code-cover.yml

# This workflow is purely to determine code coverage.
# Since there were issues with the pinned version of older versions of ISIS
# and we really only need to run coverage once (not N times for every combination
# in a test matrix), there is some duplication with the primary testing workflow.

name: Code Coverage

on: [push]

env:
  isis-data: /test-resources/ISISDATA/

jobs:
  coverage:
    runs-on: ubuntu-latest
    defaults:
      run:
        shell: bash -l {0}
    steps:
    - name: Conda setup
      uses: mamba-org/setup-micromamba@v1
      with:
        environment-name: isis
        create-args: >-
          isis=8.0.3
        condarc: |
          channels:
            - usgs-astrogeology
            - conda-forge
          channel-priority: flexible
    - name: Checkout
        uses: actions/checkout@v4
        with:
            ref: ${{ github.event.pull_request.head.sha }}
    - name: Setup test-resources/
      run: |
        mkdir $GITHUB_WORKSPACE/test-resources/
    - name: Download IMG
      run: curl "https://hirise-pds.lpl.arizona.edu/PDS/EDR/PSP/ORB_010500_010599/PSP_010502_2090/PSP_010502_2090_RED5_0.IMG" -o $GITHUB_WORKSPACE/test-resources/PSP_010502_2090_RED5_0.img
    - name: Install kalasiris
      run: pip install -e .
    - name: Test with pytest and generate coverage report
      run: |
        micromamba install -y pytest
        micromamba install -y pytest-cov
        export ISISROOT=$MAMBA_ROOT_PREFIX/envs/isis
        export ISISDATA=$MAMBA_ROOT_PREFIX/envs/isis
        pytest --cov=./kalasiris --cov-report=xml
    - name: Upload coverage to Codecov
      uses: codecov/codecov-action@v4
      with:
        verbse: true
      env:
        CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}