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I think that this issue is not related with pull-submodules.py unless you can reproduce the issue locally.
I think that the references to the branches are somehow not properly updated in the validation pipeline, so the jvonoy-mirror-fix branch is not found or outdated.
A work around is to do a push to the jvonoy-mirror-fix branch in axionlib.
There is not an easy fix for this issue, although I think that can be addressed with this PR #405
It seems that the pull-submodules.py script is not pulling the corresponding branch for jovoy-mirror_fix, which exists inside https://github.com/rest-for-physics/axionlib/tree/jvonoy-mirror_fix
Instead it seems to be pulling the last commit from the axionlib master branch.
https://github.com/rest-for-physics/framework/actions/runs/6001773909/job/16276684495?pr=469
The pipeline is trying to run the following:
But the commit hash corresponds to axionlib:master
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