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how to check software in dragonflye? #32

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xiekunwhy opened this issue May 13, 2024 · 1 comment
Open

how to check software in dragonflye? #32

xiekunwhy opened this issue May 13, 2024 · 1 comment

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@xiekunwhy
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xiekunwhy commented May 13, 2024

Hi,

I don't know how dragonflye check software version. Dragonflye still using system bin path software after conda evn was activated.
source /Bio/User/kxie/software/miniforge3/bin/activate dragonflye
image

Why dragonflye don't use conda enviroment version? Some software in my system are very old.
Like fastp, there are no --unpaired1 --unpaired2 options in early versions, so the pipeline stop with error like following:
image

Best,
Kun

@rpetit3
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rpetit3 commented Aug 14, 2024

Hi @xiekunwhy

Sorry this is so late. I wonder if there is something in your PATH that is before the conda env.

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