study_doi should be replaced by studyPublicationReference

[bomeara]

The documentation says study_doi is supported, but this seems to have been changed to studyPublication by OT.

studies_find_studies(property="ot:study_doi", value="http://dx.doi.org/10.1600/036364411X605092")

leads to

Error: HTTP failure: 400
unrecognized property: ot:study_doiBadInputExceptionorg.neo4j.server.rest.repr.BadInputExceptionlist("org.opentree.oti.plugins.studies_v3.find_studies(studies_v3.java:100)", "java.lang.reflect.Method.invoke(Method.java:498)", "org.neo4j.server.plugins.PluginMethod.invoke(PluginMethod.java:57)", "org.neo4j.server.plugins.PluginManager.invoke(PluginManager.java:168)", "org.neo4j.server.rest.web.ExtensionService.invokeGraphDatabaseExtension(ExtensionService.java:300)", "org.neo4j.server.rest.web.ExtensionService.invokeGraphDatabaseExtension(ExtensionService.java:122)", "java.lang.reflect.Method.invoke(Method.java:498)", 
    "org.neo4j.server.rest.security.SecurityFilter.doFilter(SecurityFilter.java:112)")

whereas

studies_find_studies(property="ot:studyPublication", value="http://dx.doi.org/10.1600/036364411X605092")

leads to

  study_ids n_trees                     tree_ids candidate study_year                                                                                title                                  study_doi
1    pg_719       3 tree1294, tree1295, tree1296  tree1296       2011 Phylogenetic relationships and morphological evolution in Nymphoides (Menyanthaceae) http://dx.doi.org/10.1600/036364411X605092

This affects studies_find_studies, but I think also studies_find_trees. I'm using rotl 3.0.3.

[fmichonneau]

Hi @bomeara

I can't seem to find a reference to study_doi in the context of the properties that can be used to search for trees/studies. I think study_doi is only our name for the column of the table returned by studies_find_studies and studies_find_trees. It can be that the documentation needs to be made clearer!