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fails as heatmap tries to plot 2 rows labelled "NA"
testdf <- read_data(test_path("testdata", "completetestset.csv")) daiqobj <- daiquiri::daiquiri_report(testdf, field_types = field_types( col_timepoint_err = ft_ignore(), col_timepoint = ft_timepoint(), col_date_time_err = ft_ignore(), col_date_time = ft_datetime(), col_date_only_err = ft_ignore(), col_date_only = ft_datetime(includes_time = FALSE), col_date_uk_err = ft_ignore(), col_date_uk = ft_datetime(includes_time = FALSE, format = "%d/%m/%Y"), col_id_num_err = ft_ignore(), col_id_num = ft_uniqueidentifier(), col_id_string_err = ft_ignore(), col_id_string = ft_uniqueidentifier(), col_numeric_clean_err = ft_ignore(), col_numeric_clean = ft_numeric(), col_numeric_dirty_err = ft_ignore(), col_numeric_dirty = ft_numeric(), col_numeric_missing_err = ft_ignore(), col_numeric_missing = ft_numeric(), col_categorical_small_err = ft_ignore(), col_categorical_small = ft_strata(), col_categorical_large_err = ft_ignore(), col_categorical_large = ft_categorical(), col_freetext_err = ft_ignore(), col_freetext = ft_freetext(), col_simple_err = ft_ignore(), col_simple = ft_ignore()), override_column_names = FALSE, na = c("","NULL"), aggregation_timeunit = "day", save_directory = "./devtesting/testoutput", save_filename = NULL, show_progress = TRUE) processing file: report_htmldoc.Rmd |............................................................ | 61% [daiquiri-overview-strata] Quitting from lines 278-300 [daiquiri-overview-strata] (report_htmldoc.Rmd) Error in `levels<-`: ! factor level [9] is duplicated Backtrace: 1. daiquiri:::plot_subcat_heatmap_static(...) 3. data.table::`[.data.table`(...) at daiquiri/R/reports.R:487:3 4. base::eval(jsub, SDenv, parent.frame()) 5. base::eval(jsub, SDenv, parent.frame()) 6. base::factor(field_name, levels = agg_fun_subcat_value(heatmap_fields))
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fails as heatmap tries to plot 2 rows labelled "NA"
The text was updated successfully, but these errors were encountered: