependencies: 146 + +Run `revdepcheck::cloud_details(, "lavaSearch2")` for more info + +
+ +## Error before installation + +### Devel + +``` +* using log directory ‘/tmp/workdir/lavaSearch2/new/lavaSearch2.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 + GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 +* running under: Ubuntu 24.04.1 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘lavaSearch2/DESCRIPTION’ ... OK +... + [ FAIL 1 | WARN 1 | SKIP 0 | PASS 266 ] + Error: Test failures + Execution halted +* checking for unstated dependencies in vignettes ... OK +* checking package vignettes in ‘inst/doc’ ... OK +* checking running R code from vignettes ... NONE + ‘overview.pdf.asis’ using ‘UTF-8’... OK +* checking re-building of vignette outputs ... OK +* DONE +Status: 1 ERROR, 1 NOTE + + + + + +``` +### CRAN + +``` +* using log directory ‘/tmp/workdir/lavaSearch2/old/lavaSearch2.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 + GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 +* running under: Ubuntu 24.04.1 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘lavaSearch2/DESCRIPTION’ ... OK +... + [ FAIL 1 | WARN 1 | SKIP 0 | PASS 266 ] + Error: Test failures + Execution halted +* checking for unstated dependencies in vignettes ... OK +* checking package vignettes in ‘inst/doc’ ... OK +* checking running R code from vignettes ... NONE + ‘overview.pdf.asis’ using ‘UTF-8’... OK +* checking re-building of vignette outputs ... OK +* DONE +Status: 1 ERROR, 1 NOTE + + + + + +``` +# lnmixsurv + +
+ +* Version: 3.1.6 +* GitHub: NA +* Source code: https://github.com/cran/lnmixsurv +* Date/Publication: 2024-09-03 15:20:08 UTC +* Number of recursive dependencies: 195 + +Run `revdepcheck::cloud_details(, "lnmixsurv")` for more info + +
+ +## Error before installation + +### Devel + +``` +* using log directory ‘/tmp/workdir/lnmixsurv/new/lnmixsurv.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 + GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 +* running under: Ubuntu 24.04.1 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘lnmixsurv/DESCRIPTION’ ... OK +... +* checking package vignettes in ‘inst/doc’ ... OK +* checking running R code from vignettes ... OK + ‘compare.Rmd’ using ‘UTF-8’... OK + ‘expectation_maximization.Rmd’ using ‘UTF-8’... OK + ‘intercept_only.Rmd’ using ‘UTF-8’... OK + ‘lnmixsurv.Rmd’ using ‘UTF-8’... OK + ‘parallel_computation.Rmd’ using ‘UTF-8’... OK +* checking re-building of vignette outputs ... OK +* DONE +Status: 4 NOTEs + + + + + +``` +### CRAN + +``` +* using log directory ‘/tmp/workdir/lnmixsurv/old/lnmixsurv.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 + GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 +* running under: Ubuntu 24.04.1 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘lnmixsurv/DESCRIPTION’ ... OK +... +* checking package vignettes in ‘inst/doc’ ... OK +* checking running R code from vignettes ... OK + ‘compare.Rmd’ using ‘UTF-8’... OK + ‘expectation_maximization.Rmd’ using ‘UTF-8’... OK + ‘intercept_only.Rmd’ using ‘UTF-8’... OK + ‘lnmixsurv.Rmd’ using ‘UTF-8’... OK + ‘parallel_computation.Rmd’ using ‘UTF-8’... OK +* checking re-building of vignette outputs ... OK +* DONE +Status: 4 NOTEs + + + + + +``` +# locpolExpectile + +
+ +* Version: 0.1.1 +* GitHub: NA +* Source code: https://github.com/cran/locpolExpectile +* Date/Publication: 2021-08-03 09:50:05 UTC +* Number of recursive dependencies: 70 + +Run `revdepcheck::cloud_details(, "locpolExpectile")` for more info + +
+ +## In both + +* checking whether package ‘locpolExpectile’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/locpolExpectile/new/locpolExpectile.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘locpolExpectile’ ... +** package ‘locpolExpectile’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘locpolExpectile’ +* removing ‘/tmp/workdir/locpolExpectile/new/locpolExpectile.Rcheck/locpolExpectile’ + + +``` +### CRAN + +``` +* installing *source* package ‘locpolExpectile’ ... +** package ‘locpolExpectile’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘locpolExpectile’ +* removing ‘/tmp/workdir/locpolExpectile/old/locpolExpectile.Rcheck/locpolExpectile’ + + +``` +# loon.shiny + +
+ +* Version: 1.0.3 +* GitHub: NA +* Source code: https://github.com/cran/loon.shiny +* Date/Publication: 2022-10-08 15:30:02 UTC +* Number of recursive dependencies: 136 + +Run `revdepcheck::cloud_details(, "loon.shiny")` for more info + +
+ +## Error before installation + +### Devel + +``` +* using log directory ‘/tmp/workdir/loon.shiny/new/loon.shiny.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 + GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 +* running under: Ubuntu 24.04.1 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘loon.shiny/DESCRIPTION’ ... OK +... +* this is package ‘loon.shiny’ version ‘1.0.3’ +* package encoding: UTF-8 +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Packages required but not available: 'loon', 'loon.ggplot' + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + + + +``` +### CRAN + +``` +* using log directory ‘/tmp/workdir/loon.shiny/old/loon.shiny.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 + GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 +* running under: Ubuntu 24.04.1 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘loon.shiny/DESCRIPTION’ ... OK +... +* this is package ‘loon.shiny’ version ‘1.0.3’ +* package encoding: UTF-8 +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Packages required but not available: 'loon', 'loon.ggplot' + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + + + +``` +# loon.tourr + +
+ +* Version: 0.1.4 +* GitHub: https://github.com/z267xu/loon.tourr +* Source code: https://github.com/cran/loon.tourr +* Date/Publication: 2024-04-09 09:40:02 UTC +* Number of recursive dependencies: 127 + +Run `revdepcheck::cloud_details(, "loon.tourr")` for more info + +
+ +## Error before installation + +### Devel + +``` +* using log directory ‘/tmp/workdir/loon.tourr/new/loon.tourr.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 + GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 +* running under: Ubuntu 24.04.1 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘loon.tourr/DESCRIPTION’ ... OK +... +* this is package ‘loon.tourr’ version ‘0.1.4’ +* package encoding: UTF-8 +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Packages required but not available: 'loon', 'loon.ggplot' + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + + + +``` +### CRAN + +``` +* using log directory ‘/tmp/workdir/loon.tourr/old/loon.tourr.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 + GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 +* running under: Ubuntu 24.04.1 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘loon.tourr/DESCRIPTION’ ... OK +... +* this is package ‘loon.tourr’ version ‘0.1.4’ +* package encoding: UTF-8 +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Packages required but not available: 'loon', 'loon.ggplot' + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + + + +``` +# lsirm12pl + +
+ +* Version: 1.3.3 +* GitHub: NA +* Source code: https://github.com/cran/lsirm12pl +* Date/Publication: 2024-08-28 23:00:02 UTC +* Number of recursive dependencies: 123 + +Run `revdepcheck::cloud_details(, "lsirm12pl")` for more info + +
+ +## In both + +* checking whether package ‘lsirm12pl’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/lsirm12pl/new/lsirm12pl.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘lsirm12pl’ ... +** package ‘lsirm12pl’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c lsirm1pl.cpp -o lsirm1pl.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c lsirm2pl.cpp -o lsirm2pl.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c lsm.cpp -o lsm.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c utility_cpp.cpp -o utility_cpp.o +... +** R +** data +*** moving datasets to lazyload DB +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘lsirm12pl’ +* removing ‘/tmp/workdir/lsirm12pl/new/lsirm12pl.Rcheck/lsirm12pl’ + + +``` +### CRAN + +``` +* installing *source* package ‘lsirm12pl’ ... +** package ‘lsirm12pl’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c lsirm1pl.cpp -o lsirm1pl.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c lsirm2pl.cpp -o lsirm2pl.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c lsm.cpp -o lsm.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c utility_cpp.cpp -o utility_cpp.o +... +** R +** data +*** moving datasets to lazyload DB +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘lsirm12pl’ +* removing ‘/tmp/workdir/lsirm12pl/old/lsirm12pl.Rcheck/lsirm12pl’ + + +``` +# marlod + +
+ +* Version: 0.1.1 +* GitHub: NA +* Source code: https://github.com/cran/marlod +* Date/Publication: 2024-08-27 22:00:02 UTC +* Number of recursive dependencies: 106 + +Run `revdepcheck::cloud_details(, "marlod")` for more info + +
+ +## In both + +* checking whether package ‘marlod’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/marlod/new/marlod.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘marlod’ ... +** package ‘marlod’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘marlod’ +* removing ‘/tmp/workdir/marlod/new/marlod.Rcheck/marlod’ + + +``` +### CRAN + +``` +* installing *source* package ‘marlod’ ... +** package ‘marlod’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘marlod’ +* removing ‘/tmp/workdir/marlod/old/marlod.Rcheck/marlod’ + + +``` +# mbsts + +
+ +* Version: 3.0 +* GitHub: NA +* Source code: https://github.com/cran/mbsts +* Date/Publication: 2023-01-07 01:10:02 UTC +* Number of recursive dependencies: 81 + +Run `revdepcheck::cloud_details(, "mbsts")` for more info + +
+ +## In both + +* checking whether package ‘mbsts’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/mbsts/new/mbsts.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘mbsts’ ... +** package ‘mbsts’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘mbsts’ +* removing ‘/tmp/workdir/mbsts/new/mbsts.Rcheck/mbsts’ + + +``` +### CRAN + +``` +* installing *source* package ‘mbsts’ ... +** package ‘mbsts’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘mbsts’ +* removing ‘/tmp/workdir/mbsts/old/mbsts.Rcheck/mbsts’ + + +``` +# metajam + +
+ +* Version: 0.3.1 +* GitHub: https://github.com/NCEAS/metajam +* Source code: https://github.com/cran/metajam +* Date/Publication: 2024-08-16 17:50:02 UTC +* Number of recursive dependencies: 90 + +Run `revdepcheck::cloud_details(, "metajam")` for more info + +
+ +## In both + +* checking whether package ‘metajam’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/metajam/new/metajam.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘metajam’ ... +** package ‘metajam’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** inst +** byte-compile and prepare package for lazy loading +Error in dyn.load(file, DLLpath = DLLpath, ...) : + unable to load shared object '/usr/local/lib/R/site-library/redland/libs/redland.so': + librdf.so.0: cannot open shared object file: No such file or directory +Calls: ... namespaceImport -> loadNamespace -> library.dynam -> dyn.load +Execution halted +ERROR: lazy loading failed for package ‘metajam’ +* removing ‘/tmp/workdir/metajam/new/metajam.Rcheck/metajam’ + + +``` +### CRAN + +``` +* installing *source* package ‘metajam’ ... +** package ‘metajam’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** inst +** byte-compile and prepare package for lazy loading +Error in dyn.load(file, DLLpath = DLLpath, ...) : + unable to load shared object '/usr/local/lib/R/site-library/redland/libs/redland.so': + librdf.so.0: cannot open shared object file: No such file or directory +Calls: ... namespaceImport -> loadNamespace -> library.dynam -> dyn.load +Execution halted +ERROR: lazy loading failed for package ‘metajam’ +* removing ‘/tmp/workdir/metajam/old/metajam.Rcheck/metajam’ + + +``` +# mHMMbayes + +
+ +* Version: 1.1.0 +* GitHub: https://github.com/emmekeaarts/mHMMbayes +* Source code: https://github.com/cran/mHMMbayes +* Date/Publication: 2024-04-01 12:20:02 UTC +* Number of recursive dependencies: 57 + +Run `revdepcheck::cloud_details(, "mHMMbayes")` for more info + +
+ +## In both + +* checking whether package ‘mHMMbayes’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/mHMMbayes/new/mHMMbayes.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘mHMMbayes’ ... +** package ‘mHMMbayes’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c cat_mult_fw_cpp.cpp -o cat_mult_fw_cpp.o +g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o mHMMbayes.so RcppExports.o cat_mult_fw_cpp.o -L/opt/R/4.3.1/lib/R/lib -lR +installing to /tmp/workdir/mHMMbayes/new/mHMMbayes.Rcheck/00LOCK-mHMMbayes/00new/mHMMbayes/libs +** R +... +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘mHMMbayes’ +* removing ‘/tmp/workdir/mHMMbayes/new/mHMMbayes.Rcheck/mHMMbayes’ + + +``` +### CRAN + +``` +* installing *source* package ‘mHMMbayes’ ... +** package ‘mHMMbayes’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c cat_mult_fw_cpp.cpp -o cat_mult_fw_cpp.o +g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o mHMMbayes.so RcppExports.o cat_mult_fw_cpp.o -L/opt/R/4.3.1/lib/R/lib -lR +installing to /tmp/workdir/mHMMbayes/old/mHMMbayes.Rcheck/00LOCK-mHMMbayes/00new/mHMMbayes/libs +** R +... +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘mHMMbayes’ +* removing ‘/tmp/workdir/mHMMbayes/old/mHMMbayes.Rcheck/mHMMbayes’ + + +``` +# midasr + +
+ +* Version: 0.8 +* GitHub: https://github.com/mpiktas/midasr +* Source code: https://github.com/cran/midasr +* Date/Publication: 2021-02-23 09:40:05 UTC +* Number of recursive dependencies: 80 + +Run `revdepcheck::cloud_details(, "midasr")` for more info + +
+ +## In both + +* checking whether package ‘midasr’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/midasr/new/midasr.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘midasr’ ... +** package ‘midasr’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +** demo +** inst +** byte-compile and prepare package for lazy loading +Error: package or namespace load failed for ‘quantreg’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Execution halted +ERROR: lazy loading failed for package ‘midasr’ +* removing ‘/tmp/workdir/midasr/new/midasr.Rcheck/midasr’ + + +``` +### CRAN + +``` +* installing *source* package ‘midasr’ ... +** package ‘midasr’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +** demo +** inst +** byte-compile and prepare package for lazy loading +Error: package or namespace load failed for ‘quantreg’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Execution halted +ERROR: lazy loading failed for package ‘midasr’ +* removing ‘/tmp/workdir/midasr/old/midasr.Rcheck/midasr’ + + +``` +# miWQS + +
+ +* Version: 0.4.4 +* GitHub: https://github.com/phargarten2/miWQS +* Source code: https://github.com/cran/miWQS +* Date/Publication: 2021-04-02 21:50:02 UTC +* Number of recursive dependencies: 148 + +Run `revdepcheck::cloud_details(, "miWQS")` for more info + +
+ +## In both + +* checking whether package ‘miWQS’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/miWQS/new/miWQS.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘miWQS’ ... +** package ‘miWQS’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘miWQS’ +* removing ‘/tmp/workdir/miWQS/new/miWQS.Rcheck/miWQS’ + + +``` +### CRAN + +``` +* installing *source* package ‘miWQS’ ... +** package ‘miWQS’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘miWQS’ +* removing ‘/tmp/workdir/miWQS/old/miWQS.Rcheck/miWQS’ + + +``` +# mixAR + +
+ +* Version: 0.22.8 +* GitHub: https://github.com/GeoBosh/mixAR +* Source code: https://github.com/cran/mixAR +* Date/Publication: 2023-12-19 01:40:02 UTC +* Number of recursive dependencies: 96 + +Run `revdepcheck::cloud_details(, "mixAR")` for more info + +
+ +## In both + +* checking whether package ‘mixAR’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/mixAR/new/mixAR.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘mixAR’ ... +** package ‘mixAR’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘mixAR’ +* removing ‘/tmp/workdir/mixAR/new/mixAR.Rcheck/mixAR’ + + +``` +### CRAN + +``` +* installing *source* package ‘mixAR’ ... +** package ‘mixAR’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘mixAR’ +* removing ‘/tmp/workdir/mixAR/old/mixAR.Rcheck/mixAR’ + + +``` +# mlmts + +
+ +* Version: 1.1.2 +* GitHub: NA +* Source code: https://github.com/cran/mlmts +* Date/Publication: 2024-08-18 08:40:06 UTC +* Number of recursive dependencies: 241 + +Run `revdepcheck::cloud_details(, "mlmts")` for more info + +
+ +## In both + +* checking whether package ‘mlmts’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/mlmts/new/mlmts.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘mlmts’ ... +** package ‘mlmts’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error : package or namespace load failed for ‘quantspec’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Error: unable to load R code in package ‘mlmts’ +Execution halted +ERROR: lazy loading failed for package ‘mlmts’ +* removing ‘/tmp/workdir/mlmts/new/mlmts.Rcheck/mlmts’ + + +``` +### CRAN + +``` +* installing *source* package ‘mlmts’ ... +** package ‘mlmts’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error : package or namespace load failed for ‘quantspec’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Error: unable to load R code in package ‘mlmts’ +Execution halted +ERROR: lazy loading failed for package ‘mlmts’ +* removing ‘/tmp/workdir/mlmts/old/mlmts.Rcheck/mlmts’ + + +``` +# mlr + +
+ +* Version: 2.19.2 +* GitHub: https://github.com/mlr-org/mlr +* Source code: https://github.com/cran/mlr +* Date/Publication: 2024-06-12 10:50:02 UTC +* Number of recursive dependencies: 361 + +Run `revdepcheck::cloud_details(, "mlr")` for more info + +
+ +## Error before installation + +### Devel + +``` +* using log directory ‘/tmp/workdir/mlr/new/mlr.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 + GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 +* running under: Ubuntu 24.04.1 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘mlr/DESCRIPTION’ ... OK +... +* checking for unstated dependencies in ‘tests’ ... OK +* checking tests ... OK + Running ‘testthat.R’ +* checking for unstated dependencies in vignettes ... OK +* checking package vignettes in ‘inst/doc’ ... OK +* checking running R code from vignettes ... OK + ‘mlr.Rmd’ using ‘UTF-8’... OK +* checking re-building of vignette outputs ... OK +* DONE +Status: 2 NOTEs + + + + + +``` +### CRAN + +``` +* using log directory ‘/tmp/workdir/mlr/old/mlr.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 + GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 +* running under: Ubuntu 24.04.1 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘mlr/DESCRIPTION’ ... OK +... +* checking for unstated dependencies in ‘tests’ ... OK +* checking tests ... OK + Running ‘testthat.R’ +* checking for unstated dependencies in vignettes ... OK +* checking package vignettes in ‘inst/doc’ ... OK +* checking running R code from vignettes ... OK + ‘mlr.Rmd’ using ‘UTF-8’... OK +* checking re-building of vignette outputs ... OK +* DONE +Status: 2 NOTEs + + + + + +``` +# modeLLtest + +
+ +* Version: 1.0.4 +* GitHub: https://github.com/ShanaScogin/modeLLtest +* Source code: https://github.com/cran/modeLLtest +* Date/Publication: 2022-05-05 23:20:17 UTC +* Number of recursive dependencies: 51 + +Run `revdepcheck::cloud_details(, "modeLLtest")` for more info + +
+ +## In both + +* checking whether package ‘modeLLtest’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/modeLLtest/new/modeLLtest.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘modeLLtest’ ... +** package ‘modeLLtest’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ +using C++11 +g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c cvll_mr.cpp -o cvll_mr.o +g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c cvll_ols.cpp -o cvll_ols.o +g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c cvll_rlm_m.cpp -o cvll_rlm_m.o +... +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘modeLLtest’ +* removing ‘/tmp/workdir/modeLLtest/new/modeLLtest.Rcheck/modeLLtest’ + + +``` +### CRAN + +``` +* installing *source* package ‘modeLLtest’ ... +** package ‘modeLLtest’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ +using C++11 +g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c cvll_mr.cpp -o cvll_mr.o +g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c cvll_ols.cpp -o cvll_ols.o +g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c cvll_rlm_m.cpp -o cvll_rlm_m.o +... +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘modeLLtest’ +* removing ‘/tmp/workdir/modeLLtest/old/modeLLtest.Rcheck/modeLLtest’ + + +``` +# multilevelmediation + +
+ +* Version: 0.3.1 +* GitHub: https://github.com/falkcarl/multilevelmediation +* Source code: https://github.com/cran/multilevelmediation +* Date/Publication: 2024-02-29 11:50:05 UTC +* Number of recursive dependencies: 97 + +Run `revdepcheck::cloud_details(, "multilevelmediation")` for more info + +
+ +## In both + +* checking whether package ‘multilevelmediation’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/multilevelmediation/new/multilevelmediation.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘multilevelmediation’ ... +** package ‘multilevelmediation’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘multilevelmediation’ +* removing ‘/tmp/workdir/multilevelmediation/new/multilevelmediation.Rcheck/multilevelmediation’ + + +``` +### CRAN + +``` +* installing *source* package ‘multilevelmediation’ ... +** package ‘multilevelmediation’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘multilevelmediation’ +* removing ‘/tmp/workdir/multilevelmediation/old/multilevelmediation.Rcheck/multilevelmediation’ + + +``` +# multilevelTools + +
+ +* Version: 0.1.1 +* GitHub: https://github.com/JWiley/multilevelTools +* Source code: https://github.com/cran/multilevelTools +* Date/Publication: 2020-03-04 09:50:02 UTC +* Number of recursive dependencies: 167 + +Run `revdepcheck::cloud_details(, "multilevelTools")` for more info + +
+ +## In both + +* checking whether package ‘multilevelTools’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/multilevelTools/new/multilevelTools.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘multilevelTools’ ... +** package ‘multilevelTools’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** inst +** byte-compile and prepare package for lazy loading +Warning in check_dep_version() : + ABI version mismatch: +lme4 was built with Matrix ABI version 1 +Current Matrix ABI version is 0 +Please re-install lme4 from source or restore original ‘Matrix’ package +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘multilevelTools’ +* removing ‘/tmp/workdir/multilevelTools/new/multilevelTools.Rcheck/multilevelTools’ + + +``` +### CRAN + +``` +* installing *source* package ‘multilevelTools’ ... +** package ‘multilevelTools’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** inst +** byte-compile and prepare package for lazy loading +Warning in check_dep_version() : + ABI version mismatch: +lme4 was built with Matrix ABI version 1 +Current Matrix ABI version is 0 +Please re-install lme4 from source or restore original ‘Matrix’ package +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘multilevelTools’ +* removing ‘/tmp/workdir/multilevelTools/old/multilevelTools.Rcheck/multilevelTools’ + + +``` +# NCA + +
+ +* Version: 4.0.1 +* GitHub: NA +* Source code: https://github.com/cran/NCA +* Date/Publication: 2024-02-23 09:30:15 UTC +* Number of recursive dependencies: 98 + +Run `revdepcheck::cloud_details(, "NCA")` for more info + +
+ +## In both + +* checking whether package ‘NCA’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/NCA/new/NCA.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘NCA’ ... +** package ‘NCA’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘NCA’ +* removing ‘/tmp/workdir/NCA/new/NCA.Rcheck/NCA’ + + +``` +### CRAN + +``` +* installing *source* package ‘NCA’ ... +** package ‘NCA’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘NCA’ +* removing ‘/tmp/workdir/NCA/old/NCA.Rcheck/NCA’ + + +``` +# netcmc + +
+ +* Version: 1.0.2 +* GitHub: NA +* Source code: https://github.com/cran/netcmc +* Date/Publication: 2022-11-08 22:30:15 UTC +* Number of recursive dependencies: 60 + +Run `revdepcheck::cloud_details(, "netcmc")` for more info + +
+ +## In both + +* checking whether package ‘netcmc’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/netcmc/new/netcmc.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘netcmc’ ... +** package ‘netcmc’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ +using C++11 +g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I'/usr/local/lib/R/site-library/RcppProgress/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I'/usr/local/lib/R/site-library/RcppProgress/include' -I/usr/local/include -fpic -g -O2 -c choleskyDecompositionRcppConversion.cpp -o choleskyDecompositionRcppConversion.o +g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I'/usr/local/lib/R/site-library/RcppProgress/include' -I/usr/local/include -fpic -g -O2 -c doubleMatrixMultiplicationRcpp.cpp -o doubleMatrixMultiplicationRcpp.o +g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I'/usr/local/lib/R/site-library/RcppProgress/include' -I/usr/local/include -fpic -g -O2 -c doubleVectorMultiplicationRcpp.cpp -o doubleVectorMultiplicationRcpp.o +... +g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I'/usr/local/lib/R/site-library/RcppProgress/include' -I/usr/local/include -fpic -g -O2 -c vectorVectorTransposeMultiplicationRcpp.cpp -o vectorVectorTransposeMultiplicationRcpp.o +g++ -std=gnu++11 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o netcmc.so RcppExports.o choleskyDecompositionRcppConversion.o doubleMatrixMultiplicationRcpp.o doubleVectorMultiplicationRcpp.o eigenValuesRcppConversion.o getDiagonalMatrix.o getExp.o getExpDividedByOnePlusExp.o getMeanCenteredRandomEffects.o getMultivariateBinomialNetworkLerouxDIC.o getMultivariateBinomialNetworkLerouxFittedValuesAndLikelihoodForDICEveryIteration.o getMultivariateGaussianNetworkLerouxDIC.o getMultivariateGaussianNetworkLerouxFittedValuesAndLikelihoodForDICEveryIteration.o getMultivariatePoissonNetworkLerouxDIC.o getMultivariatePoissonNetworkLerouxFittedValuesAndLikelihoodForDICEveryIteration.o getNonZeroEntries.o getSubvector.o getSubvectorIndecies.o getSumExpNetwork.o getSumExpNetworkIndecies.o getSumExpNetworkLeroux.o getSumExpNetworkLerouxIndecies.o getSumLogExp.o getSumLogExpIndecies.o getSumVector.o getTripletForm.o getUnivariateBinomialNetworkLerouxDIC.o getUnivariateBinomialNetworkLerouxFittedValuesAndLikelihoodForDICEveryIteration.o getUnivariateGaussianNetworkLerouxDIC.o getUnivariateGaussianNetworkLerouxFittedValuesAndLikelihoodForDICEveryIteration.o getUnivariatePoissonNetworkDIC.o getUnivariatePoissonNetworkFittedValuesAndLikelihoodForDICEveryIteration.o getUnivariatePoissonNetworkLerouxDIC.o getUnivariatePoissonNetworkLerouxFittedValuesAndLikelihoodForDICEveryIteration.o getVectorMean.o matrixInverseRcppConversion.o matrixMatrixAdditionRcpp.o matrixMatrixSubtractionRcpp.o matrixVectorMultiplicationRcpp.o multivariateBinomialNetworkLerouxAllUpdate.o multivariateBinomialNetworkLerouxBetaUpdate.o multivariateBinomialNetworkLerouxRhoUpdate.o multivariateBinomialNetworkLerouxSingleUpdate.o multivariateBinomialNetworkLerouxSpatialRandomEffectsUpdate.o multivariateBinomialNetworkLerouxTauSquaredUpdate.o multivariateBinomialNetworkLerouxURandomEffectsUpdate.o multivariateBinomialNetworkLerouxVRandomEffectsUpdate.o multivariateBinomialNetworkLerouxVarianceCovarianceUUpdate.o multivariateBinomialNetworkRandAllUpdate.o multivariateBinomialNetworkRandSingleUpdate.o multivariateGaussianNetworkLerouxAllMHUpdate.o multivariateGaussianNetworkLerouxBetaUpdate.o multivariateGaussianNetworkLerouxRhoUpdate.o multivariateGaussianNetworkLerouxSigmaSquaredEUpdate.o multivariateGaussianNetworkLerouxSingleMHUpdate.o multivariateGaussianNetworkLerouxSpatialRandomEffectsMHUpdate.o multivariateGaussianNetworkLerouxTauSquaredUpdate.o multivariateGaussianNetworkLerouxURandomEffectsUpdate.o multivariateGaussianNetworkLerouxVarianceCovarianceUUpdate.o multivariateGaussianNetworkRandAllUpdate.o multivariateGaussianNetworkRandSingleUpdate.o multivariateGaussianNetworkRandVRandomEffectsUpdate.o multivariatePoissonNetworkLerouxAllUpdate.o multivariatePoissonNetworkLerouxBetaUpdate.o multivariatePoissonNetworkLerouxRhoUpdate.o multivariatePoissonNetworkLerouxSingleUpdate.o multivariatePoissonNetworkLerouxSpatialRandomEffectsUpdate.o multivariatePoissonNetworkLerouxTauSquaredUpdate.o multivariatePoissonNetworkLerouxURandomEffectsUpdate.o multivariatePoissonNetworkLerouxVRandomEffectsUpdate.o multivariatePoissonNetworkLerouxVarianceCovarianceUUpdate.o multivariatePoissonNetworkRandAllUpdate.o multivariatePoissonNetworkRandSingleUpdate.o sumMatrix.o univariateBinomialNetworkLerouxAllUpdate.o univariateBinomialNetworkLerouxBetaUpdate.o univariateBinomialNetworkLerouxRhoUpdate.o univariateBinomialNetworkLerouxSigmaSquaredUpdate.o univariateBinomialNetworkLerouxSingleUpdate.o univariateBinomialNetworkLerouxSpatialRandomEffectsUpdate.o univariateBinomialNetworkLerouxTauSquaredUpdate.o univariateBinomialNetworkLerouxURandomEffectsUpdate.o univariateGaussianNetworkLerouxAllMHUpdate.o univariateGaussianNetworkLerouxBetaUpdate.o univariateGaussianNetworkLerouxRhoUpdate.o univariateGaussianNetworkLerouxSigmaSquaredEUpdate.o univariateGaussianNetworkLerouxSigmaSquaredUUpdate.o univariateGaussianNetworkLerouxSingleMHUpdate.o univariateGaussianNetworkLerouxSpatialRandomEffectsMHUpdate.o univariateGaussianNetworkLerouxTauSquaredUpdate.o univariateGaussianNetworkLerouxURandomEffectsUpdate.o univariatePoissonNetworkLerouxAllUpdate.o univariatePoissonNetworkLerouxBetaUpdate.o univariatePoissonNetworkLerouxRhoUpdate.o univariatePoissonNetworkLerouxSigmaSquaredUpdate.o univariatePoissonNetworkLerouxSingleUpdate.o univariatePoissonNetworkLerouxSpatialRandomEffectsUpdate.o univariatePoissonNetworkLerouxTauSquaredUpdate.o univariatePoissonNetworkLerouxURandomEffectsUpdate.o vectorTransposeVectorMultiplicationRcpp.o vectorVectorTransposeMultiplicationRcpp.o -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR +installing to /tmp/workdir/netcmc/new/netcmc.Rcheck/00LOCK-netcmc/00new/netcmc/libs +** R +** byte-compile and prepare package for lazy loading +Error: package or namespace load failed for ‘MCMCpack’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Execution halted +ERROR: lazy loading failed for package ‘netcmc’ +* removing ‘/tmp/workdir/netcmc/new/netcmc.Rcheck/netcmc’ + + +``` +### CRAN + +``` +* installing *source* package ‘netcmc’ ... +** package ‘netcmc’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ +using C++11 +g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I'/usr/local/lib/R/site-library/RcppProgress/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I'/usr/local/lib/R/site-library/RcppProgress/include' -I/usr/local/include -fpic -g -O2 -c choleskyDecompositionRcppConversion.cpp -o choleskyDecompositionRcppConversion.o +g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I'/usr/local/lib/R/site-library/RcppProgress/include' -I/usr/local/include -fpic -g -O2 -c doubleMatrixMultiplicationRcpp.cpp -o doubleMatrixMultiplicationRcpp.o +g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I'/usr/local/lib/R/site-library/RcppProgress/include' -I/usr/local/include -fpic -g -O2 -c doubleVectorMultiplicationRcpp.cpp -o doubleVectorMultiplicationRcpp.o +... +g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I'/usr/local/lib/R/site-library/RcppProgress/include' -I/usr/local/include -fpic -g -O2 -c vectorVectorTransposeMultiplicationRcpp.cpp -o vectorVectorTransposeMultiplicationRcpp.o +g++ -std=gnu++11 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o netcmc.so RcppExports.o choleskyDecompositionRcppConversion.o doubleMatrixMultiplicationRcpp.o doubleVectorMultiplicationRcpp.o eigenValuesRcppConversion.o getDiagonalMatrix.o getExp.o getExpDividedByOnePlusExp.o getMeanCenteredRandomEffects.o getMultivariateBinomialNetworkLerouxDIC.o getMultivariateBinomialNetworkLerouxFittedValuesAndLikelihoodForDICEveryIteration.o getMultivariateGaussianNetworkLerouxDIC.o getMultivariateGaussianNetworkLerouxFittedValuesAndLikelihoodForDICEveryIteration.o getMultivariatePoissonNetworkLerouxDIC.o getMultivariatePoissonNetworkLerouxFittedValuesAndLikelihoodForDICEveryIteration.o getNonZeroEntries.o getSubvector.o getSubvectorIndecies.o getSumExpNetwork.o getSumExpNetworkIndecies.o getSumExpNetworkLeroux.o getSumExpNetworkLerouxIndecies.o getSumLogExp.o getSumLogExpIndecies.o getSumVector.o getTripletForm.o getUnivariateBinomialNetworkLerouxDIC.o getUnivariateBinomialNetworkLerouxFittedValuesAndLikelihoodForDICEveryIteration.o getUnivariateGaussianNetworkLerouxDIC.o getUnivariateGaussianNetworkLerouxFittedValuesAndLikelihoodForDICEveryIteration.o getUnivariatePoissonNetworkDIC.o getUnivariatePoissonNetworkFittedValuesAndLikelihoodForDICEveryIteration.o getUnivariatePoissonNetworkLerouxDIC.o getUnivariatePoissonNetworkLerouxFittedValuesAndLikelihoodForDICEveryIteration.o getVectorMean.o matrixInverseRcppConversion.o matrixMatrixAdditionRcpp.o matrixMatrixSubtractionRcpp.o matrixVectorMultiplicationRcpp.o multivariateBinomialNetworkLerouxAllUpdate.o multivariateBinomialNetworkLerouxBetaUpdate.o multivariateBinomialNetworkLerouxRhoUpdate.o multivariateBinomialNetworkLerouxSingleUpdate.o multivariateBinomialNetworkLerouxSpatialRandomEffectsUpdate.o multivariateBinomialNetworkLerouxTauSquaredUpdate.o multivariateBinomialNetworkLerouxURandomEffectsUpdate.o multivariateBinomialNetworkLerouxVRandomEffectsUpdate.o multivariateBinomialNetworkLerouxVarianceCovarianceUUpdate.o multivariateBinomialNetworkRandAllUpdate.o multivariateBinomialNetworkRandSingleUpdate.o multivariateGaussianNetworkLerouxAllMHUpdate.o multivariateGaussianNetworkLerouxBetaUpdate.o multivariateGaussianNetworkLerouxRhoUpdate.o multivariateGaussianNetworkLerouxSigmaSquaredEUpdate.o multivariateGaussianNetworkLerouxSingleMHUpdate.o multivariateGaussianNetworkLerouxSpatialRandomEffectsMHUpdate.o multivariateGaussianNetworkLerouxTauSquaredUpdate.o multivariateGaussianNetworkLerouxURandomEffectsUpdate.o multivariateGaussianNetworkLerouxVarianceCovarianceUUpdate.o multivariateGaussianNetworkRandAllUpdate.o multivariateGaussianNetworkRandSingleUpdate.o multivariateGaussianNetworkRandVRandomEffectsUpdate.o multivariatePoissonNetworkLerouxAllUpdate.o multivariatePoissonNetworkLerouxBetaUpdate.o multivariatePoissonNetworkLerouxRhoUpdate.o multivariatePoissonNetworkLerouxSingleUpdate.o multivariatePoissonNetworkLerouxSpatialRandomEffectsUpdate.o multivariatePoissonNetworkLerouxTauSquaredUpdate.o multivariatePoissonNetworkLerouxURandomEffectsUpdate.o multivariatePoissonNetworkLerouxVRandomEffectsUpdate.o multivariatePoissonNetworkLerouxVarianceCovarianceUUpdate.o multivariatePoissonNetworkRandAllUpdate.o multivariatePoissonNetworkRandSingleUpdate.o sumMatrix.o univariateBinomialNetworkLerouxAllUpdate.o univariateBinomialNetworkLerouxBetaUpdate.o univariateBinomialNetworkLerouxRhoUpdate.o univariateBinomialNetworkLerouxSigmaSquaredUpdate.o univariateBinomialNetworkLerouxSingleUpdate.o univariateBinomialNetworkLerouxSpatialRandomEffectsUpdate.o univariateBinomialNetworkLerouxTauSquaredUpdate.o univariateBinomialNetworkLerouxURandomEffectsUpdate.o univariateGaussianNetworkLerouxAllMHUpdate.o univariateGaussianNetworkLerouxBetaUpdate.o univariateGaussianNetworkLerouxRhoUpdate.o univariateGaussianNetworkLerouxSigmaSquaredEUpdate.o univariateGaussianNetworkLerouxSigmaSquaredUUpdate.o univariateGaussianNetworkLerouxSingleMHUpdate.o univariateGaussianNetworkLerouxSpatialRandomEffectsMHUpdate.o univariateGaussianNetworkLerouxTauSquaredUpdate.o univariateGaussianNetworkLerouxURandomEffectsUpdate.o univariatePoissonNetworkLerouxAllUpdate.o univariatePoissonNetworkLerouxBetaUpdate.o univariatePoissonNetworkLerouxRhoUpdate.o univariatePoissonNetworkLerouxSigmaSquaredUpdate.o univariatePoissonNetworkLerouxSingleUpdate.o univariatePoissonNetworkLerouxSpatialRandomEffectsUpdate.o univariatePoissonNetworkLerouxTauSquaredUpdate.o univariatePoissonNetworkLerouxURandomEffectsUpdate.o vectorTransposeVectorMultiplicationRcpp.o vectorVectorTransposeMultiplicationRcpp.o -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR +installing to /tmp/workdir/netcmc/old/netcmc.Rcheck/00LOCK-netcmc/00new/netcmc/libs +** R +** byte-compile and prepare package for lazy loading +Error: package or namespace load failed for ‘MCMCpack’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Execution halted +ERROR: lazy loading failed for package ‘netcmc’ +* removing ‘/tmp/workdir/netcmc/old/netcmc.Rcheck/netcmc’ + + +``` +# newIMVC + +
+ +* Version: 0.1.0 +* GitHub: NA +* Source code: https://github.com/cran/newIMVC +* Date/Publication: 2024-04-16 14:50:13 UTC +* Number of recursive dependencies: 54 + +Run `revdepcheck::cloud_details(, "newIMVC")` for more info + +
+ +## In both + +* checking whether package ‘newIMVC’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/newIMVC/new/newIMVC.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘newIMVC’ ... +** package ‘newIMVC’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘newIMVC’ +* removing ‘/tmp/workdir/newIMVC/new/newIMVC.Rcheck/newIMVC’ + + +``` +### CRAN + +``` +* installing *source* package ‘newIMVC’ ... +** package ‘newIMVC’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘newIMVC’ +* removing ‘/tmp/workdir/newIMVC/old/newIMVC.Rcheck/newIMVC’ + + +``` +# nlpred + +
+ +* Version: 1.0.1 +* GitHub: NA +* Source code: https://github.com/cran/nlpred +* Date/Publication: 2020-02-23 17:30:05 UTC +* Number of recursive dependencies: 103 + +Run `revdepcheck::cloud_details(, "nlpred")` for more info + +
+ +## In both + +* checking whether package ‘nlpred’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/nlpred/new/nlpred.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘nlpred’ ... +** package ‘nlpred’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘nlpred’ +* removing ‘/tmp/workdir/nlpred/new/nlpred.Rcheck/nlpred’ + + +``` +### CRAN + +``` +* installing *source* package ‘nlpred’ ... +** package ‘nlpred’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘nlpred’ +* removing ‘/tmp/workdir/nlpred/old/nlpred.Rcheck/nlpred’ + + +``` +# NMADiagT + +
+ +* Version: 0.1.2 +* GitHub: NA +* Source code: https://github.com/cran/NMADiagT +* Date/Publication: 2020-02-26 07:00:02 UTC +* Number of recursive dependencies: 78 + +Run `revdepcheck::cloud_details(, "NMADiagT")` for more info + +
+ +## In both + +* checking whether package ‘NMADiagT’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/NMADiagT/new/NMADiagT.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘NMADiagT’ ... +** package ‘NMADiagT’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘NMADiagT’ +* removing ‘/tmp/workdir/NMADiagT/new/NMADiagT.Rcheck/NMADiagT’ + + +``` +### CRAN + +``` +* installing *source* package ‘NMADiagT’ ... +** package ‘NMADiagT’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘NMADiagT’ +* removing ‘/tmp/workdir/NMADiagT/old/NMADiagT.Rcheck/NMADiagT’ + + +``` +# nse + +
+ +* Version: 1.21 +* GitHub: https://github.com/keblu/nse +* Source code: https://github.com/cran/nse +* Date/Publication: 2022-11-10 13:20:02 UTC +* Number of recursive dependencies: 44 + +Run `revdepcheck::cloud_details(, "nse")` for more info + +
+ +## In both + +* checking whether package ‘nse’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/nse/new/nse.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘nse’ ... +** package ‘nse’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c f_boot.cpp -o f_boot.o +g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o nse.so RcppExports.o f_boot.o -L/opt/R/4.3.1/lib/R/lib -lR +installing to /tmp/workdir/nse/new/nse.Rcheck/00LOCK-nse/00new/nse/libs +** R +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘nse’ +* removing ‘/tmp/workdir/nse/new/nse.Rcheck/nse’ + + +``` +### CRAN + +``` +* installing *source* package ‘nse’ ... +** package ‘nse’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c f_boot.cpp -o f_boot.o +g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o nse.so RcppExports.o f_boot.o -L/opt/R/4.3.1/lib/R/lib -lR +installing to /tmp/workdir/nse/old/nse.Rcheck/00LOCK-nse/00new/nse/libs +** R +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘nse’ +* removing ‘/tmp/workdir/nse/old/nse.Rcheck/nse’ + + +``` +# OasisR + +
+ +* Version: NA +* GitHub: NA +* Source code: https://github.com/cran/OasisR +* Number of recursive dependencies: 44 + +Run `revdepcheck::cloud_details(, "OasisR")` for more info + +
+ +## Error before installation + +### Devel + +``` + + + + + + +``` +### CRAN + +``` + + + + + + +``` +# paleopop + +
+ +* Version: 2.1.6 +* GitHub: https://github.com/GlobalEcologyLab/paleopop +* Source code: https://github.com/cran/paleopop +* Date/Publication: 2024-09-24 19:00:02 UTC +* Number of recursive dependencies: 102 + +Run `revdepcheck::cloud_details(, "paleopop")` for more info + +
+ +## In both + +* checking whether package ‘paleopop’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/paleopop/new/paleopop.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘paleopop’ ... +** package ‘paleopop’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘paleopop’ +* removing ‘/tmp/workdir/paleopop/new/paleopop.Rcheck/paleopop’ + + +``` +### CRAN + +``` +* installing *source* package ‘paleopop’ ... +** package ‘paleopop’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘paleopop’ +* removing ‘/tmp/workdir/paleopop/old/paleopop.Rcheck/paleopop’ + + +``` +# pammtools + +
+ +* Version: 0.5.93 +* GitHub: https://github.com/adibender/pammtools +* Source code: https://github.com/cran/pammtools +* Date/Publication: 2024-02-25 10:10:02 UTC +* Number of recursive dependencies: 124 + +Run `revdepcheck::cloud_details(, "pammtools")` for more info + +
+ +## Error before installation + +### Devel + +``` +* using log directory ‘/tmp/workdir/pammtools/new/pammtools.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 + GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 +* running under: Ubuntu 24.04.1 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘pammtools/DESCRIPTION’ ... OK +... +* checking data for non-ASCII characters ... OK +* checking LazyData ... OK +* checking data for ASCII and uncompressed saves ... OK +* checking R/sysdata.rda ... OK +* checking examples ... OK +* checking for unstated dependencies in ‘tests’ ... OK +* checking tests ... OK + Running ‘testthat.R’ +* DONE +Status: OK + + + + + +``` +### CRAN + +``` +* using log directory ‘/tmp/workdir/pammtools/old/pammtools.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 + GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 +* running under: Ubuntu 24.04.1 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘pammtools/DESCRIPTION’ ... OK +... +* checking data for non-ASCII characters ... OK +* checking LazyData ... OK +* checking data for ASCII and uncompressed saves ... OK +* checking R/sysdata.rda ... OK +* checking examples ... OK +* checking for unstated dependencies in ‘tests’ ... OK +* checking tests ... OK + Running ‘testthat.R’ +* DONE +Status: OK + + + + + +``` +# params + +
+ +* Version: 0.7.3 +* GitHub: https://github.com/sahilseth/params +* Source code: https://github.com/cran/params +* Date/Publication: 2021-03-01 20:00:06 UTC +* Number of recursive dependencies: 0 + +Run `revdepcheck::cloud_details(, "params")` for more info + +
+ +## In both + +* checking whether package ‘params’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/params/new/params.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘params’ ... +** package ‘params’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** inst +** byte-compile and prepare package for lazy loading +** help +*** installing help indices +** building package indices +** testing if installed package can be loaded from temporary location +Error: package or namespace load failed for ‘params’: + .onLoad failed in loadNamespace() for 'params', details: + call: glue_data(.x = NULL, ..., .sep = .sep, .envir = .envir, .open = .open, + error: is.environment(.envir) is not TRUE +Error: loading failed +Execution halted +ERROR: loading failed +* removing ‘/tmp/workdir/params/new/params.Rcheck/params’ + + +``` +### CRAN + +``` +* installing *source* package ‘params’ ... +** package ‘params’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** inst +** byte-compile and prepare package for lazy loading +** help +*** installing help indices +** building package indices +** testing if installed package can be loaded from temporary location +Error: package or namespace load failed for ‘params’: + .onLoad failed in loadNamespace() for 'params', details: + call: glue_data(.x = NULL, ..., .sep = .sep, .envir = .envir, .open = .open, + error: is.environment(.envir) is not TRUE +Error: loading failed +Execution halted +ERROR: loading failed +* removing ‘/tmp/workdir/params/old/params.Rcheck/params’ + + +``` +# PathwaySpace + +
+ +* Version: NA +* GitHub: NA +* Source code: https://github.com/cran/PathwaySpace +* Number of recursive dependencies: 69 + +Run `revdepcheck::cloud_details(, "PathwaySpace")` for more info + +
+ +## Error before installation + +### Devel + +``` + + + + + + +``` +### CRAN + +``` + + + + + + +``` +# pcvr + +
+ +* Version: 1.1.1.0 +* GitHub: https://github.com/danforthcenter/pcvr +* Source code: https://github.com/cran/pcvr +* Date/Publication: 2024-11-06 20:50:02 UTC +* Number of recursive dependencies: 189 + +Run `revdepcheck::cloud_details(, "pcvr")` for more info + +
+ +## In both + +* checking whether package ‘pcvr’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/pcvr/new/pcvr.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘pcvr’ ... +** package ‘pcvr’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** inst +** byte-compile and prepare package for lazy loading +Warning in check_dep_version() : + ABI version mismatch: +lme4 was built with Matrix ABI version 1 +Current Matrix ABI version is 0 +Please re-install lme4 from source or restore original ‘Matrix’ package +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘pcvr’ +* removing ‘/tmp/workdir/pcvr/new/pcvr.Rcheck/pcvr’ + + +``` +### CRAN + +``` +* installing *source* package ‘pcvr’ ... +** package ‘pcvr’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** inst +** byte-compile and prepare package for lazy loading +Warning in check_dep_version() : + ABI version mismatch: +lme4 was built with Matrix ABI version 1 +Current Matrix ABI version is 0 +Please re-install lme4 from source or restore original ‘Matrix’ package +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘pcvr’ +* removing ‘/tmp/workdir/pcvr/old/pcvr.Rcheck/pcvr’ + + +``` +# poems + +
+ +* Version: 1.3.1 +* GitHub: https://github.com/GlobalEcologyLab/poems +* Source code: https://github.com/cran/poems +* Date/Publication: 2024-09-19 20:40:03 UTC +* Number of recursive dependencies: 100 + +Run `revdepcheck::cloud_details(, "poems")` for more info + +
+ +## In both + +* checking whether package ‘poems’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/poems/new/poems.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘poems’ ... +** package ‘poems’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘poems’ +* removing ‘/tmp/workdir/poems/new/poems.Rcheck/poems’ + + +``` +### CRAN + +``` +* installing *source* package ‘poems’ ... +** package ‘poems’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘poems’ +* removing ‘/tmp/workdir/poems/old/poems.Rcheck/poems’ + + +``` +# popEpi + +
+ +* Version: 0.4.12 +* GitHub: https://github.com/FinnishCancerRegistry/popEpi +* Source code: https://github.com/cran/popEpi +* Date/Publication: 2024-05-10 09:00:02 UTC +* Number of recursive dependencies: 142 + +Run `revdepcheck::cloud_details(, "popEpi")` for more info + +
+ +## Error before installation + +### Devel + +``` +* using log directory ‘/tmp/workdir/popEpi/new/popEpi.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 + GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 +* running under: Ubuntu 24.04.1 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘popEpi/DESCRIPTION’ ... OK +... + Error: Test failures + Execution halted +* checking for unstated dependencies in vignettes ... OK +* checking package vignettes in ‘inst/doc’ ... OK +* checking running R code from vignettes ... OK + ‘sir.Rmd’ using ‘UTF-8’... OK + ‘survtab_examples.Rmd’ using ‘UTF-8’... OK +* checking re-building of vignette outputs ... OK +* DONE +Status: 1 ERROR + + + + + +``` +### CRAN + +``` +* using log directory ‘/tmp/workdir/popEpi/old/popEpi.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 + GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 +* running under: Ubuntu 24.04.1 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘popEpi/DESCRIPTION’ ... OK +... + Error: Test failures + Execution halted +* checking for unstated dependencies in vignettes ... OK +* checking package vignettes in ‘inst/doc’ ... OK +* checking running R code from vignettes ... OK + ‘sir.Rmd’ using ‘UTF-8’... OK + ‘survtab_examples.Rmd’ using ‘UTF-8’... OK +* checking re-building of vignette outputs ... OK +* DONE +Status: 1 ERROR + + + + + +``` +# popstudy + +
+ +* Version: 1.0.1 +* GitHub: NA +* Source code: https://github.com/cran/popstudy +* Date/Publication: 2023-10-17 23:50:02 UTC +* Number of recursive dependencies: 239 + +Run `revdepcheck::cloud_details(, "popstudy")` for more info + +
+ +## In both + +* checking whether package ‘popstudy’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/popstudy/new/popstudy.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘popstudy’ ... +** package ‘popstudy’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘popstudy’ +* removing ‘/tmp/workdir/popstudy/new/popstudy.Rcheck/popstudy’ + + +``` +### CRAN + +``` +* installing *source* package ‘popstudy’ ... +** package ‘popstudy’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘popstudy’ +* removing ‘/tmp/workdir/popstudy/old/popstudy.Rcheck/popstudy’ + + +``` +# powerly + +
+ +* Version: 1.8.6 +* GitHub: https://github.com/mihaiconstantin/powerly +* Source code: https://github.com/cran/powerly +* Date/Publication: 2022-09-09 14:10:01 UTC +* Number of recursive dependencies: 166 + +Run `revdepcheck::cloud_details(, "powerly")` for more info + +
+ +## In both + +* checking whether package ‘powerly’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/powerly/new/powerly.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘powerly’ ... +** package ‘powerly’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** inst +** byte-compile and prepare package for lazy loading +Warning in check_dep_version() : + ABI version mismatch: +lme4 was built with Matrix ABI version 1 +Current Matrix ABI version is 0 +Please re-install lme4 from source or restore original ‘Matrix’ package +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.1 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘powerly’ +* removing ‘/tmp/workdir/powerly/new/powerly.Rcheck/powerly’ + + +``` +### CRAN + +``` +* installing *source* package ‘powerly’ ... +** package ‘powerly’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** inst +** byte-compile and prepare package for lazy loading +Warning in check_dep_version() : + ABI version mismatch: +lme4 was built with Matrix ABI version 1 +Current Matrix ABI version is 0 +Please re-install lme4 from source or restore original ‘Matrix’ package +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.1 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘powerly’ +* removing ‘/tmp/workdir/powerly/old/powerly.Rcheck/powerly’ + + +``` +# pre + +
+ +* Version: 1.0.7 +* GitHub: https://github.com/marjoleinF/pre +* Source code: https://github.com/cran/pre +* Date/Publication: 2024-01-12 19:30:02 UTC +* Number of recursive dependencies: 150 + +Run `revdepcheck::cloud_details(, "pre")` for more info + +
+ +## In both + +* checking whether package ‘pre’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/pre/new/pre.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘pre’ ... +** package ‘pre’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘pre’ +* removing ‘/tmp/workdir/pre/new/pre.Rcheck/pre’ + + +``` +### CRAN + +``` +* installing *source* package ‘pre’ ... +** package ‘pre’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘pre’ +* removing ‘/tmp/workdir/pre/old/pre.Rcheck/pre’ + + +``` +# pscore + +
+ +* Version: 0.4.0 +* GitHub: https://github.com/JWiley/score-project +* Source code: https://github.com/cran/pscore +* Date/Publication: 2022-05-13 22:30:02 UTC +* Number of recursive dependencies: 168 + +Run `revdepcheck::cloud_details(, "pscore")` for more info + +
+ +## In both + +* checking whether package ‘pscore’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/pscore/new/pscore.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘pscore’ ... +** package ‘pscore’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +** inst +** byte-compile and prepare package for lazy loading +Warning in check_dep_version() : + ABI version mismatch: +lme4 was built with Matrix ABI version 1 +Current Matrix ABI version is 0 +Please re-install lme4 from source or restore original ‘Matrix’ package +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘pscore’ +* removing ‘/tmp/workdir/pscore/new/pscore.Rcheck/pscore’ + + +``` +### CRAN + +``` +* installing *source* package ‘pscore’ ... +** package ‘pscore’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +** inst +** byte-compile and prepare package for lazy loading +Warning in check_dep_version() : + ABI version mismatch: +lme4 was built with Matrix ABI version 1 +Current Matrix ABI version is 0 +Please re-install lme4 from source or restore original ‘Matrix’ package +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘pscore’ +* removing ‘/tmp/workdir/pscore/old/pscore.Rcheck/pscore’ + + +``` +# Publish + +
+ +* Version: 2023.01.17 +* GitHub: NA +* Source code: https://github.com/cran/Publish +* Date/Publication: 2023-01-17 17:40:09 UTC +* Number of recursive dependencies: 122 + +Run `revdepcheck::cloud_details(, "Publish")` for more info + +
+ +## Error before installation + +### Devel + +``` +* using log directory ‘/tmp/workdir/Publish/new/Publish.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 + GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 +* running under: Ubuntu 24.04.1 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘Publish/DESCRIPTION’ ... OK +... + > library(Publish) + Loading required package: prodlim + > library(mitools) + > library(smcfcs) + > library(riskRegression) + Error in library(riskRegression) : + there is no package called 'riskRegression' + Execution halted +* DONE +Status: 2 ERRORs, 1 NOTE + + + + + +``` +### CRAN + +``` +* using log directory ‘/tmp/workdir/Publish/old/Publish.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 + GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 +* running under: Ubuntu 24.04.1 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘Publish/DESCRIPTION’ ... OK +... + > library(Publish) + Loading required package: prodlim + > library(mitools) + > library(smcfcs) + > library(riskRegression) + Error in library(riskRegression) : + there is no package called 'riskRegression' + Execution halted +* DONE +Status: 2 ERRORs, 1 NOTE + + + + + +``` +# qris + +
+ +* Version: 1.1.1 +* GitHub: https://github.com/Kyuhyun07/qris +* Source code: https://github.com/cran/qris +* Date/Publication: 2024-03-05 14:40:03 UTC +* Number of recursive dependencies: 54 + +Run `revdepcheck::cloud_details(, "qris")` for more info + +
+ +## In both + +* checking whether package ‘qris’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/qris/new/qris.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘qris’ ... +** package ‘qris’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C compiler: ‘gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ +using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ +using C++11 +g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c Amat.cpp -o Amat.o +g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c ghat.cpp -o ghat.o +... +installing to /tmp/workdir/qris/new/qris.Rcheck/00LOCK-qris/00new/qris/libs +** R +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘qris’ +* removing ‘/tmp/workdir/qris/new/qris.Rcheck/qris’ + + +``` +### CRAN + +``` +* installing *source* package ‘qris’ ... +** package ‘qris’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C compiler: ‘gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ +using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ +using C++11 +g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c Amat.cpp -o Amat.o +g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c ghat.cpp -o ghat.o +... +installing to /tmp/workdir/qris/old/qris.Rcheck/00LOCK-qris/00new/qris/libs +** R +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘qris’ +* removing ‘/tmp/workdir/qris/old/qris.Rcheck/qris’ + + +``` +# QTOCen + +
+ +* Version: 0.1.1 +* GitHub: NA +* Source code: https://github.com/cran/QTOCen +* Date/Publication: 2019-06-04 12:10:10 UTC +* Number of recursive dependencies: 112 + +Run `revdepcheck::cloud_details(, "QTOCen")` for more info + +
+ +## In both + +* checking whether package ‘QTOCen’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/QTOCen/new/QTOCen.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘QTOCen’ ... +** package ‘QTOCen’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘QTOCen’ +* removing ‘/tmp/workdir/QTOCen/new/QTOCen.Rcheck/QTOCen’ + + +``` +### CRAN + +``` +* installing *source* package ‘QTOCen’ ... +** package ‘QTOCen’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘QTOCen’ +* removing ‘/tmp/workdir/QTOCen/old/QTOCen.Rcheck/QTOCen’ + + +``` +# quantspec + +
+ +* Version: 1.2-4 +* GitHub: https://github.com/tobiaskley/quantspec +* Source code: https://github.com/cran/quantspec +* Date/Publication: 2024-07-11 12:50:02 UTC +* Number of recursive dependencies: 36 + +Run `revdepcheck::cloud_details(, "quantspec")` for more info + +
+ +## In both + +* checking whether package ‘quantspec’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/quantspec/new/quantspec.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘quantspec’ ... +** package ‘quantspec’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c computeCoherency.cpp -o computeCoherency.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c computeSdNaive.cpp -o computeSdNaive.o +g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o quantspec.so RcppExports.o computeCoherency.o computeSdNaive.o -L/opt/R/4.3.1/lib/R/lib -lR +installing to /tmp/workdir/quantspec/new/quantspec.Rcheck/00LOCK-quantspec/00new/quantspec/libs +... +*** moving datasets to lazyload DB +** demo +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘quantspec’ +* removing ‘/tmp/workdir/quantspec/new/quantspec.Rcheck/quantspec’ + + +``` +### CRAN + +``` +* installing *source* package ‘quantspec’ ... +** package ‘quantspec’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c computeCoherency.cpp -o computeCoherency.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c computeSdNaive.cpp -o computeSdNaive.o +g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o quantspec.so RcppExports.o computeCoherency.o computeSdNaive.o -L/opt/R/4.3.1/lib/R/lib -lR +installing to /tmp/workdir/quantspec/old/quantspec.Rcheck/00LOCK-quantspec/00new/quantspec/libs +... +*** moving datasets to lazyload DB +** demo +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘quantspec’ +* removing ‘/tmp/workdir/quantspec/old/quantspec.Rcheck/quantspec’ + + +``` +# quid + +
+ +* Version: 0.0.1 +* GitHub: NA +* Source code: https://github.com/cran/quid +* Date/Publication: 2021-12-09 09:00:02 UTC +* Number of recursive dependencies: 94 + +Run `revdepcheck::cloud_details(, "quid")` for more info + +
+ +## In both + +* checking whether package ‘quid’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/quid/new/quid.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘quid’ ... +** package ‘quid’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘quid’ +* removing ‘/tmp/workdir/quid/new/quid.Rcheck/quid’ + + +``` +### CRAN + +``` +* installing *source* package ‘quid’ ... +** package ‘quid’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘quid’ +* removing ‘/tmp/workdir/quid/old/quid.Rcheck/quid’ + + +``` +# rddtools + +
+ +* Version: 1.6.0 +* GitHub: https://github.com/bquast/rddtools +* Source code: https://github.com/cran/rddtools +* Date/Publication: 2022-01-10 12:42:49 UTC +* Number of recursive dependencies: 105 + +Run `revdepcheck::cloud_details(, "rddtools")` for more info + +
+ +## In both + +* checking whether package ‘rddtools’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/rddtools/new/rddtools.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘rddtools’ ... +** package ‘rddtools’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +** inst +** byte-compile and prepare package for lazy loading +Error: package or namespace load failed for ‘np’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Execution halted +ERROR: lazy loading failed for package ‘rddtools’ +* removing ‘/tmp/workdir/rddtools/new/rddtools.Rcheck/rddtools’ + + +``` +### CRAN + +``` +* installing *source* package ‘rddtools’ ... +** package ‘rddtools’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +** inst +** byte-compile and prepare package for lazy loading +Error: package or namespace load failed for ‘np’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Execution halted +ERROR: lazy loading failed for package ‘rddtools’ +* removing ‘/tmp/workdir/rddtools/old/rddtools.Rcheck/rddtools’ + + +``` +# rdflib + +
+ +* Version: 0.2.9 +* GitHub: https://github.com/ropensci/rdflib +* Source code: https://github.com/cran/rdflib +* Date/Publication: 2024-08-17 06:00:05 UTC +* Number of recursive dependencies: 93 + +Run `revdepcheck::cloud_details(, "rdflib")` for more info + +
+ +## In both + +* checking whether package ‘rdflib’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/rdflib/new/rdflib.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘rdflib’ ... +** package ‘rdflib’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** inst +** byte-compile and prepare package for lazy loading +Error in dyn.load(file, DLLpath = DLLpath, ...) : + unable to load shared object '/usr/local/lib/R/site-library/redland/libs/redland.so': + librdf.so.0: cannot open shared object file: No such file or directory +Calls: ... asNamespace -> loadNamespace -> library.dynam -> dyn.load +Execution halted +ERROR: lazy loading failed for package ‘rdflib’ +* removing ‘/tmp/workdir/rdflib/new/rdflib.Rcheck/rdflib’ + + +``` +### CRAN + +``` +* installing *source* package ‘rdflib’ ... +** package ‘rdflib’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** inst +** byte-compile and prepare package for lazy loading +Error in dyn.load(file, DLLpath = DLLpath, ...) : + unable to load shared object '/usr/local/lib/R/site-library/redland/libs/redland.so': + librdf.so.0: cannot open shared object file: No such file or directory +Calls: ... asNamespace -> loadNamespace -> library.dynam -> dyn.load +Execution halted +ERROR: lazy loading failed for package ‘rdflib’ +* removing ‘/tmp/workdir/rdflib/old/rdflib.Rcheck/rdflib’ + + +``` +# redland + +
+ +* Version: 1.0.17-18 +* GitHub: https://github.com/ropensci/redland-bindings +* Source code: https://github.com/cran/redland +* Date/Publication: 2024-02-24 01:10:02 UTC +* Number of recursive dependencies: 53 + +Run `revdepcheck::cloud_details(, "redland")` for more info + +
+ +## In both + +* checking whether package ‘redland’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/redland/new/redland.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘redland’ ... +** package ‘redland’ successfully unpacked and MD5 sums checked +** using staged installation +Using PKG_CFLAGS= +Using PKG_LIBS=-lrdf +------------------------- ANTICONF ERROR --------------------------- +Configuration failed because redland was not found. Try installing: + * deb: librdf0-dev (Debian, Ubuntu, etc) + * rpm: redland-devel (Fedora, EPEL) + * brew: redland (OSX) +If redland is already installed, check that 'pkg-config' is in your +PATH and PKG_CONFIG_PATH contains a redland.pc file. If pkg-config +is unavailable you can set INCLUDE_DIR and LIB_DIR manually via: +R CMD INSTALL --configure-vars='INCLUDE_DIR=... LIB_DIR=...' +-------------------------------------------------------------------- +ERROR: configuration failed for package ‘redland’ +* removing ‘/tmp/workdir/redland/new/redland.Rcheck/redland’ + + +``` +### CRAN + +``` +* installing *source* package ‘redland’ ... +** package ‘redland’ successfully unpacked and MD5 sums checked +** using staged installation +Using PKG_CFLAGS= +Using PKG_LIBS=-lrdf +------------------------- ANTICONF ERROR --------------------------- +Configuration failed because redland was not found. Try installing: + * deb: librdf0-dev (Debian, Ubuntu, etc) + * rpm: redland-devel (Fedora, EPEL) + * brew: redland (OSX) +If redland is already installed, check that 'pkg-config' is in your +PATH and PKG_CONFIG_PATH contains a redland.pc file. If pkg-config +is unavailable you can set INCLUDE_DIR and LIB_DIR manually via: +R CMD INSTALL --configure-vars='INCLUDE_DIR=... LIB_DIR=...' +-------------------------------------------------------------------- +ERROR: configuration failed for package ‘redland’ +* removing ‘/tmp/workdir/redland/old/redland.Rcheck/redland’ + + +``` +# RGraphSpace + +
+ +* Version: NA +* GitHub: NA +* Source code: https://github.com/cran/RGraphSpace +* Number of recursive dependencies: 64 + +Run `revdepcheck::cloud_details(, "RGraphSpace")` for more info + +
+ +## Error before installation + +### Devel + +``` + + + + + + +``` +### CRAN + +``` + + + + + + +``` +# riskRegression + +
+ +* Version: 2023.12.21 +* GitHub: https://github.com/tagteam/riskRegression +* Source code: https://github.com/cran/riskRegression +* Date/Publication: 2023-12-19 17:00:02 UTC +* Number of recursive dependencies: 185 + +Run `revdepcheck::cloud_details(, "riskRegression")` for more info + +
+ +## Error before installation + +### Devel + +``` +* using log directory ‘/tmp/workdir/riskRegression/new/riskRegression.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 + GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 +* running under: Ubuntu 24.04.1 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘riskRegression/DESCRIPTION’ ... OK +... +* this is package ‘riskRegression’ version ‘2023.12.21’ +* package encoding: UTF-8 +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Package required but not available: ‘rms’ + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + + + +``` +### CRAN + +``` +* using log directory ‘/tmp/workdir/riskRegression/old/riskRegression.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 + GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 +* running under: Ubuntu 24.04.1 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘riskRegression/DESCRIPTION’ ... OK +... +* this is package ‘riskRegression’ version ‘2023.12.21’ +* package encoding: UTF-8 +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Package required but not available: ‘rms’ + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + + + +``` +# rlme + +
+ +* Version: 0.5 +* GitHub: NA +* Source code: https://github.com/cran/rlme +* Date/Publication: 2018-01-09 17:35:55 UTC +* Number of recursive dependencies: 41 + +Run `revdepcheck::cloud_details(, "rlme")` for more info + +
+ +## In both + +* checking whether package ‘rlme’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/rlme/new/rlme.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘rlme’ ... +** package ‘rlme’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c bmat.cpp -o bmat.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c pairup.cpp -o pairup.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c remove_k_smallest.cpp -o remove_k_smallest.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c rhosch.cpp -o rhosch.o +... +** R +** data +*** moving datasets to lazyload DB +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘rlme’ +* removing ‘/tmp/workdir/rlme/new/rlme.Rcheck/rlme’ + + +``` +### CRAN + +``` +* installing *source* package ‘rlme’ ... +** package ‘rlme’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c bmat.cpp -o bmat.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c pairup.cpp -o pairup.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c remove_k_smallest.cpp -o remove_k_smallest.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c rhosch.cpp -o rhosch.o +... +** R +** data +*** moving datasets to lazyload DB +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘rlme’ +* removing ‘/tmp/workdir/rlme/old/rlme.Rcheck/rlme’ + + +``` +# robber + +
+ +* Version: 0.2.4 +* GitHub: https://github.com/Chabert-Liddell/robber +* Source code: https://github.com/cran/robber +* Date/Publication: 2024-02-07 13:50:02 UTC +* Number of recursive dependencies: 143 + +Run `revdepcheck::cloud_details(, "robber")` for more info + +
+ +## Error before installation + +### Devel + +``` +* using log directory ‘/tmp/workdir/robber/new/robber.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 + GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 +* running under: Ubuntu 24.04.1 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘robber/DESCRIPTION’ ... OK +... +* checking tests ... OK + Running ‘spelling.R’ + Running ‘testthat.R’ +* checking for unstated dependencies in vignettes ... OK +* checking package vignettes in ‘inst/doc’ ... OK +* checking running R code from vignettes ... OK + ‘topological-analysis.Rmd’ using ‘UTF-8’... OK +* checking re-building of vignette outputs ... OK +* DONE +Status: OK + + + + + +``` +### CRAN + +``` +* using log directory ‘/tmp/workdir/robber/old/robber.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 + GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 +* running under: Ubuntu 24.04.1 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘robber/DESCRIPTION’ ... OK +... +* checking tests ... OK + Running ‘spelling.R’ + Running ‘testthat.R’ +* checking for unstated dependencies in vignettes ... OK +* checking package vignettes in ‘inst/doc’ ... OK +* checking running R code from vignettes ... OK + ‘topological-analysis.Rmd’ using ‘UTF-8’... OK +* checking re-building of vignette outputs ... OK +* DONE +Status: OK + + + + + +``` +# robmed + +
+ +* Version: 1.1.0 +* GitHub: https://github.com/aalfons/robmed +* Source code: https://github.com/cran/robmed +* Date/Publication: 2024-11-03 05:30:07 UTC +* Number of recursive dependencies: 59 + +Run `revdepcheck::cloud_details(, "robmed")` for more info + +
+ +## In both + +* checking whether package ‘robmed’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/robmed/new/robmed.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘robmed’ ... +** package ‘robmed’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘robmed’ +* removing ‘/tmp/workdir/robmed/new/robmed.Rcheck/robmed’ + + +``` +### CRAN + +``` +* installing *source* package ‘robmed’ ... +** package ‘robmed’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘robmed’ +* removing ‘/tmp/workdir/robmed/old/robmed.Rcheck/robmed’ + + +``` +# RQdeltaCT + +
+ +* Version: 1.3.0 +* GitHub: NA +* Source code: https://github.com/cran/RQdeltaCT +* Date/Publication: 2024-04-17 15:50:02 UTC +* Number of recursive dependencies: 163 + +Run `revdepcheck::cloud_details(, "RQdeltaCT")` for more info + +
+ +## In both + +* checking whether package ‘RQdeltaCT’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/RQdeltaCT/new/RQdeltaCT.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘RQdeltaCT’ ... +** package ‘RQdeltaCT’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘RQdeltaCT’ +* removing ‘/tmp/workdir/RQdeltaCT/new/RQdeltaCT.Rcheck/RQdeltaCT’ + + +``` +### CRAN + +``` +* installing *source* package ‘RQdeltaCT’ ... +** package ‘RQdeltaCT’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘RQdeltaCT’ +* removing ‘/tmp/workdir/RQdeltaCT/old/RQdeltaCT.Rcheck/RQdeltaCT’ + + +``` +# RRPP + +
+ +* Version: NA +* GitHub: NA +* Source code: https://github.com/cran/RRPP +* Number of recursive dependencies: 67 + +Run `revdepcheck::cloud_details(, "RRPP")` for more info + +
+ +## Error before installation + +### Devel + +``` + + + + + + +``` +### CRAN + +``` + + + + + + +``` +# rstanarm + +
+ +* Version: 2.32.1 +* GitHub: https://github.com/stan-dev/rstanarm +* Source code: https://github.com/cran/rstanarm +* Date/Publication: 2024-01-18 23:00:03 UTC +* Number of recursive dependencies: 137 + +Run `revdepcheck::cloud_details(, "rstanarm")` for more info + +
+ +## In both + +* checking whether package ‘rstanarm’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/rstanarm/new/rstanarm.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘rstanarm’ ... +** package ‘rstanarm’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ +using C++17 +"/opt/R/4.3.1/lib/R/bin/Rscript" -e "source(file.path('..', 'tools', 'make_cc.R')); make_cc(commandArgs(TRUE))" stan_files/bernoulli.stan +Wrote C++ file "stan_files/bernoulli.cc" + + +... +/usr/local/lib/R/site-library/StanHeaders/include/stan/math/rev/fun/quad_form.hpp:88:0: required from here +/usr/local/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] + 654 | return internal::first_aligned::alignment),Derived>(m); + | ^~~~~~~~~ +g++: fatal error: Killed signal terminated program cc1plus +compilation terminated. +make: *** [/opt/R/4.3.1/lib/R/etc/Makeconf:198: stan_files/continuous.o] Error 1 +rm stan_files/bernoulli.cc stan_files/binomial.cc stan_files/continuous.cc +ERROR: compilation failed for package ‘rstanarm’ +* removing ‘/tmp/workdir/rstanarm/new/rstanarm.Rcheck/rstanarm’ + + +``` +### CRAN + +``` +* installing *source* package ‘rstanarm’ ... +** package ‘rstanarm’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ +using C++17 +"/opt/R/4.3.1/lib/R/bin/Rscript" -e "source(file.path('..', 'tools', 'make_cc.R')); make_cc(commandArgs(TRUE))" stan_files/bernoulli.stan +Wrote C++ file "stan_files/bernoulli.cc" + + +... +/usr/local/lib/R/site-library/StanHeaders/include/stan/math/rev/fun/quad_form.hpp:88:0: required from here +/usr/local/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] + 654 | return internal::first_aligned::alignment),Derived>(m); + | ^~~~~~~~~ +g++: fatal error: Killed signal terminated program cc1plus +compilation terminated. +make: *** [/opt/R/4.3.1/lib/R/etc/Makeconf:198: stan_files/continuous.o] Error 1 +rm stan_files/bernoulli.cc stan_files/binomial.cc stan_files/continuous.cc +ERROR: compilation failed for package ‘rstanarm’ +* removing ‘/tmp/workdir/rstanarm/old/rstanarm.Rcheck/rstanarm’ + + +``` +# scAnnotate + +
+ +* Version: 0.3 +* GitHub: NA +* Source code: https://github.com/cran/scAnnotate +* Date/Publication: 2024-03-14 00:00:02 UTC +* Number of recursive dependencies: 163 + +Run `revdepcheck::cloud_details(, "scAnnotate")` for more info + +
+ +## In both + +* checking whether package ‘scAnnotate’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/scAnnotate/new/scAnnotate.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘scAnnotate’ ... +** package ‘scAnnotate’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.4 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘scAnnotate’ +* removing ‘/tmp/workdir/scAnnotate/new/scAnnotate.Rcheck/scAnnotate’ + + +``` +### CRAN + +``` +* installing *source* package ‘scAnnotate’ ... +** package ‘scAnnotate’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.4 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘scAnnotate’ +* removing ‘/tmp/workdir/scAnnotate/old/scAnnotate.Rcheck/scAnnotate’ + + +``` +# SCIntRuler + +
+ +* Version: 0.99.6 +* GitHub: https://github.com/yuelyu21/SCIntRuler +* Source code: https://github.com/cran/SCIntRuler +* Date/Publication: 2024-07-12 15:20:08 UTC +* Number of recursive dependencies: 202 + +Run `revdepcheck::cloud_details(, "SCIntRuler")` for more info + +
+ +## In both + +* checking whether package ‘SCIntRuler’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/SCIntRuler/new/SCIntRuler.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘SCIntRuler’ ... +** package ‘SCIntRuler’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c crossdist.cpp -o crossdist.o +g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o SCIntRuler.so RcppExports.o crossdist.o -L/opt/R/4.3.1/lib/R/lib -lR +installing to /tmp/workdir/SCIntRuler/new/SCIntRuler.Rcheck/00LOCK-SCIntRuler/00new/SCIntRuler/libs +** R +... +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is being loaded, but >= 1.6.4 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘SCIntRuler’ +* removing ‘/tmp/workdir/SCIntRuler/new/SCIntRuler.Rcheck/SCIntRuler’ + + +``` +### CRAN + +``` +* installing *source* package ‘SCIntRuler’ ... +** package ‘SCIntRuler’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c crossdist.cpp -o crossdist.o +g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o SCIntRuler.so RcppExports.o crossdist.o -L/opt/R/4.3.1/lib/R/lib -lR +installing to /tmp/workdir/SCIntRuler/old/SCIntRuler.Rcheck/00LOCK-SCIntRuler/00new/SCIntRuler/libs +** R +... +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is being loaded, but >= 1.6.4 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘SCIntRuler’ +* removing ‘/tmp/workdir/SCIntRuler/old/SCIntRuler.Rcheck/SCIntRuler’ + + +``` +# scMappR + +
+ +* Version: 1.0.11 +* GitHub: NA +* Source code: https://github.com/cran/scMappR +* Date/Publication: 2023-06-30 08:40:08 UTC +* Number of recursive dependencies: 241 + +Run `revdepcheck::cloud_details(, "scMappR")` for more info + +
+ +## In both + +* checking whether package ‘scMappR’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/scMappR/new/scMappR.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘scMappR’ ... +** package ‘scMappR’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.4 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘scMappR’ +* removing ‘/tmp/workdir/scMappR/new/scMappR.Rcheck/scMappR’ + + +``` +### CRAN + +``` +* installing *source* package ‘scMappR’ ... +** package ‘scMappR’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.4 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘scMappR’ +* removing ‘/tmp/workdir/scMappR/old/scMappR.Rcheck/scMappR’ + + +``` +# scperturbR + +
+ +* Version: 0.1.0 +* GitHub: https://github.com/sanderlab/scPerturb +* Source code: https://github.com/cran/scperturbR +* Date/Publication: 2023-03-01 20:10:02 UTC +* Number of recursive dependencies: 161 + +Run `revdepcheck::cloud_details(, "scperturbR")` for more info + +
+ +## In both + +* checking whether package ‘scperturbR’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/scperturbR/new/scperturbR.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘scperturbR’ ... +** package ‘scperturbR’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.4 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘scperturbR’ +* removing ‘/tmp/workdir/scperturbR/new/scperturbR.Rcheck/scperturbR’ + + +``` +### CRAN + +``` +* installing *source* package ‘scperturbR’ ... +** package ‘scperturbR’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.4 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘scperturbR’ +* removing ‘/tmp/workdir/scperturbR/old/scperturbR.Rcheck/scperturbR’ + + +``` +# scpi + +
+ +* Version: 2.2.5 +* GitHub: NA +* Source code: https://github.com/cran/scpi +* Date/Publication: 2023-11-01 06:10:07 UTC +* Number of recursive dependencies: 97 + +Run `revdepcheck::cloud_details(, "scpi")` for more info + +
+ +## In both + +* checking whether package ‘scpi’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/scpi/new/scpi.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘scpi’ ... +** package ‘scpi’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘scpi’ +* removing ‘/tmp/workdir/scpi/new/scpi.Rcheck/scpi’ + + +``` +### CRAN + +``` +* installing *source* package ‘scpi’ ... +** package ‘scpi’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘scpi’ +* removing ‘/tmp/workdir/scpi/old/scpi.Rcheck/scpi’ + + +``` +# SCRIP + +
+ +* Version: 1.0.0 +* GitHub: https://github.com/thecailab/SCRIP +* Source code: https://github.com/cran/SCRIP +* Date/Publication: 2021-11-19 07:50:02 UTC +* Number of recursive dependencies: 190 + +Run `revdepcheck::cloud_details(, "SCRIP")` for more info + +
+ +## In both + +* checking whether package ‘SCRIP’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/SCRIP/new/SCRIP.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘SCRIP’ ... +** package ‘SCRIP’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.4 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘SCRIP’ +* removing ‘/tmp/workdir/SCRIP/new/SCRIP.Rcheck/SCRIP’ + + +``` +### CRAN + +``` +* installing *source* package ‘SCRIP’ ... +** package ‘SCRIP’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.4 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘SCRIP’ +* removing ‘/tmp/workdir/SCRIP/old/SCRIP.Rcheck/SCRIP’ + + +``` +# SensIAT + +
+ +* Version: NA +* GitHub: NA +* Source code: https://github.com/cran/SensIAT +* Number of recursive dependencies: 60 + +Run `revdepcheck::cloud_details(, "SensIAT")` for more info + +
+ +## Error before installation + +### Devel + +``` + + + + + + +``` +### CRAN + +``` + + + + + + +``` +# SensMap + +
+ +* Version: 0.7 +* GitHub: https://github.com/IbtihelRebhi/SensMap +* Source code: https://github.com/cran/SensMap +* Date/Publication: 2022-07-04 19:00:02 UTC +* Number of recursive dependencies: 145 + +Run `revdepcheck::cloud_details(, "SensMap")` for more info + +
+ +## In both + +* checking whether package ‘SensMap’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/SensMap/new/SensMap.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘SensMap’ ... +** package ‘SensMap’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘SensMap’ +* removing ‘/tmp/workdir/SensMap/new/SensMap.Rcheck/SensMap’ + + +``` +### CRAN + +``` +* installing *source* package ‘SensMap’ ... +** package ‘SensMap’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘SensMap’ +* removing ‘/tmp/workdir/SensMap/old/SensMap.Rcheck/SensMap’ + + +``` +# Seurat + +
+ +* Version: 5.1.0 +* GitHub: https://github.com/satijalab/seurat +* Source code: https://github.com/cran/Seurat +* Date/Publication: 2024-05-10 17:23:17 UTC +* Number of recursive dependencies: 265 + +Run `revdepcheck::cloud_details(, "Seurat")` for more info + +
+ +## In both + +* checking whether package ‘Seurat’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/Seurat/new/Seurat.Rcheck/00install.out’ for details. + ``` + +* checking package dependencies ... NOTE + ``` + Package suggested but not available for checking: ‘enrichR’ + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘Seurat’ ... +** package ‘Seurat’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C compiler: ‘gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ +using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ +using C++17 +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppEigen/include' -I'/usr/local/lib/R/site-library/RcppProgress/include' -I/usr/local/include -fpic -g -O2 -c ModularityOptimizer.cpp -o ModularityOptimizer.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppEigen/include' -I'/usr/local/lib/R/site-library/RcppProgress/include' -I/usr/local/include -fpic -g -O2 -c RModularityOptimizer.cpp -o RModularityOptimizer.o +In file included from /usr/local/lib/R/site-library/RcppEigen/include/Eigen/Core:205, +... +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error: package or namespace load failed for ‘SeuratObject’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): + namespace ‘Matrix’ 1.5-4.1 is being loaded, but >= 1.6.4 is required +Execution halted +ERROR: lazy loading failed for package ‘Seurat’ +* removing ‘/tmp/workdir/Seurat/new/Seurat.Rcheck/Seurat’ + + +``` +### CRAN + +``` +* installing *source* package ‘Seurat’ ... +** package ‘Seurat’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C compiler: ‘gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ +using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ +using C++17 +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppEigen/include' -I'/usr/local/lib/R/site-library/RcppProgress/include' -I/usr/local/include -fpic -g -O2 -c ModularityOptimizer.cpp -o ModularityOptimizer.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppEigen/include' -I'/usr/local/lib/R/site-library/RcppProgress/include' -I/usr/local/include -fpic -g -O2 -c RModularityOptimizer.cpp -o RModularityOptimizer.o +In file included from /usr/local/lib/R/site-library/RcppEigen/include/Eigen/Core:205, +... +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error: package or namespace load failed for ‘SeuratObject’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): + namespace ‘Matrix’ 1.5-4.1 is being loaded, but >= 1.6.4 is required +Execution halted +ERROR: lazy loading failed for package ‘Seurat’ +* removing ‘/tmp/workdir/Seurat/old/Seurat.Rcheck/Seurat’ + + +``` +# shinyTempSignal + +
+ +* Version: 0.0.8 +* GitHub: https://github.com/YuLab-SMU/shinyTempSignal +* Source code: https://github.com/cran/shinyTempSignal +* Date/Publication: 2024-03-06 08:00:02 UTC +* Number of recursive dependencies: 134 + +Run `revdepcheck::cloud_details(, "shinyTempSignal")` for more info + +
+ +## In both + +* checking whether package ‘shinyTempSignal’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/shinyTempSignal/new/shinyTempSignal.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘shinyTempSignal’ ... +** package ‘shinyTempSignal’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘shinyTempSignal’ +* removing ‘/tmp/workdir/shinyTempSignal/new/shinyTempSignal.Rcheck/shinyTempSignal’ + + +``` +### CRAN + +``` +* installing *source* package ‘shinyTempSignal’ ... +** package ‘shinyTempSignal’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘shinyTempSignal’ +* removing ‘/tmp/workdir/shinyTempSignal/old/shinyTempSignal.Rcheck/shinyTempSignal’ + + +``` +# Signac + +
+ +* Version: 1.14.0 +* GitHub: https://github.com/stuart-lab/signac +* Source code: https://github.com/cran/Signac +* Date/Publication: 2024-08-21 07:40:02 UTC +* Number of recursive dependencies: 246 + +Run `revdepcheck::cloud_details(, "Signac")` for more info + +
+ +## In both + +* checking whether package ‘Signac’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/Signac/new/Signac.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘Signac’ ... +** package ‘Signac’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c filter.cpp -o filter.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c group.cpp -o group.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c split.cpp -o split.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c validate.cpp -o validate.o +... +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.4 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘Signac’ +* removing ‘/tmp/workdir/Signac/new/Signac.Rcheck/Signac’ + + +``` +### CRAN + +``` +* installing *source* package ‘Signac’ ... +** package ‘Signac’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c filter.cpp -o filter.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c group.cpp -o group.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c split.cpp -o split.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c validate.cpp -o validate.o +... +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.4 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘Signac’ +* removing ‘/tmp/workdir/Signac/old/Signac.Rcheck/Signac’ + + +``` +# SimplyAgree + +
+ +* Version: 0.2.0 +* GitHub: https://github.com/arcaldwell49/SimplyAgree +* Source code: https://github.com/cran/SimplyAgree +* Date/Publication: 2024-03-21 14:20:06 UTC +* Number of recursive dependencies: 114 + +Run `revdepcheck::cloud_details(, "SimplyAgree")` for more info + +
+ +## In both + +* checking whether package ‘SimplyAgree’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/SimplyAgree/new/SimplyAgree.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘SimplyAgree’ ... +** package ‘SimplyAgree’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Warning in check_dep_version() : + ABI version mismatch: +lme4 was built with Matrix ABI version 1 +Current Matrix ABI version is 0 +Please re-install lme4 from source or restore original ‘Matrix’ package +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘SimplyAgree’ +* removing ‘/tmp/workdir/SimplyAgree/new/SimplyAgree.Rcheck/SimplyAgree’ + + +``` +### CRAN + +``` +* installing *source* package ‘SimplyAgree’ ... +** package ‘SimplyAgree’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Warning in check_dep_version() : + ABI version mismatch: +lme4 was built with Matrix ABI version 1 +Current Matrix ABI version is 0 +Please re-install lme4 from source or restore original ‘Matrix’ package +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘SimplyAgree’ +* removing ‘/tmp/workdir/SimplyAgree/old/SimplyAgree.Rcheck/SimplyAgree’ + + +``` +# smoothAPC + +
+ +* Version: 0.3 +* GitHub: NA +* Source code: https://github.com/cran/smoothAPC +* Date/Publication: 2018-05-18 09:43:08 UTC +* Number of recursive dependencies: 182 + +Run `revdepcheck::cloud_details(, "smoothAPC")` for more info + +
+ +## In both + +* checking whether package ‘smoothAPC’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/smoothAPC/new/smoothAPC.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘smoothAPC’ ... +** package ‘smoothAPC’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘smoothAPC’ +* removing ‘/tmp/workdir/smoothAPC/new/smoothAPC.Rcheck/smoothAPC’ + + +``` +### CRAN + +``` +* installing *source* package ‘smoothAPC’ ... +** package ‘smoothAPC’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘smoothAPC’ +* removing ‘/tmp/workdir/smoothAPC/old/smoothAPC.Rcheck/smoothAPC’ + + +``` +# SNPassoc + +
+ +* Version: 2.1-2 +* GitHub: https://github.com/isglobal-brge/SNPassoc +* Source code: https://github.com/cran/SNPassoc +* Date/Publication: 2024-10-28 17:30:02 UTC +* Number of recursive dependencies: 164 + +Run `revdepcheck::cloud_details(, "SNPassoc")` for more info + +
+ +## Error before installation + +### Devel + +``` +* using log directory ‘/tmp/workdir/SNPassoc/new/SNPassoc.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 + GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 +* running under: Ubuntu 24.04.1 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘SNPassoc/DESCRIPTION’ ... OK +... +* this is package ‘SNPassoc’ version ‘2.1-2’ +* package encoding: UTF-8 +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Package required but not available: ‘haplo.stats’ + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + + + +``` +### CRAN + +``` +* using log directory ‘/tmp/workdir/SNPassoc/old/SNPassoc.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 + GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 +* running under: Ubuntu 24.04.1 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘SNPassoc/DESCRIPTION’ ... OK +... +* this is package ‘SNPassoc’ version ‘2.1-2’ +* package encoding: UTF-8 +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Package required but not available: ‘haplo.stats’ + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + + + +``` +# snplinkage + +
+ +* Version: 1.2.0 +* GitHub: NA +* Source code: https://github.com/cran/snplinkage +* Date/Publication: 2024-09-09 19:10:02 UTC +* Number of recursive dependencies: 152 + +Run `revdepcheck::cloud_details(, "snplinkage")` for more info + +
+ +## Error before installation + +### Devel + +``` +* using log directory ‘/tmp/workdir/snplinkage/new/snplinkage.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 + GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 +* running under: Ubuntu 24.04.1 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘snplinkage/DESCRIPTION’ ... OK +... +* this is package ‘snplinkage’ version ‘1.2.0’ +* package encoding: UTF-8 +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Package required but not available: ‘GWASTools’ + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + + + +``` +### CRAN + +``` +* using log directory ‘/tmp/workdir/snplinkage/old/snplinkage.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 + GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 +* running under: Ubuntu 24.04.1 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘snplinkage/DESCRIPTION’ ... OK +... +* this is package ‘snplinkage’ version ‘1.2.0’ +* package encoding: UTF-8 +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Package required but not available: ‘GWASTools’ + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + + + +``` +# statsr + +
+ +* Version: 0.3.0 +* GitHub: https://github.com/StatsWithR/statsr +* Source code: https://github.com/cran/statsr +* Date/Publication: 2021-01-22 20:40:03 UTC +* Number of recursive dependencies: 96 + +Run `revdepcheck::cloud_details(, "statsr")` for more info + +
+ +## In both + +* checking whether package ‘statsr’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/statsr/new/statsr.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘statsr’ ... +** package ‘statsr’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error: package or namespace load failed for ‘BayesFactor’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Execution halted +ERROR: lazy loading failed for package ‘statsr’ +* removing ‘/tmp/workdir/statsr/new/statsr.Rcheck/statsr’ + + +``` +### CRAN + +``` +* installing *source* package ‘statsr’ ... +** package ‘statsr’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error: package or namespace load failed for ‘BayesFactor’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Execution halted +ERROR: lazy loading failed for package ‘statsr’ +* removing ‘/tmp/workdir/statsr/old/statsr.Rcheck/statsr’ + + +``` +# stR + +
+ +* Version: 0.7 +* GitHub: https://github.com/robjhyndman/stR +* Source code: https://github.com/cran/stR +* Date/Publication: 2024-07-28 13:30:01 UTC +* Number of recursive dependencies: 190 + +Run `revdepcheck::cloud_details(, "stR")` for more info + +
+ +## In both + +* checking whether package ‘stR’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/stR/new/stR.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘stR’ ... +** package ‘stR’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘stR’ +* removing ‘/tmp/workdir/stR/new/stR.Rcheck/stR’ + + +``` +### CRAN + +``` +* installing *source* package ‘stR’ ... +** package ‘stR’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘stR’ +* removing ‘/tmp/workdir/stR/old/stR.Rcheck/stR’ + + +``` +# survcompare + +
+ +* Version: 0.2.0 +* GitHub: NA +* Source code: https://github.com/cran/survcompare +* Date/Publication: 2024-10-05 17:00:01 UTC +* Number of recursive dependencies: 155 + +Run `revdepcheck::cloud_details(, "survcompare")` for more info + +
+ +## Error before installation + +### Devel + +``` +* using log directory ‘/tmp/workdir/survcompare/new/survcompare.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 + GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 +* running under: Ubuntu 24.04.1 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘survcompare/DESCRIPTION’ ... OK +... +* checking installed files from ‘inst/doc’ ... OK +* checking files in ‘vignettes’ ... OK +* checking examples ... OK +* checking for unstated dependencies in vignettes ... OK +* checking package vignettes in ‘inst/doc’ ... OK +* checking running R code from vignettes ... OK + ‘survcompare_application.Rmd’ using ‘UTF-8’... OK +* checking re-building of vignette outputs ... OK +* DONE +Status: OK + + + + + +``` +### CRAN + +``` +* using log directory ‘/tmp/workdir/survcompare/old/survcompare.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 + GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 +* running under: Ubuntu 24.04.1 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘survcompare/DESCRIPTION’ ... OK +... +* checking installed files from ‘inst/doc’ ... OK +* checking files in ‘vignettes’ ... OK +* checking examples ... OK +* checking for unstated dependencies in vignettes ... OK +* checking package vignettes in ‘inst/doc’ ... OK +* checking running R code from vignettes ... OK + ‘survcompare_application.Rmd’ using ‘UTF-8’... OK +* checking re-building of vignette outputs ... OK +* DONE +Status: OK + + + + + +``` +# survex + +
+ +* Version: 1.2.0 +* GitHub: https://github.com/ModelOriented/survex +* Source code: https://github.com/cran/survex +* Date/Publication: 2023-10-24 18:50:07 UTC +* Number of recursive dependencies: 182 + +Run `revdepcheck::cloud_details(, "survex")` for more info + +
+ +## Error before installation + +### Devel + +``` +* using log directory ‘/tmp/workdir/survex/new/survex.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 + GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 +* running under: Ubuntu 24.04.1 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘survex/DESCRIPTION’ ... OK +... +  A new explainer has been created!  +> +> y <- cph_exp$y +> times <- cph_exp$times +> surv <- cph_exp$predict_survival_function(cph, cph_exp$data, times) +Error in loadNamespace(x) : there is no package called ‘riskRegression’ +Calls: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart +Execution halted +* DONE +Status: 1 ERROR, 1 NOTE + + + + + +``` +### CRAN + +``` +* using log directory ‘/tmp/workdir/survex/old/survex.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 + GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 +* running under: Ubuntu 24.04.1 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘survex/DESCRIPTION’ ... OK +... +  A new explainer has been created!  +> +> y <- cph_exp$y +> times <- cph_exp$times +> surv <- cph_exp$predict_survival_function(cph, cph_exp$data, times) +Error in loadNamespace(x) : there is no package called ‘riskRegression’ +Calls: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart +Execution halted +* DONE +Status: 1 ERROR, 1 NOTE + + + + + +``` +# survHE + +
+ +* Version: 2.0.2 +* GitHub: https://github.com/giabaio/survHE +* Source code: https://github.com/cran/survHE +* Date/Publication: 2024-10-04 09:50:02 UTC +* Number of recursive dependencies: 129 + +Run `revdepcheck::cloud_details(, "survHE")` for more info + +
+ +## Error before installation + +### Devel + +``` +* using log directory ‘/tmp/workdir/survHE/new/survHE.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 + GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 +* running under: Ubuntu 24.04.1 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘survHE/DESCRIPTION’ ... OK +... +* checking package dependencies ... ERROR +Package required but not available: ‘rms’ + +Packages suggested but not available for checking: + 'survHEinla', 'survHEhmc' + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + + + +``` +### CRAN + +``` +* using log directory ‘/tmp/workdir/survHE/old/survHE.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 + GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 +* running under: Ubuntu 24.04.1 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘survHE/DESCRIPTION’ ... OK +... +* checking package dependencies ... ERROR +Package required but not available: ‘rms’ + +Packages suggested but not available for checking: + 'survHEinla', 'survHEhmc' + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + + + +``` +# SurvMetrics + +
+ +* Version: 0.5.0 +* GitHub: https://github.com/skyee1/SurvMetrics +* Source code: https://github.com/cran/SurvMetrics +* Date/Publication: 2022-09-03 21:40:23 UTC +* Number of recursive dependencies: 189 + +Run `revdepcheck::cloud_details(, "SurvMetrics")` for more info + +
+ +## Error before installation + +### Devel + +``` +* using log directory ‘/tmp/workdir/SurvMetrics/new/SurvMetrics.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 + GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 +* running under: Ubuntu 24.04.1 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘SurvMetrics/DESCRIPTION’ ... OK +... +--- failed re-building ‘SurvMetrics-vignette.Rmd’ + +SUMMARY: processing the following file failed: + ‘SurvMetrics-vignette.Rmd’ + +Error: Vignette re-building failed. +Execution halted + +* DONE +Status: 1 ERROR, 1 WARNING, 1 NOTE + + + + + +``` +### CRAN + +``` +* using log directory ‘/tmp/workdir/SurvMetrics/old/SurvMetrics.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 + GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 +* running under: Ubuntu 24.04.1 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘SurvMetrics/DESCRIPTION’ ... OK +... +--- failed re-building ‘SurvMetrics-vignette.Rmd’ + +SUMMARY: processing the following file failed: + ‘SurvMetrics-vignette.Rmd’ + +Error: Vignette re-building failed. +Execution halted + +* DONE +Status: 1 ERROR, 1 WARNING, 1 NOTE + + + + + +``` +# TestAnaAPP + +
+ +* Version: 1.1.1 +* GitHub: https://github.com/jiangyouxiang/TestAnaAPP +* Source code: https://github.com/cran/TestAnaAPP +* Date/Publication: 2024-09-10 07:30:02 UTC +* Number of recursive dependencies: 249 + +Run `revdepcheck::cloud_details(, "TestAnaAPP")` for more info + +
+ +## In both + +* checking whether package ‘TestAnaAPP’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/TestAnaAPP/new/TestAnaAPP.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘TestAnaAPP’ ... +** package ‘TestAnaAPP’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** inst +** byte-compile and prepare package for lazy loading +Warning in check_dep_version() : + ABI version mismatch: +lme4 was built with Matrix ABI version 1 +Current Matrix ABI version is 0 +Please re-install lme4 from source or restore original ‘Matrix’ package +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + there is no package called ‘rms’ +Calls: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart +Execution halted +ERROR: lazy loading failed for package ‘TestAnaAPP’ +* removing ‘/tmp/workdir/TestAnaAPP/new/TestAnaAPP.Rcheck/TestAnaAPP’ + + +``` +### CRAN + +``` +* installing *source* package ‘TestAnaAPP’ ... +** package ‘TestAnaAPP’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** inst +** byte-compile and prepare package for lazy loading +Warning in check_dep_version() : + ABI version mismatch: +lme4 was built with Matrix ABI version 1 +Current Matrix ABI version is 0 +Please re-install lme4 from source or restore original ‘Matrix’ package +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + there is no package called ‘rms’ +Calls: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart +Execution halted +ERROR: lazy loading failed for package ‘TestAnaAPP’ +* removing ‘/tmp/workdir/TestAnaAPP/old/TestAnaAPP.Rcheck/TestAnaAPP’ + + +``` +# tidyEdSurvey + +
+ +* Version: 0.1.3 +* GitHub: NA +* Source code: https://github.com/cran/tidyEdSurvey +* Date/Publication: 2024-05-14 20:20:03 UTC +* Number of recursive dependencies: 110 + +Run `revdepcheck::cloud_details(, "tidyEdSurvey")` for more info + +
+ +## In both + +* checking whether package ‘tidyEdSurvey’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/tidyEdSurvey/new/tidyEdSurvey.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘tidyEdSurvey’ ... +** package ‘tidyEdSurvey’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** byte-compile and prepare package for lazy loading +Error: package or namespace load failed for ‘EdSurvey’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +In addition: Warning message: +In check_dep_version() : ABI version mismatch: +lme4 was built with Matrix ABI version 1 +Current Matrix ABI version is 0 +Please re-install lme4 from source or restore original ‘Matrix’ package +Execution halted +ERROR: lazy loading failed for package ‘tidyEdSurvey’ +* removing ‘/tmp/workdir/tidyEdSurvey/new/tidyEdSurvey.Rcheck/tidyEdSurvey’ + + +``` +### CRAN + +``` +* installing *source* package ‘tidyEdSurvey’ ... +** package ‘tidyEdSurvey’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** byte-compile and prepare package for lazy loading +Error: package or namespace load failed for ‘EdSurvey’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +In addition: Warning message: +In check_dep_version() : ABI version mismatch: +lme4 was built with Matrix ABI version 1 +Current Matrix ABI version is 0 +Please re-install lme4 from source or restore original ‘Matrix’ package +Execution halted +ERROR: lazy loading failed for package ‘tidyEdSurvey’ +* removing ‘/tmp/workdir/tidyEdSurvey/old/tidyEdSurvey.Rcheck/tidyEdSurvey’ + + +``` +# tidyseurat + +
+ +* Version: 0.8.0 +* GitHub: https://github.com/stemangiola/tidyseurat +* Source code: https://github.com/cran/tidyseurat +* Date/Publication: 2024-01-10 04:50:02 UTC +* Number of recursive dependencies: 196 + +Run `revdepcheck::cloud_details(, "tidyseurat")` for more info + +
+ +## In both + +* checking whether package ‘tidyseurat’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/tidyseurat/new/tidyseurat.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘tidyseurat’ ... +** package ‘tidyseurat’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error: package or namespace load failed for ‘SeuratObject’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.4 is required +Execution halted +ERROR: lazy loading failed for package ‘tidyseurat’ +* removing ‘/tmp/workdir/tidyseurat/new/tidyseurat.Rcheck/tidyseurat’ + + +``` +### CRAN + +``` +* installing *source* package ‘tidyseurat’ ... +** package ‘tidyseurat’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error: package or namespace load failed for ‘SeuratObject’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.4 is required +Execution halted +ERROR: lazy loading failed for package ‘tidyseurat’ +* removing ‘/tmp/workdir/tidyseurat/old/tidyseurat.Rcheck/tidyseurat’ + + +``` +# tidyvpc + +
+ +* Version: 1.5.1 +* GitHub: https://github.com/certara/tidyvpc +* Source code: https://github.com/cran/tidyvpc +* Date/Publication: 2024-01-18 13:10:02 UTC +* Number of recursive dependencies: 173 + +Run `revdepcheck::cloud_details(, "tidyvpc")` for more info + +
+ +## In both + +* checking whether package ‘tidyvpc’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/tidyvpc/new/tidyvpc.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘tidyvpc’ ... +** package ‘tidyvpc’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘tidyvpc’ +* removing ‘/tmp/workdir/tidyvpc/new/tidyvpc.Rcheck/tidyvpc’ + + +``` +### CRAN + +``` +* installing *source* package ‘tidyvpc’ ... +** package ‘tidyvpc’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘tidyvpc’ +* removing ‘/tmp/workdir/tidyvpc/old/tidyvpc.Rcheck/tidyvpc’ + + +``` +# tramicp + +
+ +* Version: 0.0-2 +* GitHub: NA +* Source code: https://github.com/cran/tramicp +* Date/Publication: 2024-03-14 15:30:02 UTC +* Number of recursive dependencies: 58 + +Run `revdepcheck::cloud_details(, "tramicp")` for more info + +
+ +## Error before installation + +### Devel + +``` +* using log directory ‘/tmp/workdir/tramicp/new/tramicp.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 + GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 +* running under: Ubuntu 24.04.1 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘tramicp/DESCRIPTION’ ... OK +... +* this is package ‘tramicp’ version ‘0.0-2’ +* package encoding: UTF-8 +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Packages required but not available: 'tram', 'mlt', 'cotram' + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + + + +``` +### CRAN + +``` +* using log directory ‘/tmp/workdir/tramicp/old/tramicp.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 + GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 +* running under: Ubuntu 24.04.1 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘tramicp/DESCRIPTION’ ... OK +... +* this is package ‘tramicp’ version ‘0.0-2’ +* package encoding: UTF-8 +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Packages required but not available: 'tram', 'mlt', 'cotram' + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + + + +``` +# tramvs + +
+ +* Version: 0.0-6 +* GitHub: NA +* Source code: https://github.com/cran/tramvs +* Date/Publication: 2024-09-04 13:50:02 UTC +* Number of recursive dependencies: 105 + +Run `revdepcheck::cloud_details(, "tramvs")` for more info + +
+ +## Error before installation + +### Devel + +``` +* using log directory ‘/tmp/workdir/tramvs/new/tramvs.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 + GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 +* running under: Ubuntu 24.04.1 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘tramvs/DESCRIPTION’ ... OK +... +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Packages required but not available: 'tram', 'cotram' + +Package suggested but not available for checking: ‘mlt’ + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + + + +``` +### CRAN + +``` +* using log directory ‘/tmp/workdir/tramvs/old/tramvs.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 + GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 +* running under: Ubuntu 24.04.1 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘tramvs/DESCRIPTION’ ... OK +... +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Packages required but not available: 'tram', 'cotram' + +Package suggested but not available for checking: ‘mlt’ + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + + + +``` +# TriDimRegression + +
+ +* Version: 1.0.2 +* GitHub: https://github.com/alexander-pastukhov/tridim-regression +* Source code: https://github.com/cran/TriDimRegression +* Date/Publication: 2023-09-13 14:10:03 UTC +* Number of recursive dependencies: 98 + +Run `revdepcheck::cloud_details(, "TriDimRegression")` for more info + +
+ +## In both + +* checking whether package ‘TriDimRegression’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/TriDimRegression/new/TriDimRegression.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘TriDimRegression’ ... +** package ‘TriDimRegression’ successfully unpacked and MD5 sums checked +** using staged installation +Error in loadNamespace(x) : there is no package called ‘rstantools’ +Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart +Execution halted +ERROR: configuration failed for package ‘TriDimRegression’ +* removing ‘/tmp/workdir/TriDimRegression/new/TriDimRegression.Rcheck/TriDimRegression’ + + +``` +### CRAN + +``` +* installing *source* package ‘TriDimRegression’ ... +** package ‘TriDimRegression’ successfully unpacked and MD5 sums checked +** using staged installation +Error in loadNamespace(x) : there is no package called ‘rstantools’ +Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart +Execution halted +ERROR: configuration failed for package ‘TriDimRegression’ +* removing ‘/tmp/workdir/TriDimRegression/old/TriDimRegression.Rcheck/TriDimRegression’ + + +``` +# TSrepr + +
+ +* Version: 1.1.0 +* GitHub: https://github.com/PetoLau/TSrepr +* Source code: https://github.com/cran/TSrepr +* Date/Publication: 2020-07-13 06:50:15 UTC +* Number of recursive dependencies: 71 + +Run `revdepcheck::cloud_details(, "TSrepr")` for more info + +
+ +## In both + +* checking whether package ‘TSrepr’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/TSrepr/new/TSrepr.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘TSrepr’ ... +** package ‘TSrepr’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c FeatureClippingTrending.cpp -o FeatureClippingTrending.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c helpers.cpp -o helpers.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c measures.cpp -o measures.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c normalizations.cpp -o normalizations.o +... +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘TSrepr’ +* removing ‘/tmp/workdir/TSrepr/new/TSrepr.Rcheck/TSrepr’ + + +``` +### CRAN + +``` +* installing *source* package ‘TSrepr’ ... +** package ‘TSrepr’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c FeatureClippingTrending.cpp -o FeatureClippingTrending.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c helpers.cpp -o helpers.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c measures.cpp -o measures.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c normalizations.cpp -o normalizations.o +... +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘TSrepr’ +* removing ‘/tmp/workdir/TSrepr/old/TSrepr.Rcheck/TSrepr’ + + +``` +# visa + +
+ +* Version: 0.1.0 +* GitHub: https://github.com/kang-yu/visa +* Source code: https://github.com/cran/visa +* Date/Publication: 2021-04-20 07:20:02 UTC +* Number of recursive dependencies: 139 + +Run `revdepcheck::cloud_details(, "visa")` for more info + +
+ +## In both + +* checking whether package ‘visa’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/visa/new/visa.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘visa’ ... +** package ‘visa’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘visa’ +* removing ‘/tmp/workdir/visa/new/visa.Rcheck/visa’ + + +``` +### CRAN + +``` +* installing *source* package ‘visa’ ... +** package ‘visa’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘visa’ +* removing ‘/tmp/workdir/visa/old/visa.Rcheck/visa’ + + +``` +# wally + +
+ +* Version: 1.0.10 +* GitHub: NA +* Source code: https://github.com/cran/wally +* Date/Publication: 2019-10-30 14:40:02 UTC +* Number of recursive dependencies: 116 + +Run `revdepcheck::cloud_details(, "wally")` for more info + +
+ +## Error before installation + +### Devel + +``` +* using log directory ‘/tmp/workdir/wally/new/wally.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 + GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 +* running under: Ubuntu 24.04.1 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘wally/DESCRIPTION’ ... OK +... +* checking extension type ... Package +* this is package ‘wally’ version ‘1.0.10’ +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Package required but not available: ‘riskRegression’ + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + + + +``` +### CRAN + +``` +* using log directory ‘/tmp/workdir/wally/old/wally.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 + GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 +* running under: Ubuntu 24.04.1 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘wally/DESCRIPTION’ ... OK +... +* checking extension type ... Package +* this is package ‘wally’ version ‘1.0.10’ +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Package required but not available: ‘riskRegression’ + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + + + +``` +# zen4R + +
+ +* Version: 0.10 +* GitHub: https://github.com/eblondel/zen4R +* Source code: https://github.com/cran/zen4R +* Date/Publication: 2024-06-05 16:50:02 UTC +* Number of recursive dependencies: 74 + +Run `revdepcheck::cloud_details(, "zen4R")` for more info + +
+ +## In both + +* checking whether package ‘zen4R’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/zen4R/new/zen4R.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘zen4R’ ... +** package ‘zen4R’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** inst +** byte-compile and prepare package for lazy loading +Error in dyn.load(file, DLLpath = DLLpath, ...) : + unable to load shared object '/usr/local/lib/R/site-library/redland/libs/redland.so': + librdf.so.0: cannot open shared object file: No such file or directory +Calls: ... asNamespace -> loadNamespace -> library.dynam -> dyn.load +Execution halted +ERROR: lazy loading failed for package ‘zen4R’ +* removing ‘/tmp/workdir/zen4R/new/zen4R.Rcheck/zen4R’ + + +``` +### CRAN + +``` +* installing *source* package ‘zen4R’ ... +** package ‘zen4R’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** inst +** byte-compile and prepare package for lazy loading +Error in dyn.load(file, DLLpath = DLLpath, ...) : + unable to load shared object '/usr/local/lib/R/site-library/redland/libs/redland.so': + librdf.so.0: cannot open shared object file: No such file or directory +Calls: ... asNamespace -> loadNamespace -> library.dynam -> dyn.load +Execution halted +ERROR: lazy loading failed for package ‘zen4R’ +* removing ‘/tmp/workdir/zen4R/old/zen4R.Rcheck/zen4R’ + + +``` diff --git a/revdep/problems.md b/revdep/problems.md index b195c8ce3..e74e46acd 100644 --- a/revdep/problems.md +++ b/revdep/problems.md @@ -1,68 +1,1885 @@ -# miWQS +# admtools
-* Version: 0.4.4 -* GitHub: https://github.com/phargarten2/miWQS -* Source code: https://github.com/cran/miWQS -* Date/Publication: 2021-04-02 21:50:02 UTC -* Number of recursive dependencies: 152 +* Version: 0.4.0 +* GitHub: https://github.com/MindTheGap-ERC/admtools +* Source code: https://github.com/cran/admtools +* Date/Publication: 2024-10-03 23:01:00 UTC +* Number of recursive dependencies: 49 + +Run `revdepcheck::cloud_details(, "admtools")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘spelling.R’ + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview + ... + i Actually got a with text: + Success has been forced + ── Failure ('test_is_sac.R:3:3'): returns true for correct input ─────────────── + Expected `sac` to run without any conditions. + i Actually got a with text: + Success has been forced + + [ FAIL 4 | WARN 0 | SKIP 0 | PASS 209 ] + Error: Test failures + Execution halted + ``` + +# adproclus + +
+ +* Version: 2.0.0 +* GitHub: https://github.com/henry-heppe/adproclus +* Source code: https://github.com/cran/adproclus +* Date/Publication: 2024-08-17 18:00:01 UTC +* Number of recursive dependencies: 135 + +Run `revdepcheck::cloud_details(, "adproclus")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview + > # * https://testthat.r-lib.org/articles/special-files.html + ... + i Actually got a with text: + Success has been forced + ── Failure ('test-visualize.R:52:9'): Scree plots low dimensional ────────────── + Expected `plot_scree_adpc(model_selection, grid = TRUE)` to run without any conditions. + i Actually got a with text: + Success has been forced + + [ FAIL 28 | WARN 0 | SKIP 0 | PASS 47 ] + Error: Test failures + Execution halted + ``` + +# arrow + +
+ +* Version: 17.0.0.1 +* GitHub: https://github.com/apache/arrow +* Source code: https://github.com/cran/arrow +* Date/Publication: 2024-08-21 12:20:06 UTC +* Number of recursive dependencies: 77 + +Run `revdepcheck::cloud_details(, "arrow")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # Licensed to the Apache Software Foundation (ASF) under one + > # or more contributor license agreements. See the NOTICE file + > # distributed with this work for additional information + > # regarding copyright ownership. The ASF licenses this file + > # to you under the Apache License, Version 2.0 (the + > # "License"); you may not use this file except in compliance + > # with the License. You may obtain a copy of the License at + ... + `expected` is a logical vector (TRUE) + ── Failure ('test-parquet.R:458:3'): deprecated int96 timestamp unit can be specified when reading Parquet files ── + result$some_datetime == table$some_datetime is not TRUE + + `actual` is an R6 object of class + `expected` is a logical vector (TRUE) + + [ FAIL 5 | WARN 0 | SKIP 84 | PASS 6663 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 124.1Mb + sub-directories of 1Mb or more: + R 7.5Mb + libs 115.9Mb + ``` + +* checking Rd cross-references ... NOTE + ``` + Package unavailable to check Rd xrefs: ‘readr’ + ``` + +# bmgarch + +
+ +* Version: 2.0.0 +* GitHub: https://github.com/ph-rast/bmgarch +* Source code: https://github.com/cran/bmgarch +* Date/Publication: 2023-09-12 00:40:02 UTC +* Number of recursive dependencies: 81 + +Run `revdepcheck::cloud_details(, "bmgarch")` for more info + +
+ +## Newly broken + +* checking whether package ‘bmgarch’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/bmgarch/new/bmgarch.Rcheck/00install.out’ for details. + ``` + +## Newly fixed + +* checking installed package size ... NOTE + ``` + installed size is 304.9Mb + sub-directories of 1Mb or more: + libs 304.1Mb + ``` + +* checking for GNU extensions in Makefiles ... NOTE + ``` + GNU make is a SystemRequirements. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘bmgarch’ ... +** package ‘bmgarch’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ +using C++17 + + +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I"../inst/include" -I"/usr/local/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/usr/local/lib/R/site-library/BH/include' -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppParallel/include' -I'/usr/local/lib/R/site-library/RcppEigen/include' -I'/usr/local/lib/R/site-library/rstan/include' -I'/usr/local/lib/R/site-library/StanHeaders/include' -I/usr/local/include -I'/usr/local/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +In file included from /usr/local/lib/R/site-library/RcppEigen/include/Eigen/Core:205, +... +/usr/local/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:0: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_DCCMGARCH_namespace::model_DCCMGARCH; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’ +/usr/local/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:0: required from here +/usr/local/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] + 654 | return internal::first_aligned::alignment),Derived>(m); + | ^~~~~~~~~ +g++: fatal error: Killed signal terminated program cc1plus +compilation terminated. +make: *** [/opt/R/4.3.1/lib/R/etc/Makeconf:198: stanExports_DCCMGARCH.o] Error 1 +ERROR: compilation failed for package ‘bmgarch’ +* removing ‘/tmp/workdir/bmgarch/new/bmgarch.Rcheck/bmgarch’ + + +``` +### CRAN + +``` +* installing *source* package ‘bmgarch’ ... +** package ‘bmgarch’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ +using C++17 + + +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I"../inst/include" -I"/usr/local/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/usr/local/lib/R/site-library/BH/include' -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppParallel/include' -I'/usr/local/lib/R/site-library/RcppEigen/include' -I'/usr/local/lib/R/site-library/rstan/include' -I'/usr/local/lib/R/site-library/StanHeaders/include' -I/usr/local/include -I'/usr/local/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +In file included from /usr/local/lib/R/site-library/RcppEigen/include/Eigen/Core:205, +... +** inst +** byte-compile and prepare package for lazy loading +** help +*** installing help indices +** building package indices +** testing if installed package can be loaded from temporary location +** checking absolute paths in shared objects and dynamic libraries +** testing if installed package can be loaded from final location +** testing if installed package keeps a record of temporary installation path +* DONE (bmgarch) + + +``` +# bonsai + +
+ +* Version: 0.3.1 +* GitHub: https://github.com/tidymodels/bonsai +* Source code: https://github.com/cran/bonsai +* Date/Publication: 2024-07-23 15:00:01 UTC +* Number of recursive dependencies: 135 + +Run `revdepcheck::cloud_details(, "bonsai")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(bonsai) + Loading required package: parsnip + > + > test_check("bonsai") + [ FAIL 4 | WARN 0 | SKIP 6 | PASS 78 ] + + ... + i Actually got a with text: + Success has been forced + ── Failure ('test-aorsf.R:102:3'): classification model object ───────────────── + Expected `... <- NULL` to run without any conditions. + i Actually got a with text: + Success has been forced + + [ FAIL 4 | WARN 0 | SKIP 6 | PASS 78 ] + Error: Test failures + Execution halted + ``` + +# cfr + +
+ +* Version: 0.1.2 +* GitHub: https://github.com/epiverse-trace/cfr +* Source code: https://github.com/cran/cfr +* Date/Publication: 2024-09-26 09:50:02 UTC +* Number of recursive dependencies: 86 + +Run `revdepcheck::cloud_details(, "cfr")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘spelling.R’ + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/tests.html + ... + i Actually got a with text: + Success has been forced + ── Failure ('test-prepare_data.R:119:3'): Prepare grouped `` data ── + Expected `prepare_data(...)` to run without any conditions. + i Actually got a with text: + Success has been forced + + [ FAIL 4 | WARN 2 | SKIP 11 | PASS 108 ] + Error: Test failures + Execution halted + ``` + +# chainbinomial + +
+ +* Version: 0.1.5 +* GitHub: NA +* Source code: https://github.com/cran/chainbinomial +* Date/Publication: 2024-05-27 17:40:09 UTC +* Number of recursive dependencies: 56 + +Run `revdepcheck::cloud_details(, "chainbinomial")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/tests.html + > # * https://testthat.r-lib.org/reference/test_package.html#special-files + ... + i Actually got a with text: + Success has been forced + ── Failure ('test_1.R:1150:3'): making predictions ───────────────────────────── + Expected `... <- NULL` to run without any conditions. + i Actually got a with text: + Success has been forced + + [ FAIL 63 | WARN 0 | SKIP 0 | PASS 471 ] + Error: Test failures + Execution halted + ``` + +# charlatan + +
+ +* Version: 0.6.1 +* GitHub: https://github.com/ropensci/charlatan +* Source code: https://github.com/cran/charlatan +* Date/Publication: 2024-10-17 05:20:02 UTC +* Number of recursive dependencies: 56 + +Run `revdepcheck::cloud_details(, "charlatan")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘spelling.R’ + Running ‘test-all.R’ + Running the tests in ‘tests/test-all.R’ failed. + Complete output: + > library("testthat") + > test_check("charlatan") + Loading required package: charlatan + [ FAIL 7 | WARN 0 | SKIP 4 | PASS 2017 ] + + ══ Skipped tests (4) ═══════════════════════════════════════════════════════════ + ... + i Actually got a with text: + Success has been forced + ── Failure ('test-backwards-comp.R:97:3'): fakir revdep still works ──────────── + Expected `ch_name(1)` to run without any conditions. + i Actually got a with text: + Success has been forced + + [ FAIL 7 | WARN 0 | SKIP 4 | PASS 2017 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 12.5Mb + sub-directories of 1Mb or more: + R 7.5Mb + doc 3.2Mb + help 1.5Mb + ``` + +# covidcast + +
+ +* Version: 0.5.2 +* GitHub: https://github.com/cmu-delphi/covidcast +* Source code: https://github.com/cran/covidcast +* Date/Publication: 2023-07-12 23:40:06 UTC +* Number of recursive dependencies: 92 + +Run `revdepcheck::cloud_details(, "covidcast")` for more info + +
+ +## Newly broken + +* checking running R code from vignettes ... ERROR + ``` + Errors in running code in vignettes: + when running code in ‘multi-signals.Rmd’ + ... + + > signals <- covidcast_signals(data_source = "jhu-csse", + + signal = c("confirmed_7dav_incidence_prop", "deaths_7dav_incidence_prop"), + + star .... [TRUNCATED] + + When sourcing ‘multi-signals.R’: + Error: Rate limit exceeded when fetching data from API anonymously. See the "API keys" section of the `covidcast_signal()` documentation for information on registering for an API key. + ... + Error: Rate limit exceeded when fetching data from API anonymously. See the "API keys" section of the `covidcast_signal()` documentation for information on registering for an API key. + ℹ Message from server: + ℹ Rate limit exceeded for anonymous queries. To remove this limit, register a free API key at https://api.delphi.cmu.edu/epidata/admin/registration_form + Execution halted + + ‘correlation-utils.Rmd’ using ‘UTF-8’... OK + ‘covidcast.Rmd’ using ‘UTF-8’... OK + ‘external-data.Rmd’ using ‘UTF-8’... OK + ‘multi-signals.Rmd’ using ‘UTF-8’... failed + ‘plotting-signals.Rmd’ using ‘UTF-8’... failed + ``` + +* checking re-building of vignette outputs ... NOTE + ``` + Error(s) in re-building vignettes: + --- re-building ‘correlation-utils.Rmd’ using rmarkdown + --- finished re-building ‘correlation-utils.Rmd’ + + --- re-building ‘covidcast.Rmd’ using rmarkdown + + Quitting from lines 38-45 [unnamed-chunk-1] (covidcast.Rmd) + Error: processing vignette 'covidcast.Rmd' failed with diagnostics: + Rate limit exceeded when fetching data from API anonymously. See the "API keys" section of the `covidcast_signal()` documentation for information on registering for an API key. + ℹ Message from server: + ℹ Rate limit exceeded for anonymous queries. To remove this limit, register a free API key at https://api.delphi.cmu.edu/epidata/admin/registration_form + --- failed re-building ‘covidcast.Rmd’ + + --- re-building ‘external-data.Rmd’ using rmarkdown + ``` + +## In both + +* checking data for non-ASCII characters ... NOTE + ``` + Note: found 20 marked UTF-8 strings + ``` + +# cryptoQuotes + +
+ +* Version: 1.3.2 +* GitHub: https://github.com/serkor1/cryptoQuotes +* Source code: https://github.com/cran/cryptoQuotes +* Date/Publication: 2024-11-07 12:30:11 UTC +* Number of recursive dependencies: 126 + +Run `revdepcheck::cloud_details(, "cryptoQuotes")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview + > # * https://testthat.r-lib.org/articles/special-files.html + ... + i Actually got a with text: + Success has been forced + ── Failure ('test-charting.R:146:5'): Charting with ohlc bars and indicators ─── + Expected `test_chart` to run without any conditions. + i Actually got a with text: + Success has been forced + + [ FAIL 2 | WARN 0 | SKIP 15 | PASS 43 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 13.1Mb + sub-directories of 1Mb or more: + doc 11.7Mb + help 1.2Mb + ``` + +# diseasystore + +
+ +* Version: 0.2.2 +* GitHub: https://github.com/ssi-dk/diseasystore +* Source code: https://github.com/cran/diseasystore +* Date/Publication: 2024-07-15 12:00:02 UTC +* Number of recursive dependencies: 130 + +Run `revdepcheck::cloud_details(, "diseasystore")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘spelling.R’ + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/tests.html + ... + ── Failure ('test-0_documentation.R:10:7'): rd_templates works ───────────────── + Expected `do.call(rd_fun, args = list(type = type))` to run without any conditions. + i Actually got a with text: + Success has been forced + + [ FAIL 43 | WARN 0 | SKIP 1 | PASS 533 ] + Error: Test failures + In addition: Warning message: + call dbDisconnect() when finished working with a connection + Execution halted + ``` + +# divvy + +
+ +* Version: 1.0.0 +* GitHub: https://github.com/GawainAntell/divvy +* Source code: https://github.com/cran/divvy +* Date/Publication: 2023-10-26 08:20:03 UTC +* Number of recursive dependencies: 91 + +Run `revdepcheck::cloud_details(, "divvy")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(divvy) + > + > test_check("divvy") + [ FAIL 5 | WARN 0 | SKIP 0 | PASS 32 ] + + ══ Failed tests ════════════════════════════════════════════════════════════════ + ... + i Actually got a with text: + Success has been forced + ── Failure ('test_subsample.R:64:3'): projected coords ok ────────────────────── + Expected `bandit(...)` to run without any conditions. + i Actually got a with text: + Success has been forced + + [ FAIL 5 | WARN 0 | SKIP 0 | PASS 32 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking Rd cross-references ... NOTE + ``` + Package unavailable to check Rd xrefs: ‘palaeoverse’ + ``` + +# dsmmR + +
+ +* Version: 1.0.5 +* GitHub: https://github.com/Mavrogiannis-Ioannis/dsmmR +* Source code: https://github.com/cran/dsmmR +* Date/Publication: 2024-07-28 00:20:01 UTC +* Number of recursive dependencies: 44 + +Run `revdepcheck::cloud_details(, "dsmmR")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview + > # * https://testthat.r-lib.org/articles/special-files.html + ... + i Actually got a with text: + Success has been forced + ── Failure ('test-parametric_dsmm.R:176:5'): parametric_dsmm(); p is not drifting, f is drifting. ── + Expected `... <- NULL` to run without any conditions. + i Actually got a with text: + Success has been forced + + [ FAIL 12 | WARN 0 | SKIP 12 | PASS 15 ] + Error: Test failures + Execution halted + ``` + +# ecocbo + +
+ +* Version: 0.12.0 +* GitHub: NA +* Source code: https://github.com/cran/ecocbo +* Date/Publication: 2024-08-21 08:00:02 UTC +* Number of recursive dependencies: 114 + +Run `revdepcheck::cloud_details(, "ecocbo")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/tests.html + > # * https://testthat.r-lib.org/reference/test_package.html#special-files + ... + i Actually got a with text: + Success has been forced + ── Failure ('test-sim_cbo.R:6:3'): function works in its two modes ───────────── + Expected `sim_cbo(compVar, multSE = 0.14, ck = 100, cj = 2500)` to run without any conditions. + i Actually got a with text: + Success has been forced + + [ FAIL 4 | WARN 0 | SKIP 0 | PASS 23 ] + Error: Test failures + Execution halted + ``` + +# epiCo + +
+ +* Version: 1.0.0 +* GitHub: https://github.com/epiverse-trace/epiCo +* Source code: https://github.com/cran/epiCo +* Date/Publication: 2024-06-28 09:40:05 UTC +* Number of recursive dependencies: 128 + +Run `revdepcheck::cloud_details(, "epiCo")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/tests.html + > # * https://testthat.r-lib.org/reference/test_package.html#special-files + ... + ▆ + 1. └─testthat::expect_message(...) at test-spatiotemporal.R:78:3 + 2. └─testthat:::expect_condition_matching(...) + 3. └─testthat:::cnd_matcher(...) + 4. └─cli::cli_abort(...) + 5. └─rlang::abort(...) + + [ FAIL 1 | WARN 8 | SKIP 0 | PASS 114 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 6.2Mb + sub-directories of 1Mb or more: + data 2.0Mb + extdata 2.9Mb + ``` + +# ergm + +
+ +* Version: 4.7.5 +* GitHub: https://github.com/statnet/ergm +* Source code: https://github.com/cran/ergm +* Date/Publication: 2024-11-06 14:10:05 UTC +* Number of recursive dependencies: 87 + +Run `revdepcheck::cloud_details(, "ergm")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘requireNamespaceTest.R’ + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # File tests/testthat.R in package ergm, part of the + > # Statnet suite of packages for network analysis, https://statnet.org . + > # + > # This software is distributed under the GPL-3 license. It is free, + > # open source, and has the attribution requirements (GPL Section 7) at + > # https://statnet.org/attribution . + ... + + ══ Failed tests ════════════════════════════════════════════════════════════════ + ── Failure ('test-nonunique-names.R:15:3'): MCMC diagnostics produced even when names are not unique ── + Expected `mcmc.diagnostics(fit)` to run without any conditions. + i Actually got a with text: + Success has been forced + + [ FAIL 1 | WARN 2 | SKIP 0 | PASS 4217 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking running R code from vignettes ... ERROR + ``` + Errors in running code in vignettes: + when running code in ‘ergm.Rmd’ + ... + Obtaining the responsible dyads. + Evaluating the predictor and response matrix. + Maximizing the pseudolikelihood. + Finished MPLE. + Starting Monte Carlo maximum likelihood estimation (MCMLE): + Iteration 1 of at most 60: + + ... + When sourcing ‘ergm.R’: + Error: Number of edges in a simulated network exceeds that in the observed by a factor of more than 20. This is a strong indicator of model degeneracy or a very poor starting parameter configuration. If you are reasonably certain that neither of these is the case, increase the MCMLE.density.guard control.ergm() parameter. + Execution halted + + ‘Network-Callback-API.Rmd’ using ‘UTF-8’... OK + ‘Proposal-Lookup-API.Rmd’ using ‘UTF-8’... OK + ‘Terms-API.Rmd’ using ‘UTF-8’... OK + ‘ergm-term-crossRef.Rmd’ using ‘UTF-8’... OK + ‘ergm.Rmd’ using ‘UTF-8’... failed + ‘nodal_attributes.Rmd’ using ‘UTF-8’... OK + ``` + +* checking installed package size ... NOTE + ``` + installed size is 8.3Mb + sub-directories of 1Mb or more: + R 1.5Mb + doc 1.6Mb + help 1.6Mb + libs 2.8Mb + ``` + +# ieegio + +
+ +* Version: 0.0.2 +* GitHub: https://github.com/dipterix/ieegio +* Source code: https://github.com/cran/ieegio +* Date/Publication: 2024-10-31 23:20:02 UTC +* Number of recursive dependencies: 88 + +Run `revdepcheck::cloud_details(, "ieegio")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘ieegio-Ex.R’ failed + The error most likely occurred in: + + > ### Name: imaging-volume + > ### Title: Read and write volume data + > ### Aliases: imaging-volume read_volume write_volume io_read_mgz + > ### io_write_mgz io_write_mgz.ieegio_volume io_write_mgz.ieegio_mgh + > ### io_write_mgz.nifti io_write_mgz.niftiImage + > ### io_write_mgz.ants.core.ants_image.ANTsImage io_write_mgz.array + > ### io_read_nii io_write_nii io_write_nii.ieegio_nifti + ... + + # clean up + + unlink(f) + + unlink(f2) + + + + } + + Warning in check_forbidden_install("Conda Environments") : + cannot install Conda Environments during R CMD check + Error: Unable to find conda binary. Is Anaconda installed? + Execution halted + ``` + +# infer + +
+ +* Version: 1.0.7 +* GitHub: https://github.com/tidymodels/infer +* Source code: https://github.com/cran/infer +* Date/Publication: 2024-03-25 21:50:02 UTC +* Number of recursive dependencies: 126 + +Run `revdepcheck::cloud_details(, "infer")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/tests.html + > # * https://testthat.r-lib.org/reference/test_package.html#special-files + ... + • visualize/viz-assume-z-p-val-left.svg + • visualize/viz-assume-z-p-val-right.svg + • visualize/viz-assume-z.svg + • visualize/viz-fit-conf-int.svg + • visualize/viz-fit-no-h0.svg + • visualize/viz-fit-p-val-both.svg + • visualize/viz-fit-p-val-left.svg + • visualize/viz-fit-p-val-right.svg + Error: Test failures + Execution halted + ``` + +# innsight + +
+ +* Version: 0.3.0 +* GitHub: https://github.com/bips-hb/innsight +* Source code: https://github.com/cran/innsight +* Date/Publication: 2023-12-21 16:00:02 UTC +* Number of recursive dependencies: 135 + +Run `revdepcheck::cloud_details(, "innsight")` for more info + +
+ +## Newly broken + +* checking installed package size ... NOTE + ``` + installed size is 5.2Mb + sub-directories of 1Mb or more: + R 1.5Mb + doc 3.2Mb + ``` + +## In both + +* checking running R code from vignettes ... ERROR + ``` + Errors in running code in vignettes: + when running code in ‘Example_1_iris.Rmd’ + ... + + > set.seed(1111) + + > options(width = 500) + + > torch::torch_manual_seed(1111) + + ... + + 2)), nn_flatten(), nn_li .... [TRUNCATED] + + When sourcing ‘detailed_overview.R’: + Error: Lantern is not loaded. Please use `install_torch()` to install additional dependencies. + Execution halted + + ‘Example_1_iris.Rmd’ using ‘UTF-8’... failed + ‘Example_2_penguin.Rmd’ using ‘UTF-8’... failed + ‘detailed_overview.Rmd’ using ‘UTF-8’... failed + ‘innsight.Rmd’ using ‘UTF-8’... OK + ``` + +# intergraph + +
+ +* Version: 2.0-4 +* GitHub: https://github.com/mbojan/intergraph +* Source code: https://github.com/cran/intergraph +* Date/Publication: 2024-02-01 17:30:02 UTC +* Number of recursive dependencies: 61 + +Run `revdepcheck::cloud_details(, "intergraph")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(intergraph) + > + > test_check("intergraph") + [ FAIL 1 | WARN 3 | SKIP 1 | PASS 53 ] + + ══ Skipped tests (1) ═══════════════════════════════════════════════════════════ + ... + + ══ Failed tests ════════════════════════════════════════════════════════════════ + ── Failure ('test-netcompare.R:2:3'): netcompare just works ──────────────────── + Expected `r <- netcompare(exIgraph, exIgraph)` to run without any conditions. + i Actually got a with text: + Success has been forced + + [ FAIL 1 | WARN 3 | SKIP 1 | PASS 53 ] + Error: Test failures + Execution halted + ``` + +# JointFPM + +
+ +* Version: 1.2.1 +* GitHub: https://github.com/entjos/JointFPM +* Source code: https://github.com/cran/JointFPM +* Date/Publication: 2024-06-19 21:40:14 UTC +* Number of recursive dependencies: 43 + +Run `revdepcheck::cloud_details(, "JointFPM")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview + > # * https://testthat.r-lib.org/articles/special-files.html + ... + + ══ Failed tests ════════════════════════════════════════════════════════════════ + ── Failure ('test-summary.JointFPM.R:2:3'): Summary output is stable ─────────── + Expected `{ ... }` to run without any conditions. + i Actually got a with text: + Success has been forced + + [ FAIL 1 | WARN 0 | SKIP 13 | PASS 19 ] + Error: Test failures + Execution halted + ``` + +# linelist + +
+ +* Version: 1.1.4 +* GitHub: https://github.com/epiverse-trace/linelist +* Source code: https://github.com/cran/linelist +* Date/Publication: 2024-06-17 13:40:04 UTC +* Number of recursive dependencies: 58 + +Run `revdepcheck::cloud_details(, "linelist")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘spelling.R’ + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(linelist) + > + > test_df <- as.data.frame(test_check("linelist")) + Starting 2 test processes + [ FAIL 2 | WARN 0 | SKIP 9 | PASS 132 ] + ... + i Actually got a with text: + Success has been forced + ── Failure ('test-square_bracket.R:128:3'): $<- allows innocuous tag modification ── + Expected `x$speed <- 1L` to run without any conditions. + i Actually got a with text: + Success has been forced + + [ FAIL 2 | WARN 0 | SKIP 9 | PASS 132 ] + Error: Test failures + Execution halted + ``` + +# literanger + +
+ +* Version: 0.1.1 +* GitHub: NA +* Source code: https://github.com/cran/literanger +* Date/Publication: 2024-09-22 21:30:05 UTC +* Number of recursive dependencies: 34 -Run `revdepcheck::cloud_details(, "miWQS")` for more info +Run `revdepcheck::cloud_details(, "literanger")` for more info
## Newly broken -* checking re-building of vignette outputs ... ERROR +* checking tests ... ERROR ``` - Error(s) in re-building vignettes: - --- re-building ‘README.Rmd’ using rmarkdown - tlmgr: package repository https://ctan.mirrors.hoobly.com/systems/texlive/tlnet (verified) - [1/1, ??:??/??:??] install: grffile [4k] - running mktexlsr ... - done running mktexlsr. - tlmgr: package log updated: /opt/TinyTeX/texmf-var/web2c/tlmgr.log - tlmgr: command log updated: /opt/TinyTeX/texmf-var/web2c/tlmgr-commands.log - tlmgr: package repository https://mirror.mwt.me/ctan/systems/texlive/tlnet (verified) - [1/2, ??:??/??:??] install: biblatex [249k] - ... - Warning: (biblatex) and rerun LaTeX afterwards. - Error: processing vignette 'README.Rmd' failed with diagnostics: - Failed to build the bibliography via biber - --- failed re-building ‘README.Rmd’ - - SUMMARY: processing the following file failed: - ‘README.Rmd’ - - Error: Vignette re-building failed. - Execution halted + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(literanger) + > + > test_check('literanger') + [ FAIL 4 | WARN 0 | SKIP 0 | PASS 225 ] + + ══ Failed tests ════════════════════════════════════════════════════════════════ + ... + ℹ Actually got a with text: + Success has been forced + ── Failure ('test-io.R:31:5'): can read and write a regression forest ────────── + Expected `rf_copy <- read_literanger(file = file_name)` to run without any conditions. + ℹ Actually got a with text: + Success has been forced + + [ FAIL 4 | WARN 0 | SKIP 0 | PASS 225 ] + Error: Test failures + Execution halted ``` -## Newly fixed +## In both + +* checking whether package ‘literanger’ can be installed ... WARNING + ``` + Found the following significant warnings: + /usr/include/c++/13/bits/stl_algobase.h:437:30: warning: ‘void* __builtin_memmove(void*, const void*, long unsigned int)’ writing between 9 and 9223372036854775807 bytes into a region of size 8 overflows the destination [-Wstringop-overflow=] + See ‘/tmp/workdir/literanger/new/literanger.Rcheck/00install.out’ for details. + ``` + +* checking installed package size ... NOTE + ``` + installed size is 14.5Mb + sub-directories of 1Mb or more: + libs 14.3Mb + ``` + +# madrat + +
+ +* Version: 3.6.4 +* GitHub: https://github.com/pik-piam/madrat +* Source code: https://github.com/cran/madrat +* Date/Publication: 2023-08-23 14:30:08 UTC +* Number of recursive dependencies: 79 + +Run `revdepcheck::cloud_details(, "madrat")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(madrat) + Loading required package: magclass + > + > test_check("madrat") + [ FAIL 3 | WARN 2 | SKIP 8 | PASS 581 ] + + ... + + `dim(actual)` is an integer vector (1, 1, 1) + `dim(expected)` is absent + + `dimnames(actual)` is a list + `dimnames(expected)` is absent + + [ FAIL 3 | WARN 2 | SKIP 8 | PASS 581 ] + Error: Test failures + Execution halted + ``` + +# OlinkAnalyze + +
-* checking re-building of vignette outputs ... WARNING +* Version: 4.0.1 +* GitHub: https://github.com/Olink-Proteomics/OlinkRPackage +* Source code: https://github.com/cran/OlinkAnalyze +* Date/Publication: 2024-09-24 11:50:02 UTC +* Number of recursive dependencies: 207 + +Run `revdepcheck::cloud_details(, "OlinkAnalyze")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(OlinkAnalyze) + > + > test_check("OlinkAnalyze") + Variables and covariates converted from character to factors: Site + ANOVA model fit to each assay: NPX~Site + Variables and covariates converted from character to factors: Time + ... + • linear_mixed_model/lmer-plot.svg + • olink_Pathway_Heatmap/gsea-heatmap.svg + • olink_Pathway_Heatmap/ora-heatmap-with-keyword.svg + • olink_Pathway_Visualization/gsea-vis-with-keyword.svg + • olink_Pathway_Visualization/gsea-visualization.svg + • olink_Pathway_Visualization/ora-vis-with-keyword.svg + • olink_Pathway_Visualization/ora-vis-with-terms.svg + • olink_qc_plot/qc-plot-with-coloroption.svg + Error: Test failures + Execution halted + ``` + +## In both + +* checking running R code from vignettes ... ERROR + ``` + Errors in running code in vignettes: + when running code in ‘Vignett.Rmd’ + ... + lme4 was built with Matrix ABI version 1 + Current Matrix ABI version is 0 + Please re-install lme4 from source or restore original ‘Matrix’ package + Duplicate SampleID(s) detected: + CONTROL_SAMPLE_AS 1 + CONTROL_SAMPLE_AS 2 + + ... + When sourcing ‘Vignett.R’: + Error: function 'cholmod_factor_ldetA' not provided by package 'Matrix' + Execution halted + + ‘LOD.Rmd’ using ‘UTF-8’... OK + ‘OutlierExclusion.Rmd’ using ‘UTF-8’... OK + ‘Vignett.Rmd’ using ‘UTF-8’... failed + ‘bridging_E3072toEHT.Rmd’ using ‘UTF-8’... OK + ‘bridging_introduction.Rmd’ using ‘UTF-8’... OK + ‘plate_randomizer.Rmd’ using ‘UTF-8’... OK + ``` + +* checking re-building of vignette outputs ... NOTE ``` Error(s) in re-building vignettes: + --- re-building ‘LOD.Rmd’ using rmarkdown + --- finished re-building ‘LOD.Rmd’ + + --- re-building ‘OutlierExclusion.Rmd’ using rmarkdown + --- finished re-building ‘OutlierExclusion.Rmd’ + + --- re-building ‘Vignett.Rmd’ using rmarkdown + ``` + +# palaeoSig + +
+ +* Version: 2.1-3 +* GitHub: https://github.com/richardjtelford/palaeoSig +* Source code: https://github.com/cran/palaeoSig +* Date/Publication: 2023-03-10 09:30:02 UTC +* Number of recursive dependencies: 103 + +Run `revdepcheck::cloud_details(, "palaeoSig")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/tests.html + > # * https://testthat.r-lib.org/reference/test_package.html#special-files + ... + i Actually got a with text: + Success has been forced + ── Failure ('test-test-randomTF.R:6:3'): randomTF works ──────────────────────── + Expected `randomTF(...)` to run without any conditions. + i Actually got a with text: + Success has been forced + + [ FAIL 2 | WARN 0 | SKIP 0 | PASS 0 ] + Error: Test failures + Execution halted + ``` + +# posterior + +
+ +* Version: 1.6.0 +* GitHub: https://github.com/stan-dev/posterior +* Source code: https://github.com/cran/posterior +* Date/Publication: 2024-07-03 23:00:02 UTC +* Number of recursive dependencies: 118 + +Run `revdepcheck::cloud_details(, "posterior")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(posterior) + This is posterior version 1.6.0 + + Attaching package: 'posterior' + + The following objects are masked from 'package:stats': + ... + + ══ Failed tests ════════════════════════════════════════════════════════════════ + ── Failure ('test-rvar-.R:204:3'): scale_type() works ──────────────────── + Expected `ggplot2::scale_type(rvar())` to run without any conditions. + ℹ Actually got a with text: + Success has been forced + + [ FAIL 1 | WARN 0 | SKIP 5 | PASS 1664 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking running R code from vignettes ... ERROR + ``` + Errors in running code in vignettes: + when running code in ‘rvar.Rmd’ ... - --- re-building ‘README.Rmd’ using rmarkdown + > y + rvar<4000>[3] mean ± sd: + [1] 3.00 ± 1.00 2.02 ± 0.99 0.96 ± 0.99 + + > X + y - tlmgr: Remote database (rev 68993) seems to be older than local (rev 68995 of texlive-scripts); please use different mirror or wait a day or so. - Warning in system2("tlmgr", args, ...) : - running command ''tlmgr' search --file --global '/grffile.sty'' had status 1 - ! LaTeX Error: File `grffile.sty' not found. + When sourcing ‘rvar.R’: + Error: Cannot broadcast array of shape [4000,3,1] to array of shape [4000,4,3]: + All dimensions must be 1 or equal. + Execution halted - ! Emergency stop. + ‘pareto_diagnostics.Rmd’ using ‘UTF-8’... OK + ‘posterior.Rmd’ using ‘UTF-8’... OK + ‘rvar.Rmd’ using ‘UTF-8’... failed + ``` + +# rcausim + +
+ +* Version: 0.1.1 +* GitHub: NA +* Source code: https://github.com/cran/rcausim +* Date/Publication: 2024-06-24 15:30:09 UTC +* Number of recursive dependencies: 152 + +Run `revdepcheck::cloud_details(, "rcausim")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview + > # * https://testthat.r-lib.org/articles/special-files.html + ... + i Actually got a with text: + Success has been forced + ── Failure ('test-time_varying.R:406:5'): 'time_varying' handles 'func' where the classes of the generated data can be any classes. ── + Expected `time_varying(functions2, simulated_data, T_max)` to run without any conditions. + i Actually got a with text: + Success has been forced + + [ FAIL 4 | WARN 0 | SKIP 0 | PASS 57 ] + Error: Test failures + Execution halted + ``` + +# rcpptimer + +
+ +* Version: 1.2.1 +* GitHub: https://github.com/BerriJ/rcpptimer +* Source code: https://github.com/cran/rcpptimer +* Date/Publication: 2024-09-22 21:40:02 UTC +* Number of recursive dependencies: 42 + +Run `revdepcheck::cloud_details(, "rcpptimer")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > Sys.setenv("OMP_THREAD_LIMIT" = 2) + > + > library(testthat) + > library(rcpptimer) + > + > test_check("rcpptimer") + [ FAIL 1 | WARN 0 | SKIP 0 | PASS 90 ] + ... + + ══ Failed tests ════════════════════════════════════════════════════════════════ + ── Failure ('test_print.rcpptimer.R:89:3'): Check wether the print method of the rcpp timer scales correctly ── + Expected `out <- test_misc(tic = FALSE, toc = FALSE, scoped_timer = FALSE)` to run without any conditions. + i Actually got a with text: + Success has been forced + + [ FAIL 1 | WARN 0 | SKIP 0 | PASS 90 ] + Error: Test failures + Execution halted + ``` + +# rdecision + +
+ +* Version: 1.2.1 +* GitHub: https://github.com/ajsims1704/rdecision +* Source code: https://github.com/cran/rdecision +* Date/Publication: 2024-06-09 22:10:02 UTC +* Number of recursive dependencies: 88 + +Run `revdepcheck::cloud_details(, "rdecision")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(rdecision) + > test_check("rdecision") + [ FAIL 4 | WARN 0 | SKIP 21 | PASS 1482 ] + + ══ Skipped tests (21) ══════════════════════════════════════════════════════════ + • On CRAN (21): 'test-BetaDistribution.R:89:3', 'test-BetaModVar.R:134:3', ... + i Actually got a with text: + Success has been forced + ── Failure ('test-DecisionTree.R:486:3'): long node labels are not clipped ───── + Expected `dt$draw(border = TRUE, fontsize = 10)` to run without any conditions. + i Actually got a with text: + Success has been forced + + [ FAIL 4 | WARN 0 | SKIP 21 | PASS 1482 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking running R code from vignettes ... ERROR + ``` + Errors in running code in vignettes: + when running code in ‘DT00-DecisionTreeTutorial.Rmd’ + ... + > knitr::opts_chunk$set(collapse = TRUE, echo = FALSE, + + comment = "#>") - Error: processing vignette 'README.Rmd' failed with diagnostics: - LaTeX failed to compile /tmp/workdir/miWQS/old/miWQS.Rcheck/vign_test/miWQS/vignettes/README.tex. See https://yihui.org/tinytex/r/#debugging for debugging tips. See README.log for more info. - --- failed re-building ‘README.Rmd’ + > library("rdecision") - SUMMARY: processing the following file failed: - ‘README.Rmd’ + > dt$draw() - Error: Vignette re-building failed. + ... + Error: could not find function "gv2png" Execution halted + + ‘DT00-DecisionTreeTutorial.Rmd’ using ‘UTF-8’... failed + ‘DT01-Sumatriptan.Rmd’ using ‘UTF-8’... failed + ‘DT02-Tegaderm.Rmd’ using ‘UTF-8’... OK + ‘DT03-ShaleGas.Rmd’ using ‘UTF-8’... failed + ‘GT01-NewScientistPuzzle.Rmd’ using ‘UTF-8’... failed + ‘SM01-HIV.Rmd’ using ‘UTF-8’... failed + ‘SM02-TKR.Rmd’ using ‘UTF-8’... failed + ``` + +# REDCapR + +
+ +* Version: 1.3.0 +* GitHub: https://github.com/OuhscBbmc/REDCapR +* Source code: https://github.com/cran/REDCapR +* Date/Publication: 2024-10-23 09:10:02 UTC +* Number of recursive dependencies: 94 + +Run `revdepcheck::cloud_details(, "REDCapR")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘spelling.R’ + Running ‘test-all.R’ + Running the tests in ‘tests/test-all.R’ failed. + Complete output: + > # Modeled after the R6 testing structure: https://github.com/wch/R6/blob/master/tests/testthat.R + > library(testthat) + > library(REDCapR) + > # source("R/helpers-testing.R") + > + > # Sys.setenv("redcapr_test_server" = "bbmc") + ... + + ══ Failed tests ════════════════════════════════════════════════════════════════ + ── Failure ('test-validate-field-names.R:43:3'): assert_field_names -good ────── + Expected `assert_field_names(colnames(ds_good))` to run without any conditions. + i Actually got a with text: + Success has been forced + + [ FAIL 1 | WARN 0 | SKIP 252 | PASS 145 ] + Error: Test failures + Execution halted + ``` + +# rgl + +
+ +* Version: 1.3.12 +* GitHub: https://github.com/dmurdoch/rgl +* Source code: https://github.com/cran/rgl +* Date/Publication: 2024-10-28 11:40:07 UTC +* Number of recursive dependencies: 107 + +Run `revdepcheck::cloud_details(, "rgl")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘bbox3dtests.R’ + Running ‘boundary.R’ + Running ‘indices.R’ + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > if (require(testthat)) { + + library(rgl) + + options(rgl.useNULL = TRUE) + + test_check("rgl") + ... + + ══ Failed tests ════════════════════════════════════════════════════════════════ + ── Failure ('test-getShaders.R:9:2'): getShaders works ───────────────────────── + Expected `getShaders(id)` to run without any conditions. + ℹ Actually got a with text: + Success has been forced + + [ FAIL 1 | WARN 0 | SKIP 0 | PASS 37 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 19.9Mb + sub-directories of 1Mb or more: + R 1.5Mb + doc 7.1Mb + fonts 1.5Mb + help 1.5Mb + libs 4.0Mb + useNULL 3.0Mb + ``` + +# scoringutils + +
+ +* Version: 2.0.0 +* GitHub: https://github.com/epiforecasts/scoringutils +* Source code: https://github.com/cran/scoringutils +* Date/Publication: 2024-10-31 20:40:02 UTC +* Number of recursive dependencies: 84 + +Run `revdepcheck::cloud_details(, "scoringutils")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(scoringutils) + scoringutils 2.0.0 introduces major changes. We'd love your feedback! + . To use the old version, + run: `remotes::install_github('epiforecasts/scoringutils@v1.2.2')` + This message is displayed once per session. + > + ... + • get-coverage/plot-quantile-coverage.svg + • get-forecast-counts/plot-available-forecasts.svg + • pairwise_comparison/plot-pairwise-comparison-pval.svg + • pairwise_comparison/plot-pairwise-comparison.svg + • plot_heatmap/plot-heatmap.svg + • plot_wis/plot-wis-flip.svg + • plot_wis/plot-wis-no-relative.svg + • plot_wis/plot-wis.svg + Error: Test failures + Execution halted + ``` + +# sonicscrewdriver + +
+ +* Version: 0.0.7 +* GitHub: https://github.com/edwbaker/SonicScrewdriveR +* Source code: https://github.com/cran/sonicscrewdriver +* Date/Publication: 2024-05-11 20:50:02 UTC +* Number of recursive dependencies: 147 + +Run `revdepcheck::cloud_details(, "sonicscrewdriver")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘spelling.R’ + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview + ... + i Actually got a with text: + Success has been forced + ── Failure ('test-sweptsine.R:14:3'): Output in correct format ───────────────── + Expected `validateIsWave(sweptsine(output = "wave"))` to run without any conditions. + i Actually got a with text: + Success has been forced + + [ FAIL 3 | WARN 0 | SKIP 7 | PASS 836 ] + Error: Test failures + Execution halted + ``` + +# StratPal + +
+ +* Version: 0.2.0 +* GitHub: https://github.com/MindTheGap-ERC/StratPal +* Source code: https://github.com/cran/StratPal +* Date/Publication: 2024-10-04 06:50:02 UTC +* Number of recursive dependencies: 56 + +Run `revdepcheck::cloud_details(, "StratPal")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘spelling.R’ + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview + ... + i Actually got a with text: + Success has been forced + ── Failure ('test_strict_stasis_sl.R:2:3'): runs without problems ────────────── + Expected `strict_stasis_sl(1:3)` to run without any conditions. + i Actually got a with text: + Success has been forced + + [ FAIL 6 | WARN 0 | SKIP 0 | PASS 66 ] + Error: Test failures + Execution halted + ``` + +# TiPS + +
+ +* Version: 1.2.3 +* GitHub: NA +* Source code: https://github.com/cran/TiPS +* Date/Publication: 2023-05-23 14:02:06 UTC +* Number of recursive dependencies: 50 + +Run `revdepcheck::cloud_details(, "TiPS")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... NOTE + ``` + Error(s) in re-building vignettes: + --- re-building ‘TiPS.Rmd’ using rmarkdown + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 6.7Mb + sub-directories of 1Mb or more: + doc 1.7Mb + libs 4.4Mb + ``` + +# vines + +
+ +* Version: 1.1.5 +* GitHub: https://github.com/yasserglez/vines +* Source code: https://github.com/cran/vines +* Date/Publication: 2016-07-28 11:49:43 +* Number of recursive dependencies: 41 + +Run `revdepcheck::cloud_details(, "vines")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library("testthat") + > library("vines") + Loading required package: copula + > + > test_check("vines", reporter = "summary") + h: + h: 1 + ... + ── 2. Error ('test-hinverse.R:3:1'): (code run outside of `test_that()`) ─────── + Error in `testthat:::test_code(new_desc, substitute(code), env = env)`: argument "reporter" is missing, with no default + Backtrace: + ▆ + 1. └─vines:::test_that_for_each_copula(...) at test-hinverse.R:3:1 + 2. └─testthat:::test_code(new_desc, substitute(code), env = env) at tests/testthat/helper-copulas.R:37:13 + + ══ DONE ════════════════════════════════════════════════════════════════════════ + Error: Test failures + Execution halted + ``` + +# WeightIt + +
+ +* Version: 1.3.2 +* GitHub: https://github.com/ngreifer/WeightIt +* Source code: https://github.com/cran/WeightIt +* Date/Publication: 2024-11-05 09:10:03 UTC +* Number of recursive dependencies: 151 + +Run `revdepcheck::cloud_details(, "WeightIt")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview + > # * https://testthat.r-lib.org/articles/special-files.html + ... + i Actually got a with text: + Success has been forced + ── Failure ('test-vcov_arg.R:557:3'): vcov arg works in vcov(), summary(), and anova() for multinom_weightit ── + Expected `anova(fit_asympt, fit_small_hc0, vcov = "asympt")` to run without any conditions. + i Actually got a with text: + Success has been forced + + [ FAIL 61 | WARN 1 | SKIP 0 | PASS 259 ] + Error: Test failures + Execution halted + ``` + +# xpose + +
+ +* Version: 0.4.18 +* GitHub: https://github.com/UUPharmacometrics/xpose +* Source code: https://github.com/cran/xpose +* Date/Publication: 2024-02-01 16:20:02 UTC +* Number of recursive dependencies: 108 + +Run `revdepcheck::cloud_details(, "xpose")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(xpose) + Loading required package: ggplot2 + + Attaching package: 'xpose' + + The following object is masked from 'package:stats': + ... + 8. │ └─base::do.call(...) at tests/testthat/helper-test_that_for_all.R:20:7 + 9. ├─testthat (local) ``(...) + 10. └─base::.handleSimpleError(...) + 11. └─purrr (local) h(simpleError(msg, call)) + 12. └─cli::cli_abort(...) + 13. └─rlang::abort(...) + + [ FAIL 1 | WARN 0 | SKIP 8 | PASS 377 ] + Error: Test failures + Execution halted ``` From 4e3446cb15fd4f96daf17a422c6cad3060647e26 Mon Sep 17 00:00:00 2001 From: Hadley Wickham Date: Thu, 7 Nov 2024 12:22:23 -0600 Subject: [PATCH 33/36] Fix `expect_no_condition()` buglet & re-check revdeps --- R/expect-no-condition.R | 8 +- revdep/README.md | 214 +- revdep/cran.md | 251 +- revdep/failures.md | 10541 +------------------- revdep/problems.md | 1756 +--- tests/testthat/test-expect-no-condition.R | 6 + 6 files changed, 95 insertions(+), 12681 deletions(-) diff --git a/R/expect-no-condition.R b/R/expect-no-condition.R index a3f8b40d9..678ac178e 100644 --- a/R/expect-no-condition.R +++ b/R/expect-no-condition.R @@ -96,10 +96,7 @@ expect_no_ <- function(base_class, capture <- function(code) { try_fetch( - { - code - succeed() - }, + code, !!base_class := function(cnd) { if (!matcher(cnd)) { return(zap()) @@ -122,6 +119,9 @@ expect_no_ <- function(base_class, } act <- quasi_capture(enquo(object), NULL, capture) + if (is.null(act$cap)) { + succeed() + } invisible(act$val) } diff --git a/revdep/README.md b/revdep/README.md index a36e6b15c..676ce3701 100644 --- a/revdep/README.md +++ b/revdep/README.md @@ -1,207 +1,13 @@ # Revdeps -## Failed to check (157) - -|package |version |error |warning |note | -|:-------------------|:----------|:------|:-------|:----| -|adjustedCurves |? | | | | -|ai |? | | | | -|aorsf |? | | | | -|apollo |0.3.4 |1 | | | -|arealDB |0.6.3 |1 | | | -|assessor |1.1.0 |1 | | | -|atom4R |0.3-3 |1 | | | -|BANAM |0.2.1 |1 | | | -|bayesCT |0.99.3 |1 | | | -|bayesDP |1.3.6 |1 | | | -|BayesFactor |0.9.12-4.7 |1 | | | -|bbknnR |1.1.1 |1 | | | -|BCClong |1.0.3 |1 | | | -|BFpack |1.3.0 |1 | | | -|BGGM |2.1.3 |1 | | | -|[bmgarch](failures.md#bmgarch)|2.0.0 |__+1__ | |-2 | -|bnnSurvival |? | | | | -|BSTZINB |1.0.1 |1 | | | -|BuyseTest |? | | | | -|CACIMAR |1.0.0 |1 | | | -|censored |? | | | | -|Certara.VPCResults |3.0.1 |1 | | | -|CGPfunctions |0.6.3 |1 | | | -|chipPCR |1.0-2 |1 | | | -|cmmr |? | | | | -|COMBO |1.2.0 |1 | | | -|contsurvplot |? | | | | -|counterfactuals |? | | | | -|CRMetrics |0.3.0 |1 | | | -|ctsem |3.10.1 |1 | | | -|dartR.base |? | | | | -|dataone |2.2.2 |1 | | | -|datapack |1.4.1 |1 | | | -|deeptrafo |? | | | | -|DepthProc |2.1.5 |1 | | | -|dibble |? | | | | -|drtmle |1.1.2 |1 | | | -|DWLS |0.1.0 |1 | | | -|easybgm |0.2.1 |1 | | | -|EcoEnsemble |1.1.0 |1 | | | -|ecolottery |1.0.0 |1 | | | -|EdSurvey |4.0.7 |1 | | | -|emplik |1.3-1 |1 | | | -|EpiEstim |2.2-4 |1 | | | -|epizootic |1.0.0 |1 | | | -|erah |2.0.1 |1 | | | -|evolqg |0.3-4 |1 | | | -|EWSmethods |? | | | | -|ezECM |1.0.0 |1 | | | -|FAIRmaterials |0.4.2.1 |1 | | | -|FastJM |? | | | | -|fdaPDE |1.1-20 |1 | | | -|flowr |0.9.11 |1 | |1 | -|ForecastComb |1.3.1 |1 | | | -|FoReco |1.0.0 |1 | | | -|frechet |0.3.0 |1 | | | -|FREEtree |0.1.0 |1 | | | -|gapfill |0.9.6-1 |1 | |1 | -|GeomComb |1.0 |1 | | | -|geomorph |? | | | | -|gllvm |1.4.3 |1 | | | -|gmoTree |? | | | | -|gpuR |2.0.6 |1 | | | -|hettx |0.1.3 |1 | | | -|Hmsc |3.0-13 |1 | | | -|iNZightPlots |2.15.3 |1 | | | -|iNZightRegression |1.3.4 |1 | | | -|JMH |? | | | | -|joineRML |0.4.6 |1 | | | -|jsmodule |? | | | | -|kmc |0.4-2 |1 | | | -|KMunicate |? | | | | -|Landmarking |? | | | | -|lavaSearch2 |? | | | | -|lnmixsurv |? | | | | -|locpolExpectile |0.1.1 |1 | | | -|loon.shiny |? | | | | -|loon.tourr |? | | | | -|lsirm12pl |1.3.3 |1 | | | -|marlod |0.1.1 |1 | | | -|mbsts |3.0 |1 | | | -|metajam |0.3.1 |1 | | | -|mHMMbayes |1.1.0 |1 | | | -|midasr |0.8 |1 | | | -|miWQS |0.4.4 |1 | | | -|mixAR |0.22.8 |1 | | | -|mlmts |1.1.2 |1 | | | -|mlr |? | | | | -|modeLLtest |1.0.4 |1 | | | -|multilevelmediation |0.3.1 |1 | | | -|multilevelTools |0.1.1 |1 | | | -|NCA |4.0.1 |1 | | | -|netcmc |1.0.2 |1 | | | -|newIMVC |0.1.0 |1 | | | -|nlpred |1.0.1 |1 | | | -|NMADiagT |0.1.2 |1 | | | -|nse |1.21 |1 | | | -|OasisR |? | | | | -|paleopop |2.1.6 |1 | | | -|pammtools |? | | | | -|params |0.7.3 |1 | | | -|PathwaySpace |? | | | | -|pcvr |1.1.1.0 |1 | | | -|poems |1.3.1 |1 | | | -|popEpi |? | | | | -|popstudy |1.0.1 |1 | | | -|powerly |1.8.6 |1 | | | -|pre |1.0.7 |1 | | | -|pscore |0.4.0 |1 | | | -|Publish |? | | | | -|qris |1.1.1 |1 | | | -|QTOCen |0.1.1 |1 | | | -|quantspec |1.2-4 |1 | | | -|quid |0.0.1 |1 | | | -|rddtools |1.6.0 |1 | | | -|rdflib |0.2.9 |1 | | | -|redland |1.0.17-18 |1 | | | -|RGraphSpace |? | | | | -|riskRegression |? | | | | -|rlme |0.5 |1 | | | -|robber |? | | | | -|robmed |1.1.0 |1 | | | -|RQdeltaCT |1.3.0 |1 | | | -|RRPP |? | | | | -|rstanarm |2.32.1 |1 | | | -|scAnnotate |0.3 |1 | | | -|SCIntRuler |0.99.6 |1 | | | -|scMappR |1.0.11 |1 | | | -|scperturbR |0.1.0 |1 | | | -|scpi |2.2.5 |1 | | | -|SCRIP |1.0.0 |1 | | | -|SensIAT |? | | | | -|SensMap |0.7 |1 | | | -|Seurat |5.1.0 |1 | |1 | -|shinyTempSignal |0.0.8 |1 | | | -|Signac |1.14.0 |1 | | | -|SimplyAgree |0.2.0 |1 | | | -|smoothAPC |0.3 |1 | | | -|SNPassoc |? | | | | -|snplinkage |? | | | | -|statsr |0.3.0 |1 | | | -|stR |0.7 |1 | | | -|survcompare |? | | | | -|survex |? | | | | -|survHE |? | | | | -|SurvMetrics |? | | | | -|TestAnaAPP |1.1.1 |1 | | | -|tidyEdSurvey |0.1.3 |1 | | | -|tidyseurat |0.8.0 |1 | | | -|tidyvpc |1.5.1 |1 | | | -|tramicp |? | | | | -|tramvs |? | | | | -|TriDimRegression |1.0.2 |1 | | | -|TSrepr |1.1.0 |1 | | | -|visa |0.1.0 |1 | | | -|wally |? | | | | -|zen4R |0.10 |1 | | | - -## New problems (38) - -|package |version |error |warning |note | -|:----------------|:--------|:--------|:-------|:--------| -|[admtools](problems.md#admtools)|0.4.0 |__+1__ | | | -|[adproclus](problems.md#adproclus)|2.0.0 |__+1__ | | | -|[arrow](problems.md#arrow)|17.0.0.1 |__+1__ | |2 | -|[bonsai](problems.md#bonsai)|0.3.1 |__+1__ | | | -|[cfr](problems.md#cfr)|0.1.2 |__+1__ | | | -|[chainbinomial](problems.md#chainbinomial)|0.1.5 |__+1__ | | | -|[charlatan](problems.md#charlatan)|0.6.1 |__+1__ | |1 | -|[covidcast](problems.md#covidcast)|0.5.2 |__+1__ | |1 __+1__ | -|[cryptoQuotes](problems.md#cryptoquotes)|1.3.2 |__+1__ | |1 | -|[diseasystore](problems.md#diseasystore)|0.2.2 |__+1__ | | | -|[divvy](problems.md#divvy)|1.0.0 |__+1__ | |1 | -|[dsmmR](problems.md#dsmmr)|1.0.5 |__+1__ | | | -|[ecocbo](problems.md#ecocbo)|0.12.0 |__+1__ | | | -|[epiCo](problems.md#epico)|1.0.0 |__+1__ | |1 | -|[ergm](problems.md#ergm)|4.7.5 |1 __+1__ | |1 | -|[ieegio](problems.md#ieegio)|0.0.2 |__+1__ | | | -|[infer](problems.md#infer)|1.0.7 |__+1__ | | | -|[innsight](problems.md#innsight)|0.3.0 |1 | |__+1__ | -|[intergraph](problems.md#intergraph)|2.0-4 |__+1__ | | | -|[JointFPM](problems.md#jointfpm)|1.2.1 |__+1__ | | | -|[linelist](problems.md#linelist)|1.1.4 |__+1__ | | | -|[literanger](problems.md#literanger)|0.1.1 |__+1__ |1 |1 | -|[madrat](problems.md#madrat)|3.6.4 |__+1__ | | | -|[OlinkAnalyze](problems.md#olinkanalyze)|4.0.1 |1 __+1__ | |1 | -|[palaeoSig](problems.md#palaeosig)|2.1-3 |__+1__ | | | -|[posterior](problems.md#posterior)|1.6.0 |1 __+1__ | | | -|[rcausim](problems.md#rcausim)|0.1.1 |__+1__ | | | -|[rcpptimer](problems.md#rcpptimer)|1.2.1 |__+1__ | | | -|[rdecision](problems.md#rdecision)|1.2.1 |1 __+1__ | | | -|[REDCapR](problems.md#redcapr)|1.3.0 |__+1__ | | | -|[rgl](problems.md#rgl)|1.3.12 |__+1__ | |1 | -|[scoringutils](problems.md#scoringutils)|2.0.0 |__+1__ | | | -|[sonicscrewdriver](problems.md#sonicscrewdriver)|0.0.7 |__+1__ | | | -|[StratPal](problems.md#stratpal)|0.2.0 |__+1__ | | | -|[TiPS](problems.md#tips)|1.2.3 | | |1 __+1__ | -|[vines](problems.md#vines)|1.1.5 |__+1__ | | | -|[WeightIt](problems.md#weightit)|1.3.2 |__+1__ | | | -|[xpose](problems.md#xpose)|0.4.18 |__+1__ | | | +## New problems (6) + +|package |version |error |warning |note | +|:-------|:--------|:------|:-------|:----| +|[arrow](problems.md#arrow)|17.0.0.1 |__+1__ | |2 | +|[epiCo](problems.md#epico)|1.0.0 |__+1__ | |1 | +|[ieegio](problems.md#ieegio)|0.0.2 |__+1__ | | | +|[madrat](problems.md#madrat)|3.6.4 |__+1__ | | | +|[vines](problems.md#vines)|1.1.5 |__+1__ | | | +|[xpose](problems.md#xpose)|0.4.18 |__+1__ | | | diff --git a/revdep/cran.md b/revdep/cran.md index aaf4870e6..7ee9f21e1 100644 --- a/revdep/cran.md +++ b/revdep/cran.md @@ -1,275 +1,30 @@ ## revdepcheck results -We checked 8842 reverse dependencies (8831 from CRAN + 11 from Bioconductor), comparing R CMD check results across CRAN and dev versions of this package. +We checked 38 reverse dependencies, comparing R CMD check results across CRAN and dev versions of this package. - * We saw 38 new problems - * We failed to check 146 packages + * We saw 6 new problems + * We failed to check 0 packages Issues with CRAN packages are summarised below. ### New problems (This reports the first line of each new failure) -* admtools - checking tests ... ERROR - -* adproclus - checking tests ... ERROR - * arrow checking tests ... ERROR -* bonsai - checking tests ... ERROR - -* cfr - checking tests ... ERROR - -* chainbinomial - checking tests ... ERROR - -* charlatan - checking tests ... ERROR - -* covidcast - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE - -* cryptoQuotes - checking tests ... ERROR - -* diseasystore - checking tests ... ERROR - -* divvy - checking tests ... ERROR - -* dsmmR - checking tests ... ERROR - -* ecocbo - checking tests ... ERROR - * epiCo checking tests ... ERROR -* ergm - checking tests ... ERROR - * ieegio checking examples ... ERROR -* infer - checking tests ... ERROR - -* innsight - checking installed package size ... NOTE - -* intergraph - checking tests ... ERROR - -* JointFPM - checking tests ... ERROR - -* linelist - checking tests ... ERROR - -* literanger - checking tests ... ERROR - * madrat checking tests ... ERROR -* OlinkAnalyze - checking tests ... ERROR - -* palaeoSig - checking tests ... ERROR - -* posterior - checking tests ... ERROR - -* rcausim - checking tests ... ERROR - -* rcpptimer - checking tests ... ERROR - -* rdecision - checking tests ... ERROR - -* REDCapR - checking tests ... ERROR - -* rgl - checking tests ... ERROR - -* scoringutils - checking tests ... ERROR - -* sonicscrewdriver - checking tests ... ERROR - -* StratPal - checking tests ... ERROR - -* TiPS - checking re-building of vignette outputs ... NOTE - * vines checking tests ... ERROR -* WeightIt - checking tests ... ERROR - * xpose checking tests ... ERROR -### Failed to check - -* adjustedCurves (NA) -* aorsf (NA) -* apollo (NA) -* arealDB (NA) -* assessor (NA) -* atom4R (NA) -* BANAM (NA) -* bayesCT (NA) -* bayesDP (NA) -* BayesFactor (NA) -* bbknnR (NA) -* BCClong (NA) -* BFpack (NA) -* BGGM (NA) -* bmgarch (NA) -* bnnSurvival (NA) -* BSTZINB (NA) -* BuyseTest (NA) -* CACIMAR (NA) -* censored (NA) -* Certara.VPCResults (NA) -* CGPfunctions (NA) -* chipPCR (NA) -* COMBO (NA) -* contsurvplot (NA) -* counterfactuals (NA) -* CRMetrics (NA) -* ctsem (NA) -* dartR.base (NA) -* dataone (NA) -* datapack (NA) -* deeptrafo (NA) -* DepthProc (NA) -* drtmle (NA) -* DWLS (NA) -* easybgm (NA) -* EcoEnsemble (NA) -* ecolottery (NA) -* EdSurvey (NA) -* emplik (NA) -* EpiEstim (NA) -* epizootic (NA) -* erah (NA) -* evolqg (NA) -* ezECM (NA) -* FAIRmaterials (NA) -* FastJM (NA) -* fdaPDE (NA) -* flowr (NA) -* ForecastComb (NA) -* FoReco (NA) -* frechet (NA) -* FREEtree (NA) -* gapfill (NA) -* GeomComb (NA) -* gllvm (NA) -* gpuR (NA) -* hettx (NA) -* Hmsc (NA) -* iNZightPlots (NA) -* iNZightRegression (NA) -* JMH (NA) -* joineRML (NA) -* jsmodule (NA) -* kmc (NA) -* KMunicate (NA) -* Landmarking (NA) -* lavaSearch2 (NA) -* lnmixsurv (NA) -* locpolExpectile (NA) -* loon.shiny (NA) -* loon.tourr (NA) -* lsirm12pl (NA) -* marlod (NA) -* mbsts (NA) -* metajam (NA) -* mHMMbayes (NA) -* midasr (NA) -* miWQS (NA) -* mixAR (NA) -* mlmts (NA) -* mlr (NA) -* modeLLtest (NA) -* multilevelmediation (NA) -* multilevelTools (NA) -* NCA (NA) -* netcmc (NA) -* newIMVC (NA) -* nlpred (NA) -* NMADiagT (NA) -* nse (NA) -* paleopop (NA) -* pammtools (NA) -* params (NA) -* pcvr (NA) -* poems (NA) -* popEpi (NA) -* popstudy (NA) -* powerly (NA) -* pre (NA) -* pscore (NA) -* Publish (NA) -* qris (NA) -* QTOCen (NA) -* quantspec (NA) -* quid (NA) -* rddtools (NA) -* rdflib (NA) -* redland (NA) -* riskRegression (NA) -* rlme (NA) -* robber (NA) -* robmed (NA) -* RQdeltaCT (NA) -* rstanarm (NA) -* scAnnotate (NA) -* SCIntRuler (NA) -* scMappR (NA) -* scperturbR (NA) -* scpi (NA) -* SCRIP (NA) -* SensMap (NA) -* Seurat (NA) -* shinyTempSignal (NA) -* Signac (NA) -* SimplyAgree (NA) -* smoothAPC (NA) -* SNPassoc (NA) -* snplinkage (NA) -* statsr (NA) -* stR (NA) -* survcompare (NA) -* survex (NA) -* survHE (NA) -* SurvMetrics (NA) -* TestAnaAPP (NA) -* tidyEdSurvey (NA) -* tidyseurat (NA) -* tidyvpc (NA) -* tramicp (NA) -* tramvs (NA) -* TriDimRegression (NA) -* TSrepr (NA) -* visa (NA) -* wally (NA) -* zen4R (NA) diff --git a/revdep/failures.md b/revdep/failures.md index f22f2bc89..9a2073633 100644 --- a/revdep/failures.md +++ b/revdep/failures.md @@ -1,10540 +1 @@ -# adjustedCurves - -
- -* Version: 0.11.2 -* GitHub: https://github.com/RobinDenz1/adjustedCurves -* Source code: https://github.com/cran/adjustedCurves -* Date/Publication: 2024-07-29 14:30:02 UTC -* Number of recursive dependencies: 174 - -Run `revdepcheck::cloud_details(, "adjustedCurves")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/adjustedCurves/new/adjustedCurves.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘adjustedCurves/DESCRIPTION’ ... OK -... ---- finished re-building ‘plot_customization.rmd’ - -SUMMARY: processing the following file failed: - ‘introduction.Rmd’ - -Error: Vignette re-building failed. -Execution halted - -* DONE -Status: 2 ERRORs, 1 WARNING, 3 NOTEs - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/adjustedCurves/old/adjustedCurves.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘adjustedCurves/DESCRIPTION’ ... OK -... ---- finished re-building ‘plot_customization.rmd’ - -SUMMARY: processing the following file failed: - ‘introduction.Rmd’ - -Error: Vignette re-building failed. -Execution halted - -* DONE -Status: 2 ERRORs, 1 WARNING, 3 NOTEs - - - - - -``` -# ai - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/ai -* Number of recursive dependencies: 44 - -Run `revdepcheck::cloud_details(, "ai")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# aorsf - -
- -* Version: 0.1.5 -* GitHub: https://github.com/ropensci/aorsf -* Source code: https://github.com/cran/aorsf -* Date/Publication: 2024-05-30 03:40:02 UTC -* Number of recursive dependencies: 184 - -Run `revdepcheck::cloud_details(, "aorsf")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/aorsf/new/aorsf.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘aorsf/DESCRIPTION’ ... OK -... -* checking for unstated dependencies in vignettes ... OK -* checking package vignettes in ‘inst/doc’ ... OK -* checking running R code from vignettes ... OK - ‘aorsf.Rmd’ using ‘UTF-8’... OK - ‘fast.Rmd’ using ‘UTF-8’... OK - ‘oobag.Rmd’ using ‘UTF-8’... OK - ‘pd.Rmd’ using ‘UTF-8’... OK -* checking re-building of vignette outputs ... OK -* DONE -Status: 1 NOTE - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/aorsf/old/aorsf.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘aorsf/DESCRIPTION’ ... OK -... -* checking for unstated dependencies in vignettes ... OK -* checking package vignettes in ‘inst/doc’ ... OK -* checking running R code from vignettes ... OK - ‘aorsf.Rmd’ using ‘UTF-8’... OK - ‘fast.Rmd’ using ‘UTF-8’... OK - ‘oobag.Rmd’ using ‘UTF-8’... OK - ‘pd.Rmd’ using ‘UTF-8’... OK -* checking re-building of vignette outputs ... OK -* DONE -Status: 1 NOTE - - - - - -``` -# apollo - -
- -* Version: 0.3.4 -* GitHub: NA -* Source code: https://github.com/cran/apollo -* Date/Publication: 2024-10-01 21:30:08 UTC -* Number of recursive dependencies: 78 - -Run `revdepcheck::cloud_details(, "apollo")` for more info - -
- -## In both - -* checking whether package ‘apollo’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/apollo/new/apollo.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘apollo’ ... -** package ‘apollo’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I'/usr/local/lib/R/site-library/RcppEigen/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -In file included from /usr/local/lib/R/site-library/RcppEigen/include/Eigen/Core:205, - from /usr/local/lib/R/site-library/RcppEigen/include/Eigen/Dense:1, - from /usr/local/lib/R/site-library/RcppEigen/include/RcppEigenForward.h:28, - from /usr/local/lib/R/site-library/RcppEigen/include/RcppEigen.h:25, -... -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘apollo’ -* removing ‘/tmp/workdir/apollo/new/apollo.Rcheck/apollo’ - - -``` -### CRAN - -``` -* installing *source* package ‘apollo’ ... -** package ‘apollo’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I'/usr/local/lib/R/site-library/RcppEigen/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -In file included from /usr/local/lib/R/site-library/RcppEigen/include/Eigen/Core:205, - from /usr/local/lib/R/site-library/RcppEigen/include/Eigen/Dense:1, - from /usr/local/lib/R/site-library/RcppEigen/include/RcppEigenForward.h:28, - from /usr/local/lib/R/site-library/RcppEigen/include/RcppEigen.h:25, -... -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘apollo’ -* removing ‘/tmp/workdir/apollo/old/apollo.Rcheck/apollo’ - - -``` -# arealDB - -
- -* Version: 0.6.3 -* GitHub: https://github.com/luckinet/arealDB -* Source code: https://github.com/cran/arealDB -* Date/Publication: 2023-07-03 10:00:02 UTC -* Number of recursive dependencies: 109 - -Run `revdepcheck::cloud_details(, "arealDB")` for more info - -
- -## In both - -* checking whether package ‘arealDB’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/arealDB/new/arealDB.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘arealDB’ ... -** package ‘arealDB’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Error in dyn.load(file, DLLpath = DLLpath, ...) : - unable to load shared object '/usr/local/lib/R/site-library/redland/libs/redland.so': - librdf.so.0: cannot open shared object file: No such file or directory -Calls: ... asNamespace -> loadNamespace -> library.dynam -> dyn.load -Execution halted -ERROR: lazy loading failed for package ‘arealDB’ -* removing ‘/tmp/workdir/arealDB/new/arealDB.Rcheck/arealDB’ - - -``` -### CRAN - -``` -* installing *source* package ‘arealDB’ ... -** package ‘arealDB’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Error in dyn.load(file, DLLpath = DLLpath, ...) : - unable to load shared object '/usr/local/lib/R/site-library/redland/libs/redland.so': - librdf.so.0: cannot open shared object file: No such file or directory -Calls: ... asNamespace -> loadNamespace -> library.dynam -> dyn.load -Execution halted -ERROR: lazy loading failed for package ‘arealDB’ -* removing ‘/tmp/workdir/arealDB/old/arealDB.Rcheck/arealDB’ - - -``` -# assessor - -
- -* Version: 1.1.0 -* GitHub: https://github.com/jhlee1408/assessor -* Source code: https://github.com/cran/assessor -* Date/Publication: 2024-04-03 04:23:02 UTC -* Number of recursive dependencies: 106 - -Run `revdepcheck::cloud_details(, "assessor")` for more info - -
- -## In both - -* checking whether package ‘assessor’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/assessor/new/assessor.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘assessor’ ... -** package ‘assessor’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘assessor’ -* removing ‘/tmp/workdir/assessor/new/assessor.Rcheck/assessor’ - - -``` -### CRAN - -``` -* installing *source* package ‘assessor’ ... -** package ‘assessor’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘assessor’ -* removing ‘/tmp/workdir/assessor/old/assessor.Rcheck/assessor’ - - -``` -# atom4R - -
- -* Version: 0.3-3 -* GitHub: https://github.com/eblondel/atom4R -* Source code: https://github.com/cran/atom4R -* Date/Publication: 2022-11-18 14:40:15 UTC -* Number of recursive dependencies: 70 - -Run `revdepcheck::cloud_details(, "atom4R")` for more info - -
- -## In both - -* checking whether package ‘atom4R’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/atom4R/new/atom4R.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘atom4R’ ... -** package ‘atom4R’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Error in dyn.load(file, DLLpath = DLLpath, ...) : - unable to load shared object '/usr/local/lib/R/site-library/redland/libs/redland.so': - librdf.so.0: cannot open shared object file: No such file or directory -Calls: ... asNamespace -> loadNamespace -> library.dynam -> dyn.load -Execution halted -ERROR: lazy loading failed for package ‘atom4R’ -* removing ‘/tmp/workdir/atom4R/new/atom4R.Rcheck/atom4R’ - - -``` -### CRAN - -``` -* installing *source* package ‘atom4R’ ... -** package ‘atom4R’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Error in dyn.load(file, DLLpath = DLLpath, ...) : - unable to load shared object '/usr/local/lib/R/site-library/redland/libs/redland.so': - librdf.so.0: cannot open shared object file: No such file or directory -Calls: ... asNamespace -> loadNamespace -> library.dynam -> dyn.load -Execution halted -ERROR: lazy loading failed for package ‘atom4R’ -* removing ‘/tmp/workdir/atom4R/old/atom4R.Rcheck/atom4R’ - - -``` -# BANAM - -
- -* Version: 0.2.1 -* GitHub: NA -* Source code: https://github.com/cran/BANAM -* Date/Publication: 2024-06-20 10:30:02 UTC -* Number of recursive dependencies: 95 - -Run `revdepcheck::cloud_details(, "BANAM")` for more info - -
- -## In both - -* checking whether package ‘BANAM’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/BANAM/new/BANAM.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘BANAM’ ... -** package ‘BANAM’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘BFpack’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Execution halted -ERROR: lazy loading failed for package ‘BANAM’ -* removing ‘/tmp/workdir/BANAM/new/BANAM.Rcheck/BANAM’ - - -``` -### CRAN - -``` -* installing *source* package ‘BANAM’ ... -** package ‘BANAM’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘BFpack’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Execution halted -ERROR: lazy loading failed for package ‘BANAM’ -* removing ‘/tmp/workdir/BANAM/old/BANAM.Rcheck/BANAM’ - - -``` -# bayesCT - -
- -* Version: 0.99.3 -* GitHub: https://github.com/thevaachandereng/bayesCT -* Source code: https://github.com/cran/bayesCT -* Date/Publication: 2020-07-01 09:30:02 UTC -* Number of recursive dependencies: 121 - -Run `revdepcheck::cloud_details(, "bayesCT")` for more info - -
- -## In both - -* checking whether package ‘bayesCT’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/bayesCT/new/bayesCT.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘bayesCT’ ... -** package ‘bayesCT’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘bayesCT’ -* removing ‘/tmp/workdir/bayesCT/new/bayesCT.Rcheck/bayesCT’ - - -``` -### CRAN - -``` -* installing *source* package ‘bayesCT’ ... -** package ‘bayesCT’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘bayesCT’ -* removing ‘/tmp/workdir/bayesCT/old/bayesCT.Rcheck/bayesCT’ - - -``` -# bayesDP - -
- -* Version: 1.3.6 -* GitHub: https://github.com/graemeleehickey/bayesDP -* Source code: https://github.com/cran/bayesDP -* Date/Publication: 2022-01-30 22:20:02 UTC -* Number of recursive dependencies: 79 - -Run `revdepcheck::cloud_details(, "bayesDP")` for more info - -
- -## In both - -* checking whether package ‘bayesDP’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/bayesDP/new/bayesDP.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘bayesDP’ ... -** package ‘bayesDP’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c bdplm.cpp -o bdplm.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c ppexp.cpp -o ppexp.o -g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o bayesDP.so RcppExports.o bdplm.o ppexp.o -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR -installing to /tmp/workdir/bayesDP/new/bayesDP.Rcheck/00LOCK-bayesDP/00new/bayesDP/libs -** R -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘bayesDP’ -* removing ‘/tmp/workdir/bayesDP/new/bayesDP.Rcheck/bayesDP’ - - -``` -### CRAN - -``` -* installing *source* package ‘bayesDP’ ... -** package ‘bayesDP’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c bdplm.cpp -o bdplm.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c ppexp.cpp -o ppexp.o -g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o bayesDP.so RcppExports.o bdplm.o ppexp.o -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR -installing to /tmp/workdir/bayesDP/old/bayesDP.Rcheck/00LOCK-bayesDP/00new/bayesDP/libs -** R -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘bayesDP’ -* removing ‘/tmp/workdir/bayesDP/old/bayesDP.Rcheck/bayesDP’ - - -``` -# BayesFactor - -
- -* Version: 0.9.12-4.7 -* GitHub: https://github.com/richarddmorey/BayesFactor -* Source code: https://github.com/cran/BayesFactor -* Date/Publication: 2024-01-24 15:02:50 UTC -* Number of recursive dependencies: 72 - -Run `revdepcheck::cloud_details(, "BayesFactor")` for more info - -
- -## In both - -* checking whether package ‘BayesFactor’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/BayesFactor/new/BayesFactor.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘BayesFactor’ ... -** package ‘BayesFactor’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -c RcppCallback.cpp -o RcppCallback.o -In file included from /usr/local/lib/R/site-library/RcppEigen/include/Eigen/Core:205, - from /usr/local/lib/R/site-library/RcppEigen/include/Eigen/Dense:1, - from /usr/local/lib/R/site-library/RcppEigen/include/RcppEigenForward.h:28, - from /usr/local/lib/R/site-library/RcppEigen/include/RcppEigen.h:25, -... -** R -** data -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘BayesFactor’ -* removing ‘/tmp/workdir/BayesFactor/new/BayesFactor.Rcheck/BayesFactor’ - - -``` -### CRAN - -``` -* installing *source* package ‘BayesFactor’ ... -** package ‘BayesFactor’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -c RcppCallback.cpp -o RcppCallback.o -In file included from /usr/local/lib/R/site-library/RcppEigen/include/Eigen/Core:205, - from /usr/local/lib/R/site-library/RcppEigen/include/Eigen/Dense:1, - from /usr/local/lib/R/site-library/RcppEigen/include/RcppEigenForward.h:28, - from /usr/local/lib/R/site-library/RcppEigen/include/RcppEigen.h:25, -... -** R -** data -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘BayesFactor’ -* removing ‘/tmp/workdir/BayesFactor/old/BayesFactor.Rcheck/BayesFactor’ - - -``` -# bbknnR - -
- -* Version: 1.1.1 -* GitHub: https://github.com/ycli1995/bbknnR -* Source code: https://github.com/cran/bbknnR -* Date/Publication: 2024-02-13 10:20:03 UTC -* Number of recursive dependencies: 162 - -Run `revdepcheck::cloud_details(, "bbknnR")` for more info - -
- -## In both - -* checking whether package ‘bbknnR’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/bbknnR/new/bbknnR.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘bbknnR’ ... -** package ‘bbknnR’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c data_manipulation.cpp -o data_manipulation.o -g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o bbknnR.so RcppExports.o data_manipulation.o -L/opt/R/4.3.1/lib/R/lib -lR -installing to /tmp/workdir/bbknnR/new/bbknnR.Rcheck/00LOCK-bbknnR/00new/bbknnR/libs -** R -... -Warning: namespace ‘Seurat’ is not available and has been replaced -by .GlobalEnv when processing object ‘panc8_small’ -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.4 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘bbknnR’ -* removing ‘/tmp/workdir/bbknnR/new/bbknnR.Rcheck/bbknnR’ - - -``` -### CRAN - -``` -* installing *source* package ‘bbknnR’ ... -** package ‘bbknnR’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c data_manipulation.cpp -o data_manipulation.o -g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o bbknnR.so RcppExports.o data_manipulation.o -L/opt/R/4.3.1/lib/R/lib -lR -installing to /tmp/workdir/bbknnR/old/bbknnR.Rcheck/00LOCK-bbknnR/00new/bbknnR/libs -** R -... -Warning: namespace ‘Seurat’ is not available and has been replaced -by .GlobalEnv when processing object ‘panc8_small’ -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.4 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘bbknnR’ -* removing ‘/tmp/workdir/bbknnR/old/bbknnR.Rcheck/bbknnR’ - - -``` -# BCClong - -
- -* Version: 1.0.3 -* GitHub: NA -* Source code: https://github.com/cran/BCClong -* Date/Publication: 2024-06-24 00:00:02 UTC -* Number of recursive dependencies: 145 - -Run `revdepcheck::cloud_details(, "BCClong")` for more info - -
- -## In both - -* checking whether package ‘BCClong’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/BCClong/new/BCClong.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘BCClong’ ... -** package ‘BCClong’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c BCC.cpp -o BCC.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c Likelihood.cpp -o Likelihood.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c c_which.cpp -o c_which.o -g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o BCClong.so BCC.o Likelihood.o RcppExports.o c_which.o -fopenmp -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR -... -** R -** data -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘BCClong’ -* removing ‘/tmp/workdir/BCClong/new/BCClong.Rcheck/BCClong’ - - -``` -### CRAN - -``` -* installing *source* package ‘BCClong’ ... -** package ‘BCClong’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c BCC.cpp -o BCC.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c Likelihood.cpp -o Likelihood.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c c_which.cpp -o c_which.o -g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o BCClong.so BCC.o Likelihood.o RcppExports.o c_which.o -fopenmp -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR -... -** R -** data -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘BCClong’ -* removing ‘/tmp/workdir/BCClong/old/BCClong.Rcheck/BCClong’ - - -``` -# BFpack - -
- -* Version: 1.3.0 -* GitHub: https://github.com/jomulder/BFpack -* Source code: https://github.com/cran/BFpack -* Date/Publication: 2024-06-19 10:50:02 UTC -* Number of recursive dependencies: 105 - -Run `revdepcheck::cloud_details(, "BFpack")` for more info - -
- -## In both - -* checking whether package ‘BFpack’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/BFpack/new/BFpack.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘BFpack’ ... -** package ‘BFpack’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C compiler: ‘gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -using Fortran compiler: ‘GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c BFpack_init.c -o BFpack_init.o -gfortran -fpic -g -O2 -c bct_mixedordinal.f90 -o bct_mixedordinal.o -gfortran -fpic -g -O2 -c bct_prior.f90 -o bct_prior.o -gcc -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o BFpack.so BFpack_init.o bct_mixedordinal.o bct_prior.o -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR -... -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘BFpack’ -* removing ‘/tmp/workdir/BFpack/new/BFpack.Rcheck/BFpack’ - - -``` -### CRAN - -``` -* installing *source* package ‘BFpack’ ... -** package ‘BFpack’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C compiler: ‘gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -using Fortran compiler: ‘GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c BFpack_init.c -o BFpack_init.o -gfortran -fpic -g -O2 -c bct_mixedordinal.f90 -o bct_mixedordinal.o -gfortran -fpic -g -O2 -c bct_prior.f90 -o bct_prior.o -gcc -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o BFpack.so BFpack_init.o bct_mixedordinal.o bct_prior.o -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR -... -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘BFpack’ -* removing ‘/tmp/workdir/BFpack/old/BFpack.Rcheck/BFpack’ - - -``` -# BGGM - -
- -* Version: 2.1.3 -* GitHub: https://github.com/donaldRwilliams/BGGM -* Source code: https://github.com/cran/BGGM -* Date/Publication: 2024-07-05 20:30:02 UTC -* Number of recursive dependencies: 194 - -Run `revdepcheck::cloud_details(, "BGGM")` for more info - -
- -## In both - -* checking whether package ‘BGGM’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/BGGM/new/BGGM.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘BGGM’ ... -** package ‘BGGM’ successfully unpacked and MD5 sums checked -** using staged installation -checking whether the C++ compiler works... yes -checking for C++ compiler default output file name... a.out -checking for suffix of executables... -checking whether we are cross compiling... no -checking for suffix of object files... o -checking whether we are using the GNU C++ compiler... yes -checking whether g++ -std=gnu++17 accepts -g... yes -... -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘BGGM’ -* removing ‘/tmp/workdir/BGGM/new/BGGM.Rcheck/BGGM’ - - -``` -### CRAN - -``` -* installing *source* package ‘BGGM’ ... -** package ‘BGGM’ successfully unpacked and MD5 sums checked -** using staged installation -checking whether the C++ compiler works... yes -checking for C++ compiler default output file name... a.out -checking for suffix of executables... -checking whether we are cross compiling... no -checking for suffix of object files... o -checking whether we are using the GNU C++ compiler... yes -checking whether g++ -std=gnu++17 accepts -g... yes -... -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘BGGM’ -* removing ‘/tmp/workdir/BGGM/old/BGGM.Rcheck/BGGM’ - - -``` -# bmgarch - -
- -* Version: 2.0.0 -* GitHub: https://github.com/ph-rast/bmgarch -* Source code: https://github.com/cran/bmgarch -* Date/Publication: 2023-09-12 00:40:02 UTC -* Number of recursive dependencies: 81 - -Run `revdepcheck::cloud_details(, "bmgarch")` for more info - -
- -## Newly broken - -* checking whether package ‘bmgarch’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/bmgarch/new/bmgarch.Rcheck/00install.out’ for details. - ``` - -## Newly fixed - -* checking installed package size ... NOTE - ``` - installed size is 304.9Mb - sub-directories of 1Mb or more: - libs 304.1Mb - ``` - -* checking for GNU extensions in Makefiles ... NOTE - ``` - GNU make is a SystemRequirements. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘bmgarch’ ... -** package ‘bmgarch’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -using C++17 - - -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I"../inst/include" -I"/usr/local/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/usr/local/lib/R/site-library/BH/include' -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppParallel/include' -I'/usr/local/lib/R/site-library/RcppEigen/include' -I'/usr/local/lib/R/site-library/rstan/include' -I'/usr/local/lib/R/site-library/StanHeaders/include' -I/usr/local/include -I'/usr/local/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -In file included from /usr/local/lib/R/site-library/RcppEigen/include/Eigen/Core:205, -... -/usr/local/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:0: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_DCCMGARCH_namespace::model_DCCMGARCH; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’ -/usr/local/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:0: required from here -/usr/local/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] - 654 | return internal::first_aligned::alignment),Derived>(m); - | ^~~~~~~~~ -g++: fatal error: Killed signal terminated program cc1plus -compilation terminated. -make: *** [/opt/R/4.3.1/lib/R/etc/Makeconf:198: stanExports_DCCMGARCH.o] Error 1 -ERROR: compilation failed for package ‘bmgarch’ -* removing ‘/tmp/workdir/bmgarch/new/bmgarch.Rcheck/bmgarch’ - - -``` -### CRAN - -``` -* installing *source* package ‘bmgarch’ ... -** package ‘bmgarch’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -using C++17 - - -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I"../inst/include" -I"/usr/local/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/usr/local/lib/R/site-library/BH/include' -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppParallel/include' -I'/usr/local/lib/R/site-library/RcppEigen/include' -I'/usr/local/lib/R/site-library/rstan/include' -I'/usr/local/lib/R/site-library/StanHeaders/include' -I/usr/local/include -I'/usr/local/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -In file included from /usr/local/lib/R/site-library/RcppEigen/include/Eigen/Core:205, -... -** inst -** byte-compile and prepare package for lazy loading -** help -*** installing help indices -** building package indices -** testing if installed package can be loaded from temporary location -** checking absolute paths in shared objects and dynamic libraries -** testing if installed package can be loaded from final location -** testing if installed package keeps a record of temporary installation path -* DONE (bmgarch) - - -``` -# bnnSurvival - -
- -* Version: 0.1.5 -* GitHub: NA -* Source code: https://github.com/cran/bnnSurvival -* Date/Publication: 2017-05-10 15:37:49 UTC -* Number of recursive dependencies: 117 - -Run `revdepcheck::cloud_details(, "bnnSurvival")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/bnnSurvival/new/bnnSurvival.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘bnnSurvival/DESCRIPTION’ ... OK -... - 5. └─base::loadNamespace(x) - 6. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL) - 7. └─base (local) withOneRestart(expr, restarts[[1L]]) - 8. └─base (local) doWithOneRestart(return(expr), restart) - - [ FAIL 1 | WARN 0 | SKIP 0 | PASS 5 ] - Error: Test failures - Execution halted -* DONE -Status: 1 ERROR - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/bnnSurvival/old/bnnSurvival.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘bnnSurvival/DESCRIPTION’ ... OK -... - 5. └─base::loadNamespace(x) - 6. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL) - 7. └─base (local) withOneRestart(expr, restarts[[1L]]) - 8. └─base (local) doWithOneRestart(return(expr), restart) - - [ FAIL 1 | WARN 0 | SKIP 0 | PASS 5 ] - Error: Test failures - Execution halted -* DONE -Status: 1 ERROR - - - - - -``` -# BSTZINB - -
- -* Version: 1.0.1 -* GitHub: https://github.com/SumanM47/BSTZINB -* Source code: https://github.com/cran/BSTZINB -* Date/Publication: 2024-10-31 22:50:02 UTC -* Number of recursive dependencies: 110 - -Run `revdepcheck::cloud_details(, "BSTZINB")` for more info - -
- -## In both - -* checking whether package ‘BSTZINB’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/BSTZINB/new/BSTZINB.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘BSTZINB’ ... -** package ‘BSTZINB’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘BSTZINB’ -* removing ‘/tmp/workdir/BSTZINB/new/BSTZINB.Rcheck/BSTZINB’ - - -``` -### CRAN - -``` -* installing *source* package ‘BSTZINB’ ... -** package ‘BSTZINB’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘BSTZINB’ -* removing ‘/tmp/workdir/BSTZINB/old/BSTZINB.Rcheck/BSTZINB’ - - -``` -# BuyseTest - -
- -* Version: 3.0.5 -* GitHub: https://github.com/bozenne/BuyseTest -* Source code: https://github.com/cran/BuyseTest -* Date/Publication: 2024-10-13 21:40:02 UTC -* Number of recursive dependencies: 132 - -Run `revdepcheck::cloud_details(, "BuyseTest")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/BuyseTest/new/BuyseTest.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘BuyseTest/DESCRIPTION’ ... OK -... -* this is package ‘BuyseTest’ version ‘3.0.5’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘riskRegression’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/BuyseTest/old/BuyseTest.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘BuyseTest/DESCRIPTION’ ... OK -... -* this is package ‘BuyseTest’ version ‘3.0.5’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘riskRegression’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -# CACIMAR - -
- -* Version: 1.0.0 -* GitHub: https://github.com/jiang-junyao/CACIMAR -* Source code: https://github.com/cran/CACIMAR -* Date/Publication: 2022-05-18 08:20:02 UTC -* Number of recursive dependencies: 161 - -Run `revdepcheck::cloud_details(, "CACIMAR")` for more info - -
- -## In both - -* checking whether package ‘CACIMAR’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/CACIMAR/new/CACIMAR.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘CACIMAR’ ... -** package ‘CACIMAR’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘SeuratObject’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - namespace ‘Matrix’ 1.5-4.1 is being loaded, but >= 1.6.4 is required -Execution halted -ERROR: lazy loading failed for package ‘CACIMAR’ -* removing ‘/tmp/workdir/CACIMAR/new/CACIMAR.Rcheck/CACIMAR’ - - -``` -### CRAN - -``` -* installing *source* package ‘CACIMAR’ ... -** package ‘CACIMAR’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘SeuratObject’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - namespace ‘Matrix’ 1.5-4.1 is being loaded, but >= 1.6.4 is required -Execution halted -ERROR: lazy loading failed for package ‘CACIMAR’ -* removing ‘/tmp/workdir/CACIMAR/old/CACIMAR.Rcheck/CACIMAR’ - - -``` -# censored - -
- -* Version: 0.3.2 -* GitHub: https://github.com/tidymodels/censored -* Source code: https://github.com/cran/censored -* Date/Publication: 2024-06-11 18:10:02 UTC -* Number of recursive dependencies: 163 - -Run `revdepcheck::cloud_details(, "censored")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/censored/new/censored.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘censored/DESCRIPTION’ ... OK -... -* this is package ‘censored’ version ‘0.3.2’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required and available but unsuitable version: ‘survival’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/censored/old/censored.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘censored/DESCRIPTION’ ... OK -... -* this is package ‘censored’ version ‘0.3.2’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required and available but unsuitable version: ‘survival’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -# Certara.VPCResults - -
- -* Version: 3.0.1 -* GitHub: NA -* Source code: https://github.com/cran/Certara.VPCResults -* Date/Publication: 2024-10-10 18:50:06 UTC -* Number of recursive dependencies: 141 - -Run `revdepcheck::cloud_details(, "Certara.VPCResults")` for more info - -
- -## In both - -* checking whether package ‘Certara.VPCResults’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/Certara.VPCResults/new/Certara.VPCResults.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘Certara.VPCResults’ ... -** package ‘Certara.VPCResults’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘Certara.VPCResults’ -* removing ‘/tmp/workdir/Certara.VPCResults/new/Certara.VPCResults.Rcheck/Certara.VPCResults’ - - -``` -### CRAN - -``` -* installing *source* package ‘Certara.VPCResults’ ... -** package ‘Certara.VPCResults’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘Certara.VPCResults’ -* removing ‘/tmp/workdir/Certara.VPCResults/old/Certara.VPCResults.Rcheck/Certara.VPCResults’ - - -``` -# CGPfunctions - -
- -* Version: 0.6.3 -* GitHub: https://github.com/ibecav/CGPfunctions -* Source code: https://github.com/cran/CGPfunctions -* Date/Publication: 2020-11-12 14:50:09 UTC -* Number of recursive dependencies: 148 - -Run `revdepcheck::cloud_details(, "CGPfunctions")` for more info - -
- -## In both - -* checking whether package ‘CGPfunctions’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/CGPfunctions/new/CGPfunctions.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘CGPfunctions’ ... -** package ‘CGPfunctions’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘CGPfunctions’ -* removing ‘/tmp/workdir/CGPfunctions/new/CGPfunctions.Rcheck/CGPfunctions’ - - -``` -### CRAN - -``` -* installing *source* package ‘CGPfunctions’ ... -** package ‘CGPfunctions’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘CGPfunctions’ -* removing ‘/tmp/workdir/CGPfunctions/old/CGPfunctions.Rcheck/CGPfunctions’ - - -``` -# chipPCR - -
- -* Version: 1.0-2 -* GitHub: https://github.com/PCRuniversum/chipPCR -* Source code: https://github.com/cran/chipPCR -* Date/Publication: 2021-03-05 07:50:03 UTC -* Number of recursive dependencies: 141 - -Run `revdepcheck::cloud_details(, "chipPCR")` for more info - -
- -## In both - -* checking whether package ‘chipPCR’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/chipPCR/new/chipPCR.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘chipPCR’ ... -** package ‘chipPCR’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘chipPCR’ -* removing ‘/tmp/workdir/chipPCR/new/chipPCR.Rcheck/chipPCR’ - - -``` -### CRAN - -``` -* installing *source* package ‘chipPCR’ ... -** package ‘chipPCR’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘chipPCR’ -* removing ‘/tmp/workdir/chipPCR/old/chipPCR.Rcheck/chipPCR’ - - -``` -# cmmr - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/cmmr -* Number of recursive dependencies: 36 - -Run `revdepcheck::cloud_details(, "cmmr")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# COMBO - -
- -* Version: 1.2.0 -* GitHub: NA -* Source code: https://github.com/cran/COMBO -* Date/Publication: 2024-10-30 15:50:02 UTC -* Number of recursive dependencies: 122 - -Run `revdepcheck::cloud_details(, "COMBO")` for more info - -
- -## In both - -* checking whether package ‘COMBO’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/COMBO/new/COMBO.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘COMBO’ ... -** package ‘COMBO’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘COMBO’ -* removing ‘/tmp/workdir/COMBO/new/COMBO.Rcheck/COMBO’ - - -``` -### CRAN - -``` -* installing *source* package ‘COMBO’ ... -** package ‘COMBO’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘COMBO’ -* removing ‘/tmp/workdir/COMBO/old/COMBO.Rcheck/COMBO’ - - -``` -# contsurvplot - -
- -* Version: 0.2.1 -* GitHub: https://github.com/RobinDenz1/contsurvplot -* Source code: https://github.com/cran/contsurvplot -* Date/Publication: 2023-08-15 08:00:03 UTC -* Number of recursive dependencies: 156 - -Run `revdepcheck::cloud_details(, "contsurvplot")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/contsurvplot/new/contsurvplot.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘contsurvplot/DESCRIPTION’ ... OK -... -* this is package ‘contsurvplot’ version ‘0.2.1’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘riskRegression’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/contsurvplot/old/contsurvplot.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘contsurvplot/DESCRIPTION’ ... OK -... -* this is package ‘contsurvplot’ version ‘0.2.1’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘riskRegression’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -# counterfactuals - -
- -* Version: 0.1.6 -* GitHub: https://github.com/dandls/counterfactuals -* Source code: https://github.com/cran/counterfactuals -* Date/Publication: 2024-10-17 12:00:06 UTC -* Number of recursive dependencies: 217 - -Run `revdepcheck::cloud_details(, "counterfactuals")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/counterfactuals/new/counterfactuals.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘counterfactuals/DESCRIPTION’ ... OK -... -* checking examples ... OK -* checking for unstated dependencies in vignettes ... OK -* checking package vignettes in ‘inst/doc’ ... OK -* checking running R code from vignettes ... NONE - ‘how-to-add-new-cf-methods.html.asis’ using ‘UTF-8’... OK - ‘introduction.html.asis’ using ‘UTF-8’... OK - ‘other_models.html.asis’ using ‘UTF-8’... OK -* checking re-building of vignette outputs ... OK -* DONE -Status: 1 NOTE - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/counterfactuals/old/counterfactuals.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘counterfactuals/DESCRIPTION’ ... OK -... -* checking examples ... OK -* checking for unstated dependencies in vignettes ... OK -* checking package vignettes in ‘inst/doc’ ... OK -* checking running R code from vignettes ... NONE - ‘how-to-add-new-cf-methods.html.asis’ using ‘UTF-8’... OK - ‘introduction.html.asis’ using ‘UTF-8’... OK - ‘other_models.html.asis’ using ‘UTF-8’... OK -* checking re-building of vignette outputs ... OK -* DONE -Status: 1 NOTE - - - - - -``` -# CRMetrics - -
- -* Version: 0.3.0 -* GitHub: https://github.com/khodosevichlab/CRMetrics -* Source code: https://github.com/cran/CRMetrics -* Date/Publication: 2023-09-01 09:00:06 UTC -* Number of recursive dependencies: 239 - -Run `revdepcheck::cloud_details(, "CRMetrics")` for more info - -
- -## In both - -* checking whether package ‘CRMetrics’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/CRMetrics/new/CRMetrics.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘CRMetrics’ ... -** package ‘CRMetrics’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘CRMetrics’ -* removing ‘/tmp/workdir/CRMetrics/new/CRMetrics.Rcheck/CRMetrics’ - - -``` -### CRAN - -``` -* installing *source* package ‘CRMetrics’ ... -** package ‘CRMetrics’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘CRMetrics’ -* removing ‘/tmp/workdir/CRMetrics/old/CRMetrics.Rcheck/CRMetrics’ - - -``` -# ctsem - -
- -* Version: 3.10.1 -* GitHub: https://github.com/cdriveraus/ctsem -* Source code: https://github.com/cran/ctsem -* Date/Publication: 2024-08-19 14:40:06 UTC -* Number of recursive dependencies: 157 - -Run `revdepcheck::cloud_details(, "ctsem")` for more info - -
- -## In both - -* checking whether package ‘ctsem’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/ctsem/new/ctsem.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘ctsem’ ... -** package ‘ctsem’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -using C++17 - - -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I"../inst/include" -I"/usr/local/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/usr/local/lib/R/site-library/BH/include' -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppEigen/include' -I'/usr/local/lib/R/site-library/RcppParallel/include' -I'/usr/local/lib/R/site-library/rstan/include' -I'/usr/local/lib/R/site-library/StanHeaders/include' -I/usr/local/include -I'/usr/local/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -In file included from /usr/local/lib/R/site-library/RcppEigen/include/Eigen/Core:205, -... -/usr/local/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:0: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_ctsm_namespace::model_ctsm; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’ -/usr/local/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:0: required from here -/usr/local/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] - 654 | return internal::first_aligned::alignment),Derived>(m); - | ^~~~~~~~~ -g++: fatal error: Killed signal terminated program cc1plus -compilation terminated. -make: *** [/opt/R/4.3.1/lib/R/etc/Makeconf:198: stanExports_ctsm.o] Error 1 -ERROR: compilation failed for package ‘ctsem’ -* removing ‘/tmp/workdir/ctsem/new/ctsem.Rcheck/ctsem’ - - -``` -### CRAN - -``` -* installing *source* package ‘ctsem’ ... -** package ‘ctsem’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -using C++17 - - -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I"../inst/include" -I"/usr/local/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/usr/local/lib/R/site-library/BH/include' -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppEigen/include' -I'/usr/local/lib/R/site-library/RcppParallel/include' -I'/usr/local/lib/R/site-library/rstan/include' -I'/usr/local/lib/R/site-library/StanHeaders/include' -I/usr/local/include -I'/usr/local/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -In file included from /usr/local/lib/R/site-library/RcppEigen/include/Eigen/Core:205, -... -/usr/local/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:0: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_ctsm_namespace::model_ctsm; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’ -/usr/local/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:0: required from here -/usr/local/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] - 654 | return internal::first_aligned::alignment),Derived>(m); - | ^~~~~~~~~ -g++: fatal error: Killed signal terminated program cc1plus -compilation terminated. -make: *** [/opt/R/4.3.1/lib/R/etc/Makeconf:198: stanExports_ctsm.o] Error 1 -ERROR: compilation failed for package ‘ctsem’ -* removing ‘/tmp/workdir/ctsem/old/ctsem.Rcheck/ctsem’ - - -``` -# dartR.base - -
- -* Version: 0.98 -* GitHub: NA -* Source code: https://github.com/cran/dartR.base -* Date/Publication: 2024-09-19 13:20:02 UTC -* Number of recursive dependencies: 285 - -Run `revdepcheck::cloud_details(, "dartR.base")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/dartR.base/new/dartR.base.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘dartR.base/DESCRIPTION’ ... OK -... -* this is package ‘dartR.base’ version ‘0.98’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘SNPassoc’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/dartR.base/old/dartR.base.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘dartR.base/DESCRIPTION’ ... OK -... -* this is package ‘dartR.base’ version ‘0.98’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘SNPassoc’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -# dataone - -
- -* Version: 2.2.2 -* GitHub: https://github.com/DataONEorg/rdataone -* Source code: https://github.com/cran/dataone -* Date/Publication: 2022-06-10 19:30:02 UTC -* Number of recursive dependencies: 63 - -Run `revdepcheck::cloud_details(, "dataone")` for more info - -
- -## In both - -* checking whether package ‘dataone’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/dataone/new/dataone.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘dataone’ ... -** package ‘dataone’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Error in dyn.load(file, DLLpath = DLLpath, ...) : - unable to load shared object '/usr/local/lib/R/site-library/redland/libs/redland.so': - librdf.so.0: cannot open shared object file: No such file or directory -Calls: ... namespaceImport -> loadNamespace -> library.dynam -> dyn.load -Execution halted -ERROR: lazy loading failed for package ‘dataone’ -* removing ‘/tmp/workdir/dataone/new/dataone.Rcheck/dataone’ - - -``` -### CRAN - -``` -* installing *source* package ‘dataone’ ... -** package ‘dataone’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Error in dyn.load(file, DLLpath = DLLpath, ...) : - unable to load shared object '/usr/local/lib/R/site-library/redland/libs/redland.so': - librdf.so.0: cannot open shared object file: No such file or directory -Calls: ... namespaceImport -> loadNamespace -> library.dynam -> dyn.load -Execution halted -ERROR: lazy loading failed for package ‘dataone’ -* removing ‘/tmp/workdir/dataone/old/dataone.Rcheck/dataone’ - - -``` -# datapack - -
- -* Version: 1.4.1 -* GitHub: https://github.com/ropensci/datapack -* Source code: https://github.com/cran/datapack -* Date/Publication: 2022-06-10 19:40:01 UTC -* Number of recursive dependencies: 63 - -Run `revdepcheck::cloud_details(, "datapack")` for more info - -
- -## In both - -* checking whether package ‘datapack’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/datapack/new/datapack.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘datapack’ ... -** package ‘datapack’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Error in dyn.load(file, DLLpath = DLLpath, ...) : - unable to load shared object '/usr/local/lib/R/site-library/redland/libs/redland.so': - librdf.so.0: cannot open shared object file: No such file or directory -Calls: ... namespaceImport -> loadNamespace -> library.dynam -> dyn.load -Execution halted -ERROR: lazy loading failed for package ‘datapack’ -* removing ‘/tmp/workdir/datapack/new/datapack.Rcheck/datapack’ - - -``` -### CRAN - -``` -* installing *source* package ‘datapack’ ... -** package ‘datapack’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Error in dyn.load(file, DLLpath = DLLpath, ...) : - unable to load shared object '/usr/local/lib/R/site-library/redland/libs/redland.so': - librdf.so.0: cannot open shared object file: No such file or directory -Calls: ... namespaceImport -> loadNamespace -> library.dynam -> dyn.load -Execution halted -ERROR: lazy loading failed for package ‘datapack’ -* removing ‘/tmp/workdir/datapack/old/datapack.Rcheck/datapack’ - - -``` -# deeptrafo - -
- -* Version: 0.1-1 -* GitHub: NA -* Source code: https://github.com/cran/deeptrafo -* Date/Publication: 2022-11-22 09:50:02 UTC -* Number of recursive dependencies: 95 - -Run `revdepcheck::cloud_details(, "deeptrafo")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/deeptrafo/new/deeptrafo.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘deeptrafo/DESCRIPTION’ ... OK -... -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘mlt’ - -Packages suggested but not available for checking: 'tram', 'cotram' - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/deeptrafo/old/deeptrafo.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘deeptrafo/DESCRIPTION’ ... OK -... -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘mlt’ - -Packages suggested but not available for checking: 'tram', 'cotram' - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -# DepthProc - -
- -* Version: 2.1.5 -* GitHub: https://github.com/zzawadz/DepthProc -* Source code: https://github.com/cran/DepthProc -* Date/Publication: 2022-02-03 20:30:02 UTC -* Number of recursive dependencies: 133 - -Run `revdepcheck::cloud_details(, "DepthProc")` for more info - -
- -## In both - -* checking whether package ‘DepthProc’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/DepthProc/new/DepthProc.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘DepthProc’ ... -** package ‘DepthProc’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -using C++11 -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c Depth.cpp -o Depth.o -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c LocationEstimators.cpp -o LocationEstimators.o -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c LocationScaleDepth.cpp -o LocationScaleDepth.o -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c LocationScaleDepthCPP.cpp -o LocationScaleDepthCPP.o -... -installing to /tmp/workdir/DepthProc/new/DepthProc.Rcheck/00LOCK-DepthProc/00new/DepthProc/libs -** R -** data -** inst -** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘np’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Execution halted -ERROR: lazy loading failed for package ‘DepthProc’ -* removing ‘/tmp/workdir/DepthProc/new/DepthProc.Rcheck/DepthProc’ - - -``` -### CRAN - -``` -* installing *source* package ‘DepthProc’ ... -** package ‘DepthProc’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -using C++11 -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c Depth.cpp -o Depth.o -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c LocationEstimators.cpp -o LocationEstimators.o -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c LocationScaleDepth.cpp -o LocationScaleDepth.o -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c LocationScaleDepthCPP.cpp -o LocationScaleDepthCPP.o -... -installing to /tmp/workdir/DepthProc/old/DepthProc.Rcheck/00LOCK-DepthProc/00new/DepthProc/libs -** R -** data -** inst -** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘np’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Execution halted -ERROR: lazy loading failed for package ‘DepthProc’ -* removing ‘/tmp/workdir/DepthProc/old/DepthProc.Rcheck/DepthProc’ - - -``` -# dibble - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/dibble -* Number of recursive dependencies: 51 - -Run `revdepcheck::cloud_details(, "dibble")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# drtmle - -
- -* Version: 1.1.2 -* GitHub: https://github.com/benkeser/drtmle -* Source code: https://github.com/cran/drtmle -* Date/Publication: 2023-01-05 19:50:02 UTC -* Number of recursive dependencies: 74 - -Run `revdepcheck::cloud_details(, "drtmle")` for more info - -
- -## In both - -* checking whether package ‘drtmle’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/drtmle/new/drtmle.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘drtmle’ ... -** package ‘drtmle’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘drtmle’ -* removing ‘/tmp/workdir/drtmle/new/drtmle.Rcheck/drtmle’ - - -``` -### CRAN - -``` -* installing *source* package ‘drtmle’ ... -** package ‘drtmle’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘drtmle’ -* removing ‘/tmp/workdir/drtmle/old/drtmle.Rcheck/drtmle’ - - -``` -# DWLS - -
- -* Version: 0.1.0 -* GitHub: https://github.com/sistia01/DWLS -* Source code: https://github.com/cran/DWLS -* Date/Publication: 2022-05-24 09:20:01 UTC -* Number of recursive dependencies: 183 - -Run `revdepcheck::cloud_details(, "DWLS")` for more info - -
- -## In both - -* checking whether package ‘DWLS’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/DWLS/new/DWLS.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘DWLS’ ... -** package ‘DWLS’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.4 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘DWLS’ -* removing ‘/tmp/workdir/DWLS/new/DWLS.Rcheck/DWLS’ - - -``` -### CRAN - -``` -* installing *source* package ‘DWLS’ ... -** package ‘DWLS’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.4 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘DWLS’ -* removing ‘/tmp/workdir/DWLS/old/DWLS.Rcheck/DWLS’ - - -``` -# easybgm - -
- -* Version: 0.2.1 -* GitHub: https://github.com/KarolineHuth/easybgm -* Source code: https://github.com/cran/easybgm -* Date/Publication: 2024-10-17 08:30:02 UTC -* Number of recursive dependencies: 163 - -Run `revdepcheck::cloud_details(, "easybgm")` for more info - -
- -## In both - -* checking whether package ‘easybgm’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/easybgm/new/easybgm.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘easybgm’ ... -** package ‘easybgm’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘easybgm’ -* removing ‘/tmp/workdir/easybgm/new/easybgm.Rcheck/easybgm’ - - -``` -### CRAN - -``` -* installing *source* package ‘easybgm’ ... -** package ‘easybgm’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘easybgm’ -* removing ‘/tmp/workdir/easybgm/old/easybgm.Rcheck/easybgm’ - - -``` -# EcoEnsemble - -
- -* Version: 1.1.0 -* GitHub: https://github.com/CefasRepRes/EcoEnsemble -* Source code: https://github.com/cran/EcoEnsemble -* Date/Publication: 2024-08-19 17:20:06 UTC -* Number of recursive dependencies: 90 - -Run `revdepcheck::cloud_details(, "EcoEnsemble")` for more info - -
- -## In both - -* checking whether package ‘EcoEnsemble’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/EcoEnsemble/new/EcoEnsemble.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘EcoEnsemble’ ... -** package ‘EcoEnsemble’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -using C++17 - - -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I"../inst/include" -I"/usr/local/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/usr/local/lib/R/site-library/BH/include' -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppEigen/include' -I'/usr/local/lib/R/site-library/RcppParallel/include' -I'/usr/local/lib/R/site-library/rstan/include' -I'/usr/local/lib/R/site-library/StanHeaders/include' -I/usr/local/include -I'/usr/local/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c KF_back.cpp -o KF_back.o -In file included from /usr/local/lib/R/site-library/RcppEigen/include/Eigen/Core:205, -... -/usr/local/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:0: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_ensemble_model_hierarchical_namespace::model_ensemble_model_hierarchical; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’ -/usr/local/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:0: required from here -/usr/local/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] - 654 | return internal::first_aligned::alignment),Derived>(m); - | ^~~~~~~~~ -g++: fatal error: Killed signal terminated program cc1plus -compilation terminated. -make: *** [/opt/R/4.3.1/lib/R/etc/Makeconf:198: stanExports_ensemble_model_hierarchical.o] Error 1 -ERROR: compilation failed for package ‘EcoEnsemble’ -* removing ‘/tmp/workdir/EcoEnsemble/new/EcoEnsemble.Rcheck/EcoEnsemble’ - - -``` -### CRAN - -``` -* installing *source* package ‘EcoEnsemble’ ... -** package ‘EcoEnsemble’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -using C++17 - - -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I"../inst/include" -I"/usr/local/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/usr/local/lib/R/site-library/BH/include' -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppEigen/include' -I'/usr/local/lib/R/site-library/RcppParallel/include' -I'/usr/local/lib/R/site-library/rstan/include' -I'/usr/local/lib/R/site-library/StanHeaders/include' -I/usr/local/include -I'/usr/local/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c KF_back.cpp -o KF_back.o -In file included from /usr/local/lib/R/site-library/RcppEigen/include/Eigen/Core:205, -... -/usr/local/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:0: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_ensemble_model_hierarchical_namespace::model_ensemble_model_hierarchical; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’ -/usr/local/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:0: required from here -/usr/local/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] - 654 | return internal::first_aligned::alignment),Derived>(m); - | ^~~~~~~~~ -g++: fatal error: Killed signal terminated program cc1plus -compilation terminated. -make: *** [/opt/R/4.3.1/lib/R/etc/Makeconf:198: stanExports_ensemble_model_hierarchical.o] Error 1 -ERROR: compilation failed for package ‘EcoEnsemble’ -* removing ‘/tmp/workdir/EcoEnsemble/old/EcoEnsemble.Rcheck/EcoEnsemble’ - - -``` -# ecolottery - -
- -* Version: 1.0.0 -* GitHub: https://github.com/frmunoz/ecolottery -* Source code: https://github.com/cran/ecolottery -* Date/Publication: 2017-07-03 11:01:29 UTC -* Number of recursive dependencies: 87 - -Run `revdepcheck::cloud_details(, "ecolottery")` for more info - -
- -## In both - -* checking whether package ‘ecolottery’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/ecolottery/new/ecolottery.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘ecolottery’ ... -** package ‘ecolottery’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘ecolottery’ -* removing ‘/tmp/workdir/ecolottery/new/ecolottery.Rcheck/ecolottery’ - - -``` -### CRAN - -``` -* installing *source* package ‘ecolottery’ ... -** package ‘ecolottery’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘ecolottery’ -* removing ‘/tmp/workdir/ecolottery/old/ecolottery.Rcheck/ecolottery’ - - -``` -# EdSurvey - -
- -* Version: 4.0.7 -* GitHub: https://github.com/American-Institutes-for-Research/EdSurvey -* Source code: https://github.com/cran/EdSurvey -* Date/Publication: 2024-06-27 14:50:14 UTC -* Number of recursive dependencies: 127 - -Run `revdepcheck::cloud_details(, "EdSurvey")` for more info - -
- -## In both - -* checking whether package ‘EdSurvey’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/EdSurvey/new/EdSurvey.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘EdSurvey’ ... -** package ‘EdSurvey’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Warning in check_dep_version() : - ABI version mismatch: -lme4 was built with Matrix ABI version 1 -Current Matrix ABI version is 0 -Please re-install lme4 from source or restore original ‘Matrix’ package -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘EdSurvey’ -* removing ‘/tmp/workdir/EdSurvey/new/EdSurvey.Rcheck/EdSurvey’ - - -``` -### CRAN - -``` -* installing *source* package ‘EdSurvey’ ... -** package ‘EdSurvey’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Warning in check_dep_version() : - ABI version mismatch: -lme4 was built with Matrix ABI version 1 -Current Matrix ABI version is 0 -Please re-install lme4 from source or restore original ‘Matrix’ package -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘EdSurvey’ -* removing ‘/tmp/workdir/EdSurvey/old/EdSurvey.Rcheck/EdSurvey’ - - -``` -# emplik - -
- -* Version: 1.3-1 -* GitHub: NA -* Source code: https://github.com/cran/emplik -* Date/Publication: 2023-09-07 17:00:02 UTC -* Number of recursive dependencies: 33 - -Run `revdepcheck::cloud_details(, "emplik")` for more info - -
- -## In both - -* checking whether package ‘emplik’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/emplik/new/emplik.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘emplik’ ... -** package ‘emplik’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C compiler: ‘gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c cumsumsurv.c -o cumsumsurv.o -gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o -gcc -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o emplik.so cumsumsurv.o init.o -L/opt/R/4.3.1/lib/R/lib -lR -installing to /tmp/workdir/emplik/new/emplik.Rcheck/00LOCK-emplik/00new/emplik/libs -** R -** data -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘emplik’ -* removing ‘/tmp/workdir/emplik/new/emplik.Rcheck/emplik’ - - -``` -### CRAN - -``` -* installing *source* package ‘emplik’ ... -** package ‘emplik’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C compiler: ‘gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c cumsumsurv.c -o cumsumsurv.o -gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o -gcc -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o emplik.so cumsumsurv.o init.o -L/opt/R/4.3.1/lib/R/lib -lR -installing to /tmp/workdir/emplik/old/emplik.Rcheck/00LOCK-emplik/00new/emplik/libs -** R -** data -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘emplik’ -* removing ‘/tmp/workdir/emplik/old/emplik.Rcheck/emplik’ - - -``` -# EpiEstim - -
- -* Version: 2.2-4 -* GitHub: https://github.com/mrc-ide/EpiEstim -* Source code: https://github.com/cran/EpiEstim -* Date/Publication: 2021-01-07 16:20:10 UTC -* Number of recursive dependencies: 90 - -Run `revdepcheck::cloud_details(, "EpiEstim")` for more info - -
- -## In both - -* checking whether package ‘EpiEstim’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/EpiEstim/new/EpiEstim.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘EpiEstim’ ... -** package ‘EpiEstim’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘EpiEstim’ -* removing ‘/tmp/workdir/EpiEstim/new/EpiEstim.Rcheck/EpiEstim’ - - -``` -### CRAN - -``` -* installing *source* package ‘EpiEstim’ ... -** package ‘EpiEstim’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘EpiEstim’ -* removing ‘/tmp/workdir/EpiEstim/old/EpiEstim.Rcheck/EpiEstim’ - - -``` -# epizootic - -
- -* Version: 1.0.0 -* GitHub: https://github.com/viralemergence/epizootic -* Source code: https://github.com/cran/epizootic -* Date/Publication: 2024-10-02 13:10:05 UTC -* Number of recursive dependencies: 93 - -Run `revdepcheck::cloud_details(, "epizootic")` for more info - -
- -## In both - -* checking whether package ‘epizootic’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/epizootic/new/epizootic.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘epizootic’ ... -** package ‘epizootic’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c aspatial_siri.cpp -o aspatial_siri.o -g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o epizootic.so RcppExports.o aspatial_siri.o -fopenmp -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR -installing to /tmp/workdir/epizootic/new/epizootic.Rcheck/00LOCK-epizootic/00new/epizootic/libs -** R -... -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘epizootic’ -* removing ‘/tmp/workdir/epizootic/new/epizootic.Rcheck/epizootic’ - - -``` -### CRAN - -``` -* installing *source* package ‘epizootic’ ... -** package ‘epizootic’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c aspatial_siri.cpp -o aspatial_siri.o -g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o epizootic.so RcppExports.o aspatial_siri.o -fopenmp -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR -installing to /tmp/workdir/epizootic/old/epizootic.Rcheck/00LOCK-epizootic/00new/epizootic/libs -** R -... -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘epizootic’ -* removing ‘/tmp/workdir/epizootic/old/epizootic.Rcheck/epizootic’ - - -``` -# erah - -
- -* Version: 2.0.1 -* GitHub: https://github.com/xdomingoal/erah-devel -* Source code: https://github.com/cran/erah -* Date/Publication: 2023-12-20 10:10:02 UTC -* Number of recursive dependencies: 90 - -Run `revdepcheck::cloud_details(, "erah")` for more info - -
- -## In both - -* checking whether package ‘erah’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/erah/new/erah.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘erah’ ... -** package ‘erah’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C compiler: ‘gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c registerDynamicSymbol.c -o registerDynamicSymbol.o -gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c runfunc.c -o runfunc.o -gcc -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o erah.so registerDynamicSymbol.o runfunc.o -L/opt/R/4.3.1/lib/R/lib -lR -installing to /tmp/workdir/erah/new/erah.Rcheck/00LOCK-erah/00new/erah/libs -** R -... -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘erah’ -* removing ‘/tmp/workdir/erah/new/erah.Rcheck/erah’ - - -``` -### CRAN - -``` -* installing *source* package ‘erah’ ... -** package ‘erah’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C compiler: ‘gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c registerDynamicSymbol.c -o registerDynamicSymbol.o -gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c runfunc.c -o runfunc.o -gcc -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o erah.so registerDynamicSymbol.o runfunc.o -L/opt/R/4.3.1/lib/R/lib -lR -installing to /tmp/workdir/erah/old/erah.Rcheck/00LOCK-erah/00new/erah/libs -** R -... -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘erah’ -* removing ‘/tmp/workdir/erah/old/erah.Rcheck/erah’ - - -``` -# evolqg - -
- -* Version: 0.3-4 -* GitHub: https://github.com/lem-usp/evolqg -* Source code: https://github.com/cran/evolqg -* Date/Publication: 2023-12-05 15:20:12 UTC -* Number of recursive dependencies: 110 - -Run `revdepcheck::cloud_details(, "evolqg")` for more info - -
- -## In both - -* checking whether package ‘evolqg’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/evolqg/new/evolqg.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘evolqg’ ... -** package ‘evolqg’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c fast_RS.cpp -o fast_RS.o -g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o evolqg.so RcppExports.o fast_RS.o -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR -installing to /tmp/workdir/evolqg/new/evolqg.Rcheck/00LOCK-evolqg/00new/evolqg/libs -** R -** data -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘evolqg’ -* removing ‘/tmp/workdir/evolqg/new/evolqg.Rcheck/evolqg’ - - -``` -### CRAN - -``` -* installing *source* package ‘evolqg’ ... -** package ‘evolqg’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c fast_RS.cpp -o fast_RS.o -g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o evolqg.so RcppExports.o fast_RS.o -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR -installing to /tmp/workdir/evolqg/old/evolqg.Rcheck/00LOCK-evolqg/00new/evolqg/libs -** R -** data -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘evolqg’ -* removing ‘/tmp/workdir/evolqg/old/evolqg.Rcheck/evolqg’ - - -``` -# EWSmethods - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/EWSmethods -* Number of recursive dependencies: 139 - -Run `revdepcheck::cloud_details(, "EWSmethods")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# ezECM - -
- -* Version: 1.0.0 -* GitHub: https://github.com/lanl/ezECM -* Source code: https://github.com/cran/ezECM -* Date/Publication: 2024-10-17 17:10:01 UTC -* Number of recursive dependencies: 119 - -Run `revdepcheck::cloud_details(, "ezECM")` for more info - -
- -## In both - -* checking whether package ‘ezECM’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/ezECM/new/ezECM.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘ezECM’ ... -** package ‘ezECM’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘ezECM’ -* removing ‘/tmp/workdir/ezECM/new/ezECM.Rcheck/ezECM’ - - -``` -### CRAN - -``` -* installing *source* package ‘ezECM’ ... -** package ‘ezECM’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘ezECM’ -* removing ‘/tmp/workdir/ezECM/old/ezECM.Rcheck/ezECM’ - - -``` -# FAIRmaterials - -
- -* Version: 0.4.2.1 -* GitHub: NA -* Source code: https://github.com/cran/FAIRmaterials -* Date/Publication: 2024-06-27 15:40:02 UTC -* Number of recursive dependencies: 93 - -Run `revdepcheck::cloud_details(, "FAIRmaterials")` for more info - -
- -## In both - -* checking whether package ‘FAIRmaterials’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/FAIRmaterials/new/FAIRmaterials.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘FAIRmaterials’ ... -** package ‘FAIRmaterials’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Error in dyn.load(file, DLLpath = DLLpath, ...) : - unable to load shared object '/usr/local/lib/R/site-library/redland/libs/redland.so': - librdf.so.0: cannot open shared object file: No such file or directory -Calls: ... asNamespace -> loadNamespace -> library.dynam -> dyn.load -Execution halted -ERROR: lazy loading failed for package ‘FAIRmaterials’ -* removing ‘/tmp/workdir/FAIRmaterials/new/FAIRmaterials.Rcheck/FAIRmaterials’ - - -``` -### CRAN - -``` -* installing *source* package ‘FAIRmaterials’ ... -** package ‘FAIRmaterials’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Error in dyn.load(file, DLLpath = DLLpath, ...) : - unable to load shared object '/usr/local/lib/R/site-library/redland/libs/redland.so': - librdf.so.0: cannot open shared object file: No such file or directory -Calls: ... asNamespace -> loadNamespace -> library.dynam -> dyn.load -Execution halted -ERROR: lazy loading failed for package ‘FAIRmaterials’ -* removing ‘/tmp/workdir/FAIRmaterials/old/FAIRmaterials.Rcheck/FAIRmaterials’ - - -``` -# FastJM - -
- -* Version: 1.4.2 -* GitHub: NA -* Source code: https://github.com/cran/FastJM -* Date/Publication: 2024-03-01 00:12:34 UTC -* Number of recursive dependencies: 146 - -Run `revdepcheck::cloud_details(, "FastJM")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/FastJM/new/FastJM.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘FastJM/DESCRIPTION’ ... OK -... -* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK -* checking use of PKG_*FLAGS in Makefiles ... OK -* checking compiled code ... OK -* checking examples ... OK -* checking for unstated dependencies in ‘tests’ ... OK -* checking tests ... OK - Running ‘spelling.R’ - Running ‘testthat.R’ -* DONE -Status: 1 NOTE - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/FastJM/old/FastJM.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘FastJM/DESCRIPTION’ ... OK -... -* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK -* checking use of PKG_*FLAGS in Makefiles ... OK -* checking compiled code ... OK -* checking examples ... OK -* checking for unstated dependencies in ‘tests’ ... OK -* checking tests ... OK - Running ‘spelling.R’ - Running ‘testthat.R’ -* DONE -Status: 1 NOTE - - - - - -``` -# fdaPDE - -
- -* Version: 1.1-20 -* GitHub: NA -* Source code: https://github.com/cran/fdaPDE -* Date/Publication: 2024-09-17 09:20:02 UTC -* Number of recursive dependencies: 50 - -Run `revdepcheck::cloud_details(, "fdaPDE")` for more info - -
- -## In both - -* checking whether package ‘fdaPDE’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/fdaPDE/new/fdaPDE.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘fdaPDE’ ... -** package ‘fdaPDE’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C compiler: ‘gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -using C++17 -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/RcppEigen/include' -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c Density_Estimation/Source/Rfun_Density_Estimation.cpp -o Density_Estimation/Source/Rfun_Density_Estimation.o -In file included from /usr/local/lib/R/site-library/RcppEigen/include/Eigen/Core:205, - from /usr/local/lib/R/site-library/RcppEigen/include/Eigen/StdVector:14, -... -/usr/local/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:225:24: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::CwiseBinaryOp, const Eigen::Solve >, Eigen::CwiseNullaryOp, Eigen::Matrix > >, const Eigen::Solve >, Eigen::Product >, Eigen::Matrix, 0>, Eigen::Transpose >, 0>, Eigen::Matrix, 0>, Eigen::Solve >, Eigen::CwiseNullaryOp, Eigen::Matrix > >, 0> > > >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ -Regression/Source/../../Skeletons/Include/../../Inference/Include/Wald_imp.h:54:5: required from ‘void Wald_Base::compute_V() [with InputHandler = RegressionData; MatrixType = Eigen::Matrix]’ -Regression/Source/../../Skeletons/Include/../../Inference/Include/Wald_imp.h:123:5: required from ‘VectorXr Wald_Base::compute_beta_pvalue() [with InputHandler = RegressionData; MatrixType = Eigen::Matrix; VectorXr = Eigen::Matrix]’ -Regression/Source/../../Skeletons/Include/../../Inference/Include/Wald_imp.h:104:10: required from here -/usr/local/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] -g++: fatal error: Killed signal terminated program cc1plus -compilation terminated. -make: *** [/opt/R/4.3.1/lib/R/etc/Makeconf:200: Regression/Source/Rfun_Regression_Laplace.o] Error 1 -ERROR: compilation failed for package ‘fdaPDE’ -* removing ‘/tmp/workdir/fdaPDE/new/fdaPDE.Rcheck/fdaPDE’ - - -``` -### CRAN - -``` -* installing *source* package ‘fdaPDE’ ... -** package ‘fdaPDE’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C compiler: ‘gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -using C++17 -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/RcppEigen/include' -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c Density_Estimation/Source/Rfun_Density_Estimation.cpp -o Density_Estimation/Source/Rfun_Density_Estimation.o -In file included from /usr/local/lib/R/site-library/RcppEigen/include/Eigen/Core:205, - from /usr/local/lib/R/site-library/RcppEigen/include/Eigen/StdVector:14, -... -/usr/local/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:225:24: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::CwiseBinaryOp, const Eigen::Solve >, Eigen::CwiseNullaryOp, Eigen::Matrix > >, const Eigen::Solve >, Eigen::Product >, Eigen::Matrix, 0>, Eigen::Transpose >, 0>, Eigen::Matrix, 0>, Eigen::Solve >, Eigen::CwiseNullaryOp, Eigen::Matrix > >, 0> > > >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ -Regression/Source/../../Skeletons/Include/../../Inference/Include/Wald_imp.h:54:5: required from ‘void Wald_Base::compute_V() [with InputHandler = RegressionData; MatrixType = Eigen::Matrix]’ -Regression/Source/../../Skeletons/Include/../../Inference/Include/Wald_imp.h:123:5: required from ‘VectorXr Wald_Base::compute_beta_pvalue() [with InputHandler = RegressionData; MatrixType = Eigen::Matrix; VectorXr = Eigen::Matrix]’ -Regression/Source/../../Skeletons/Include/../../Inference/Include/Wald_imp.h:104:10: required from here -/usr/local/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] -g++: fatal error: Killed signal terminated program cc1plus -compilation terminated. -make: *** [/opt/R/4.3.1/lib/R/etc/Makeconf:200: Regression/Source/Rfun_Regression_Laplace.o] Error 1 -ERROR: compilation failed for package ‘fdaPDE’ -* removing ‘/tmp/workdir/fdaPDE/old/fdaPDE.Rcheck/fdaPDE’ - - -``` -# flowr - -
- -* Version: 0.9.11 -* GitHub: https://github.com/flow-r/flowr -* Source code: https://github.com/cran/flowr -* Date/Publication: 2021-03-02 22:00:03 UTC -* Number of recursive dependencies: 0 - -Run `revdepcheck::cloud_details(, "flowr")` for more info - -
- -## In both - -* checking whether package ‘flowr’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/flowr/new/flowr.Rcheck/00install.out’ for details. - ``` - -* checking package dependencies ... NOTE - ``` - Packages which this enhances but not available for checking: - 'ggplot2', 'openxlsx', 'pacman', 'cowplot' - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘flowr’ ... -** package ‘flowr’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘params’: - .onLoad failed in loadNamespace() for 'params', details: - call: glue_data(.x = NULL, ..., .sep = .sep, .envir = .envir, .open = .open, - error: is.environment(.envir) is not TRUE -Execution halted -ERROR: lazy loading failed for package ‘flowr’ -* removing ‘/tmp/workdir/flowr/new/flowr.Rcheck/flowr’ - - -``` -### CRAN - -``` -* installing *source* package ‘flowr’ ... -** package ‘flowr’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘params’: - .onLoad failed in loadNamespace() for 'params', details: - call: glue_data(.x = NULL, ..., .sep = .sep, .envir = .envir, .open = .open, - error: is.environment(.envir) is not TRUE -Execution halted -ERROR: lazy loading failed for package ‘flowr’ -* removing ‘/tmp/workdir/flowr/old/flowr.Rcheck/flowr’ - - -``` -# ForecastComb - -
- -* Version: 1.3.1 -* GitHub: https://github.com/ceweiss/ForecastComb -* Source code: https://github.com/cran/ForecastComb -* Date/Publication: 2018-08-07 13:50:08 UTC -* Number of recursive dependencies: 73 - -Run `revdepcheck::cloud_details(, "ForecastComb")` for more info - -
- -## In both - -* checking whether package ‘ForecastComb’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/ForecastComb/new/ForecastComb.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘ForecastComb’ ... -** package ‘ForecastComb’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘ForecastComb’ -* removing ‘/tmp/workdir/ForecastComb/new/ForecastComb.Rcheck/ForecastComb’ - - -``` -### CRAN - -``` -* installing *source* package ‘ForecastComb’ ... -** package ‘ForecastComb’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘ForecastComb’ -* removing ‘/tmp/workdir/ForecastComb/old/ForecastComb.Rcheck/ForecastComb’ - - -``` -# FoReco - -
- -* Version: 1.0.0 -* GitHub: https://github.com/daniGiro/FoReco -* Source code: https://github.com/cran/FoReco -* Date/Publication: 2024-08-20 22:20:05 UTC -* Number of recursive dependencies: 28 - -Run `revdepcheck::cloud_details(, "FoReco")` for more info - -
- -## In both - -* checking whether package ‘FoReco’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/FoReco/new/FoReco.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘FoReco’ ... -** package ‘FoReco’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.1 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘FoReco’ -* removing ‘/tmp/workdir/FoReco/new/FoReco.Rcheck/FoReco’ - - -``` -### CRAN - -``` -* installing *source* package ‘FoReco’ ... -** package ‘FoReco’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.1 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘FoReco’ -* removing ‘/tmp/workdir/FoReco/old/FoReco.Rcheck/FoReco’ - - -``` -# frechet - -
- -* Version: 0.3.0 -* GitHub: https://github.com/functionaldata/tFrechet -* Source code: https://github.com/cran/frechet -* Date/Publication: 2023-12-09 15:50:08 UTC -* Number of recursive dependencies: 110 - -Run `revdepcheck::cloud_details(, "frechet")` for more info - -
- -## In both - -* checking whether package ‘frechet’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/frechet/new/frechet.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘frechet’ ... -** package ‘frechet’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.1 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘frechet’ -* removing ‘/tmp/workdir/frechet/new/frechet.Rcheck/frechet’ - - -``` -### CRAN - -``` -* installing *source* package ‘frechet’ ... -** package ‘frechet’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.1 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘frechet’ -* removing ‘/tmp/workdir/frechet/old/frechet.Rcheck/frechet’ - - -``` -# FREEtree - -
- -* Version: 0.1.0 -* GitHub: NA -* Source code: https://github.com/cran/FREEtree -* Date/Publication: 2020-06-25 15:00:03 UTC -* Number of recursive dependencies: 133 - -Run `revdepcheck::cloud_details(, "FREEtree")` for more info - -
- -## In both - -* checking whether package ‘FREEtree’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/FREEtree/new/FREEtree.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘FREEtree’ ... -** package ‘FREEtree’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Warning in check_dep_version() : - ABI version mismatch: -lme4 was built with Matrix ABI version 1 -Current Matrix ABI version is 0 -Please re-install lme4 from source or restore original ‘Matrix’ package -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘FREEtree’ -* removing ‘/tmp/workdir/FREEtree/new/FREEtree.Rcheck/FREEtree’ - - -``` -### CRAN - -``` -* installing *source* package ‘FREEtree’ ... -** package ‘FREEtree’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Warning in check_dep_version() : - ABI version mismatch: -lme4 was built with Matrix ABI version 1 -Current Matrix ABI version is 0 -Please re-install lme4 from source or restore original ‘Matrix’ package -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘FREEtree’ -* removing ‘/tmp/workdir/FREEtree/old/FREEtree.Rcheck/FREEtree’ - - -``` -# gapfill - -
- -* Version: 0.9.6-1 -* GitHub: https://github.com/florafauna/gapfill -* Source code: https://github.com/cran/gapfill -* Date/Publication: 2021-02-12 10:10:05 UTC -* Number of recursive dependencies: 70 - -Run `revdepcheck::cloud_details(, "gapfill")` for more info - -
- -## In both - -* checking whether package ‘gapfill’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/gapfill/new/gapfill.Rcheck/00install.out’ for details. - ``` - -* checking package dependencies ... NOTE - ``` - Packages which this enhances but not available for checking: - 'raster', 'doParallel', 'doMPI' - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘gapfill’ ... -** package ‘gapfill’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c gapfill.cpp -o gapfill.o -g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o gapfill.so RcppExports.o gapfill.o -L/opt/R/4.3.1/lib/R/lib -lR -installing to /tmp/workdir/gapfill/new/gapfill.Rcheck/00LOCK-gapfill/00new/gapfill/libs -** R -... -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘gapfill’ -* removing ‘/tmp/workdir/gapfill/new/gapfill.Rcheck/gapfill’ - - -``` -### CRAN - -``` -* installing *source* package ‘gapfill’ ... -** package ‘gapfill’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c gapfill.cpp -o gapfill.o -g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o gapfill.so RcppExports.o gapfill.o -L/opt/R/4.3.1/lib/R/lib -lR -installing to /tmp/workdir/gapfill/old/gapfill.Rcheck/00LOCK-gapfill/00new/gapfill/libs -** R -... -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘gapfill’ -* removing ‘/tmp/workdir/gapfill/old/gapfill.Rcheck/gapfill’ - - -``` -# GeomComb - -
- -* Version: 1.0 -* GitHub: https://github.com/ceweiss/GeomComb -* Source code: https://github.com/cran/GeomComb -* Date/Publication: 2016-11-27 16:02:26 -* Number of recursive dependencies: 74 - -Run `revdepcheck::cloud_details(, "GeomComb")` for more info - -
- -## In both - -* checking whether package ‘GeomComb’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/GeomComb/new/GeomComb.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘GeomComb’ ... -** package ‘GeomComb’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘GeomComb’ -* removing ‘/tmp/workdir/GeomComb/new/GeomComb.Rcheck/GeomComb’ - - -``` -### CRAN - -``` -* installing *source* package ‘GeomComb’ ... -** package ‘GeomComb’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘GeomComb’ -* removing ‘/tmp/workdir/GeomComb/old/GeomComb.Rcheck/GeomComb’ - - -``` -# geomorph - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/geomorph -* Number of recursive dependencies: 71 - -Run `revdepcheck::cloud_details(, "geomorph")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# gllvm - -
- -* Version: 1.4.3 -* GitHub: https://github.com/JenniNiku/gllvm -* Source code: https://github.com/cran/gllvm -* Date/Publication: 2023-09-18 15:00:02 UTC -* Number of recursive dependencies: 60 - -Run `revdepcheck::cloud_details(, "gllvm")` for more info - -
- -## In both - -* checking whether package ‘gllvm’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/gllvm/new/gllvm.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘gllvm’ ... -** package ‘gllvm’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -DTMBAD_FRAMEWORK -I'/usr/local/lib/R/site-library/TMB/include' -I'/usr/local/lib/R/site-library/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -c gllvm.cpp -o gllvm.o -In file included from /usr/local/lib/R/site-library/RcppEigen/include/Eigen/Core:205, - from /usr/local/lib/R/site-library/RcppEigen/include/Eigen/Dense:1, - from /usr/local/lib/R/site-library/TMB/include/TMB.hpp:92, - from gllvm.cpp:2: -... -/usr/local/lib/R/site-library/TMB/include/tiny_ad/atomic.hpp:30:1: required from ‘void atomic::bessel_kOp::reverse(TMBad::ReverseArgs&) [with Type = double; int order = 3; int ninput = 2; int noutput = 8; long int mask = 9]’ -/usr/local/lib/R/site-library/TMB/include/TMBad/global.hpp:1721:28: required from ‘void TMBad::global::AddForwardMarkReverseMark::reverse(TMBad::ReverseArgs&) [with Type = double; OperatorBase = TMBad::global::AddIncrementDecrement > > >]’ -/usr/local/lib/R/site-library/TMB/include/TMBad/global.hpp:2134:57: required from ‘void TMBad::global::Complete::reverse(TMBad::ReverseArgs&) [with OperatorBase = atomic::bessel_kOp<3, 2, 8, 9>]’ -/usr/local/lib/R/site-library/TMB/include/TMBad/global.hpp:2134:10: required from here -/usr/local/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] -g++: fatal error: Killed signal terminated program cc1plus -compilation terminated. -make: *** [/opt/R/4.3.1/lib/R/etc/Makeconf:200: gllvm.o] Error 1 -ERROR: compilation failed for package ‘gllvm’ -* removing ‘/tmp/workdir/gllvm/new/gllvm.Rcheck/gllvm’ - - -``` -### CRAN - -``` -* installing *source* package ‘gllvm’ ... -** package ‘gllvm’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -DTMBAD_FRAMEWORK -I'/usr/local/lib/R/site-library/TMB/include' -I'/usr/local/lib/R/site-library/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -c gllvm.cpp -o gllvm.o -In file included from /usr/local/lib/R/site-library/RcppEigen/include/Eigen/Core:205, - from /usr/local/lib/R/site-library/RcppEigen/include/Eigen/Dense:1, - from /usr/local/lib/R/site-library/TMB/include/TMB.hpp:92, - from gllvm.cpp:2: -... -/usr/local/lib/R/site-library/TMB/include/tiny_ad/atomic.hpp:30:1: required from ‘void atomic::bessel_kOp::reverse(TMBad::ReverseArgs&) [with Type = double; int order = 3; int ninput = 2; int noutput = 8; long int mask = 9]’ -/usr/local/lib/R/site-library/TMB/include/TMBad/global.hpp:1721:28: required from ‘void TMBad::global::AddForwardMarkReverseMark::reverse(TMBad::ReverseArgs&) [with Type = double; OperatorBase = TMBad::global::AddIncrementDecrement > > >]’ -/usr/local/lib/R/site-library/TMB/include/TMBad/global.hpp:2134:57: required from ‘void TMBad::global::Complete::reverse(TMBad::ReverseArgs&) [with OperatorBase = atomic::bessel_kOp<3, 2, 8, 9>]’ -/usr/local/lib/R/site-library/TMB/include/TMBad/global.hpp:2134:10: required from here -/usr/local/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] -g++: fatal error: Killed signal terminated program cc1plus -compilation terminated. -make: *** [/opt/R/4.3.1/lib/R/etc/Makeconf:200: gllvm.o] Error 1 -ERROR: compilation failed for package ‘gllvm’ -* removing ‘/tmp/workdir/gllvm/old/gllvm.Rcheck/gllvm’ - - -``` -# gmoTree - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/gmoTree -* Number of recursive dependencies: 60 - -Run `revdepcheck::cloud_details(, "gmoTree")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# gpuR - -
- -* Version: 2.0.6 -* GitHub: https://github.com/cdeterman/gpuR -* Source code: https://github.com/cran/gpuR -* Date/Publication: 2024-05-23 16:00:02 UTC -* Number of recursive dependencies: 32 - -Run `revdepcheck::cloud_details(, "gpuR")` for more info - -
- -## In both - -* checking whether package ‘gpuR’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/gpuR/new/gpuR.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘gpuR’ ... -** package ‘gpuR’ successfully unpacked and MD5 sums checked -** using staged installation -OPENCL_FLAGS not set, using default -DCL_HPP_MINIMUM_OPENCL_VERSION=110 -DCL_USE_DEPRECATED_OPENCL_1_2_APIS -DCL_HPP_TARGET_OPENCL_VERSION=120 -Linux OS -found OpenCL library -Checking OpenCL C++ API -OPENCL_INC not set, using default include directory /usr/include -No OpenCL C++ API found, will use the headers contained in the package - -... -/usr/local/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Assign.h:66:28: required from ‘Derived& Eigen::MatrixBase::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Matrix; Derived = Eigen::Block, 0, Eigen::OuterStride<> >, -1, 1, true>]’ -../inst/include/gpuR/dynEigenMat.hpp:192:30: required from ‘void dynEigenMat::setCol(SEXP, int) [with T = double; SEXP = SEXPREC*]’ -../inst/include/gpuR/dynEigenMat.hpp:383:16: required from here -/usr/local/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] -g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o gpuR.so RcppExports.o chol.o context.o custom_math.o device.o gpuEigenPtr.o gpuMatrix_igemm.o norm.o platform.o set_row_order.o solve.o synchronize.o trunc_gpuMat.o utils-vcl.o utils.o vclPtr.o vienna_blas1.o vienna_blas2.o vienna_blas3.o vienna_eigen.o vienna_qr.o vienna_stats.o vienna_svd.o -lOpenCL -L/opt/R/4.3.1/lib/R/lib -lR -/usr/bin/ld: cannot find -lOpenCL: No such file or directory -collect2: error: ld returned 1 exit status -make: *** [/opt/R/4.3.1/lib/R/share/make/shlib.mk:10: gpuR.so] Error 1 -ERROR: compilation failed for package ‘gpuR’ -* removing ‘/tmp/workdir/gpuR/new/gpuR.Rcheck/gpuR’ - - -``` -### CRAN - -``` -* installing *source* package ‘gpuR’ ... -** package ‘gpuR’ successfully unpacked and MD5 sums checked -** using staged installation -OPENCL_FLAGS not set, using default -DCL_HPP_MINIMUM_OPENCL_VERSION=110 -DCL_USE_DEPRECATED_OPENCL_1_2_APIS -DCL_HPP_TARGET_OPENCL_VERSION=120 -Linux OS -found OpenCL library -Checking OpenCL C++ API -OPENCL_INC not set, using default include directory /usr/include -No OpenCL C++ API found, will use the headers contained in the package - -... -/usr/local/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Assign.h:66:28: required from ‘Derived& Eigen::MatrixBase::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Matrix; Derived = Eigen::Block, 0, Eigen::OuterStride<> >, -1, 1, true>]’ -../inst/include/gpuR/dynEigenMat.hpp:192:30: required from ‘void dynEigenMat::setCol(SEXP, int) [with T = double; SEXP = SEXPREC*]’ -../inst/include/gpuR/dynEigenMat.hpp:383:16: required from here -/usr/local/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] -g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o gpuR.so RcppExports.o chol.o context.o custom_math.o device.o gpuEigenPtr.o gpuMatrix_igemm.o norm.o platform.o set_row_order.o solve.o synchronize.o trunc_gpuMat.o utils-vcl.o utils.o vclPtr.o vienna_blas1.o vienna_blas2.o vienna_blas3.o vienna_eigen.o vienna_qr.o vienna_stats.o vienna_svd.o -lOpenCL -L/opt/R/4.3.1/lib/R/lib -lR -/usr/bin/ld: cannot find -lOpenCL: No such file or directory -collect2: error: ld returned 1 exit status -make: *** [/opt/R/4.3.1/lib/R/share/make/shlib.mk:10: gpuR.so] Error 1 -ERROR: compilation failed for package ‘gpuR’ -* removing ‘/tmp/workdir/gpuR/old/gpuR.Rcheck/gpuR’ - - -``` -# hettx - -
- -* Version: 0.1.3 -* GitHub: https://github.com/bfifield/hettx -* Source code: https://github.com/cran/hettx -* Date/Publication: 2023-08-19 22:22:34 UTC -* Number of recursive dependencies: 84 - -Run `revdepcheck::cloud_details(, "hettx")` for more info - -
- -## In both - -* checking whether package ‘hettx’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/hettx/new/hettx.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘hettx’ ... -** package ‘hettx’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘hettx’ -* removing ‘/tmp/workdir/hettx/new/hettx.Rcheck/hettx’ - - -``` -### CRAN - -``` -* installing *source* package ‘hettx’ ... -** package ‘hettx’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘hettx’ -* removing ‘/tmp/workdir/hettx/old/hettx.Rcheck/hettx’ - - -``` -# Hmsc - -
- -* Version: 3.0-13 -* GitHub: https://github.com/hmsc-r/HMSC -* Source code: https://github.com/cran/Hmsc -* Date/Publication: 2022-08-11 14:10:14 UTC -* Number of recursive dependencies: 75 - -Run `revdepcheck::cloud_details(, "Hmsc")` for more info - -
- -## In both - -* checking whether package ‘Hmsc’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/Hmsc/new/Hmsc.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘Hmsc’ ... -** package ‘Hmsc’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘Hmsc’ -* removing ‘/tmp/workdir/Hmsc/new/Hmsc.Rcheck/Hmsc’ - - -``` -### CRAN - -``` -* installing *source* package ‘Hmsc’ ... -** package ‘Hmsc’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘Hmsc’ -* removing ‘/tmp/workdir/Hmsc/old/Hmsc.Rcheck/Hmsc’ - - -``` -# iNZightPlots - -
- -* Version: 2.15.3 -* GitHub: https://github.com/iNZightVIT/iNZightPlots -* Source code: https://github.com/cran/iNZightPlots -* Date/Publication: 2023-10-14 05:00:02 UTC -* Number of recursive dependencies: 161 - -Run `revdepcheck::cloud_details(, "iNZightPlots")` for more info - -
- -## In both - -* checking whether package ‘iNZightPlots’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/iNZightPlots/new/iNZightPlots.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘iNZightPlots’ ... -** package ‘iNZightPlots’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘iNZightPlots’ -* removing ‘/tmp/workdir/iNZightPlots/new/iNZightPlots.Rcheck/iNZightPlots’ - - -``` -### CRAN - -``` -* installing *source* package ‘iNZightPlots’ ... -** package ‘iNZightPlots’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘iNZightPlots’ -* removing ‘/tmp/workdir/iNZightPlots/old/iNZightPlots.Rcheck/iNZightPlots’ - - -``` -# iNZightRegression - -
- -* Version: 1.3.4 -* GitHub: https://github.com/iNZightVIT/iNZightRegression -* Source code: https://github.com/cran/iNZightRegression -* Date/Publication: 2024-04-05 02:32:59 UTC -* Number of recursive dependencies: 159 - -Run `revdepcheck::cloud_details(, "iNZightRegression")` for more info - -
- -## In both - -* checking whether package ‘iNZightRegression’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/iNZightRegression/new/iNZightRegression.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘iNZightRegression’ ... -** package ‘iNZightRegression’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘iNZightRegression’ -* removing ‘/tmp/workdir/iNZightRegression/new/iNZightRegression.Rcheck/iNZightRegression’ - - -``` -### CRAN - -``` -* installing *source* package ‘iNZightRegression’ ... -** package ‘iNZightRegression’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘iNZightRegression’ -* removing ‘/tmp/workdir/iNZightRegression/old/iNZightRegression.Rcheck/iNZightRegression’ - - -``` -# JMH - -
- -* Version: 1.0.3 -* GitHub: NA -* Source code: https://github.com/cran/JMH -* Date/Publication: 2024-02-20 06:40:02 UTC -* Number of recursive dependencies: 146 - -Run `revdepcheck::cloud_details(, "JMH")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/JMH/new/JMH.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘JMH/DESCRIPTION’ ... OK -... -* checking line endings in C/C++/Fortran sources/headers ... OK -* checking line endings in Makefiles ... OK -* checking compilation flags in Makevars ... OK -* checking for GNU extensions in Makefiles ... OK -* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK -* checking use of PKG_*FLAGS in Makefiles ... OK -* checking compiled code ... OK -* checking examples ... OK -* DONE -Status: 1 NOTE - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/JMH/old/JMH.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘JMH/DESCRIPTION’ ... OK -... -* checking line endings in C/C++/Fortran sources/headers ... OK -* checking line endings in Makefiles ... OK -* checking compilation flags in Makevars ... OK -* checking for GNU extensions in Makefiles ... OK -* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK -* checking use of PKG_*FLAGS in Makefiles ... OK -* checking compiled code ... OK -* checking examples ... OK -* DONE -Status: 1 NOTE - - - - - -``` -# joineRML - -
- -* Version: 0.4.6 -* GitHub: https://github.com/graemeleehickey/joineRML -* Source code: https://github.com/cran/joineRML -* Date/Publication: 2023-01-20 04:50:02 UTC -* Number of recursive dependencies: 90 - -Run `revdepcheck::cloud_details(, "joineRML")` for more info - -
- -## In both - -* checking whether package ‘joineRML’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/joineRML/new/joineRML.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘joineRML’ ... -** package ‘joineRML’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C compiler: ‘gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -using C++11 -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c expW.cpp -o expW.o -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c gammaUpdate.cpp -o gammaUpdate.o -... -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘joineRML’ -* removing ‘/tmp/workdir/joineRML/new/joineRML.Rcheck/joineRML’ - - -``` -### CRAN - -``` -* installing *source* package ‘joineRML’ ... -** package ‘joineRML’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C compiler: ‘gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -using C++11 -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c expW.cpp -o expW.o -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c gammaUpdate.cpp -o gammaUpdate.o -... -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘joineRML’ -* removing ‘/tmp/workdir/joineRML/old/joineRML.Rcheck/joineRML’ - - -``` -# jsmodule - -
- -* Version: 1.5.9 -* GitHub: https://github.com/jinseob2kim/jsmodule -* Source code: https://github.com/cran/jsmodule -* Date/Publication: 2024-10-17 05:50:02 UTC -* Number of recursive dependencies: 237 - -Run `revdepcheck::cloud_details(, "jsmodule")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/jsmodule/new/jsmodule.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘jsmodule/DESCRIPTION’ ... OK -... -* checking for unstated dependencies in ‘tests’ ... OK -* checking tests ... OK - Running ‘testthat.R’ -* checking for unstated dependencies in vignettes ... OK -* checking package vignettes in ‘inst/doc’ ... OK -* checking running R code from vignettes ... OK - ‘jsmodule.Rmd’ using ‘UTF-8’... OK -* checking re-building of vignette outputs ... OK -* DONE -Status: OK - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/jsmodule/old/jsmodule.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘jsmodule/DESCRIPTION’ ... OK -... -* checking for unstated dependencies in ‘tests’ ... OK -* checking tests ... OK - Running ‘testthat.R’ -* checking for unstated dependencies in vignettes ... OK -* checking package vignettes in ‘inst/doc’ ... OK -* checking running R code from vignettes ... OK - ‘jsmodule.Rmd’ using ‘UTF-8’... OK -* checking re-building of vignette outputs ... OK -* DONE -Status: OK - - - - - -``` -# kmc - -
- -* Version: 0.4-2 -* GitHub: https://github.com/yfyang86/kmc -* Source code: https://github.com/cran/kmc -* Date/Publication: 2022-11-22 08:30:02 UTC -* Number of recursive dependencies: 60 - -Run `revdepcheck::cloud_details(, "kmc")` for more info - -
- -## In both - -* checking whether package ‘kmc’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/kmc/new/kmc.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘kmc’ ... -** package ‘kmc’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C compiler: ‘gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExport.cpp -o RcppExport.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c kmc.cpp -o kmc.o -gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c kmc_init.c -o kmc_init.o -gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c surv2.c -o surv2.o -g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o kmc.so RcppExport.o kmc.o kmc_init.o surv2.o -L/opt/R/4.3.1/lib/R/lib -lR -installing to /tmp/workdir/kmc/new/kmc.Rcheck/00LOCK-kmc/00new/kmc/libs -** R -** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘emplik’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Execution halted -ERROR: lazy loading failed for package ‘kmc’ -* removing ‘/tmp/workdir/kmc/new/kmc.Rcheck/kmc’ - - -``` -### CRAN - -``` -* installing *source* package ‘kmc’ ... -** package ‘kmc’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C compiler: ‘gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExport.cpp -o RcppExport.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c kmc.cpp -o kmc.o -gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c kmc_init.c -o kmc_init.o -gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c surv2.c -o surv2.o -g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o kmc.so RcppExport.o kmc.o kmc_init.o surv2.o -L/opt/R/4.3.1/lib/R/lib -lR -installing to /tmp/workdir/kmc/old/kmc.Rcheck/00LOCK-kmc/00new/kmc/libs -** R -** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘emplik’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Execution halted -ERROR: lazy loading failed for package ‘kmc’ -* removing ‘/tmp/workdir/kmc/old/kmc.Rcheck/kmc’ - - -``` -# KMunicate - -
- -* Version: 0.2.5 -* GitHub: https://github.com/ellessenne/KMunicate-package -* Source code: https://github.com/cran/KMunicate -* Date/Publication: 2024-05-16 11:50:08 UTC -* Number of recursive dependencies: 171 - -Run `revdepcheck::cloud_details(, "KMunicate")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/KMunicate/new/KMunicate.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘KMunicate/DESCRIPTION’ ... OK -... -* checking for unstated dependencies in ‘tests’ ... OK -* checking tests ... OK - Running ‘testthat.R’ -* checking for unstated dependencies in vignettes ... OK -* checking package vignettes in ‘inst/doc’ ... OK -* checking running R code from vignettes ... OK - ‘KMunicate.Rmd’ using ‘UTF-8’... OK -* checking re-building of vignette outputs ... OK -* DONE -Status: OK - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/KMunicate/old/KMunicate.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘KMunicate/DESCRIPTION’ ... OK -... -* checking for unstated dependencies in ‘tests’ ... OK -* checking tests ... OK - Running ‘testthat.R’ -* checking for unstated dependencies in vignettes ... OK -* checking package vignettes in ‘inst/doc’ ... OK -* checking running R code from vignettes ... OK - ‘KMunicate.Rmd’ using ‘UTF-8’... OK -* checking re-building of vignette outputs ... OK -* DONE -Status: OK - - - - - -``` -# Landmarking - -
- -* Version: 1.0.0 -* GitHub: https://github.com/isobelbarrott/Landmarking -* Source code: https://github.com/cran/Landmarking -* Date/Publication: 2022-02-15 20:00:07 UTC -* Number of recursive dependencies: 122 - -Run `revdepcheck::cloud_details(, "Landmarking")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/Landmarking/new/Landmarking.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘Landmarking/DESCRIPTION’ ... OK -... -* this is package ‘Landmarking’ version ‘1.0.0’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘riskRegression’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/Landmarking/old/Landmarking.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘Landmarking/DESCRIPTION’ ... OK -... -* this is package ‘Landmarking’ version ‘1.0.0’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘riskRegression’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -# lavaSearch2 - -
- -* Version: 2.0.3 -* GitHub: https://github.com/bozenne/lavaSearch2 -* Source code: https://github.com/cran/lavaSearch2 -* Date/Publication: 2024-02-23 09:10:02 UTC -* Number of recursive dependencies: 146 - -Run `revdepcheck::cloud_details(, "lavaSearch2")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/lavaSearch2/new/lavaSearch2.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘lavaSearch2/DESCRIPTION’ ... OK -... - [ FAIL 1 | WARN 1 | SKIP 0 | PASS 266 ] - Error: Test failures - Execution halted -* checking for unstated dependencies in vignettes ... OK -* checking package vignettes in ‘inst/doc’ ... OK -* checking running R code from vignettes ... NONE - ‘overview.pdf.asis’ using ‘UTF-8’... OK -* checking re-building of vignette outputs ... OK -* DONE -Status: 1 ERROR, 1 NOTE - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/lavaSearch2/old/lavaSearch2.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘lavaSearch2/DESCRIPTION’ ... OK -... - [ FAIL 1 | WARN 1 | SKIP 0 | PASS 266 ] - Error: Test failures - Execution halted -* checking for unstated dependencies in vignettes ... OK -* checking package vignettes in ‘inst/doc’ ... OK -* checking running R code from vignettes ... NONE - ‘overview.pdf.asis’ using ‘UTF-8’... OK -* checking re-building of vignette outputs ... OK -* DONE -Status: 1 ERROR, 1 NOTE - - - - - -``` -# lnmixsurv - -
- -* Version: 3.1.6 -* GitHub: NA -* Source code: https://github.com/cran/lnmixsurv -* Date/Publication: 2024-09-03 15:20:08 UTC -* Number of recursive dependencies: 195 - -Run `revdepcheck::cloud_details(, "lnmixsurv")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/lnmixsurv/new/lnmixsurv.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘lnmixsurv/DESCRIPTION’ ... OK -... -* checking package vignettes in ‘inst/doc’ ... OK -* checking running R code from vignettes ... OK - ‘compare.Rmd’ using ‘UTF-8’... OK - ‘expectation_maximization.Rmd’ using ‘UTF-8’... OK - ‘intercept_only.Rmd’ using ‘UTF-8’... OK - ‘lnmixsurv.Rmd’ using ‘UTF-8’... OK - ‘parallel_computation.Rmd’ using ‘UTF-8’... OK -* checking re-building of vignette outputs ... OK -* DONE -Status: 4 NOTEs - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/lnmixsurv/old/lnmixsurv.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘lnmixsurv/DESCRIPTION’ ... OK -... -* checking package vignettes in ‘inst/doc’ ... OK -* checking running R code from vignettes ... OK - ‘compare.Rmd’ using ‘UTF-8’... OK - ‘expectation_maximization.Rmd’ using ‘UTF-8’... OK - ‘intercept_only.Rmd’ using ‘UTF-8’... OK - ‘lnmixsurv.Rmd’ using ‘UTF-8’... OK - ‘parallel_computation.Rmd’ using ‘UTF-8’... OK -* checking re-building of vignette outputs ... OK -* DONE -Status: 4 NOTEs - - - - - -``` -# locpolExpectile - -
- -* Version: 0.1.1 -* GitHub: NA -* Source code: https://github.com/cran/locpolExpectile -* Date/Publication: 2021-08-03 09:50:05 UTC -* Number of recursive dependencies: 70 - -Run `revdepcheck::cloud_details(, "locpolExpectile")` for more info - -
- -## In both - -* checking whether package ‘locpolExpectile’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/locpolExpectile/new/locpolExpectile.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘locpolExpectile’ ... -** package ‘locpolExpectile’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘locpolExpectile’ -* removing ‘/tmp/workdir/locpolExpectile/new/locpolExpectile.Rcheck/locpolExpectile’ - - -``` -### CRAN - -``` -* installing *source* package ‘locpolExpectile’ ... -** package ‘locpolExpectile’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘locpolExpectile’ -* removing ‘/tmp/workdir/locpolExpectile/old/locpolExpectile.Rcheck/locpolExpectile’ - - -``` -# loon.shiny - -
- -* Version: 1.0.3 -* GitHub: NA -* Source code: https://github.com/cran/loon.shiny -* Date/Publication: 2022-10-08 15:30:02 UTC -* Number of recursive dependencies: 136 - -Run `revdepcheck::cloud_details(, "loon.shiny")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/loon.shiny/new/loon.shiny.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘loon.shiny/DESCRIPTION’ ... OK -... -* this is package ‘loon.shiny’ version ‘1.0.3’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Packages required but not available: 'loon', 'loon.ggplot' - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/loon.shiny/old/loon.shiny.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘loon.shiny/DESCRIPTION’ ... OK -... -* this is package ‘loon.shiny’ version ‘1.0.3’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Packages required but not available: 'loon', 'loon.ggplot' - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -# loon.tourr - -
- -* Version: 0.1.4 -* GitHub: https://github.com/z267xu/loon.tourr -* Source code: https://github.com/cran/loon.tourr -* Date/Publication: 2024-04-09 09:40:02 UTC -* Number of recursive dependencies: 127 - -Run `revdepcheck::cloud_details(, "loon.tourr")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/loon.tourr/new/loon.tourr.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘loon.tourr/DESCRIPTION’ ... OK -... -* this is package ‘loon.tourr’ version ‘0.1.4’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Packages required but not available: 'loon', 'loon.ggplot' - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/loon.tourr/old/loon.tourr.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘loon.tourr/DESCRIPTION’ ... OK -... -* this is package ‘loon.tourr’ version ‘0.1.4’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Packages required but not available: 'loon', 'loon.ggplot' - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -# lsirm12pl - -
- -* Version: 1.3.3 -* GitHub: NA -* Source code: https://github.com/cran/lsirm12pl -* Date/Publication: 2024-08-28 23:00:02 UTC -* Number of recursive dependencies: 123 - -Run `revdepcheck::cloud_details(, "lsirm12pl")` for more info - -
- -## In both - -* checking whether package ‘lsirm12pl’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/lsirm12pl/new/lsirm12pl.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘lsirm12pl’ ... -** package ‘lsirm12pl’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c lsirm1pl.cpp -o lsirm1pl.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c lsirm2pl.cpp -o lsirm2pl.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c lsm.cpp -o lsm.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c utility_cpp.cpp -o utility_cpp.o -... -** R -** data -*** moving datasets to lazyload DB -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘lsirm12pl’ -* removing ‘/tmp/workdir/lsirm12pl/new/lsirm12pl.Rcheck/lsirm12pl’ - - -``` -### CRAN - -``` -* installing *source* package ‘lsirm12pl’ ... -** package ‘lsirm12pl’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c lsirm1pl.cpp -o lsirm1pl.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c lsirm2pl.cpp -o lsirm2pl.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c lsm.cpp -o lsm.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c utility_cpp.cpp -o utility_cpp.o -... -** R -** data -*** moving datasets to lazyload DB -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘lsirm12pl’ -* removing ‘/tmp/workdir/lsirm12pl/old/lsirm12pl.Rcheck/lsirm12pl’ - - -``` -# marlod - -
- -* Version: 0.1.1 -* GitHub: NA -* Source code: https://github.com/cran/marlod -* Date/Publication: 2024-08-27 22:00:02 UTC -* Number of recursive dependencies: 106 - -Run `revdepcheck::cloud_details(, "marlod")` for more info - -
- -## In both - -* checking whether package ‘marlod’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/marlod/new/marlod.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘marlod’ ... -** package ‘marlod’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘marlod’ -* removing ‘/tmp/workdir/marlod/new/marlod.Rcheck/marlod’ - - -``` -### CRAN - -``` -* installing *source* package ‘marlod’ ... -** package ‘marlod’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘marlod’ -* removing ‘/tmp/workdir/marlod/old/marlod.Rcheck/marlod’ - - -``` -# mbsts - -
- -* Version: 3.0 -* GitHub: NA -* Source code: https://github.com/cran/mbsts -* Date/Publication: 2023-01-07 01:10:02 UTC -* Number of recursive dependencies: 81 - -Run `revdepcheck::cloud_details(, "mbsts")` for more info - -
- -## In both - -* checking whether package ‘mbsts’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/mbsts/new/mbsts.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘mbsts’ ... -** package ‘mbsts’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘mbsts’ -* removing ‘/tmp/workdir/mbsts/new/mbsts.Rcheck/mbsts’ - - -``` -### CRAN - -``` -* installing *source* package ‘mbsts’ ... -** package ‘mbsts’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘mbsts’ -* removing ‘/tmp/workdir/mbsts/old/mbsts.Rcheck/mbsts’ - - -``` -# metajam - -
- -* Version: 0.3.1 -* GitHub: https://github.com/NCEAS/metajam -* Source code: https://github.com/cran/metajam -* Date/Publication: 2024-08-16 17:50:02 UTC -* Number of recursive dependencies: 90 - -Run `revdepcheck::cloud_details(, "metajam")` for more info - -
- -## In both - -* checking whether package ‘metajam’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/metajam/new/metajam.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘metajam’ ... -** package ‘metajam’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Error in dyn.load(file, DLLpath = DLLpath, ...) : - unable to load shared object '/usr/local/lib/R/site-library/redland/libs/redland.so': - librdf.so.0: cannot open shared object file: No such file or directory -Calls: ... namespaceImport -> loadNamespace -> library.dynam -> dyn.load -Execution halted -ERROR: lazy loading failed for package ‘metajam’ -* removing ‘/tmp/workdir/metajam/new/metajam.Rcheck/metajam’ - - -``` -### CRAN - -``` -* installing *source* package ‘metajam’ ... -** package ‘metajam’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Error in dyn.load(file, DLLpath = DLLpath, ...) : - unable to load shared object '/usr/local/lib/R/site-library/redland/libs/redland.so': - librdf.so.0: cannot open shared object file: No such file or directory -Calls: ... namespaceImport -> loadNamespace -> library.dynam -> dyn.load -Execution halted -ERROR: lazy loading failed for package ‘metajam’ -* removing ‘/tmp/workdir/metajam/old/metajam.Rcheck/metajam’ - - -``` -# mHMMbayes - -
- -* Version: 1.1.0 -* GitHub: https://github.com/emmekeaarts/mHMMbayes -* Source code: https://github.com/cran/mHMMbayes -* Date/Publication: 2024-04-01 12:20:02 UTC -* Number of recursive dependencies: 57 - -Run `revdepcheck::cloud_details(, "mHMMbayes")` for more info - -
- -## In both - -* checking whether package ‘mHMMbayes’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/mHMMbayes/new/mHMMbayes.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘mHMMbayes’ ... -** package ‘mHMMbayes’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c cat_mult_fw_cpp.cpp -o cat_mult_fw_cpp.o -g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o mHMMbayes.so RcppExports.o cat_mult_fw_cpp.o -L/opt/R/4.3.1/lib/R/lib -lR -installing to /tmp/workdir/mHMMbayes/new/mHMMbayes.Rcheck/00LOCK-mHMMbayes/00new/mHMMbayes/libs -** R -... -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘mHMMbayes’ -* removing ‘/tmp/workdir/mHMMbayes/new/mHMMbayes.Rcheck/mHMMbayes’ - - -``` -### CRAN - -``` -* installing *source* package ‘mHMMbayes’ ... -** package ‘mHMMbayes’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c cat_mult_fw_cpp.cpp -o cat_mult_fw_cpp.o -g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o mHMMbayes.so RcppExports.o cat_mult_fw_cpp.o -L/opt/R/4.3.1/lib/R/lib -lR -installing to /tmp/workdir/mHMMbayes/old/mHMMbayes.Rcheck/00LOCK-mHMMbayes/00new/mHMMbayes/libs -** R -... -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘mHMMbayes’ -* removing ‘/tmp/workdir/mHMMbayes/old/mHMMbayes.Rcheck/mHMMbayes’ - - -``` -# midasr - -
- -* Version: 0.8 -* GitHub: https://github.com/mpiktas/midasr -* Source code: https://github.com/cran/midasr -* Date/Publication: 2021-02-23 09:40:05 UTC -* Number of recursive dependencies: 80 - -Run `revdepcheck::cloud_details(, "midasr")` for more info - -
- -## In both - -* checking whether package ‘midasr’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/midasr/new/midasr.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘midasr’ ... -** package ‘midasr’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -** demo -** inst -** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘quantreg’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Execution halted -ERROR: lazy loading failed for package ‘midasr’ -* removing ‘/tmp/workdir/midasr/new/midasr.Rcheck/midasr’ - - -``` -### CRAN - -``` -* installing *source* package ‘midasr’ ... -** package ‘midasr’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -** demo -** inst -** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘quantreg’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Execution halted -ERROR: lazy loading failed for package ‘midasr’ -* removing ‘/tmp/workdir/midasr/old/midasr.Rcheck/midasr’ - - -``` -# miWQS - -
- -* Version: 0.4.4 -* GitHub: https://github.com/phargarten2/miWQS -* Source code: https://github.com/cran/miWQS -* Date/Publication: 2021-04-02 21:50:02 UTC -* Number of recursive dependencies: 148 - -Run `revdepcheck::cloud_details(, "miWQS")` for more info - -
- -## In both - -* checking whether package ‘miWQS’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/miWQS/new/miWQS.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘miWQS’ ... -** package ‘miWQS’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘miWQS’ -* removing ‘/tmp/workdir/miWQS/new/miWQS.Rcheck/miWQS’ - - -``` -### CRAN - -``` -* installing *source* package ‘miWQS’ ... -** package ‘miWQS’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘miWQS’ -* removing ‘/tmp/workdir/miWQS/old/miWQS.Rcheck/miWQS’ - - -``` -# mixAR - -
- -* Version: 0.22.8 -* GitHub: https://github.com/GeoBosh/mixAR -* Source code: https://github.com/cran/mixAR -* Date/Publication: 2023-12-19 01:40:02 UTC -* Number of recursive dependencies: 96 - -Run `revdepcheck::cloud_details(, "mixAR")` for more info - -
- -## In both - -* checking whether package ‘mixAR’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/mixAR/new/mixAR.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘mixAR’ ... -** package ‘mixAR’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘mixAR’ -* removing ‘/tmp/workdir/mixAR/new/mixAR.Rcheck/mixAR’ - - -``` -### CRAN - -``` -* installing *source* package ‘mixAR’ ... -** package ‘mixAR’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘mixAR’ -* removing ‘/tmp/workdir/mixAR/old/mixAR.Rcheck/mixAR’ - - -``` -# mlmts - -
- -* Version: 1.1.2 -* GitHub: NA -* Source code: https://github.com/cran/mlmts -* Date/Publication: 2024-08-18 08:40:06 UTC -* Number of recursive dependencies: 241 - -Run `revdepcheck::cloud_details(, "mlmts")` for more info - -
- -## In both - -* checking whether package ‘mlmts’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/mlmts/new/mlmts.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘mlmts’ ... -** package ‘mlmts’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error : package or namespace load failed for ‘quantspec’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Error: unable to load R code in package ‘mlmts’ -Execution halted -ERROR: lazy loading failed for package ‘mlmts’ -* removing ‘/tmp/workdir/mlmts/new/mlmts.Rcheck/mlmts’ - - -``` -### CRAN - -``` -* installing *source* package ‘mlmts’ ... -** package ‘mlmts’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error : package or namespace load failed for ‘quantspec’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Error: unable to load R code in package ‘mlmts’ -Execution halted -ERROR: lazy loading failed for package ‘mlmts’ -* removing ‘/tmp/workdir/mlmts/old/mlmts.Rcheck/mlmts’ - - -``` -# mlr - -
- -* Version: 2.19.2 -* GitHub: https://github.com/mlr-org/mlr -* Source code: https://github.com/cran/mlr -* Date/Publication: 2024-06-12 10:50:02 UTC -* Number of recursive dependencies: 361 - -Run `revdepcheck::cloud_details(, "mlr")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/mlr/new/mlr.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘mlr/DESCRIPTION’ ... OK -... -* checking for unstated dependencies in ‘tests’ ... OK -* checking tests ... OK - Running ‘testthat.R’ -* checking for unstated dependencies in vignettes ... OK -* checking package vignettes in ‘inst/doc’ ... OK -* checking running R code from vignettes ... OK - ‘mlr.Rmd’ using ‘UTF-8’... OK -* checking re-building of vignette outputs ... OK -* DONE -Status: 2 NOTEs - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/mlr/old/mlr.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘mlr/DESCRIPTION’ ... OK -... -* checking for unstated dependencies in ‘tests’ ... OK -* checking tests ... OK - Running ‘testthat.R’ -* checking for unstated dependencies in vignettes ... OK -* checking package vignettes in ‘inst/doc’ ... OK -* checking running R code from vignettes ... OK - ‘mlr.Rmd’ using ‘UTF-8’... OK -* checking re-building of vignette outputs ... OK -* DONE -Status: 2 NOTEs - - - - - -``` -# modeLLtest - -
- -* Version: 1.0.4 -* GitHub: https://github.com/ShanaScogin/modeLLtest -* Source code: https://github.com/cran/modeLLtest -* Date/Publication: 2022-05-05 23:20:17 UTC -* Number of recursive dependencies: 51 - -Run `revdepcheck::cloud_details(, "modeLLtest")` for more info - -
- -## In both - -* checking whether package ‘modeLLtest’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/modeLLtest/new/modeLLtest.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘modeLLtest’ ... -** package ‘modeLLtest’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -using C++11 -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c cvll_mr.cpp -o cvll_mr.o -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c cvll_ols.cpp -o cvll_ols.o -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c cvll_rlm_m.cpp -o cvll_rlm_m.o -... -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘modeLLtest’ -* removing ‘/tmp/workdir/modeLLtest/new/modeLLtest.Rcheck/modeLLtest’ - - -``` -### CRAN - -``` -* installing *source* package ‘modeLLtest’ ... -** package ‘modeLLtest’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -using C++11 -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c cvll_mr.cpp -o cvll_mr.o -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c cvll_ols.cpp -o cvll_ols.o -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c cvll_rlm_m.cpp -o cvll_rlm_m.o -... -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘modeLLtest’ -* removing ‘/tmp/workdir/modeLLtest/old/modeLLtest.Rcheck/modeLLtest’ - - -``` -# multilevelmediation - -
- -* Version: 0.3.1 -* GitHub: https://github.com/falkcarl/multilevelmediation -* Source code: https://github.com/cran/multilevelmediation -* Date/Publication: 2024-02-29 11:50:05 UTC -* Number of recursive dependencies: 97 - -Run `revdepcheck::cloud_details(, "multilevelmediation")` for more info - -
- -## In both - -* checking whether package ‘multilevelmediation’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/multilevelmediation/new/multilevelmediation.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘multilevelmediation’ ... -** package ‘multilevelmediation’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘multilevelmediation’ -* removing ‘/tmp/workdir/multilevelmediation/new/multilevelmediation.Rcheck/multilevelmediation’ - - -``` -### CRAN - -``` -* installing *source* package ‘multilevelmediation’ ... -** package ‘multilevelmediation’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘multilevelmediation’ -* removing ‘/tmp/workdir/multilevelmediation/old/multilevelmediation.Rcheck/multilevelmediation’ - - -``` -# multilevelTools - -
- -* Version: 0.1.1 -* GitHub: https://github.com/JWiley/multilevelTools -* Source code: https://github.com/cran/multilevelTools -* Date/Publication: 2020-03-04 09:50:02 UTC -* Number of recursive dependencies: 167 - -Run `revdepcheck::cloud_details(, "multilevelTools")` for more info - -
- -## In both - -* checking whether package ‘multilevelTools’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/multilevelTools/new/multilevelTools.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘multilevelTools’ ... -** package ‘multilevelTools’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Warning in check_dep_version() : - ABI version mismatch: -lme4 was built with Matrix ABI version 1 -Current Matrix ABI version is 0 -Please re-install lme4 from source or restore original ‘Matrix’ package -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘multilevelTools’ -* removing ‘/tmp/workdir/multilevelTools/new/multilevelTools.Rcheck/multilevelTools’ - - -``` -### CRAN - -``` -* installing *source* package ‘multilevelTools’ ... -** package ‘multilevelTools’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Warning in check_dep_version() : - ABI version mismatch: -lme4 was built with Matrix ABI version 1 -Current Matrix ABI version is 0 -Please re-install lme4 from source or restore original ‘Matrix’ package -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘multilevelTools’ -* removing ‘/tmp/workdir/multilevelTools/old/multilevelTools.Rcheck/multilevelTools’ - - -``` -# NCA - -
- -* Version: 4.0.1 -* GitHub: NA -* Source code: https://github.com/cran/NCA -* Date/Publication: 2024-02-23 09:30:15 UTC -* Number of recursive dependencies: 98 - -Run `revdepcheck::cloud_details(, "NCA")` for more info - -
- -## In both - -* checking whether package ‘NCA’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/NCA/new/NCA.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘NCA’ ... -** package ‘NCA’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘NCA’ -* removing ‘/tmp/workdir/NCA/new/NCA.Rcheck/NCA’ - - -``` -### CRAN - -``` -* installing *source* package ‘NCA’ ... -** package ‘NCA’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘NCA’ -* removing ‘/tmp/workdir/NCA/old/NCA.Rcheck/NCA’ - - -``` -# netcmc - -
- -* Version: 1.0.2 -* GitHub: NA -* Source code: https://github.com/cran/netcmc -* Date/Publication: 2022-11-08 22:30:15 UTC -* Number of recursive dependencies: 60 - -Run `revdepcheck::cloud_details(, "netcmc")` for more info - -
- -## In both - -* checking whether package ‘netcmc’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/netcmc/new/netcmc.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘netcmc’ ... -** package ‘netcmc’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -using C++11 -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I'/usr/local/lib/R/site-library/RcppProgress/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I'/usr/local/lib/R/site-library/RcppProgress/include' -I/usr/local/include -fpic -g -O2 -c choleskyDecompositionRcppConversion.cpp -o choleskyDecompositionRcppConversion.o -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I'/usr/local/lib/R/site-library/RcppProgress/include' -I/usr/local/include -fpic -g -O2 -c doubleMatrixMultiplicationRcpp.cpp -o doubleMatrixMultiplicationRcpp.o -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I'/usr/local/lib/R/site-library/RcppProgress/include' -I/usr/local/include -fpic -g -O2 -c doubleVectorMultiplicationRcpp.cpp -o doubleVectorMultiplicationRcpp.o -... -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I'/usr/local/lib/R/site-library/RcppProgress/include' -I/usr/local/include -fpic -g -O2 -c vectorVectorTransposeMultiplicationRcpp.cpp -o vectorVectorTransposeMultiplicationRcpp.o -g++ -std=gnu++11 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o netcmc.so RcppExports.o choleskyDecompositionRcppConversion.o doubleMatrixMultiplicationRcpp.o doubleVectorMultiplicationRcpp.o eigenValuesRcppConversion.o getDiagonalMatrix.o getExp.o getExpDividedByOnePlusExp.o getMeanCenteredRandomEffects.o getMultivariateBinomialNetworkLerouxDIC.o getMultivariateBinomialNetworkLerouxFittedValuesAndLikelihoodForDICEveryIteration.o getMultivariateGaussianNetworkLerouxDIC.o getMultivariateGaussianNetworkLerouxFittedValuesAndLikelihoodForDICEveryIteration.o getMultivariatePoissonNetworkLerouxDIC.o getMultivariatePoissonNetworkLerouxFittedValuesAndLikelihoodForDICEveryIteration.o getNonZeroEntries.o getSubvector.o getSubvectorIndecies.o getSumExpNetwork.o getSumExpNetworkIndecies.o getSumExpNetworkLeroux.o getSumExpNetworkLerouxIndecies.o getSumLogExp.o getSumLogExpIndecies.o getSumVector.o getTripletForm.o getUnivariateBinomialNetworkLerouxDIC.o getUnivariateBinomialNetworkLerouxFittedValuesAndLikelihoodForDICEveryIteration.o getUnivariateGaussianNetworkLerouxDIC.o getUnivariateGaussianNetworkLerouxFittedValuesAndLikelihoodForDICEveryIteration.o getUnivariatePoissonNetworkDIC.o getUnivariatePoissonNetworkFittedValuesAndLikelihoodForDICEveryIteration.o getUnivariatePoissonNetworkLerouxDIC.o getUnivariatePoissonNetworkLerouxFittedValuesAndLikelihoodForDICEveryIteration.o getVectorMean.o matrixInverseRcppConversion.o matrixMatrixAdditionRcpp.o matrixMatrixSubtractionRcpp.o matrixVectorMultiplicationRcpp.o multivariateBinomialNetworkLerouxAllUpdate.o multivariateBinomialNetworkLerouxBetaUpdate.o multivariateBinomialNetworkLerouxRhoUpdate.o multivariateBinomialNetworkLerouxSingleUpdate.o multivariateBinomialNetworkLerouxSpatialRandomEffectsUpdate.o multivariateBinomialNetworkLerouxTauSquaredUpdate.o multivariateBinomialNetworkLerouxURandomEffectsUpdate.o multivariateBinomialNetworkLerouxVRandomEffectsUpdate.o multivariateBinomialNetworkLerouxVarianceCovarianceUUpdate.o multivariateBinomialNetworkRandAllUpdate.o multivariateBinomialNetworkRandSingleUpdate.o multivariateGaussianNetworkLerouxAllMHUpdate.o multivariateGaussianNetworkLerouxBetaUpdate.o multivariateGaussianNetworkLerouxRhoUpdate.o multivariateGaussianNetworkLerouxSigmaSquaredEUpdate.o multivariateGaussianNetworkLerouxSingleMHUpdate.o multivariateGaussianNetworkLerouxSpatialRandomEffectsMHUpdate.o multivariateGaussianNetworkLerouxTauSquaredUpdate.o multivariateGaussianNetworkLerouxURandomEffectsUpdate.o multivariateGaussianNetworkLerouxVarianceCovarianceUUpdate.o multivariateGaussianNetworkRandAllUpdate.o multivariateGaussianNetworkRandSingleUpdate.o multivariateGaussianNetworkRandVRandomEffectsUpdate.o multivariatePoissonNetworkLerouxAllUpdate.o multivariatePoissonNetworkLerouxBetaUpdate.o multivariatePoissonNetworkLerouxRhoUpdate.o multivariatePoissonNetworkLerouxSingleUpdate.o multivariatePoissonNetworkLerouxSpatialRandomEffectsUpdate.o multivariatePoissonNetworkLerouxTauSquaredUpdate.o multivariatePoissonNetworkLerouxURandomEffectsUpdate.o multivariatePoissonNetworkLerouxVRandomEffectsUpdate.o multivariatePoissonNetworkLerouxVarianceCovarianceUUpdate.o multivariatePoissonNetworkRandAllUpdate.o multivariatePoissonNetworkRandSingleUpdate.o sumMatrix.o univariateBinomialNetworkLerouxAllUpdate.o univariateBinomialNetworkLerouxBetaUpdate.o univariateBinomialNetworkLerouxRhoUpdate.o univariateBinomialNetworkLerouxSigmaSquaredUpdate.o univariateBinomialNetworkLerouxSingleUpdate.o univariateBinomialNetworkLerouxSpatialRandomEffectsUpdate.o univariateBinomialNetworkLerouxTauSquaredUpdate.o univariateBinomialNetworkLerouxURandomEffectsUpdate.o univariateGaussianNetworkLerouxAllMHUpdate.o univariateGaussianNetworkLerouxBetaUpdate.o univariateGaussianNetworkLerouxRhoUpdate.o univariateGaussianNetworkLerouxSigmaSquaredEUpdate.o univariateGaussianNetworkLerouxSigmaSquaredUUpdate.o univariateGaussianNetworkLerouxSingleMHUpdate.o univariateGaussianNetworkLerouxSpatialRandomEffectsMHUpdate.o univariateGaussianNetworkLerouxTauSquaredUpdate.o univariateGaussianNetworkLerouxURandomEffectsUpdate.o univariatePoissonNetworkLerouxAllUpdate.o univariatePoissonNetworkLerouxBetaUpdate.o univariatePoissonNetworkLerouxRhoUpdate.o univariatePoissonNetworkLerouxSigmaSquaredUpdate.o univariatePoissonNetworkLerouxSingleUpdate.o univariatePoissonNetworkLerouxSpatialRandomEffectsUpdate.o univariatePoissonNetworkLerouxTauSquaredUpdate.o univariatePoissonNetworkLerouxURandomEffectsUpdate.o vectorTransposeVectorMultiplicationRcpp.o vectorVectorTransposeMultiplicationRcpp.o -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR -installing to /tmp/workdir/netcmc/new/netcmc.Rcheck/00LOCK-netcmc/00new/netcmc/libs -** R -** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘MCMCpack’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Execution halted -ERROR: lazy loading failed for package ‘netcmc’ -* removing ‘/tmp/workdir/netcmc/new/netcmc.Rcheck/netcmc’ - - -``` -### CRAN - -``` -* installing *source* package ‘netcmc’ ... -** package ‘netcmc’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -using C++11 -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I'/usr/local/lib/R/site-library/RcppProgress/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I'/usr/local/lib/R/site-library/RcppProgress/include' -I/usr/local/include -fpic -g -O2 -c choleskyDecompositionRcppConversion.cpp -o choleskyDecompositionRcppConversion.o -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I'/usr/local/lib/R/site-library/RcppProgress/include' -I/usr/local/include -fpic -g -O2 -c doubleMatrixMultiplicationRcpp.cpp -o doubleMatrixMultiplicationRcpp.o -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I'/usr/local/lib/R/site-library/RcppProgress/include' -I/usr/local/include -fpic -g -O2 -c doubleVectorMultiplicationRcpp.cpp -o doubleVectorMultiplicationRcpp.o -... -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I'/usr/local/lib/R/site-library/RcppProgress/include' -I/usr/local/include -fpic -g -O2 -c vectorVectorTransposeMultiplicationRcpp.cpp -o vectorVectorTransposeMultiplicationRcpp.o -g++ -std=gnu++11 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o netcmc.so RcppExports.o choleskyDecompositionRcppConversion.o doubleMatrixMultiplicationRcpp.o doubleVectorMultiplicationRcpp.o eigenValuesRcppConversion.o getDiagonalMatrix.o getExp.o getExpDividedByOnePlusExp.o getMeanCenteredRandomEffects.o getMultivariateBinomialNetworkLerouxDIC.o getMultivariateBinomialNetworkLerouxFittedValuesAndLikelihoodForDICEveryIteration.o getMultivariateGaussianNetworkLerouxDIC.o getMultivariateGaussianNetworkLerouxFittedValuesAndLikelihoodForDICEveryIteration.o getMultivariatePoissonNetworkLerouxDIC.o getMultivariatePoissonNetworkLerouxFittedValuesAndLikelihoodForDICEveryIteration.o getNonZeroEntries.o getSubvector.o getSubvectorIndecies.o getSumExpNetwork.o getSumExpNetworkIndecies.o getSumExpNetworkLeroux.o getSumExpNetworkLerouxIndecies.o getSumLogExp.o getSumLogExpIndecies.o getSumVector.o getTripletForm.o getUnivariateBinomialNetworkLerouxDIC.o getUnivariateBinomialNetworkLerouxFittedValuesAndLikelihoodForDICEveryIteration.o getUnivariateGaussianNetworkLerouxDIC.o getUnivariateGaussianNetworkLerouxFittedValuesAndLikelihoodForDICEveryIteration.o getUnivariatePoissonNetworkDIC.o getUnivariatePoissonNetworkFittedValuesAndLikelihoodForDICEveryIteration.o getUnivariatePoissonNetworkLerouxDIC.o getUnivariatePoissonNetworkLerouxFittedValuesAndLikelihoodForDICEveryIteration.o getVectorMean.o matrixInverseRcppConversion.o matrixMatrixAdditionRcpp.o matrixMatrixSubtractionRcpp.o matrixVectorMultiplicationRcpp.o multivariateBinomialNetworkLerouxAllUpdate.o multivariateBinomialNetworkLerouxBetaUpdate.o multivariateBinomialNetworkLerouxRhoUpdate.o multivariateBinomialNetworkLerouxSingleUpdate.o multivariateBinomialNetworkLerouxSpatialRandomEffectsUpdate.o multivariateBinomialNetworkLerouxTauSquaredUpdate.o multivariateBinomialNetworkLerouxURandomEffectsUpdate.o multivariateBinomialNetworkLerouxVRandomEffectsUpdate.o multivariateBinomialNetworkLerouxVarianceCovarianceUUpdate.o multivariateBinomialNetworkRandAllUpdate.o multivariateBinomialNetworkRandSingleUpdate.o multivariateGaussianNetworkLerouxAllMHUpdate.o multivariateGaussianNetworkLerouxBetaUpdate.o multivariateGaussianNetworkLerouxRhoUpdate.o multivariateGaussianNetworkLerouxSigmaSquaredEUpdate.o multivariateGaussianNetworkLerouxSingleMHUpdate.o multivariateGaussianNetworkLerouxSpatialRandomEffectsMHUpdate.o multivariateGaussianNetworkLerouxTauSquaredUpdate.o multivariateGaussianNetworkLerouxURandomEffectsUpdate.o multivariateGaussianNetworkLerouxVarianceCovarianceUUpdate.o multivariateGaussianNetworkRandAllUpdate.o multivariateGaussianNetworkRandSingleUpdate.o multivariateGaussianNetworkRandVRandomEffectsUpdate.o multivariatePoissonNetworkLerouxAllUpdate.o multivariatePoissonNetworkLerouxBetaUpdate.o multivariatePoissonNetworkLerouxRhoUpdate.o multivariatePoissonNetworkLerouxSingleUpdate.o multivariatePoissonNetworkLerouxSpatialRandomEffectsUpdate.o multivariatePoissonNetworkLerouxTauSquaredUpdate.o multivariatePoissonNetworkLerouxURandomEffectsUpdate.o multivariatePoissonNetworkLerouxVRandomEffectsUpdate.o multivariatePoissonNetworkLerouxVarianceCovarianceUUpdate.o multivariatePoissonNetworkRandAllUpdate.o multivariatePoissonNetworkRandSingleUpdate.o sumMatrix.o univariateBinomialNetworkLerouxAllUpdate.o univariateBinomialNetworkLerouxBetaUpdate.o univariateBinomialNetworkLerouxRhoUpdate.o univariateBinomialNetworkLerouxSigmaSquaredUpdate.o univariateBinomialNetworkLerouxSingleUpdate.o univariateBinomialNetworkLerouxSpatialRandomEffectsUpdate.o univariateBinomialNetworkLerouxTauSquaredUpdate.o univariateBinomialNetworkLerouxURandomEffectsUpdate.o univariateGaussianNetworkLerouxAllMHUpdate.o univariateGaussianNetworkLerouxBetaUpdate.o univariateGaussianNetworkLerouxRhoUpdate.o univariateGaussianNetworkLerouxSigmaSquaredEUpdate.o univariateGaussianNetworkLerouxSigmaSquaredUUpdate.o univariateGaussianNetworkLerouxSingleMHUpdate.o univariateGaussianNetworkLerouxSpatialRandomEffectsMHUpdate.o univariateGaussianNetworkLerouxTauSquaredUpdate.o univariateGaussianNetworkLerouxURandomEffectsUpdate.o univariatePoissonNetworkLerouxAllUpdate.o univariatePoissonNetworkLerouxBetaUpdate.o univariatePoissonNetworkLerouxRhoUpdate.o univariatePoissonNetworkLerouxSigmaSquaredUpdate.o univariatePoissonNetworkLerouxSingleUpdate.o univariatePoissonNetworkLerouxSpatialRandomEffectsUpdate.o univariatePoissonNetworkLerouxTauSquaredUpdate.o univariatePoissonNetworkLerouxURandomEffectsUpdate.o vectorTransposeVectorMultiplicationRcpp.o vectorVectorTransposeMultiplicationRcpp.o -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR -installing to /tmp/workdir/netcmc/old/netcmc.Rcheck/00LOCK-netcmc/00new/netcmc/libs -** R -** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘MCMCpack’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Execution halted -ERROR: lazy loading failed for package ‘netcmc’ -* removing ‘/tmp/workdir/netcmc/old/netcmc.Rcheck/netcmc’ - - -``` -# newIMVC - -
- -* Version: 0.1.0 -* GitHub: NA -* Source code: https://github.com/cran/newIMVC -* Date/Publication: 2024-04-16 14:50:13 UTC -* Number of recursive dependencies: 54 - -Run `revdepcheck::cloud_details(, "newIMVC")` for more info - -
- -## In both - -* checking whether package ‘newIMVC’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/newIMVC/new/newIMVC.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘newIMVC’ ... -** package ‘newIMVC’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘newIMVC’ -* removing ‘/tmp/workdir/newIMVC/new/newIMVC.Rcheck/newIMVC’ - - -``` -### CRAN - -``` -* installing *source* package ‘newIMVC’ ... -** package ‘newIMVC’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘newIMVC’ -* removing ‘/tmp/workdir/newIMVC/old/newIMVC.Rcheck/newIMVC’ - - -``` -# nlpred - -
- -* Version: 1.0.1 -* GitHub: NA -* Source code: https://github.com/cran/nlpred -* Date/Publication: 2020-02-23 17:30:05 UTC -* Number of recursive dependencies: 103 - -Run `revdepcheck::cloud_details(, "nlpred")` for more info - -
- -## In both - -* checking whether package ‘nlpred’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/nlpred/new/nlpred.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘nlpred’ ... -** package ‘nlpred’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘nlpred’ -* removing ‘/tmp/workdir/nlpred/new/nlpred.Rcheck/nlpred’ - - -``` -### CRAN - -``` -* installing *source* package ‘nlpred’ ... -** package ‘nlpred’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘nlpred’ -* removing ‘/tmp/workdir/nlpred/old/nlpred.Rcheck/nlpred’ - - -``` -# NMADiagT - -
- -* Version: 0.1.2 -* GitHub: NA -* Source code: https://github.com/cran/NMADiagT -* Date/Publication: 2020-02-26 07:00:02 UTC -* Number of recursive dependencies: 78 - -Run `revdepcheck::cloud_details(, "NMADiagT")` for more info - -
- -## In both - -* checking whether package ‘NMADiagT’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/NMADiagT/new/NMADiagT.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘NMADiagT’ ... -** package ‘NMADiagT’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘NMADiagT’ -* removing ‘/tmp/workdir/NMADiagT/new/NMADiagT.Rcheck/NMADiagT’ - - -``` -### CRAN - -``` -* installing *source* package ‘NMADiagT’ ... -** package ‘NMADiagT’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘NMADiagT’ -* removing ‘/tmp/workdir/NMADiagT/old/NMADiagT.Rcheck/NMADiagT’ - - -``` -# nse - -
- -* Version: 1.21 -* GitHub: https://github.com/keblu/nse -* Source code: https://github.com/cran/nse -* Date/Publication: 2022-11-10 13:20:02 UTC -* Number of recursive dependencies: 44 - -Run `revdepcheck::cloud_details(, "nse")` for more info - -
- -## In both - -* checking whether package ‘nse’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/nse/new/nse.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘nse’ ... -** package ‘nse’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c f_boot.cpp -o f_boot.o -g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o nse.so RcppExports.o f_boot.o -L/opt/R/4.3.1/lib/R/lib -lR -installing to /tmp/workdir/nse/new/nse.Rcheck/00LOCK-nse/00new/nse/libs -** R -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘nse’ -* removing ‘/tmp/workdir/nse/new/nse.Rcheck/nse’ - - -``` -### CRAN - -``` -* installing *source* package ‘nse’ ... -** package ‘nse’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c f_boot.cpp -o f_boot.o -g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o nse.so RcppExports.o f_boot.o -L/opt/R/4.3.1/lib/R/lib -lR -installing to /tmp/workdir/nse/old/nse.Rcheck/00LOCK-nse/00new/nse/libs -** R -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘nse’ -* removing ‘/tmp/workdir/nse/old/nse.Rcheck/nse’ - - -``` -# OasisR - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/OasisR -* Number of recursive dependencies: 44 - -Run `revdepcheck::cloud_details(, "OasisR")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# paleopop - -
- -* Version: 2.1.6 -* GitHub: https://github.com/GlobalEcologyLab/paleopop -* Source code: https://github.com/cran/paleopop -* Date/Publication: 2024-09-24 19:00:02 UTC -* Number of recursive dependencies: 102 - -Run `revdepcheck::cloud_details(, "paleopop")` for more info - -
- -## In both - -* checking whether package ‘paleopop’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/paleopop/new/paleopop.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘paleopop’ ... -** package ‘paleopop’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘paleopop’ -* removing ‘/tmp/workdir/paleopop/new/paleopop.Rcheck/paleopop’ - - -``` -### CRAN - -``` -* installing *source* package ‘paleopop’ ... -** package ‘paleopop’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘paleopop’ -* removing ‘/tmp/workdir/paleopop/old/paleopop.Rcheck/paleopop’ - - -``` -# pammtools - -
- -* Version: 0.5.93 -* GitHub: https://github.com/adibender/pammtools -* Source code: https://github.com/cran/pammtools -* Date/Publication: 2024-02-25 10:10:02 UTC -* Number of recursive dependencies: 124 - -Run `revdepcheck::cloud_details(, "pammtools")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/pammtools/new/pammtools.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘pammtools/DESCRIPTION’ ... OK -... -* checking data for non-ASCII characters ... OK -* checking LazyData ... OK -* checking data for ASCII and uncompressed saves ... OK -* checking R/sysdata.rda ... OK -* checking examples ... OK -* checking for unstated dependencies in ‘tests’ ... OK -* checking tests ... OK - Running ‘testthat.R’ -* DONE -Status: OK - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/pammtools/old/pammtools.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘pammtools/DESCRIPTION’ ... OK -... -* checking data for non-ASCII characters ... OK -* checking LazyData ... OK -* checking data for ASCII and uncompressed saves ... OK -* checking R/sysdata.rda ... OK -* checking examples ... OK -* checking for unstated dependencies in ‘tests’ ... OK -* checking tests ... OK - Running ‘testthat.R’ -* DONE -Status: OK - - - - - -``` -# params - -
- -* Version: 0.7.3 -* GitHub: https://github.com/sahilseth/params -* Source code: https://github.com/cran/params -* Date/Publication: 2021-03-01 20:00:06 UTC -* Number of recursive dependencies: 0 - -Run `revdepcheck::cloud_details(, "params")` for more info - -
- -## In both - -* checking whether package ‘params’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/params/new/params.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘params’ ... -** package ‘params’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -** help -*** installing help indices -** building package indices -** testing if installed package can be loaded from temporary location -Error: package or namespace load failed for ‘params’: - .onLoad failed in loadNamespace() for 'params', details: - call: glue_data(.x = NULL, ..., .sep = .sep, .envir = .envir, .open = .open, - error: is.environment(.envir) is not TRUE -Error: loading failed -Execution halted -ERROR: loading failed -* removing ‘/tmp/workdir/params/new/params.Rcheck/params’ - - -``` -### CRAN - -``` -* installing *source* package ‘params’ ... -** package ‘params’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -** help -*** installing help indices -** building package indices -** testing if installed package can be loaded from temporary location -Error: package or namespace load failed for ‘params’: - .onLoad failed in loadNamespace() for 'params', details: - call: glue_data(.x = NULL, ..., .sep = .sep, .envir = .envir, .open = .open, - error: is.environment(.envir) is not TRUE -Error: loading failed -Execution halted -ERROR: loading failed -* removing ‘/tmp/workdir/params/old/params.Rcheck/params’ - - -``` -# PathwaySpace - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/PathwaySpace -* Number of recursive dependencies: 69 - -Run `revdepcheck::cloud_details(, "PathwaySpace")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# pcvr - -
- -* Version: 1.1.1.0 -* GitHub: https://github.com/danforthcenter/pcvr -* Source code: https://github.com/cran/pcvr -* Date/Publication: 2024-11-06 20:50:02 UTC -* Number of recursive dependencies: 189 - -Run `revdepcheck::cloud_details(, "pcvr")` for more info - -
- -## In both - -* checking whether package ‘pcvr’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/pcvr/new/pcvr.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘pcvr’ ... -** package ‘pcvr’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Warning in check_dep_version() : - ABI version mismatch: -lme4 was built with Matrix ABI version 1 -Current Matrix ABI version is 0 -Please re-install lme4 from source or restore original ‘Matrix’ package -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘pcvr’ -* removing ‘/tmp/workdir/pcvr/new/pcvr.Rcheck/pcvr’ - - -``` -### CRAN - -``` -* installing *source* package ‘pcvr’ ... -** package ‘pcvr’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Warning in check_dep_version() : - ABI version mismatch: -lme4 was built with Matrix ABI version 1 -Current Matrix ABI version is 0 -Please re-install lme4 from source or restore original ‘Matrix’ package -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘pcvr’ -* removing ‘/tmp/workdir/pcvr/old/pcvr.Rcheck/pcvr’ - - -``` -# poems - -
- -* Version: 1.3.1 -* GitHub: https://github.com/GlobalEcologyLab/poems -* Source code: https://github.com/cran/poems -* Date/Publication: 2024-09-19 20:40:03 UTC -* Number of recursive dependencies: 100 - -Run `revdepcheck::cloud_details(, "poems")` for more info - -
- -## In both - -* checking whether package ‘poems’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/poems/new/poems.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘poems’ ... -** package ‘poems’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘poems’ -* removing ‘/tmp/workdir/poems/new/poems.Rcheck/poems’ - - -``` -### CRAN - -``` -* installing *source* package ‘poems’ ... -** package ‘poems’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘poems’ -* removing ‘/tmp/workdir/poems/old/poems.Rcheck/poems’ - - -``` -# popEpi - -
- -* Version: 0.4.12 -* GitHub: https://github.com/FinnishCancerRegistry/popEpi -* Source code: https://github.com/cran/popEpi -* Date/Publication: 2024-05-10 09:00:02 UTC -* Number of recursive dependencies: 142 - -Run `revdepcheck::cloud_details(, "popEpi")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/popEpi/new/popEpi.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘popEpi/DESCRIPTION’ ... OK -... - Error: Test failures - Execution halted -* checking for unstated dependencies in vignettes ... OK -* checking package vignettes in ‘inst/doc’ ... OK -* checking running R code from vignettes ... OK - ‘sir.Rmd’ using ‘UTF-8’... OK - ‘survtab_examples.Rmd’ using ‘UTF-8’... OK -* checking re-building of vignette outputs ... OK -* DONE -Status: 1 ERROR - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/popEpi/old/popEpi.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘popEpi/DESCRIPTION’ ... OK -... - Error: Test failures - Execution halted -* checking for unstated dependencies in vignettes ... OK -* checking package vignettes in ‘inst/doc’ ... OK -* checking running R code from vignettes ... OK - ‘sir.Rmd’ using ‘UTF-8’... OK - ‘survtab_examples.Rmd’ using ‘UTF-8’... OK -* checking re-building of vignette outputs ... OK -* DONE -Status: 1 ERROR - - - - - -``` -# popstudy - -
- -* Version: 1.0.1 -* GitHub: NA -* Source code: https://github.com/cran/popstudy -* Date/Publication: 2023-10-17 23:50:02 UTC -* Number of recursive dependencies: 239 - -Run `revdepcheck::cloud_details(, "popstudy")` for more info - -
- -## In both - -* checking whether package ‘popstudy’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/popstudy/new/popstudy.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘popstudy’ ... -** package ‘popstudy’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘popstudy’ -* removing ‘/tmp/workdir/popstudy/new/popstudy.Rcheck/popstudy’ - - -``` -### CRAN - -``` -* installing *source* package ‘popstudy’ ... -** package ‘popstudy’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘popstudy’ -* removing ‘/tmp/workdir/popstudy/old/popstudy.Rcheck/popstudy’ - - -``` -# powerly - -
- -* Version: 1.8.6 -* GitHub: https://github.com/mihaiconstantin/powerly -* Source code: https://github.com/cran/powerly -* Date/Publication: 2022-09-09 14:10:01 UTC -* Number of recursive dependencies: 166 - -Run `revdepcheck::cloud_details(, "powerly")` for more info - -
- -## In both - -* checking whether package ‘powerly’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/powerly/new/powerly.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘powerly’ ... -** package ‘powerly’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Warning in check_dep_version() : - ABI version mismatch: -lme4 was built with Matrix ABI version 1 -Current Matrix ABI version is 0 -Please re-install lme4 from source or restore original ‘Matrix’ package -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.1 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘powerly’ -* removing ‘/tmp/workdir/powerly/new/powerly.Rcheck/powerly’ - - -``` -### CRAN - -``` -* installing *source* package ‘powerly’ ... -** package ‘powerly’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Warning in check_dep_version() : - ABI version mismatch: -lme4 was built with Matrix ABI version 1 -Current Matrix ABI version is 0 -Please re-install lme4 from source or restore original ‘Matrix’ package -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.1 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘powerly’ -* removing ‘/tmp/workdir/powerly/old/powerly.Rcheck/powerly’ - - -``` -# pre - -
- -* Version: 1.0.7 -* GitHub: https://github.com/marjoleinF/pre -* Source code: https://github.com/cran/pre -* Date/Publication: 2024-01-12 19:30:02 UTC -* Number of recursive dependencies: 150 - -Run `revdepcheck::cloud_details(, "pre")` for more info - -
- -## In both - -* checking whether package ‘pre’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/pre/new/pre.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘pre’ ... -** package ‘pre’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘pre’ -* removing ‘/tmp/workdir/pre/new/pre.Rcheck/pre’ - - -``` -### CRAN - -``` -* installing *source* package ‘pre’ ... -** package ‘pre’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘pre’ -* removing ‘/tmp/workdir/pre/old/pre.Rcheck/pre’ - - -``` -# pscore - -
- -* Version: 0.4.0 -* GitHub: https://github.com/JWiley/score-project -* Source code: https://github.com/cran/pscore -* Date/Publication: 2022-05-13 22:30:02 UTC -* Number of recursive dependencies: 168 - -Run `revdepcheck::cloud_details(, "pscore")` for more info - -
- -## In both - -* checking whether package ‘pscore’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/pscore/new/pscore.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘pscore’ ... -** package ‘pscore’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -** inst -** byte-compile and prepare package for lazy loading -Warning in check_dep_version() : - ABI version mismatch: -lme4 was built with Matrix ABI version 1 -Current Matrix ABI version is 0 -Please re-install lme4 from source or restore original ‘Matrix’ package -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘pscore’ -* removing ‘/tmp/workdir/pscore/new/pscore.Rcheck/pscore’ - - -``` -### CRAN - -``` -* installing *source* package ‘pscore’ ... -** package ‘pscore’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -** inst -** byte-compile and prepare package for lazy loading -Warning in check_dep_version() : - ABI version mismatch: -lme4 was built with Matrix ABI version 1 -Current Matrix ABI version is 0 -Please re-install lme4 from source or restore original ‘Matrix’ package -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘pscore’ -* removing ‘/tmp/workdir/pscore/old/pscore.Rcheck/pscore’ - - -``` -# Publish - -
- -* Version: 2023.01.17 -* GitHub: NA -* Source code: https://github.com/cran/Publish -* Date/Publication: 2023-01-17 17:40:09 UTC -* Number of recursive dependencies: 122 - -Run `revdepcheck::cloud_details(, "Publish")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/Publish/new/Publish.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘Publish/DESCRIPTION’ ... OK -... - > library(Publish) - Loading required package: prodlim - > library(mitools) - > library(smcfcs) - > library(riskRegression) - Error in library(riskRegression) : - there is no package called 'riskRegression' - Execution halted -* DONE -Status: 2 ERRORs, 1 NOTE - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/Publish/old/Publish.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘Publish/DESCRIPTION’ ... OK -... - > library(Publish) - Loading required package: prodlim - > library(mitools) - > library(smcfcs) - > library(riskRegression) - Error in library(riskRegression) : - there is no package called 'riskRegression' - Execution halted -* DONE -Status: 2 ERRORs, 1 NOTE - - - - - -``` -# qris - -
- -* Version: 1.1.1 -* GitHub: https://github.com/Kyuhyun07/qris -* Source code: https://github.com/cran/qris -* Date/Publication: 2024-03-05 14:40:03 UTC -* Number of recursive dependencies: 54 - -Run `revdepcheck::cloud_details(, "qris")` for more info - -
- -## In both - -* checking whether package ‘qris’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/qris/new/qris.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘qris’ ... -** package ‘qris’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C compiler: ‘gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -using C++11 -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c Amat.cpp -o Amat.o -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c ghat.cpp -o ghat.o -... -installing to /tmp/workdir/qris/new/qris.Rcheck/00LOCK-qris/00new/qris/libs -** R -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘qris’ -* removing ‘/tmp/workdir/qris/new/qris.Rcheck/qris’ - - -``` -### CRAN - -``` -* installing *source* package ‘qris’ ... -** package ‘qris’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C compiler: ‘gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -using C++11 -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c Amat.cpp -o Amat.o -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c ghat.cpp -o ghat.o -... -installing to /tmp/workdir/qris/old/qris.Rcheck/00LOCK-qris/00new/qris/libs -** R -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘qris’ -* removing ‘/tmp/workdir/qris/old/qris.Rcheck/qris’ - - -``` -# QTOCen - -
- -* Version: 0.1.1 -* GitHub: NA -* Source code: https://github.com/cran/QTOCen -* Date/Publication: 2019-06-04 12:10:10 UTC -* Number of recursive dependencies: 112 - -Run `revdepcheck::cloud_details(, "QTOCen")` for more info - -
- -## In both - -* checking whether package ‘QTOCen’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/QTOCen/new/QTOCen.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘QTOCen’ ... -** package ‘QTOCen’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘QTOCen’ -* removing ‘/tmp/workdir/QTOCen/new/QTOCen.Rcheck/QTOCen’ - - -``` -### CRAN - -``` -* installing *source* package ‘QTOCen’ ... -** package ‘QTOCen’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘QTOCen’ -* removing ‘/tmp/workdir/QTOCen/old/QTOCen.Rcheck/QTOCen’ - - -``` -# quantspec - -
- -* Version: 1.2-4 -* GitHub: https://github.com/tobiaskley/quantspec -* Source code: https://github.com/cran/quantspec -* Date/Publication: 2024-07-11 12:50:02 UTC -* Number of recursive dependencies: 36 - -Run `revdepcheck::cloud_details(, "quantspec")` for more info - -
- -## In both - -* checking whether package ‘quantspec’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/quantspec/new/quantspec.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘quantspec’ ... -** package ‘quantspec’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c computeCoherency.cpp -o computeCoherency.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c computeSdNaive.cpp -o computeSdNaive.o -g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o quantspec.so RcppExports.o computeCoherency.o computeSdNaive.o -L/opt/R/4.3.1/lib/R/lib -lR -installing to /tmp/workdir/quantspec/new/quantspec.Rcheck/00LOCK-quantspec/00new/quantspec/libs -... -*** moving datasets to lazyload DB -** demo -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘quantspec’ -* removing ‘/tmp/workdir/quantspec/new/quantspec.Rcheck/quantspec’ - - -``` -### CRAN - -``` -* installing *source* package ‘quantspec’ ... -** package ‘quantspec’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c computeCoherency.cpp -o computeCoherency.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c computeSdNaive.cpp -o computeSdNaive.o -g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o quantspec.so RcppExports.o computeCoherency.o computeSdNaive.o -L/opt/R/4.3.1/lib/R/lib -lR -installing to /tmp/workdir/quantspec/old/quantspec.Rcheck/00LOCK-quantspec/00new/quantspec/libs -... -*** moving datasets to lazyload DB -** demo -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘quantspec’ -* removing ‘/tmp/workdir/quantspec/old/quantspec.Rcheck/quantspec’ - - -``` -# quid - -
- -* Version: 0.0.1 -* GitHub: NA -* Source code: https://github.com/cran/quid -* Date/Publication: 2021-12-09 09:00:02 UTC -* Number of recursive dependencies: 94 - -Run `revdepcheck::cloud_details(, "quid")` for more info - -
- -## In both - -* checking whether package ‘quid’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/quid/new/quid.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘quid’ ... -** package ‘quid’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘quid’ -* removing ‘/tmp/workdir/quid/new/quid.Rcheck/quid’ - - -``` -### CRAN - -``` -* installing *source* package ‘quid’ ... -** package ‘quid’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘quid’ -* removing ‘/tmp/workdir/quid/old/quid.Rcheck/quid’ - - -``` -# rddtools - -
- -* Version: 1.6.0 -* GitHub: https://github.com/bquast/rddtools -* Source code: https://github.com/cran/rddtools -* Date/Publication: 2022-01-10 12:42:49 UTC -* Number of recursive dependencies: 105 - -Run `revdepcheck::cloud_details(, "rddtools")` for more info - -
- -## In both - -* checking whether package ‘rddtools’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/rddtools/new/rddtools.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘rddtools’ ... -** package ‘rddtools’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -** inst -** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘np’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Execution halted -ERROR: lazy loading failed for package ‘rddtools’ -* removing ‘/tmp/workdir/rddtools/new/rddtools.Rcheck/rddtools’ - - -``` -### CRAN - -``` -* installing *source* package ‘rddtools’ ... -** package ‘rddtools’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -** inst -** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘np’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Execution halted -ERROR: lazy loading failed for package ‘rddtools’ -* removing ‘/tmp/workdir/rddtools/old/rddtools.Rcheck/rddtools’ - - -``` -# rdflib - -
- -* Version: 0.2.9 -* GitHub: https://github.com/ropensci/rdflib -* Source code: https://github.com/cran/rdflib -* Date/Publication: 2024-08-17 06:00:05 UTC -* Number of recursive dependencies: 93 - -Run `revdepcheck::cloud_details(, "rdflib")` for more info - -
- -## In both - -* checking whether package ‘rdflib’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/rdflib/new/rdflib.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘rdflib’ ... -** package ‘rdflib’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Error in dyn.load(file, DLLpath = DLLpath, ...) : - unable to load shared object '/usr/local/lib/R/site-library/redland/libs/redland.so': - librdf.so.0: cannot open shared object file: No such file or directory -Calls: ... asNamespace -> loadNamespace -> library.dynam -> dyn.load -Execution halted -ERROR: lazy loading failed for package ‘rdflib’ -* removing ‘/tmp/workdir/rdflib/new/rdflib.Rcheck/rdflib’ - - -``` -### CRAN - -``` -* installing *source* package ‘rdflib’ ... -** package ‘rdflib’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Error in dyn.load(file, DLLpath = DLLpath, ...) : - unable to load shared object '/usr/local/lib/R/site-library/redland/libs/redland.so': - librdf.so.0: cannot open shared object file: No such file or directory -Calls: ... asNamespace -> loadNamespace -> library.dynam -> dyn.load -Execution halted -ERROR: lazy loading failed for package ‘rdflib’ -* removing ‘/tmp/workdir/rdflib/old/rdflib.Rcheck/rdflib’ - - -``` -# redland - -
- -* Version: 1.0.17-18 -* GitHub: https://github.com/ropensci/redland-bindings -* Source code: https://github.com/cran/redland -* Date/Publication: 2024-02-24 01:10:02 UTC -* Number of recursive dependencies: 53 - -Run `revdepcheck::cloud_details(, "redland")` for more info - -
- -## In both - -* checking whether package ‘redland’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/redland/new/redland.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘redland’ ... -** package ‘redland’ successfully unpacked and MD5 sums checked -** using staged installation -Using PKG_CFLAGS= -Using PKG_LIBS=-lrdf -------------------------- ANTICONF ERROR --------------------------- -Configuration failed because redland was not found. Try installing: - * deb: librdf0-dev (Debian, Ubuntu, etc) - * rpm: redland-devel (Fedora, EPEL) - * brew: redland (OSX) -If redland is already installed, check that 'pkg-config' is in your -PATH and PKG_CONFIG_PATH contains a redland.pc file. If pkg-config -is unavailable you can set INCLUDE_DIR and LIB_DIR manually via: -R CMD INSTALL --configure-vars='INCLUDE_DIR=... LIB_DIR=...' --------------------------------------------------------------------- -ERROR: configuration failed for package ‘redland’ -* removing ‘/tmp/workdir/redland/new/redland.Rcheck/redland’ - - -``` -### CRAN - -``` -* installing *source* package ‘redland’ ... -** package ‘redland’ successfully unpacked and MD5 sums checked -** using staged installation -Using PKG_CFLAGS= -Using PKG_LIBS=-lrdf -------------------------- ANTICONF ERROR --------------------------- -Configuration failed because redland was not found. Try installing: - * deb: librdf0-dev (Debian, Ubuntu, etc) - * rpm: redland-devel (Fedora, EPEL) - * brew: redland (OSX) -If redland is already installed, check that 'pkg-config' is in your -PATH and PKG_CONFIG_PATH contains a redland.pc file. If pkg-config -is unavailable you can set INCLUDE_DIR and LIB_DIR manually via: -R CMD INSTALL --configure-vars='INCLUDE_DIR=... LIB_DIR=...' --------------------------------------------------------------------- -ERROR: configuration failed for package ‘redland’ -* removing ‘/tmp/workdir/redland/old/redland.Rcheck/redland’ - - -``` -# RGraphSpace - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/RGraphSpace -* Number of recursive dependencies: 64 - -Run `revdepcheck::cloud_details(, "RGraphSpace")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# riskRegression - -
- -* Version: 2023.12.21 -* GitHub: https://github.com/tagteam/riskRegression -* Source code: https://github.com/cran/riskRegression -* Date/Publication: 2023-12-19 17:00:02 UTC -* Number of recursive dependencies: 185 - -Run `revdepcheck::cloud_details(, "riskRegression")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/riskRegression/new/riskRegression.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘riskRegression/DESCRIPTION’ ... OK -... -* this is package ‘riskRegression’ version ‘2023.12.21’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘rms’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/riskRegression/old/riskRegression.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘riskRegression/DESCRIPTION’ ... OK -... -* this is package ‘riskRegression’ version ‘2023.12.21’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘rms’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -# rlme - -
- -* Version: 0.5 -* GitHub: NA -* Source code: https://github.com/cran/rlme -* Date/Publication: 2018-01-09 17:35:55 UTC -* Number of recursive dependencies: 41 - -Run `revdepcheck::cloud_details(, "rlme")` for more info - -
- -## In both - -* checking whether package ‘rlme’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/rlme/new/rlme.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘rlme’ ... -** package ‘rlme’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c bmat.cpp -o bmat.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c pairup.cpp -o pairup.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c remove_k_smallest.cpp -o remove_k_smallest.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c rhosch.cpp -o rhosch.o -... -** R -** data -*** moving datasets to lazyload DB -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘rlme’ -* removing ‘/tmp/workdir/rlme/new/rlme.Rcheck/rlme’ - - -``` -### CRAN - -``` -* installing *source* package ‘rlme’ ... -** package ‘rlme’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c bmat.cpp -o bmat.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c pairup.cpp -o pairup.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c remove_k_smallest.cpp -o remove_k_smallest.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c rhosch.cpp -o rhosch.o -... -** R -** data -*** moving datasets to lazyload DB -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘rlme’ -* removing ‘/tmp/workdir/rlme/old/rlme.Rcheck/rlme’ - - -``` -# robber - -
- -* Version: 0.2.4 -* GitHub: https://github.com/Chabert-Liddell/robber -* Source code: https://github.com/cran/robber -* Date/Publication: 2024-02-07 13:50:02 UTC -* Number of recursive dependencies: 143 - -Run `revdepcheck::cloud_details(, "robber")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/robber/new/robber.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘robber/DESCRIPTION’ ... OK -... -* checking tests ... OK - Running ‘spelling.R’ - Running ‘testthat.R’ -* checking for unstated dependencies in vignettes ... OK -* checking package vignettes in ‘inst/doc’ ... OK -* checking running R code from vignettes ... OK - ‘topological-analysis.Rmd’ using ‘UTF-8’... OK -* checking re-building of vignette outputs ... OK -* DONE -Status: OK - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/robber/old/robber.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘robber/DESCRIPTION’ ... OK -... -* checking tests ... OK - Running ‘spelling.R’ - Running ‘testthat.R’ -* checking for unstated dependencies in vignettes ... OK -* checking package vignettes in ‘inst/doc’ ... OK -* checking running R code from vignettes ... OK - ‘topological-analysis.Rmd’ using ‘UTF-8’... OK -* checking re-building of vignette outputs ... OK -* DONE -Status: OK - - - - - -``` -# robmed - -
- -* Version: 1.1.0 -* GitHub: https://github.com/aalfons/robmed -* Source code: https://github.com/cran/robmed -* Date/Publication: 2024-11-03 05:30:07 UTC -* Number of recursive dependencies: 59 - -Run `revdepcheck::cloud_details(, "robmed")` for more info - -
- -## In both - -* checking whether package ‘robmed’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/robmed/new/robmed.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘robmed’ ... -** package ‘robmed’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘robmed’ -* removing ‘/tmp/workdir/robmed/new/robmed.Rcheck/robmed’ - - -``` -### CRAN - -``` -* installing *source* package ‘robmed’ ... -** package ‘robmed’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘robmed’ -* removing ‘/tmp/workdir/robmed/old/robmed.Rcheck/robmed’ - - -``` -# RQdeltaCT - -
- -* Version: 1.3.0 -* GitHub: NA -* Source code: https://github.com/cran/RQdeltaCT -* Date/Publication: 2024-04-17 15:50:02 UTC -* Number of recursive dependencies: 163 - -Run `revdepcheck::cloud_details(, "RQdeltaCT")` for more info - -
- -## In both - -* checking whether package ‘RQdeltaCT’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/RQdeltaCT/new/RQdeltaCT.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘RQdeltaCT’ ... -** package ‘RQdeltaCT’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘RQdeltaCT’ -* removing ‘/tmp/workdir/RQdeltaCT/new/RQdeltaCT.Rcheck/RQdeltaCT’ - - -``` -### CRAN - -``` -* installing *source* package ‘RQdeltaCT’ ... -** package ‘RQdeltaCT’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘RQdeltaCT’ -* removing ‘/tmp/workdir/RQdeltaCT/old/RQdeltaCT.Rcheck/RQdeltaCT’ - - -``` -# RRPP - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/RRPP -* Number of recursive dependencies: 67 - -Run `revdepcheck::cloud_details(, "RRPP")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# rstanarm - -
- -* Version: 2.32.1 -* GitHub: https://github.com/stan-dev/rstanarm -* Source code: https://github.com/cran/rstanarm -* Date/Publication: 2024-01-18 23:00:03 UTC -* Number of recursive dependencies: 137 - -Run `revdepcheck::cloud_details(, "rstanarm")` for more info - -
- -## In both - -* checking whether package ‘rstanarm’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/rstanarm/new/rstanarm.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘rstanarm’ ... -** package ‘rstanarm’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -using C++17 -"/opt/R/4.3.1/lib/R/bin/Rscript" -e "source(file.path('..', 'tools', 'make_cc.R')); make_cc(commandArgs(TRUE))" stan_files/bernoulli.stan -Wrote C++ file "stan_files/bernoulli.cc" - - -... -/usr/local/lib/R/site-library/StanHeaders/include/stan/math/rev/fun/quad_form.hpp:88:0: required from here -/usr/local/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] - 654 | return internal::first_aligned::alignment),Derived>(m); - | ^~~~~~~~~ -g++: fatal error: Killed signal terminated program cc1plus -compilation terminated. -make: *** [/opt/R/4.3.1/lib/R/etc/Makeconf:198: stan_files/continuous.o] Error 1 -rm stan_files/bernoulli.cc stan_files/binomial.cc stan_files/continuous.cc -ERROR: compilation failed for package ‘rstanarm’ -* removing ‘/tmp/workdir/rstanarm/new/rstanarm.Rcheck/rstanarm’ - - -``` -### CRAN - -``` -* installing *source* package ‘rstanarm’ ... -** package ‘rstanarm’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -using C++17 -"/opt/R/4.3.1/lib/R/bin/Rscript" -e "source(file.path('..', 'tools', 'make_cc.R')); make_cc(commandArgs(TRUE))" stan_files/bernoulli.stan -Wrote C++ file "stan_files/bernoulli.cc" - - -... -/usr/local/lib/R/site-library/StanHeaders/include/stan/math/rev/fun/quad_form.hpp:88:0: required from here -/usr/local/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] - 654 | return internal::first_aligned::alignment),Derived>(m); - | ^~~~~~~~~ -g++: fatal error: Killed signal terminated program cc1plus -compilation terminated. -make: *** [/opt/R/4.3.1/lib/R/etc/Makeconf:198: stan_files/continuous.o] Error 1 -rm stan_files/bernoulli.cc stan_files/binomial.cc stan_files/continuous.cc -ERROR: compilation failed for package ‘rstanarm’ -* removing ‘/tmp/workdir/rstanarm/old/rstanarm.Rcheck/rstanarm’ - - -``` -# scAnnotate - -
- -* Version: 0.3 -* GitHub: NA -* Source code: https://github.com/cran/scAnnotate -* Date/Publication: 2024-03-14 00:00:02 UTC -* Number of recursive dependencies: 163 - -Run `revdepcheck::cloud_details(, "scAnnotate")` for more info - -
- -## In both - -* checking whether package ‘scAnnotate’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/scAnnotate/new/scAnnotate.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘scAnnotate’ ... -** package ‘scAnnotate’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.4 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘scAnnotate’ -* removing ‘/tmp/workdir/scAnnotate/new/scAnnotate.Rcheck/scAnnotate’ - - -``` -### CRAN - -``` -* installing *source* package ‘scAnnotate’ ... -** package ‘scAnnotate’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.4 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘scAnnotate’ -* removing ‘/tmp/workdir/scAnnotate/old/scAnnotate.Rcheck/scAnnotate’ - - -``` -# SCIntRuler - -
- -* Version: 0.99.6 -* GitHub: https://github.com/yuelyu21/SCIntRuler -* Source code: https://github.com/cran/SCIntRuler -* Date/Publication: 2024-07-12 15:20:08 UTC -* Number of recursive dependencies: 202 - -Run `revdepcheck::cloud_details(, "SCIntRuler")` for more info - -
- -## In both - -* checking whether package ‘SCIntRuler’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/SCIntRuler/new/SCIntRuler.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘SCIntRuler’ ... -** package ‘SCIntRuler’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c crossdist.cpp -o crossdist.o -g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o SCIntRuler.so RcppExports.o crossdist.o -L/opt/R/4.3.1/lib/R/lib -lR -installing to /tmp/workdir/SCIntRuler/new/SCIntRuler.Rcheck/00LOCK-SCIntRuler/00new/SCIntRuler/libs -** R -... -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is being loaded, but >= 1.6.4 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘SCIntRuler’ -* removing ‘/tmp/workdir/SCIntRuler/new/SCIntRuler.Rcheck/SCIntRuler’ - - -``` -### CRAN - -``` -* installing *source* package ‘SCIntRuler’ ... -** package ‘SCIntRuler’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c crossdist.cpp -o crossdist.o -g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o SCIntRuler.so RcppExports.o crossdist.o -L/opt/R/4.3.1/lib/R/lib -lR -installing to /tmp/workdir/SCIntRuler/old/SCIntRuler.Rcheck/00LOCK-SCIntRuler/00new/SCIntRuler/libs -** R -... -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is being loaded, but >= 1.6.4 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘SCIntRuler’ -* removing ‘/tmp/workdir/SCIntRuler/old/SCIntRuler.Rcheck/SCIntRuler’ - - -``` -# scMappR - -
- -* Version: 1.0.11 -* GitHub: NA -* Source code: https://github.com/cran/scMappR -* Date/Publication: 2023-06-30 08:40:08 UTC -* Number of recursive dependencies: 241 - -Run `revdepcheck::cloud_details(, "scMappR")` for more info - -
- -## In both - -* checking whether package ‘scMappR’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/scMappR/new/scMappR.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘scMappR’ ... -** package ‘scMappR’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.4 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘scMappR’ -* removing ‘/tmp/workdir/scMappR/new/scMappR.Rcheck/scMappR’ - - -``` -### CRAN - -``` -* installing *source* package ‘scMappR’ ... -** package ‘scMappR’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.4 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘scMappR’ -* removing ‘/tmp/workdir/scMappR/old/scMappR.Rcheck/scMappR’ - - -``` -# scperturbR - -
- -* Version: 0.1.0 -* GitHub: https://github.com/sanderlab/scPerturb -* Source code: https://github.com/cran/scperturbR -* Date/Publication: 2023-03-01 20:10:02 UTC -* Number of recursive dependencies: 161 - -Run `revdepcheck::cloud_details(, "scperturbR")` for more info - -
- -## In both - -* checking whether package ‘scperturbR’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/scperturbR/new/scperturbR.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘scperturbR’ ... -** package ‘scperturbR’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.4 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘scperturbR’ -* removing ‘/tmp/workdir/scperturbR/new/scperturbR.Rcheck/scperturbR’ - - -``` -### CRAN - -``` -* installing *source* package ‘scperturbR’ ... -** package ‘scperturbR’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.4 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘scperturbR’ -* removing ‘/tmp/workdir/scperturbR/old/scperturbR.Rcheck/scperturbR’ - - -``` -# scpi - -
- -* Version: 2.2.5 -* GitHub: NA -* Source code: https://github.com/cran/scpi -* Date/Publication: 2023-11-01 06:10:07 UTC -* Number of recursive dependencies: 97 - -Run `revdepcheck::cloud_details(, "scpi")` for more info - -
- -## In both - -* checking whether package ‘scpi’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/scpi/new/scpi.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘scpi’ ... -** package ‘scpi’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘scpi’ -* removing ‘/tmp/workdir/scpi/new/scpi.Rcheck/scpi’ - - -``` -### CRAN - -``` -* installing *source* package ‘scpi’ ... -** package ‘scpi’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘scpi’ -* removing ‘/tmp/workdir/scpi/old/scpi.Rcheck/scpi’ - - -``` -# SCRIP - -
- -* Version: 1.0.0 -* GitHub: https://github.com/thecailab/SCRIP -* Source code: https://github.com/cran/SCRIP -* Date/Publication: 2021-11-19 07:50:02 UTC -* Number of recursive dependencies: 190 - -Run `revdepcheck::cloud_details(, "SCRIP")` for more info - -
- -## In both - -* checking whether package ‘SCRIP’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/SCRIP/new/SCRIP.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘SCRIP’ ... -** package ‘SCRIP’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.4 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘SCRIP’ -* removing ‘/tmp/workdir/SCRIP/new/SCRIP.Rcheck/SCRIP’ - - -``` -### CRAN - -``` -* installing *source* package ‘SCRIP’ ... -** package ‘SCRIP’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.4 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘SCRIP’ -* removing ‘/tmp/workdir/SCRIP/old/SCRIP.Rcheck/SCRIP’ - - -``` -# SensIAT - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/SensIAT -* Number of recursive dependencies: 60 - -Run `revdepcheck::cloud_details(, "SensIAT")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# SensMap - -
- -* Version: 0.7 -* GitHub: https://github.com/IbtihelRebhi/SensMap -* Source code: https://github.com/cran/SensMap -* Date/Publication: 2022-07-04 19:00:02 UTC -* Number of recursive dependencies: 145 - -Run `revdepcheck::cloud_details(, "SensMap")` for more info - -
- -## In both - -* checking whether package ‘SensMap’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/SensMap/new/SensMap.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘SensMap’ ... -** package ‘SensMap’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘SensMap’ -* removing ‘/tmp/workdir/SensMap/new/SensMap.Rcheck/SensMap’ - - -``` -### CRAN - -``` -* installing *source* package ‘SensMap’ ... -** package ‘SensMap’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘SensMap’ -* removing ‘/tmp/workdir/SensMap/old/SensMap.Rcheck/SensMap’ - - -``` -# Seurat - -
- -* Version: 5.1.0 -* GitHub: https://github.com/satijalab/seurat -* Source code: https://github.com/cran/Seurat -* Date/Publication: 2024-05-10 17:23:17 UTC -* Number of recursive dependencies: 265 - -Run `revdepcheck::cloud_details(, "Seurat")` for more info - -
- -## In both - -* checking whether package ‘Seurat’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/Seurat/new/Seurat.Rcheck/00install.out’ for details. - ``` - -* checking package dependencies ... NOTE - ``` - Package suggested but not available for checking: ‘enrichR’ - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘Seurat’ ... -** package ‘Seurat’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C compiler: ‘gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -using C++17 -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppEigen/include' -I'/usr/local/lib/R/site-library/RcppProgress/include' -I/usr/local/include -fpic -g -O2 -c ModularityOptimizer.cpp -o ModularityOptimizer.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppEigen/include' -I'/usr/local/lib/R/site-library/RcppProgress/include' -I/usr/local/include -fpic -g -O2 -c RModularityOptimizer.cpp -o RModularityOptimizer.o -In file included from /usr/local/lib/R/site-library/RcppEigen/include/Eigen/Core:205, -... -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘SeuratObject’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - namespace ‘Matrix’ 1.5-4.1 is being loaded, but >= 1.6.4 is required -Execution halted -ERROR: lazy loading failed for package ‘Seurat’ -* removing ‘/tmp/workdir/Seurat/new/Seurat.Rcheck/Seurat’ - - -``` -### CRAN - -``` -* installing *source* package ‘Seurat’ ... -** package ‘Seurat’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C compiler: ‘gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -using C++17 -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppEigen/include' -I'/usr/local/lib/R/site-library/RcppProgress/include' -I/usr/local/include -fpic -g -O2 -c ModularityOptimizer.cpp -o ModularityOptimizer.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppEigen/include' -I'/usr/local/lib/R/site-library/RcppProgress/include' -I/usr/local/include -fpic -g -O2 -c RModularityOptimizer.cpp -o RModularityOptimizer.o -In file included from /usr/local/lib/R/site-library/RcppEigen/include/Eigen/Core:205, -... -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘SeuratObject’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - namespace ‘Matrix’ 1.5-4.1 is being loaded, but >= 1.6.4 is required -Execution halted -ERROR: lazy loading failed for package ‘Seurat’ -* removing ‘/tmp/workdir/Seurat/old/Seurat.Rcheck/Seurat’ - - -``` -# shinyTempSignal - -
- -* Version: 0.0.8 -* GitHub: https://github.com/YuLab-SMU/shinyTempSignal -* Source code: https://github.com/cran/shinyTempSignal -* Date/Publication: 2024-03-06 08:00:02 UTC -* Number of recursive dependencies: 134 - -Run `revdepcheck::cloud_details(, "shinyTempSignal")` for more info - -
- -## In both - -* checking whether package ‘shinyTempSignal’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/shinyTempSignal/new/shinyTempSignal.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘shinyTempSignal’ ... -** package ‘shinyTempSignal’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘shinyTempSignal’ -* removing ‘/tmp/workdir/shinyTempSignal/new/shinyTempSignal.Rcheck/shinyTempSignal’ - - -``` -### CRAN - -``` -* installing *source* package ‘shinyTempSignal’ ... -** package ‘shinyTempSignal’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘shinyTempSignal’ -* removing ‘/tmp/workdir/shinyTempSignal/old/shinyTempSignal.Rcheck/shinyTempSignal’ - - -``` -# Signac - -
- -* Version: 1.14.0 -* GitHub: https://github.com/stuart-lab/signac -* Source code: https://github.com/cran/Signac -* Date/Publication: 2024-08-21 07:40:02 UTC -* Number of recursive dependencies: 246 - -Run `revdepcheck::cloud_details(, "Signac")` for more info - -
- -## In both - -* checking whether package ‘Signac’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/Signac/new/Signac.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘Signac’ ... -** package ‘Signac’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c filter.cpp -o filter.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c group.cpp -o group.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c split.cpp -o split.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c validate.cpp -o validate.o -... -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.4 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘Signac’ -* removing ‘/tmp/workdir/Signac/new/Signac.Rcheck/Signac’ - - -``` -### CRAN - -``` -* installing *source* package ‘Signac’ ... -** package ‘Signac’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c filter.cpp -o filter.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c group.cpp -o group.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c split.cpp -o split.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c validate.cpp -o validate.o -... -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.4 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘Signac’ -* removing ‘/tmp/workdir/Signac/old/Signac.Rcheck/Signac’ - - -``` -# SimplyAgree - -
- -* Version: 0.2.0 -* GitHub: https://github.com/arcaldwell49/SimplyAgree -* Source code: https://github.com/cran/SimplyAgree -* Date/Publication: 2024-03-21 14:20:06 UTC -* Number of recursive dependencies: 114 - -Run `revdepcheck::cloud_details(, "SimplyAgree")` for more info - -
- -## In both - -* checking whether package ‘SimplyAgree’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/SimplyAgree/new/SimplyAgree.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘SimplyAgree’ ... -** package ‘SimplyAgree’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Warning in check_dep_version() : - ABI version mismatch: -lme4 was built with Matrix ABI version 1 -Current Matrix ABI version is 0 -Please re-install lme4 from source or restore original ‘Matrix’ package -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘SimplyAgree’ -* removing ‘/tmp/workdir/SimplyAgree/new/SimplyAgree.Rcheck/SimplyAgree’ - - -``` -### CRAN - -``` -* installing *source* package ‘SimplyAgree’ ... -** package ‘SimplyAgree’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Warning in check_dep_version() : - ABI version mismatch: -lme4 was built with Matrix ABI version 1 -Current Matrix ABI version is 0 -Please re-install lme4 from source or restore original ‘Matrix’ package -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘SimplyAgree’ -* removing ‘/tmp/workdir/SimplyAgree/old/SimplyAgree.Rcheck/SimplyAgree’ - - -``` -# smoothAPC - -
- -* Version: 0.3 -* GitHub: NA -* Source code: https://github.com/cran/smoothAPC -* Date/Publication: 2018-05-18 09:43:08 UTC -* Number of recursive dependencies: 182 - -Run `revdepcheck::cloud_details(, "smoothAPC")` for more info - -
- -## In both - -* checking whether package ‘smoothAPC’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/smoothAPC/new/smoothAPC.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘smoothAPC’ ... -** package ‘smoothAPC’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘smoothAPC’ -* removing ‘/tmp/workdir/smoothAPC/new/smoothAPC.Rcheck/smoothAPC’ - - -``` -### CRAN - -``` -* installing *source* package ‘smoothAPC’ ... -** package ‘smoothAPC’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘smoothAPC’ -* removing ‘/tmp/workdir/smoothAPC/old/smoothAPC.Rcheck/smoothAPC’ - - -``` -# SNPassoc - -
- -* Version: 2.1-2 -* GitHub: https://github.com/isglobal-brge/SNPassoc -* Source code: https://github.com/cran/SNPassoc -* Date/Publication: 2024-10-28 17:30:02 UTC -* Number of recursive dependencies: 164 - -Run `revdepcheck::cloud_details(, "SNPassoc")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/SNPassoc/new/SNPassoc.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘SNPassoc/DESCRIPTION’ ... OK -... -* this is package ‘SNPassoc’ version ‘2.1-2’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘haplo.stats’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/SNPassoc/old/SNPassoc.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘SNPassoc/DESCRIPTION’ ... OK -... -* this is package ‘SNPassoc’ version ‘2.1-2’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘haplo.stats’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -# snplinkage - -
- -* Version: 1.2.0 -* GitHub: NA -* Source code: https://github.com/cran/snplinkage -* Date/Publication: 2024-09-09 19:10:02 UTC -* Number of recursive dependencies: 152 - -Run `revdepcheck::cloud_details(, "snplinkage")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/snplinkage/new/snplinkage.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘snplinkage/DESCRIPTION’ ... OK -... -* this is package ‘snplinkage’ version ‘1.2.0’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘GWASTools’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/snplinkage/old/snplinkage.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘snplinkage/DESCRIPTION’ ... OK -... -* this is package ‘snplinkage’ version ‘1.2.0’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘GWASTools’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -# statsr - -
- -* Version: 0.3.0 -* GitHub: https://github.com/StatsWithR/statsr -* Source code: https://github.com/cran/statsr -* Date/Publication: 2021-01-22 20:40:03 UTC -* Number of recursive dependencies: 96 - -Run `revdepcheck::cloud_details(, "statsr")` for more info - -
- -## In both - -* checking whether package ‘statsr’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/statsr/new/statsr.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘statsr’ ... -** package ‘statsr’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘BayesFactor’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Execution halted -ERROR: lazy loading failed for package ‘statsr’ -* removing ‘/tmp/workdir/statsr/new/statsr.Rcheck/statsr’ - - -``` -### CRAN - -``` -* installing *source* package ‘statsr’ ... -** package ‘statsr’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘BayesFactor’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Execution halted -ERROR: lazy loading failed for package ‘statsr’ -* removing ‘/tmp/workdir/statsr/old/statsr.Rcheck/statsr’ - - -``` -# stR - -
- -* Version: 0.7 -* GitHub: https://github.com/robjhyndman/stR -* Source code: https://github.com/cran/stR -* Date/Publication: 2024-07-28 13:30:01 UTC -* Number of recursive dependencies: 190 - -Run `revdepcheck::cloud_details(, "stR")` for more info - -
- -## In both - -* checking whether package ‘stR’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/stR/new/stR.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘stR’ ... -** package ‘stR’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘stR’ -* removing ‘/tmp/workdir/stR/new/stR.Rcheck/stR’ - - -``` -### CRAN - -``` -* installing *source* package ‘stR’ ... -** package ‘stR’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘stR’ -* removing ‘/tmp/workdir/stR/old/stR.Rcheck/stR’ - - -``` -# survcompare - -
- -* Version: 0.2.0 -* GitHub: NA -* Source code: https://github.com/cran/survcompare -* Date/Publication: 2024-10-05 17:00:01 UTC -* Number of recursive dependencies: 155 - -Run `revdepcheck::cloud_details(, "survcompare")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/survcompare/new/survcompare.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘survcompare/DESCRIPTION’ ... OK -... -* checking installed files from ‘inst/doc’ ... OK -* checking files in ‘vignettes’ ... OK -* checking examples ... OK -* checking for unstated dependencies in vignettes ... OK -* checking package vignettes in ‘inst/doc’ ... OK -* checking running R code from vignettes ... OK - ‘survcompare_application.Rmd’ using ‘UTF-8’... OK -* checking re-building of vignette outputs ... OK -* DONE -Status: OK - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/survcompare/old/survcompare.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘survcompare/DESCRIPTION’ ... OK -... -* checking installed files from ‘inst/doc’ ... OK -* checking files in ‘vignettes’ ... OK -* checking examples ... OK -* checking for unstated dependencies in vignettes ... OK -* checking package vignettes in ‘inst/doc’ ... OK -* checking running R code from vignettes ... OK - ‘survcompare_application.Rmd’ using ‘UTF-8’... OK -* checking re-building of vignette outputs ... OK -* DONE -Status: OK - - - - - -``` -# survex - -
- -* Version: 1.2.0 -* GitHub: https://github.com/ModelOriented/survex -* Source code: https://github.com/cran/survex -* Date/Publication: 2023-10-24 18:50:07 UTC -* Number of recursive dependencies: 182 - -Run `revdepcheck::cloud_details(, "survex")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/survex/new/survex.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘survex/DESCRIPTION’ ... OK -... -  A new explainer has been created!  -> -> y <- cph_exp$y -> times <- cph_exp$times -> surv <- cph_exp$predict_survival_function(cph, cph_exp$data, times) -Error in loadNamespace(x) : there is no package called ‘riskRegression’ -Calls: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart -Execution halted -* DONE -Status: 1 ERROR, 1 NOTE - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/survex/old/survex.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘survex/DESCRIPTION’ ... OK -... -  A new explainer has been created!  -> -> y <- cph_exp$y -> times <- cph_exp$times -> surv <- cph_exp$predict_survival_function(cph, cph_exp$data, times) -Error in loadNamespace(x) : there is no package called ‘riskRegression’ -Calls: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart -Execution halted -* DONE -Status: 1 ERROR, 1 NOTE - - - - - -``` -# survHE - -
- -* Version: 2.0.2 -* GitHub: https://github.com/giabaio/survHE -* Source code: https://github.com/cran/survHE -* Date/Publication: 2024-10-04 09:50:02 UTC -* Number of recursive dependencies: 129 - -Run `revdepcheck::cloud_details(, "survHE")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/survHE/new/survHE.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘survHE/DESCRIPTION’ ... OK -... -* checking package dependencies ... ERROR -Package required but not available: ‘rms’ - -Packages suggested but not available for checking: - 'survHEinla', 'survHEhmc' - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/survHE/old/survHE.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘survHE/DESCRIPTION’ ... OK -... -* checking package dependencies ... ERROR -Package required but not available: ‘rms’ - -Packages suggested but not available for checking: - 'survHEinla', 'survHEhmc' - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -# SurvMetrics - -
- -* Version: 0.5.0 -* GitHub: https://github.com/skyee1/SurvMetrics -* Source code: https://github.com/cran/SurvMetrics -* Date/Publication: 2022-09-03 21:40:23 UTC -* Number of recursive dependencies: 189 - -Run `revdepcheck::cloud_details(, "SurvMetrics")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/SurvMetrics/new/SurvMetrics.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘SurvMetrics/DESCRIPTION’ ... OK -... ---- failed re-building ‘SurvMetrics-vignette.Rmd’ - -SUMMARY: processing the following file failed: - ‘SurvMetrics-vignette.Rmd’ - -Error: Vignette re-building failed. -Execution halted - -* DONE -Status: 1 ERROR, 1 WARNING, 1 NOTE - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/SurvMetrics/old/SurvMetrics.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘SurvMetrics/DESCRIPTION’ ... OK -... ---- failed re-building ‘SurvMetrics-vignette.Rmd’ - -SUMMARY: processing the following file failed: - ‘SurvMetrics-vignette.Rmd’ - -Error: Vignette re-building failed. -Execution halted - -* DONE -Status: 1 ERROR, 1 WARNING, 1 NOTE - - - - - -``` -# TestAnaAPP - -
- -* Version: 1.1.1 -* GitHub: https://github.com/jiangyouxiang/TestAnaAPP -* Source code: https://github.com/cran/TestAnaAPP -* Date/Publication: 2024-09-10 07:30:02 UTC -* Number of recursive dependencies: 249 - -Run `revdepcheck::cloud_details(, "TestAnaAPP")` for more info - -
- -## In both - -* checking whether package ‘TestAnaAPP’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/TestAnaAPP/new/TestAnaAPP.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘TestAnaAPP’ ... -** package ‘TestAnaAPP’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Warning in check_dep_version() : - ABI version mismatch: -lme4 was built with Matrix ABI version 1 -Current Matrix ABI version is 0 -Please re-install lme4 from source or restore original ‘Matrix’ package -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - there is no package called ‘rms’ -Calls: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart -Execution halted -ERROR: lazy loading failed for package ‘TestAnaAPP’ -* removing ‘/tmp/workdir/TestAnaAPP/new/TestAnaAPP.Rcheck/TestAnaAPP’ - - -``` -### CRAN - -``` -* installing *source* package ‘TestAnaAPP’ ... -** package ‘TestAnaAPP’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Warning in check_dep_version() : - ABI version mismatch: -lme4 was built with Matrix ABI version 1 -Current Matrix ABI version is 0 -Please re-install lme4 from source or restore original ‘Matrix’ package -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - there is no package called ‘rms’ -Calls: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart -Execution halted -ERROR: lazy loading failed for package ‘TestAnaAPP’ -* removing ‘/tmp/workdir/TestAnaAPP/old/TestAnaAPP.Rcheck/TestAnaAPP’ - - -``` -# tidyEdSurvey - -
- -* Version: 0.1.3 -* GitHub: NA -* Source code: https://github.com/cran/tidyEdSurvey -* Date/Publication: 2024-05-14 20:20:03 UTC -* Number of recursive dependencies: 110 - -Run `revdepcheck::cloud_details(, "tidyEdSurvey")` for more info - -
- -## In both - -* checking whether package ‘tidyEdSurvey’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/tidyEdSurvey/new/tidyEdSurvey.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘tidyEdSurvey’ ... -** package ‘tidyEdSurvey’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘EdSurvey’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -In addition: Warning message: -In check_dep_version() : ABI version mismatch: -lme4 was built with Matrix ABI version 1 -Current Matrix ABI version is 0 -Please re-install lme4 from source or restore original ‘Matrix’ package -Execution halted -ERROR: lazy loading failed for package ‘tidyEdSurvey’ -* removing ‘/tmp/workdir/tidyEdSurvey/new/tidyEdSurvey.Rcheck/tidyEdSurvey’ - - -``` -### CRAN - -``` -* installing *source* package ‘tidyEdSurvey’ ... -** package ‘tidyEdSurvey’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘EdSurvey’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -In addition: Warning message: -In check_dep_version() : ABI version mismatch: -lme4 was built with Matrix ABI version 1 -Current Matrix ABI version is 0 -Please re-install lme4 from source or restore original ‘Matrix’ package -Execution halted -ERROR: lazy loading failed for package ‘tidyEdSurvey’ -* removing ‘/tmp/workdir/tidyEdSurvey/old/tidyEdSurvey.Rcheck/tidyEdSurvey’ - - -``` -# tidyseurat - -
- -* Version: 0.8.0 -* GitHub: https://github.com/stemangiola/tidyseurat -* Source code: https://github.com/cran/tidyseurat -* Date/Publication: 2024-01-10 04:50:02 UTC -* Number of recursive dependencies: 196 - -Run `revdepcheck::cloud_details(, "tidyseurat")` for more info - -
- -## In both - -* checking whether package ‘tidyseurat’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/tidyseurat/new/tidyseurat.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘tidyseurat’ ... -** package ‘tidyseurat’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘SeuratObject’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.4 is required -Execution halted -ERROR: lazy loading failed for package ‘tidyseurat’ -* removing ‘/tmp/workdir/tidyseurat/new/tidyseurat.Rcheck/tidyseurat’ - - -``` -### CRAN - -``` -* installing *source* package ‘tidyseurat’ ... -** package ‘tidyseurat’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘SeuratObject’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.4 is required -Execution halted -ERROR: lazy loading failed for package ‘tidyseurat’ -* removing ‘/tmp/workdir/tidyseurat/old/tidyseurat.Rcheck/tidyseurat’ - - -``` -# tidyvpc - -
- -* Version: 1.5.1 -* GitHub: https://github.com/certara/tidyvpc -* Source code: https://github.com/cran/tidyvpc -* Date/Publication: 2024-01-18 13:10:02 UTC -* Number of recursive dependencies: 173 - -Run `revdepcheck::cloud_details(, "tidyvpc")` for more info - -
- -## In both - -* checking whether package ‘tidyvpc’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/tidyvpc/new/tidyvpc.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘tidyvpc’ ... -** package ‘tidyvpc’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘tidyvpc’ -* removing ‘/tmp/workdir/tidyvpc/new/tidyvpc.Rcheck/tidyvpc’ - - -``` -### CRAN - -``` -* installing *source* package ‘tidyvpc’ ... -** package ‘tidyvpc’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘tidyvpc’ -* removing ‘/tmp/workdir/tidyvpc/old/tidyvpc.Rcheck/tidyvpc’ - - -``` -# tramicp - -
- -* Version: 0.0-2 -* GitHub: NA -* Source code: https://github.com/cran/tramicp -* Date/Publication: 2024-03-14 15:30:02 UTC -* Number of recursive dependencies: 58 - -Run `revdepcheck::cloud_details(, "tramicp")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/tramicp/new/tramicp.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘tramicp/DESCRIPTION’ ... OK -... -* this is package ‘tramicp’ version ‘0.0-2’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Packages required but not available: 'tram', 'mlt', 'cotram' - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/tramicp/old/tramicp.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘tramicp/DESCRIPTION’ ... OK -... -* this is package ‘tramicp’ version ‘0.0-2’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Packages required but not available: 'tram', 'mlt', 'cotram' - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -# tramvs - -
- -* Version: 0.0-6 -* GitHub: NA -* Source code: https://github.com/cran/tramvs -* Date/Publication: 2024-09-04 13:50:02 UTC -* Number of recursive dependencies: 105 - -Run `revdepcheck::cloud_details(, "tramvs")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/tramvs/new/tramvs.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘tramvs/DESCRIPTION’ ... OK -... -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Packages required but not available: 'tram', 'cotram' - -Package suggested but not available for checking: ‘mlt’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/tramvs/old/tramvs.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘tramvs/DESCRIPTION’ ... OK -... -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Packages required but not available: 'tram', 'cotram' - -Package suggested but not available for checking: ‘mlt’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -# TriDimRegression - -
- -* Version: 1.0.2 -* GitHub: https://github.com/alexander-pastukhov/tridim-regression -* Source code: https://github.com/cran/TriDimRegression -* Date/Publication: 2023-09-13 14:10:03 UTC -* Number of recursive dependencies: 98 - -Run `revdepcheck::cloud_details(, "TriDimRegression")` for more info - -
- -## In both - -* checking whether package ‘TriDimRegression’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/TriDimRegression/new/TriDimRegression.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘TriDimRegression’ ... -** package ‘TriDimRegression’ successfully unpacked and MD5 sums checked -** using staged installation -Error in loadNamespace(x) : there is no package called ‘rstantools’ -Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart -Execution halted -ERROR: configuration failed for package ‘TriDimRegression’ -* removing ‘/tmp/workdir/TriDimRegression/new/TriDimRegression.Rcheck/TriDimRegression’ - - -``` -### CRAN - -``` -* installing *source* package ‘TriDimRegression’ ... -** package ‘TriDimRegression’ successfully unpacked and MD5 sums checked -** using staged installation -Error in loadNamespace(x) : there is no package called ‘rstantools’ -Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart -Execution halted -ERROR: configuration failed for package ‘TriDimRegression’ -* removing ‘/tmp/workdir/TriDimRegression/old/TriDimRegression.Rcheck/TriDimRegression’ - - -``` -# TSrepr - -
- -* Version: 1.1.0 -* GitHub: https://github.com/PetoLau/TSrepr -* Source code: https://github.com/cran/TSrepr -* Date/Publication: 2020-07-13 06:50:15 UTC -* Number of recursive dependencies: 71 - -Run `revdepcheck::cloud_details(, "TSrepr")` for more info - -
- -## In both - -* checking whether package ‘TSrepr’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/TSrepr/new/TSrepr.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘TSrepr’ ... -** package ‘TSrepr’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c FeatureClippingTrending.cpp -o FeatureClippingTrending.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c helpers.cpp -o helpers.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c measures.cpp -o measures.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c normalizations.cpp -o normalizations.o -... -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘TSrepr’ -* removing ‘/tmp/workdir/TSrepr/new/TSrepr.Rcheck/TSrepr’ - - -``` -### CRAN - -``` -* installing *source* package ‘TSrepr’ ... -** package ‘TSrepr’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c FeatureClippingTrending.cpp -o FeatureClippingTrending.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c helpers.cpp -o helpers.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c measures.cpp -o measures.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c normalizations.cpp -o normalizations.o -... -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘TSrepr’ -* removing ‘/tmp/workdir/TSrepr/old/TSrepr.Rcheck/TSrepr’ - - -``` -# visa - -
- -* Version: 0.1.0 -* GitHub: https://github.com/kang-yu/visa -* Source code: https://github.com/cran/visa -* Date/Publication: 2021-04-20 07:20:02 UTC -* Number of recursive dependencies: 139 - -Run `revdepcheck::cloud_details(, "visa")` for more info - -
- -## In both - -* checking whether package ‘visa’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/visa/new/visa.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘visa’ ... -** package ‘visa’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘visa’ -* removing ‘/tmp/workdir/visa/new/visa.Rcheck/visa’ - - -``` -### CRAN - -``` -* installing *source* package ‘visa’ ... -** package ‘visa’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘visa’ -* removing ‘/tmp/workdir/visa/old/visa.Rcheck/visa’ - - -``` -# wally - -
- -* Version: 1.0.10 -* GitHub: NA -* Source code: https://github.com/cran/wally -* Date/Publication: 2019-10-30 14:40:02 UTC -* Number of recursive dependencies: 116 - -Run `revdepcheck::cloud_details(, "wally")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/wally/new/wally.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘wally/DESCRIPTION’ ... OK -... -* checking extension type ... Package -* this is package ‘wally’ version ‘1.0.10’ -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘riskRegression’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/wally/old/wally.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘wally/DESCRIPTION’ ... OK -... -* checking extension type ... Package -* this is package ‘wally’ version ‘1.0.10’ -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘riskRegression’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -# zen4R - -
- -* Version: 0.10 -* GitHub: https://github.com/eblondel/zen4R -* Source code: https://github.com/cran/zen4R -* Date/Publication: 2024-06-05 16:50:02 UTC -* Number of recursive dependencies: 74 - -Run `revdepcheck::cloud_details(, "zen4R")` for more info - -
- -## In both - -* checking whether package ‘zen4R’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/zen4R/new/zen4R.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘zen4R’ ... -** package ‘zen4R’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Error in dyn.load(file, DLLpath = DLLpath, ...) : - unable to load shared object '/usr/local/lib/R/site-library/redland/libs/redland.so': - librdf.so.0: cannot open shared object file: No such file or directory -Calls: ... asNamespace -> loadNamespace -> library.dynam -> dyn.load -Execution halted -ERROR: lazy loading failed for package ‘zen4R’ -* removing ‘/tmp/workdir/zen4R/new/zen4R.Rcheck/zen4R’ - - -``` -### CRAN - -``` -* installing *source* package ‘zen4R’ ... -** package ‘zen4R’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Error in dyn.load(file, DLLpath = DLLpath, ...) : - unable to load shared object '/usr/local/lib/R/site-library/redland/libs/redland.so': - librdf.so.0: cannot open shared object file: No such file or directory -Calls: ... asNamespace -> loadNamespace -> library.dynam -> dyn.load -Execution halted -ERROR: lazy loading failed for package ‘zen4R’ -* removing ‘/tmp/workdir/zen4R/old/zen4R.Rcheck/zen4R’ - - -``` +*Wow, no problems at all. :)* \ No newline at end of file diff --git a/revdep/problems.md b/revdep/problems.md index e74e46acd..6d4cd27bb 100644 --- a/revdep/problems.md +++ b/revdep/problems.md @@ -1,85 +1,3 @@ -# admtools - -
- -* Version: 0.4.0 -* GitHub: https://github.com/MindTheGap-ERC/admtools -* Source code: https://github.com/cran/admtools -* Date/Publication: 2024-10-03 23:01:00 UTC -* Number of recursive dependencies: 49 - -Run `revdepcheck::cloud_details(, "admtools")` for more info - -
- -## Newly broken - -* checking tests ... ERROR - ``` - Running ‘spelling.R’ - Running ‘testthat.R’ - Running the tests in ‘tests/testthat.R’ failed. - Complete output: - > # This file is part of the standard setup for testthat. - > # It is recommended that you do not modify it. - > # - > # Where should you do additional test configuration? - > # Learn more about the roles of various files in: - > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview - ... - i Actually got a with text: - Success has been forced - ── Failure ('test_is_sac.R:3:3'): returns true for correct input ─────────────── - Expected `sac` to run without any conditions. - i Actually got a with text: - Success has been forced - - [ FAIL 4 | WARN 0 | SKIP 0 | PASS 209 ] - Error: Test failures - Execution halted - ``` - -# adproclus - -
- -* Version: 2.0.0 -* GitHub: https://github.com/henry-heppe/adproclus -* Source code: https://github.com/cran/adproclus -* Date/Publication: 2024-08-17 18:00:01 UTC -* Number of recursive dependencies: 135 - -Run `revdepcheck::cloud_details(, "adproclus")` for more info - -
- -## Newly broken - -* checking tests ... ERROR - ``` - Running ‘testthat.R’ - Running the tests in ‘tests/testthat.R’ failed. - Complete output: - > # This file is part of the standard setup for testthat. - > # It is recommended that you do not modify it. - > # - > # Where should you do additional test configuration? - > # Learn more about the roles of various files in: - > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview - > # * https://testthat.r-lib.org/articles/special-files.html - ... - i Actually got a with text: - Success has been forced - ── Failure ('test-visualize.R:52:9'): Scree plots low dimensional ────────────── - Expected `plot_scree_adpc(model_selection, grid = TRUE)` to run without any conditions. - i Actually got a with text: - Success has been forced - - [ FAIL 28 | WARN 0 | SKIP 0 | PASS 47 ] - Error: Test failures - Execution halted - ``` - # arrow
@@ -136,191 +54,17 @@ Run `revdepcheck::cloud_details(, "arrow")` for more info Package unavailable to check Rd xrefs: ‘readr’ ``` -# bmgarch - -
- -* Version: 2.0.0 -* GitHub: https://github.com/ph-rast/bmgarch -* Source code: https://github.com/cran/bmgarch -* Date/Publication: 2023-09-12 00:40:02 UTC -* Number of recursive dependencies: 81 - -Run `revdepcheck::cloud_details(, "bmgarch")` for more info - -
- -## Newly broken - -* checking whether package ‘bmgarch’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/bmgarch/new/bmgarch.Rcheck/00install.out’ for details. - ``` - -## Newly fixed - -* checking installed package size ... NOTE - ``` - installed size is 304.9Mb - sub-directories of 1Mb or more: - libs 304.1Mb - ``` - -* checking for GNU extensions in Makefiles ... NOTE - ``` - GNU make is a SystemRequirements. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘bmgarch’ ... -** package ‘bmgarch’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -using C++17 - - -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I"../inst/include" -I"/usr/local/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/usr/local/lib/R/site-library/BH/include' -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppParallel/include' -I'/usr/local/lib/R/site-library/RcppEigen/include' -I'/usr/local/lib/R/site-library/rstan/include' -I'/usr/local/lib/R/site-library/StanHeaders/include' -I/usr/local/include -I'/usr/local/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -In file included from /usr/local/lib/R/site-library/RcppEigen/include/Eigen/Core:205, -... -/usr/local/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:0: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_DCCMGARCH_namespace::model_DCCMGARCH; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’ -/usr/local/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:0: required from here -/usr/local/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] - 654 | return internal::first_aligned::alignment),Derived>(m); - | ^~~~~~~~~ -g++: fatal error: Killed signal terminated program cc1plus -compilation terminated. -make: *** [/opt/R/4.3.1/lib/R/etc/Makeconf:198: stanExports_DCCMGARCH.o] Error 1 -ERROR: compilation failed for package ‘bmgarch’ -* removing ‘/tmp/workdir/bmgarch/new/bmgarch.Rcheck/bmgarch’ - - -``` -### CRAN - -``` -* installing *source* package ‘bmgarch’ ... -** package ‘bmgarch’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -using C++17 - - -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I"../inst/include" -I"/usr/local/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/usr/local/lib/R/site-library/BH/include' -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppParallel/include' -I'/usr/local/lib/R/site-library/RcppEigen/include' -I'/usr/local/lib/R/site-library/rstan/include' -I'/usr/local/lib/R/site-library/StanHeaders/include' -I/usr/local/include -I'/usr/local/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -In file included from /usr/local/lib/R/site-library/RcppEigen/include/Eigen/Core:205, -... -** inst -** byte-compile and prepare package for lazy loading -** help -*** installing help indices -** building package indices -** testing if installed package can be loaded from temporary location -** checking absolute paths in shared objects and dynamic libraries -** testing if installed package can be loaded from final location -** testing if installed package keeps a record of temporary installation path -* DONE (bmgarch) - - -``` -# bonsai - -
- -* Version: 0.3.1 -* GitHub: https://github.com/tidymodels/bonsai -* Source code: https://github.com/cran/bonsai -* Date/Publication: 2024-07-23 15:00:01 UTC -* Number of recursive dependencies: 135 - -Run `revdepcheck::cloud_details(, "bonsai")` for more info - -
- -## Newly broken - -* checking tests ... ERROR - ``` - Running ‘testthat.R’ - Running the tests in ‘tests/testthat.R’ failed. - Complete output: - > library(testthat) - > library(bonsai) - Loading required package: parsnip - > - > test_check("bonsai") - [ FAIL 4 | WARN 0 | SKIP 6 | PASS 78 ] - - ... - i Actually got a with text: - Success has been forced - ── Failure ('test-aorsf.R:102:3'): classification model object ───────────────── - Expected `... <- NULL` to run without any conditions. - i Actually got a with text: - Success has been forced - - [ FAIL 4 | WARN 0 | SKIP 6 | PASS 78 ] - Error: Test failures - Execution halted - ``` - -# cfr - -
- -* Version: 0.1.2 -* GitHub: https://github.com/epiverse-trace/cfr -* Source code: https://github.com/cran/cfr -* Date/Publication: 2024-09-26 09:50:02 UTC -* Number of recursive dependencies: 86 - -Run `revdepcheck::cloud_details(, "cfr")` for more info - -
- -## Newly broken - -* checking tests ... ERROR - ``` - Running ‘spelling.R’ - Running ‘testthat.R’ - Running the tests in ‘tests/testthat.R’ failed. - Complete output: - > # This file is part of the standard setup for testthat. - > # It is recommended that you do not modify it. - > # - > # Where should you do additional test configuration? - > # Learn more about the roles of various files in: - > # * https://r-pkgs.org/tests.html - ... - i Actually got a with text: - Success has been forced - ── Failure ('test-prepare_data.R:119:3'): Prepare grouped `` data ── - Expected `prepare_data(...)` to run without any conditions. - i Actually got a with text: - Success has been forced - - [ FAIL 4 | WARN 2 | SKIP 11 | PASS 108 ] - Error: Test failures - Execution halted - ``` - -# chainbinomial +# epiCo
-* Version: 0.1.5 -* GitHub: NA -* Source code: https://github.com/cran/chainbinomial -* Date/Publication: 2024-05-27 17:40:09 UTC -* Number of recursive dependencies: 56 +* Version: 1.0.0 +* GitHub: https://github.com/epiverse-trace/epiCo +* Source code: https://github.com/cran/epiCo +* Date/Publication: 2024-06-28 09:40:05 UTC +* Number of recursive dependencies: 128 -Run `revdepcheck::cloud_details(, "chainbinomial")` for more info +Run `revdepcheck::cloud_details(, "epiCo")` for more info
@@ -339,55 +83,14 @@ Run `revdepcheck::cloud_details(, "chainbinomial")` for more info > # * https://r-pkgs.org/tests.html > # * https://testthat.r-lib.org/reference/test_package.html#special-files ... - i Actually got a with text: - Success has been forced - ── Failure ('test_1.R:1150:3'): making predictions ───────────────────────────── - Expected `... <- NULL` to run without any conditions. - i Actually got a with text: - Success has been forced - - [ FAIL 63 | WARN 0 | SKIP 0 | PASS 471 ] - Error: Test failures - Execution halted - ``` - -# charlatan - -
- -* Version: 0.6.1 -* GitHub: https://github.com/ropensci/charlatan -* Source code: https://github.com/cran/charlatan -* Date/Publication: 2024-10-17 05:20:02 UTC -* Number of recursive dependencies: 56 - -Run `revdepcheck::cloud_details(, "charlatan")` for more info - -
- -## Newly broken - -* checking tests ... ERROR - ``` - Running ‘spelling.R’ - Running ‘test-all.R’ - Running the tests in ‘tests/test-all.R’ failed. - Complete output: - > library("testthat") - > test_check("charlatan") - Loading required package: charlatan - [ FAIL 7 | WARN 0 | SKIP 4 | PASS 2017 ] - - ══ Skipped tests (4) ═══════════════════════════════════════════════════════════ - ... - i Actually got a with text: - Success has been forced - ── Failure ('test-backwards-comp.R:97:3'): fakir revdep still works ──────────── - Expected `ch_name(1)` to run without any conditions. - i Actually got a with text: - Success has been forced + ▆ + 1. └─testthat::expect_message(...) at test-spatiotemporal.R:78:3 + 2. └─testthat:::expect_condition_matching(...) + 3. └─testthat:::cnd_matcher(...) + 4. └─cli::cli_abort(...) + 5. └─rlang::abort(...) - [ FAIL 7 | WARN 0 | SKIP 4 | PASS 2017 ] + [ FAIL 1 | WARN 8 | SKIP 0 | PASS 114 ] Error: Test failures Execution halted ``` @@ -396,90 +99,64 @@ Run `revdepcheck::cloud_details(, "charlatan")` for more info * checking installed package size ... NOTE ``` - installed size is 12.5Mb + installed size is 6.2Mb sub-directories of 1Mb or more: - R 7.5Mb - doc 3.2Mb - help 1.5Mb + data 2.0Mb + extdata 2.9Mb ``` -# covidcast +# ieegio
-* Version: 0.5.2 -* GitHub: https://github.com/cmu-delphi/covidcast -* Source code: https://github.com/cran/covidcast -* Date/Publication: 2023-07-12 23:40:06 UTC -* Number of recursive dependencies: 92 +* Version: 0.0.2 +* GitHub: https://github.com/dipterix/ieegio +* Source code: https://github.com/cran/ieegio +* Date/Publication: 2024-10-31 23:20:02 UTC +* Number of recursive dependencies: 88 -Run `revdepcheck::cloud_details(, "covidcast")` for more info +Run `revdepcheck::cloud_details(, "ieegio")` for more info
## Newly broken -* checking running R code from vignettes ... ERROR +* checking examples ... ERROR ``` - Errors in running code in vignettes: - when running code in ‘multi-signals.Rmd’ - ... - - > signals <- covidcast_signals(data_source = "jhu-csse", - + signal = c("confirmed_7dav_incidence_prop", "deaths_7dav_incidence_prop"), - + star .... [TRUNCATED] + Running examples in ‘ieegio-Ex.R’ failed + The error most likely occurred in: - When sourcing ‘multi-signals.R’: - Error: Rate limit exceeded when fetching data from API anonymously. See the "API keys" section of the `covidcast_signal()` documentation for information on registering for an API key. + > ### Name: imaging-volume + > ### Title: Read and write volume data + > ### Aliases: imaging-volume read_volume write_volume io_read_mgz + > ### io_write_mgz io_write_mgz.ieegio_volume io_write_mgz.ieegio_mgh + > ### io_write_mgz.nifti io_write_mgz.niftiImage + > ### io_write_mgz.ants.core.ants_image.ANTsImage io_write_mgz.array + > ### io_read_nii io_write_nii io_write_nii.ieegio_nifti ... - Error: Rate limit exceeded when fetching data from API anonymously. See the "API keys" section of the `covidcast_signal()` documentation for information on registering for an API key. - ℹ Message from server: - ℹ Rate limit exceeded for anonymous queries. To remove this limit, register a free API key at https://api.delphi.cmu.edu/epidata/admin/registration_form + + # clean up + + unlink(f) + + unlink(f2) + + + + } + + Warning in check_forbidden_install("Conda Environments") : + cannot install Conda Environments during R CMD check + Error: Unable to find conda binary. Is Anaconda installed? Execution halted - - ‘correlation-utils.Rmd’ using ‘UTF-8’... OK - ‘covidcast.Rmd’ using ‘UTF-8’... OK - ‘external-data.Rmd’ using ‘UTF-8’... OK - ‘multi-signals.Rmd’ using ‘UTF-8’... failed - ‘plotting-signals.Rmd’ using ‘UTF-8’... failed - ``` - -* checking re-building of vignette outputs ... NOTE - ``` - Error(s) in re-building vignettes: - --- re-building ‘correlation-utils.Rmd’ using rmarkdown - --- finished re-building ‘correlation-utils.Rmd’ - - --- re-building ‘covidcast.Rmd’ using rmarkdown - - Quitting from lines 38-45 [unnamed-chunk-1] (covidcast.Rmd) - Error: processing vignette 'covidcast.Rmd' failed with diagnostics: - Rate limit exceeded when fetching data from API anonymously. See the "API keys" section of the `covidcast_signal()` documentation for information on registering for an API key. - ℹ Message from server: - ℹ Rate limit exceeded for anonymous queries. To remove this limit, register a free API key at https://api.delphi.cmu.edu/epidata/admin/registration_form - --- failed re-building ‘covidcast.Rmd’ - - --- re-building ‘external-data.Rmd’ using rmarkdown - ``` - -## In both - -* checking data for non-ASCII characters ... NOTE - ``` - Note: found 20 marked UTF-8 strings ``` -# cryptoQuotes +# madrat
-* Version: 1.3.2 -* GitHub: https://github.com/serkor1/cryptoQuotes -* Source code: https://github.com/cran/cryptoQuotes -* Date/Publication: 2024-11-07 12:30:11 UTC -* Number of recursive dependencies: 126 +* Version: 3.6.4 +* GitHub: https://github.com/pik-piam/madrat +* Source code: https://github.com/cran/madrat +* Date/Publication: 2023-08-23 14:30:08 UTC +* Number of recursive dependencies: 79 -Run `revdepcheck::cloud_details(, "cryptoQuotes")` for more info +Run `revdepcheck::cloud_details(, "madrat")` for more info
@@ -490,1287 +167,37 @@ Run `revdepcheck::cloud_details(, "cryptoQuotes")` for more info Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: - > # This file is part of the standard setup for testthat. - > # It is recommended that you do not modify it. - > # - > # Where should you do additional test configuration? - > # Learn more about the roles of various files in: - > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview - > # * https://testthat.r-lib.org/articles/special-files.html + > library(testthat) + > library(madrat) + Loading required package: magclass + > + > test_check("madrat") + [ FAIL 3 | WARN 2 | SKIP 8 | PASS 581 ] + ... - i Actually got a with text: - Success has been forced - ── Failure ('test-charting.R:146:5'): Charting with ohlc bars and indicators ─── - Expected `test_chart` to run without any conditions. - i Actually got a with text: - Success has been forced - [ FAIL 2 | WARN 0 | SKIP 15 | PASS 43 ] + `dim(actual)` is an integer vector (1, 1, 1) + `dim(expected)` is absent + + `dimnames(actual)` is a list + `dimnames(expected)` is absent + + [ FAIL 3 | WARN 2 | SKIP 8 | PASS 581 ] Error: Test failures Execution halted ``` -## In both - -* checking installed package size ... NOTE - ``` - installed size is 13.1Mb - sub-directories of 1Mb or more: - doc 11.7Mb - help 1.2Mb - ``` - -# diseasystore +# vines
-* Version: 0.2.2 -* GitHub: https://github.com/ssi-dk/diseasystore -* Source code: https://github.com/cran/diseasystore -* Date/Publication: 2024-07-15 12:00:02 UTC -* Number of recursive dependencies: 130 +* Version: 1.1.5 +* GitHub: https://github.com/yasserglez/vines +* Source code: https://github.com/cran/vines +* Date/Publication: 2016-07-28 11:49:43 +* Number of recursive dependencies: 41 -Run `revdepcheck::cloud_details(, "diseasystore")` for more info - -
- -## Newly broken - -* checking tests ... ERROR - ``` - Running ‘spelling.R’ - Running ‘testthat.R’ - Running the tests in ‘tests/testthat.R’ failed. - Complete output: - > # This file is part of the standard setup for testthat. - > # It is recommended that you do not modify it. - > # - > # Where should you do additional test configuration? - > # Learn more about the roles of various files in: - > # * https://r-pkgs.org/tests.html - ... - ── Failure ('test-0_documentation.R:10:7'): rd_templates works ───────────────── - Expected `do.call(rd_fun, args = list(type = type))` to run without any conditions. - i Actually got a with text: - Success has been forced - - [ FAIL 43 | WARN 0 | SKIP 1 | PASS 533 ] - Error: Test failures - In addition: Warning message: - call dbDisconnect() when finished working with a connection - Execution halted - ``` - -# divvy - -
- -* Version: 1.0.0 -* GitHub: https://github.com/GawainAntell/divvy -* Source code: https://github.com/cran/divvy -* Date/Publication: 2023-10-26 08:20:03 UTC -* Number of recursive dependencies: 91 - -Run `revdepcheck::cloud_details(, "divvy")` for more info - -
- -## Newly broken - -* checking tests ... ERROR - ``` - Running ‘testthat.R’ - Running the tests in ‘tests/testthat.R’ failed. - Complete output: - > library(testthat) - > library(divvy) - > - > test_check("divvy") - [ FAIL 5 | WARN 0 | SKIP 0 | PASS 32 ] - - ══ Failed tests ════════════════════════════════════════════════════════════════ - ... - i Actually got a with text: - Success has been forced - ── Failure ('test_subsample.R:64:3'): projected coords ok ────────────────────── - Expected `bandit(...)` to run without any conditions. - i Actually got a with text: - Success has been forced - - [ FAIL 5 | WARN 0 | SKIP 0 | PASS 32 ] - Error: Test failures - Execution halted - ``` - -## In both - -* checking Rd cross-references ... NOTE - ``` - Package unavailable to check Rd xrefs: ‘palaeoverse’ - ``` - -# dsmmR - -
- -* Version: 1.0.5 -* GitHub: https://github.com/Mavrogiannis-Ioannis/dsmmR -* Source code: https://github.com/cran/dsmmR -* Date/Publication: 2024-07-28 00:20:01 UTC -* Number of recursive dependencies: 44 - -Run `revdepcheck::cloud_details(, "dsmmR")` for more info - -
- -## Newly broken - -* checking tests ... ERROR - ``` - Running ‘testthat.R’ - Running the tests in ‘tests/testthat.R’ failed. - Complete output: - > # This file is part of the standard setup for testthat. - > # It is recommended that you do not modify it. - > # - > # Where should you do additional test configuration? - > # Learn more about the roles of various files in: - > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview - > # * https://testthat.r-lib.org/articles/special-files.html - ... - i Actually got a with text: - Success has been forced - ── Failure ('test-parametric_dsmm.R:176:5'): parametric_dsmm(); p is not drifting, f is drifting. ── - Expected `... <- NULL` to run without any conditions. - i Actually got a with text: - Success has been forced - - [ FAIL 12 | WARN 0 | SKIP 12 | PASS 15 ] - Error: Test failures - Execution halted - ``` - -# ecocbo - -
- -* Version: 0.12.0 -* GitHub: NA -* Source code: https://github.com/cran/ecocbo -* Date/Publication: 2024-08-21 08:00:02 UTC -* Number of recursive dependencies: 114 - -Run `revdepcheck::cloud_details(, "ecocbo")` for more info - -
- -## Newly broken - -* checking tests ... ERROR - ``` - Running ‘testthat.R’ - Running the tests in ‘tests/testthat.R’ failed. - Complete output: - > # This file is part of the standard setup for testthat. - > # It is recommended that you do not modify it. - > # - > # Where should you do additional test configuration? - > # Learn more about the roles of various files in: - > # * https://r-pkgs.org/tests.html - > # * https://testthat.r-lib.org/reference/test_package.html#special-files - ... - i Actually got a with text: - Success has been forced - ── Failure ('test-sim_cbo.R:6:3'): function works in its two modes ───────────── - Expected `sim_cbo(compVar, multSE = 0.14, ck = 100, cj = 2500)` to run without any conditions. - i Actually got a with text: - Success has been forced - - [ FAIL 4 | WARN 0 | SKIP 0 | PASS 23 ] - Error: Test failures - Execution halted - ``` - -# epiCo - -
- -* Version: 1.0.0 -* GitHub: https://github.com/epiverse-trace/epiCo -* Source code: https://github.com/cran/epiCo -* Date/Publication: 2024-06-28 09:40:05 UTC -* Number of recursive dependencies: 128 - -Run `revdepcheck::cloud_details(, "epiCo")` for more info - -
- -## Newly broken - -* checking tests ... ERROR - ``` - Running ‘testthat.R’ - Running the tests in ‘tests/testthat.R’ failed. - Complete output: - > # This file is part of the standard setup for testthat. - > # It is recommended that you do not modify it. - > # - > # Where should you do additional test configuration? - > # Learn more about the roles of various files in: - > # * https://r-pkgs.org/tests.html - > # * https://testthat.r-lib.org/reference/test_package.html#special-files - ... - ▆ - 1. └─testthat::expect_message(...) at test-spatiotemporal.R:78:3 - 2. └─testthat:::expect_condition_matching(...) - 3. └─testthat:::cnd_matcher(...) - 4. └─cli::cli_abort(...) - 5. └─rlang::abort(...) - - [ FAIL 1 | WARN 8 | SKIP 0 | PASS 114 ] - Error: Test failures - Execution halted - ``` - -## In both - -* checking installed package size ... NOTE - ``` - installed size is 6.2Mb - sub-directories of 1Mb or more: - data 2.0Mb - extdata 2.9Mb - ``` - -# ergm - -
- -* Version: 4.7.5 -* GitHub: https://github.com/statnet/ergm -* Source code: https://github.com/cran/ergm -* Date/Publication: 2024-11-06 14:10:05 UTC -* Number of recursive dependencies: 87 - -Run `revdepcheck::cloud_details(, "ergm")` for more info - -
- -## Newly broken - -* checking tests ... ERROR - ``` - Running ‘requireNamespaceTest.R’ - Running ‘testthat.R’ - Running the tests in ‘tests/testthat.R’ failed. - Complete output: - > # File tests/testthat.R in package ergm, part of the - > # Statnet suite of packages for network analysis, https://statnet.org . - > # - > # This software is distributed under the GPL-3 license. It is free, - > # open source, and has the attribution requirements (GPL Section 7) at - > # https://statnet.org/attribution . - ... - - ══ Failed tests ════════════════════════════════════════════════════════════════ - ── Failure ('test-nonunique-names.R:15:3'): MCMC diagnostics produced even when names are not unique ── - Expected `mcmc.diagnostics(fit)` to run without any conditions. - i Actually got a with text: - Success has been forced - - [ FAIL 1 | WARN 2 | SKIP 0 | PASS 4217 ] - Error: Test failures - Execution halted - ``` - -## In both - -* checking running R code from vignettes ... ERROR - ``` - Errors in running code in vignettes: - when running code in ‘ergm.Rmd’ - ... - Obtaining the responsible dyads. - Evaluating the predictor and response matrix. - Maximizing the pseudolikelihood. - Finished MPLE. - Starting Monte Carlo maximum likelihood estimation (MCMLE): - Iteration 1 of at most 60: - - ... - When sourcing ‘ergm.R’: - Error: Number of edges in a simulated network exceeds that in the observed by a factor of more than 20. This is a strong indicator of model degeneracy or a very poor starting parameter configuration. If you are reasonably certain that neither of these is the case, increase the MCMLE.density.guard control.ergm() parameter. - Execution halted - - ‘Network-Callback-API.Rmd’ using ‘UTF-8’... OK - ‘Proposal-Lookup-API.Rmd’ using ‘UTF-8’... OK - ‘Terms-API.Rmd’ using ‘UTF-8’... OK - ‘ergm-term-crossRef.Rmd’ using ‘UTF-8’... OK - ‘ergm.Rmd’ using ‘UTF-8’... failed - ‘nodal_attributes.Rmd’ using ‘UTF-8’... OK - ``` - -* checking installed package size ... NOTE - ``` - installed size is 8.3Mb - sub-directories of 1Mb or more: - R 1.5Mb - doc 1.6Mb - help 1.6Mb - libs 2.8Mb - ``` - -# ieegio - -
- -* Version: 0.0.2 -* GitHub: https://github.com/dipterix/ieegio -* Source code: https://github.com/cran/ieegio -* Date/Publication: 2024-10-31 23:20:02 UTC -* Number of recursive dependencies: 88 - -Run `revdepcheck::cloud_details(, "ieegio")` for more info - -
- -## Newly broken - -* checking examples ... ERROR - ``` - Running examples in ‘ieegio-Ex.R’ failed - The error most likely occurred in: - - > ### Name: imaging-volume - > ### Title: Read and write volume data - > ### Aliases: imaging-volume read_volume write_volume io_read_mgz - > ### io_write_mgz io_write_mgz.ieegio_volume io_write_mgz.ieegio_mgh - > ### io_write_mgz.nifti io_write_mgz.niftiImage - > ### io_write_mgz.ants.core.ants_image.ANTsImage io_write_mgz.array - > ### io_read_nii io_write_nii io_write_nii.ieegio_nifti - ... - + # clean up - + unlink(f) - + unlink(f2) - + - + } - - Warning in check_forbidden_install("Conda Environments") : - cannot install Conda Environments during R CMD check - Error: Unable to find conda binary. Is Anaconda installed? - Execution halted - ``` - -# infer - -
- -* Version: 1.0.7 -* GitHub: https://github.com/tidymodels/infer -* Source code: https://github.com/cran/infer -* Date/Publication: 2024-03-25 21:50:02 UTC -* Number of recursive dependencies: 126 - -Run `revdepcheck::cloud_details(, "infer")` for more info - -
- -## Newly broken - -* checking tests ... ERROR - ``` - Running ‘testthat.R’ - Running the tests in ‘tests/testthat.R’ failed. - Complete output: - > # This file is part of the standard setup for testthat. - > # It is recommended that you do not modify it. - > # - > # Where should you do additional test configuration? - > # Learn more about the roles of various files in: - > # * https://r-pkgs.org/tests.html - > # * https://testthat.r-lib.org/reference/test_package.html#special-files - ... - • visualize/viz-assume-z-p-val-left.svg - • visualize/viz-assume-z-p-val-right.svg - • visualize/viz-assume-z.svg - • visualize/viz-fit-conf-int.svg - • visualize/viz-fit-no-h0.svg - • visualize/viz-fit-p-val-both.svg - • visualize/viz-fit-p-val-left.svg - • visualize/viz-fit-p-val-right.svg - Error: Test failures - Execution halted - ``` - -# innsight - -
- -* Version: 0.3.0 -* GitHub: https://github.com/bips-hb/innsight -* Source code: https://github.com/cran/innsight -* Date/Publication: 2023-12-21 16:00:02 UTC -* Number of recursive dependencies: 135 - -Run `revdepcheck::cloud_details(, "innsight")` for more info - -
- -## Newly broken - -* checking installed package size ... NOTE - ``` - installed size is 5.2Mb - sub-directories of 1Mb or more: - R 1.5Mb - doc 3.2Mb - ``` - -## In both - -* checking running R code from vignettes ... ERROR - ``` - Errors in running code in vignettes: - when running code in ‘Example_1_iris.Rmd’ - ... - - > set.seed(1111) - - > options(width = 500) - - > torch::torch_manual_seed(1111) - - ... - + 2)), nn_flatten(), nn_li .... [TRUNCATED] - - When sourcing ‘detailed_overview.R’: - Error: Lantern is not loaded. Please use `install_torch()` to install additional dependencies. - Execution halted - - ‘Example_1_iris.Rmd’ using ‘UTF-8’... failed - ‘Example_2_penguin.Rmd’ using ‘UTF-8’... failed - ‘detailed_overview.Rmd’ using ‘UTF-8’... failed - ‘innsight.Rmd’ using ‘UTF-8’... OK - ``` - -# intergraph - -
- -* Version: 2.0-4 -* GitHub: https://github.com/mbojan/intergraph -* Source code: https://github.com/cran/intergraph -* Date/Publication: 2024-02-01 17:30:02 UTC -* Number of recursive dependencies: 61 - -Run `revdepcheck::cloud_details(, "intergraph")` for more info - -
- -## Newly broken - -* checking tests ... ERROR - ``` - Running ‘testthat.R’ - Running the tests in ‘tests/testthat.R’ failed. - Complete output: - > library(testthat) - > library(intergraph) - > - > test_check("intergraph") - [ FAIL 1 | WARN 3 | SKIP 1 | PASS 53 ] - - ══ Skipped tests (1) ═══════════════════════════════════════════════════════════ - ... - - ══ Failed tests ════════════════════════════════════════════════════════════════ - ── Failure ('test-netcompare.R:2:3'): netcompare just works ──────────────────── - Expected `r <- netcompare(exIgraph, exIgraph)` to run without any conditions. - i Actually got a with text: - Success has been forced - - [ FAIL 1 | WARN 3 | SKIP 1 | PASS 53 ] - Error: Test failures - Execution halted - ``` - -# JointFPM - -
- -* Version: 1.2.1 -* GitHub: https://github.com/entjos/JointFPM -* Source code: https://github.com/cran/JointFPM -* Date/Publication: 2024-06-19 21:40:14 UTC -* Number of recursive dependencies: 43 - -Run `revdepcheck::cloud_details(, "JointFPM")` for more info - -
- -## Newly broken - -* checking tests ... ERROR - ``` - Running ‘testthat.R’ - Running the tests in ‘tests/testthat.R’ failed. - Complete output: - > # This file is part of the standard setup for testthat. - > # It is recommended that you do not modify it. - > # - > # Where should you do additional test configuration? - > # Learn more about the roles of various files in: - > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview - > # * https://testthat.r-lib.org/articles/special-files.html - ... - - ══ Failed tests ════════════════════════════════════════════════════════════════ - ── Failure ('test-summary.JointFPM.R:2:3'): Summary output is stable ─────────── - Expected `{ ... }` to run without any conditions. - i Actually got a with text: - Success has been forced - - [ FAIL 1 | WARN 0 | SKIP 13 | PASS 19 ] - Error: Test failures - Execution halted - ``` - -# linelist - -
- -* Version: 1.1.4 -* GitHub: https://github.com/epiverse-trace/linelist -* Source code: https://github.com/cran/linelist -* Date/Publication: 2024-06-17 13:40:04 UTC -* Number of recursive dependencies: 58 - -Run `revdepcheck::cloud_details(, "linelist")` for more info - -
- -## Newly broken - -* checking tests ... ERROR - ``` - Running ‘spelling.R’ - Running ‘testthat.R’ - Running the tests in ‘tests/testthat.R’ failed. - Complete output: - > library(testthat) - > library(linelist) - > - > test_df <- as.data.frame(test_check("linelist")) - Starting 2 test processes - [ FAIL 2 | WARN 0 | SKIP 9 | PASS 132 ] - ... - i Actually got a with text: - Success has been forced - ── Failure ('test-square_bracket.R:128:3'): $<- allows innocuous tag modification ── - Expected `x$speed <- 1L` to run without any conditions. - i Actually got a with text: - Success has been forced - - [ FAIL 2 | WARN 0 | SKIP 9 | PASS 132 ] - Error: Test failures - Execution halted - ``` - -# literanger - -
- -* Version: 0.1.1 -* GitHub: NA -* Source code: https://github.com/cran/literanger -* Date/Publication: 2024-09-22 21:30:05 UTC -* Number of recursive dependencies: 34 - -Run `revdepcheck::cloud_details(, "literanger")` for more info - -
- -## Newly broken - -* checking tests ... ERROR - ``` - Running ‘testthat.R’ - Running the tests in ‘tests/testthat.R’ failed. - Complete output: - > library(testthat) - > library(literanger) - > - > test_check('literanger') - [ FAIL 4 | WARN 0 | SKIP 0 | PASS 225 ] - - ══ Failed tests ════════════════════════════════════════════════════════════════ - ... - ℹ Actually got a with text: - Success has been forced - ── Failure ('test-io.R:31:5'): can read and write a regression forest ────────── - Expected `rf_copy <- read_literanger(file = file_name)` to run without any conditions. - ℹ Actually got a with text: - Success has been forced - - [ FAIL 4 | WARN 0 | SKIP 0 | PASS 225 ] - Error: Test failures - Execution halted - ``` - -## In both - -* checking whether package ‘literanger’ can be installed ... WARNING - ``` - Found the following significant warnings: - /usr/include/c++/13/bits/stl_algobase.h:437:30: warning: ‘void* __builtin_memmove(void*, const void*, long unsigned int)’ writing between 9 and 9223372036854775807 bytes into a region of size 8 overflows the destination [-Wstringop-overflow=] - See ‘/tmp/workdir/literanger/new/literanger.Rcheck/00install.out’ for details. - ``` - -* checking installed package size ... NOTE - ``` - installed size is 14.5Mb - sub-directories of 1Mb or more: - libs 14.3Mb - ``` - -# madrat - -
- -* Version: 3.6.4 -* GitHub: https://github.com/pik-piam/madrat -* Source code: https://github.com/cran/madrat -* Date/Publication: 2023-08-23 14:30:08 UTC -* Number of recursive dependencies: 79 - -Run `revdepcheck::cloud_details(, "madrat")` for more info - -
- -## Newly broken - -* checking tests ... ERROR - ``` - Running ‘testthat.R’ - Running the tests in ‘tests/testthat.R’ failed. - Complete output: - > library(testthat) - > library(madrat) - Loading required package: magclass - > - > test_check("madrat") - [ FAIL 3 | WARN 2 | SKIP 8 | PASS 581 ] - - ... - - `dim(actual)` is an integer vector (1, 1, 1) - `dim(expected)` is absent - - `dimnames(actual)` is a list - `dimnames(expected)` is absent - - [ FAIL 3 | WARN 2 | SKIP 8 | PASS 581 ] - Error: Test failures - Execution halted - ``` - -# OlinkAnalyze - -
- -* Version: 4.0.1 -* GitHub: https://github.com/Olink-Proteomics/OlinkRPackage -* Source code: https://github.com/cran/OlinkAnalyze -* Date/Publication: 2024-09-24 11:50:02 UTC -* Number of recursive dependencies: 207 - -Run `revdepcheck::cloud_details(, "OlinkAnalyze")` for more info - -
- -## Newly broken - -* checking tests ... ERROR - ``` - Running ‘testthat.R’ - Running the tests in ‘tests/testthat.R’ failed. - Complete output: - > library(testthat) - > library(OlinkAnalyze) - > - > test_check("OlinkAnalyze") - Variables and covariates converted from character to factors: Site - ANOVA model fit to each assay: NPX~Site - Variables and covariates converted from character to factors: Time - ... - • linear_mixed_model/lmer-plot.svg - • olink_Pathway_Heatmap/gsea-heatmap.svg - • olink_Pathway_Heatmap/ora-heatmap-with-keyword.svg - • olink_Pathway_Visualization/gsea-vis-with-keyword.svg - • olink_Pathway_Visualization/gsea-visualization.svg - • olink_Pathway_Visualization/ora-vis-with-keyword.svg - • olink_Pathway_Visualization/ora-vis-with-terms.svg - • olink_qc_plot/qc-plot-with-coloroption.svg - Error: Test failures - Execution halted - ``` - -## In both - -* checking running R code from vignettes ... ERROR - ``` - Errors in running code in vignettes: - when running code in ‘Vignett.Rmd’ - ... - lme4 was built with Matrix ABI version 1 - Current Matrix ABI version is 0 - Please re-install lme4 from source or restore original ‘Matrix’ package - Duplicate SampleID(s) detected: - CONTROL_SAMPLE_AS 1 - CONTROL_SAMPLE_AS 2 - - ... - When sourcing ‘Vignett.R’: - Error: function 'cholmod_factor_ldetA' not provided by package 'Matrix' - Execution halted - - ‘LOD.Rmd’ using ‘UTF-8’... OK - ‘OutlierExclusion.Rmd’ using ‘UTF-8’... OK - ‘Vignett.Rmd’ using ‘UTF-8’... failed - ‘bridging_E3072toEHT.Rmd’ using ‘UTF-8’... OK - ‘bridging_introduction.Rmd’ using ‘UTF-8’... OK - ‘plate_randomizer.Rmd’ using ‘UTF-8’... OK - ``` - -* checking re-building of vignette outputs ... NOTE - ``` - Error(s) in re-building vignettes: - --- re-building ‘LOD.Rmd’ using rmarkdown - --- finished re-building ‘LOD.Rmd’ - - --- re-building ‘OutlierExclusion.Rmd’ using rmarkdown - --- finished re-building ‘OutlierExclusion.Rmd’ - - --- re-building ‘Vignett.Rmd’ using rmarkdown - ``` - -# palaeoSig - -
- -* Version: 2.1-3 -* GitHub: https://github.com/richardjtelford/palaeoSig -* Source code: https://github.com/cran/palaeoSig -* Date/Publication: 2023-03-10 09:30:02 UTC -* Number of recursive dependencies: 103 - -Run `revdepcheck::cloud_details(, "palaeoSig")` for more info - -
- -## Newly broken - -* checking tests ... ERROR - ``` - Running ‘testthat.R’ - Running the tests in ‘tests/testthat.R’ failed. - Complete output: - > # This file is part of the standard setup for testthat. - > # It is recommended that you do not modify it. - > # - > # Where should you do additional test configuration? - > # Learn more about the roles of various files in: - > # * https://r-pkgs.org/tests.html - > # * https://testthat.r-lib.org/reference/test_package.html#special-files - ... - i Actually got a with text: - Success has been forced - ── Failure ('test-test-randomTF.R:6:3'): randomTF works ──────────────────────── - Expected `randomTF(...)` to run without any conditions. - i Actually got a with text: - Success has been forced - - [ FAIL 2 | WARN 0 | SKIP 0 | PASS 0 ] - Error: Test failures - Execution halted - ``` - -# posterior - -
- -* Version: 1.6.0 -* GitHub: https://github.com/stan-dev/posterior -* Source code: https://github.com/cran/posterior -* Date/Publication: 2024-07-03 23:00:02 UTC -* Number of recursive dependencies: 118 - -Run `revdepcheck::cloud_details(, "posterior")` for more info - -
- -## Newly broken - -* checking tests ... ERROR - ``` - Running ‘testthat.R’ - Running the tests in ‘tests/testthat.R’ failed. - Complete output: - > library(testthat) - > library(posterior) - This is posterior version 1.6.0 - - Attaching package: 'posterior' - - The following objects are masked from 'package:stats': - ... - - ══ Failed tests ════════════════════════════════════════════════════════════════ - ── Failure ('test-rvar-.R:204:3'): scale_type() works ──────────────────── - Expected `ggplot2::scale_type(rvar())` to run without any conditions. - ℹ Actually got a with text: - Success has been forced - - [ FAIL 1 | WARN 0 | SKIP 5 | PASS 1664 ] - Error: Test failures - Execution halted - ``` - -## In both - -* checking running R code from vignettes ... ERROR - ``` - Errors in running code in vignettes: - when running code in ‘rvar.Rmd’ - ... - > y - rvar<4000>[3] mean ± sd: - [1] 3.00 ± 1.00 2.02 ± 0.99 0.96 ± 0.99 - - > X + y - - When sourcing ‘rvar.R’: - Error: Cannot broadcast array of shape [4000,3,1] to array of shape [4000,4,3]: - All dimensions must be 1 or equal. - Execution halted - - ‘pareto_diagnostics.Rmd’ using ‘UTF-8’... OK - ‘posterior.Rmd’ using ‘UTF-8’... OK - ‘rvar.Rmd’ using ‘UTF-8’... failed - ``` - -# rcausim - -
- -* Version: 0.1.1 -* GitHub: NA -* Source code: https://github.com/cran/rcausim -* Date/Publication: 2024-06-24 15:30:09 UTC -* Number of recursive dependencies: 152 - -Run `revdepcheck::cloud_details(, "rcausim")` for more info - -
- -## Newly broken - -* checking tests ... ERROR - ``` - Running ‘testthat.R’ - Running the tests in ‘tests/testthat.R’ failed. - Complete output: - > # This file is part of the standard setup for testthat. - > # It is recommended that you do not modify it. - > # - > # Where should you do additional test configuration? - > # Learn more about the roles of various files in: - > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview - > # * https://testthat.r-lib.org/articles/special-files.html - ... - i Actually got a with text: - Success has been forced - ── Failure ('test-time_varying.R:406:5'): 'time_varying' handles 'func' where the classes of the generated data can be any classes. ── - Expected `time_varying(functions2, simulated_data, T_max)` to run without any conditions. - i Actually got a with text: - Success has been forced - - [ FAIL 4 | WARN 0 | SKIP 0 | PASS 57 ] - Error: Test failures - Execution halted - ``` - -# rcpptimer - -
- -* Version: 1.2.1 -* GitHub: https://github.com/BerriJ/rcpptimer -* Source code: https://github.com/cran/rcpptimer -* Date/Publication: 2024-09-22 21:40:02 UTC -* Number of recursive dependencies: 42 - -Run `revdepcheck::cloud_details(, "rcpptimer")` for more info - -
- -## Newly broken - -* checking tests ... ERROR - ``` - Running ‘testthat.R’ - Running the tests in ‘tests/testthat.R’ failed. - Complete output: - > Sys.setenv("OMP_THREAD_LIMIT" = 2) - > - > library(testthat) - > library(rcpptimer) - > - > test_check("rcpptimer") - [ FAIL 1 | WARN 0 | SKIP 0 | PASS 90 ] - ... - - ══ Failed tests ════════════════════════════════════════════════════════════════ - ── Failure ('test_print.rcpptimer.R:89:3'): Check wether the print method of the rcpp timer scales correctly ── - Expected `out <- test_misc(tic = FALSE, toc = FALSE, scoped_timer = FALSE)` to run without any conditions. - i Actually got a with text: - Success has been forced - - [ FAIL 1 | WARN 0 | SKIP 0 | PASS 90 ] - Error: Test failures - Execution halted - ``` - -# rdecision - -
- -* Version: 1.2.1 -* GitHub: https://github.com/ajsims1704/rdecision -* Source code: https://github.com/cran/rdecision -* Date/Publication: 2024-06-09 22:10:02 UTC -* Number of recursive dependencies: 88 - -Run `revdepcheck::cloud_details(, "rdecision")` for more info - -
- -## Newly broken - -* checking tests ... ERROR - ``` - Running ‘testthat.R’ - Running the tests in ‘tests/testthat.R’ failed. - Complete output: - > library(testthat) - > library(rdecision) - > test_check("rdecision") - [ FAIL 4 | WARN 0 | SKIP 21 | PASS 1482 ] - - ══ Skipped tests (21) ══════════════════════════════════════════════════════════ - • On CRAN (21): 'test-BetaDistribution.R:89:3', 'test-BetaModVar.R:134:3', - ... - i Actually got a with text: - Success has been forced - ── Failure ('test-DecisionTree.R:486:3'): long node labels are not clipped ───── - Expected `dt$draw(border = TRUE, fontsize = 10)` to run without any conditions. - i Actually got a with text: - Success has been forced - - [ FAIL 4 | WARN 0 | SKIP 21 | PASS 1482 ] - Error: Test failures - Execution halted - ``` - -## In both - -* checking running R code from vignettes ... ERROR - ``` - Errors in running code in vignettes: - when running code in ‘DT00-DecisionTreeTutorial.Rmd’ - ... - > knitr::opts_chunk$set(collapse = TRUE, echo = FALSE, - + comment = "#>") - - > library("rdecision") - - > dt$draw() - - ... - Error: could not find function "gv2png" - Execution halted - - ‘DT00-DecisionTreeTutorial.Rmd’ using ‘UTF-8’... failed - ‘DT01-Sumatriptan.Rmd’ using ‘UTF-8’... failed - ‘DT02-Tegaderm.Rmd’ using ‘UTF-8’... OK - ‘DT03-ShaleGas.Rmd’ using ‘UTF-8’... failed - ‘GT01-NewScientistPuzzle.Rmd’ using ‘UTF-8’... failed - ‘SM01-HIV.Rmd’ using ‘UTF-8’... failed - ‘SM02-TKR.Rmd’ using ‘UTF-8’... failed - ``` - -# REDCapR - -
- -* Version: 1.3.0 -* GitHub: https://github.com/OuhscBbmc/REDCapR -* Source code: https://github.com/cran/REDCapR -* Date/Publication: 2024-10-23 09:10:02 UTC -* Number of recursive dependencies: 94 - -Run `revdepcheck::cloud_details(, "REDCapR")` for more info - -
- -## Newly broken - -* checking tests ... ERROR - ``` - Running ‘spelling.R’ - Running ‘test-all.R’ - Running the tests in ‘tests/test-all.R’ failed. - Complete output: - > # Modeled after the R6 testing structure: https://github.com/wch/R6/blob/master/tests/testthat.R - > library(testthat) - > library(REDCapR) - > # source("R/helpers-testing.R") - > - > # Sys.setenv("redcapr_test_server" = "bbmc") - ... - - ══ Failed tests ════════════════════════════════════════════════════════════════ - ── Failure ('test-validate-field-names.R:43:3'): assert_field_names -good ────── - Expected `assert_field_names(colnames(ds_good))` to run without any conditions. - i Actually got a with text: - Success has been forced - - [ FAIL 1 | WARN 0 | SKIP 252 | PASS 145 ] - Error: Test failures - Execution halted - ``` - -# rgl - -
- -* Version: 1.3.12 -* GitHub: https://github.com/dmurdoch/rgl -* Source code: https://github.com/cran/rgl -* Date/Publication: 2024-10-28 11:40:07 UTC -* Number of recursive dependencies: 107 - -Run `revdepcheck::cloud_details(, "rgl")` for more info - -
- -## Newly broken - -* checking tests ... ERROR - ``` - Running ‘bbox3dtests.R’ - Running ‘boundary.R’ - Running ‘indices.R’ - Running ‘testthat.R’ - Running the tests in ‘tests/testthat.R’ failed. - Complete output: - > if (require(testthat)) { - + library(rgl) - + options(rgl.useNULL = TRUE) - + test_check("rgl") - ... - - ══ Failed tests ════════════════════════════════════════════════════════════════ - ── Failure ('test-getShaders.R:9:2'): getShaders works ───────────────────────── - Expected `getShaders(id)` to run without any conditions. - ℹ Actually got a with text: - Success has been forced - - [ FAIL 1 | WARN 0 | SKIP 0 | PASS 37 ] - Error: Test failures - Execution halted - ``` - -## In both - -* checking installed package size ... NOTE - ``` - installed size is 19.9Mb - sub-directories of 1Mb or more: - R 1.5Mb - doc 7.1Mb - fonts 1.5Mb - help 1.5Mb - libs 4.0Mb - useNULL 3.0Mb - ``` - -# scoringutils - -
- -* Version: 2.0.0 -* GitHub: https://github.com/epiforecasts/scoringutils -* Source code: https://github.com/cran/scoringutils -* Date/Publication: 2024-10-31 20:40:02 UTC -* Number of recursive dependencies: 84 - -Run `revdepcheck::cloud_details(, "scoringutils")` for more info - -
- -## Newly broken - -* checking tests ... ERROR - ``` - Running ‘testthat.R’ - Running the tests in ‘tests/testthat.R’ failed. - Complete output: - > library(testthat) - > library(scoringutils) - scoringutils 2.0.0 introduces major changes. We'd love your feedback! - . To use the old version, - run: `remotes::install_github('epiforecasts/scoringutils@v1.2.2')` - This message is displayed once per session. - > - ... - • get-coverage/plot-quantile-coverage.svg - • get-forecast-counts/plot-available-forecasts.svg - • pairwise_comparison/plot-pairwise-comparison-pval.svg - • pairwise_comparison/plot-pairwise-comparison.svg - • plot_heatmap/plot-heatmap.svg - • plot_wis/plot-wis-flip.svg - • plot_wis/plot-wis-no-relative.svg - • plot_wis/plot-wis.svg - Error: Test failures - Execution halted - ``` - -# sonicscrewdriver - -
- -* Version: 0.0.7 -* GitHub: https://github.com/edwbaker/SonicScrewdriveR -* Source code: https://github.com/cran/sonicscrewdriver -* Date/Publication: 2024-05-11 20:50:02 UTC -* Number of recursive dependencies: 147 - -Run `revdepcheck::cloud_details(, "sonicscrewdriver")` for more info - -
- -## Newly broken - -* checking tests ... ERROR - ``` - Running ‘spelling.R’ - Running ‘testthat.R’ - Running the tests in ‘tests/testthat.R’ failed. - Complete output: - > # This file is part of the standard setup for testthat. - > # It is recommended that you do not modify it. - > # - > # Where should you do additional test configuration? - > # Learn more about the roles of various files in: - > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview - ... - i Actually got a with text: - Success has been forced - ── Failure ('test-sweptsine.R:14:3'): Output in correct format ───────────────── - Expected `validateIsWave(sweptsine(output = "wave"))` to run without any conditions. - i Actually got a with text: - Success has been forced - - [ FAIL 3 | WARN 0 | SKIP 7 | PASS 836 ] - Error: Test failures - Execution halted - ``` - -# StratPal - -
- -* Version: 0.2.0 -* GitHub: https://github.com/MindTheGap-ERC/StratPal -* Source code: https://github.com/cran/StratPal -* Date/Publication: 2024-10-04 06:50:02 UTC -* Number of recursive dependencies: 56 - -Run `revdepcheck::cloud_details(, "StratPal")` for more info - -
- -## Newly broken - -* checking tests ... ERROR - ``` - Running ‘spelling.R’ - Running ‘testthat.R’ - Running the tests in ‘tests/testthat.R’ failed. - Complete output: - > # This file is part of the standard setup for testthat. - > # It is recommended that you do not modify it. - > # - > # Where should you do additional test configuration? - > # Learn more about the roles of various files in: - > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview - ... - i Actually got a with text: - Success has been forced - ── Failure ('test_strict_stasis_sl.R:2:3'): runs without problems ────────────── - Expected `strict_stasis_sl(1:3)` to run without any conditions. - i Actually got a with text: - Success has been forced - - [ FAIL 6 | WARN 0 | SKIP 0 | PASS 66 ] - Error: Test failures - Execution halted - ``` - -# TiPS - -
- -* Version: 1.2.3 -* GitHub: NA -* Source code: https://github.com/cran/TiPS -* Date/Publication: 2023-05-23 14:02:06 UTC -* Number of recursive dependencies: 50 - -Run `revdepcheck::cloud_details(, "TiPS")` for more info - -
- -## Newly broken - -* checking re-building of vignette outputs ... NOTE - ``` - Error(s) in re-building vignettes: - --- re-building ‘TiPS.Rmd’ using rmarkdown - ``` - -## In both - -* checking installed package size ... NOTE - ``` - installed size is 6.7Mb - sub-directories of 1Mb or more: - doc 1.7Mb - libs 4.4Mb - ``` - -# vines - -
- -* Version: 1.1.5 -* GitHub: https://github.com/yasserglez/vines -* Source code: https://github.com/cran/vines -* Date/Publication: 2016-07-28 11:49:43 -* Number of recursive dependencies: 41 - -Run `revdepcheck::cloud_details(, "vines")` for more info +Run `revdepcheck::cloud_details(, "vines")` for more info
@@ -1801,47 +228,6 @@ Run `revdepcheck::cloud_details(, "vines")` for more info Execution halted ``` -# WeightIt - -
- -* Version: 1.3.2 -* GitHub: https://github.com/ngreifer/WeightIt -* Source code: https://github.com/cran/WeightIt -* Date/Publication: 2024-11-05 09:10:03 UTC -* Number of recursive dependencies: 151 - -Run `revdepcheck::cloud_details(, "WeightIt")` for more info - -
- -## Newly broken - -* checking tests ... ERROR - ``` - Running ‘testthat.R’ - Running the tests in ‘tests/testthat.R’ failed. - Complete output: - > # This file is part of the standard setup for testthat. - > # It is recommended that you do not modify it. - > # - > # Where should you do additional test configuration? - > # Learn more about the roles of various files in: - > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview - > # * https://testthat.r-lib.org/articles/special-files.html - ... - i Actually got a with text: - Success has been forced - ── Failure ('test-vcov_arg.R:557:3'): vcov arg works in vcov(), summary(), and anova() for multinom_weightit ── - Expected `anova(fit_asympt, fit_small_hc0, vcov = "asympt")` to run without any conditions. - i Actually got a with text: - Success has been forced - - [ FAIL 61 | WARN 1 | SKIP 0 | PASS 259 ] - Error: Test failures - Execution halted - ``` - # xpose
diff --git a/tests/testthat/test-expect-no-condition.R b/tests/testthat/test-expect-no-condition.R index a52649abc..58718e71e 100644 --- a/tests/testthat/test-expect-no-condition.R +++ b/tests/testthat/test-expect-no-condition.R @@ -10,7 +10,13 @@ test_that("expect_no_* conditions behave as expected", { expect_snapshot_failure(expect_no_error(abort("error"))) expect_snapshot_failure(expect_no_warning(warn("warning"))) expect_snapshot_failure(expect_no_message(inform("message"))) +}) +test_that("expect_no_* pass with pure code", { + expect_no_error(1) + expect_no_warning(1) + expect_no_message(1) + expect_no_condition(1) }) test_that("expect_no_* don't emit success when they fail", { From 886527dcdf673fef9e57218b51af1151201210da Mon Sep 17 00:00:00 2001 From: Hadley Wickham Date: Thu, 7 Nov 2024 15:00:24 -0600 Subject: [PATCH 34/36] Update CRAN comments --- cran-comments.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/cran-comments.md b/cran-comments.md index f7fab3dab..f36f30724 100644 --- a/cran-comments.md +++ b/cran-comments.md @@ -9,4 +9,4 @@ The plan is to remove these calls in the next release, but I wanted to deprecate ## revdepcheck results -We checked all reverse dependencies, comparing R CMD check results across CRAN and dev versions of this package. Unfortunately something is up with our revdep test system and I failed to check ~1200 packages. I'm pretty confident these are bioconductor packages and unrelated to changes to testthat. +We checked all reverse dependencies, comparing R CMD check results across CRAN and dev versions of this package. There were a few failures due to some new strictness and use of internal failures. I've tracked fixes for them at https://github.com/r-lib/testthat/issues/2021. From 1980b17a4c69feaa73bd3397b2bd46569f832a57 Mon Sep 17 00:00:00 2001 From: Hadley Wickham Date: Mon, 25 Nov 2024 16:59:15 -0600 Subject: [PATCH 35/36] Improve `expect_setequal()` implementation To help improve failures on CRAN --- R/expect-setequal.R | 4 ++-- tests/testthat/_snaps/expect-setequal.md | 7 +++++++ tests/testthat/test-expect-setequal.R | 9 +++++++++ 3 files changed, 18 insertions(+), 2 deletions(-) diff --git a/R/expect-setequal.R b/R/expect-setequal.R index cfca84654..54d95143a 100644 --- a/R/expect-setequal.R +++ b/R/expect-setequal.R @@ -35,8 +35,8 @@ expect_setequal <- function(object, expected) { warn("expect_setequal() ignores names") } - act_miss <- setdiff(act$val, exp$val) - exp_miss <- setdiff(exp$val, act$val) + act_miss <- unique(act$val[!act$val %in% exp$val]) + exp_miss <- unique(exp$val[!exp$val %in% act$val]) if (length(exp_miss) || length(act_miss)) { fail(paste0( diff --git a/tests/testthat/_snaps/expect-setequal.md b/tests/testthat/_snaps/expect-setequal.md index 3ea8247ad..87ccd0fe9 100644 --- a/tests/testthat/_snaps/expect-setequal.md +++ b/tests/testthat/_snaps/expect-setequal.md @@ -24,6 +24,13 @@ * Only in `expected`: 3 +--- + + c("a", "a") (`actual`) and c("b", "b", "b") (`expected`) don't have the same values. + * Only in `actual`: "a" + * Only in `expected`: "b" + + # truncates long vectors 1:2 (`actual`) and 1:50 (`expected`) don't have the same values. diff --git a/tests/testthat/test-expect-setequal.R b/tests/testthat/test-expect-setequal.R index 6966822ec..9def76c0e 100644 --- a/tests/testthat/test-expect-setequal.R +++ b/tests/testthat/test-expect-setequal.R @@ -15,6 +15,12 @@ test_that("truncates long differences", { expect_match(cnd$message, "...") }) +test_that("can compare data frames", { + # this isn't really a legit use case but one package does it + df <- data.frame(x = 1:10, y = 10:1) + expect_success(expect_setequal(unname(df), unname(df))) +}) + test_that("warns if both inputs are named", { expect_warning(expect_setequal(c(a = 1), c(b = 1)), "ignores names") }) @@ -29,6 +35,9 @@ test_that("useful message on failure", { expect_snapshot_failure(expect_setequal(1:2, 2)) expect_snapshot_failure(expect_setequal(2, 2:3)) expect_snapshot_failure(expect_setequal(1:2, 2:3)) + + # doesn't repeat values + expect_snapshot_failure(expect_setequal(c("a", "a"), c("b", "b", "b"))) }) test_that("truncates long vectors", { From 46976cc65030200e8472f2d667ee4a9879cb8061 Mon Sep 17 00:00:00 2001 From: Hadley Wickham Date: Mon, 25 Nov 2024 17:01:28 -0600 Subject: [PATCH 36/36] Update for CRAN S7 --- tests/testthat/test-expect-inheritance.R | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/tests/testthat/test-expect-inheritance.R b/tests/testthat/test-expect-inheritance.R index 721b847b0..171d80803 100644 --- a/tests/testthat/test-expect-inheritance.R +++ b/tests/testthat/test-expect-inheritance.R @@ -69,11 +69,11 @@ test_that("checks its inputs", { }) test_that("can check with actual class", { - Foo <- S7::new_class("Foo") - Bar <- S7::new_class("Bar") + Foo <- S7::new_class("Foo", package = NULL) + Bar <- S7::new_class("Bar", package = NULL) expect_success(expect_s7_class(Foo(), class = Foo)) expect_snapshot_failure(expect_s7_class(Foo(), class = Bar)) - Baz <- S7::new_class("Baz", parent = Foo) + Baz <- S7::new_class("Baz", parent = Foo, package = NULL) expect_snapshot_failure(expect_s7_class(Baz(), class = Bar)) })