.gitlab-ci.yml

---

stages:
    - test
    - build
    - test_build
    - deploy
    

build:
    stage: build
    script:
      - docker build --tag ecf_classify:test . 


test_rspec:
  stage: test
  script:
    - bundle install
    - rake build
    - rake install
    - rake spec

test_aruba:
  stage: test
  script:
    - bundle install
    - rake build
    - rake install
    - rake features

test_build_help:
  stage: test_build
  script:
    - docker run --rm ecf_classify:test ecf_classify help

test_build_help_groups:
  stage: test_build
  script:
    - docker run --rm ecf_classify:test ecf_classify help groups


test_build_help_subgroups:
  stage: test_build
  script:
    - docker run --rm ecf_classify:test ecf_classify help subgroups


test_build_exec_groups:
  stage: test_build
  script:
    - docker run --rm -v $(pwd)/spec:/spec ecf_classify:test ecf_classify groups /spec/support/sequences.fa


test_build_exec_subgroups:
  stage: test_build
  script:
    - docker run --rm -v $(pwd)/spec:/spec ecf_classify:test ecf_classify subgroups /spec/support/sequences.fa


test_build_exec_groups_prob:
  stage: test_build
  script:
    - docker run --rm -v $(pwd)/spec:/spec ecf_classify:test ecf_classify groups /spec/support/sequences.fa -p /spec/support/test.prob
    - "[ -e spec/support/test.prob ]"
    - docker run --rm -v $(pwd)/spec:/spec ecf_classify:test rm /spec/support/test.prob

test_build_exec_subgroups_prob:
  stage: test_build
  script:
    - docker run --rm -v $(pwd)/spec:/spec ecf_classify:test ecf_classify subgroups /spec/support/sequences.fa -p /spec/support/test.prob
    - "[ -e spec/support/test.prob ]"
    - docker run --rm -v $(pwd)/spec:/spec ecf_classify:test rm /spec/support/test.prob