CI.yaml

name: CI

on:
  push:
    branches:
      - "main"
      - "PyGromosTools_V1"
      - "release3"
  pull_request:
    branches:
      - "main"
      - "PyGromosTools_V1"
      - "release3"
  schedule:
    # Nightly tests run on master by default:
    #   Scheduled workflows run on the latest commit on the default or base branch.
    #   (from https://help.github.com/en/actions/reference/events-that-trigger-workflows#scheduled-events-schedule)
    - cron: "0 0 1 * *"

jobs:
  test:
    name: Test on ${{ matrix.os }}, Python ${{ matrix.python-version }}
    runs-on: ${{ matrix.os }}
    strategy:
      matrix:
        os: [macOS-latest, ubuntu-latest] #, windows-latest
        python-version: [3.7, 3.9.4] #

    steps:
    - uses: actions/checkout@v1

    - name: Additional info about the build
      shell: bash
      run: |
        uname -a
        df -h
        ulimit -a


    - uses: mamba-org/provision-with-micromamba@main
      with:
        python-version: ${{ matrix.python-version }}
        environment-file:  dev/conda_envs/test_env.yaml
        channels: conda-forge,defaults

        activate-environment: pygromosTest
        auto-update-conda: true
        auto-activate-base: false
        show-channel-urls: true

    - name: Install package

      # conda setup requires this special shell
      shell: bash -l {0}
      run: |
        python -m pip install . --no-deps
        conda list


    - name: Run tests

      # conda setup requires this special shell
      shell: bash -l {0}

      run: |
        pytest -v --color=yes pygromos/tests/ --cov=pygromos --cov-report=xml

    - name: CodeCov
      uses: codecov/codecov-action@v1
      with:
        file: ./coverage.xml
        flags: unittests
        name: codecov-${{ matrix.os }}-py${{ matrix.python-version }}