diff --git a/vignettes/decoupleR.Rmd b/vignettes/decoupleR.Rmd index cbb02c4..ade1405 100644 --- a/vignettes/decoupleR.Rmd +++ b/vignettes/decoupleR.Rmd @@ -116,9 +116,10 @@ colors.use <- grDevices::colorRampPalette(colors = colors)(100) pheatmap::pheatmap(mat = mat, color = colors.use, border_color = "white", + cluster_rows = FALSE, + cluster_cols = FALSE, cellwidth = 15, cellheight = 15, - cutree_cols = 2, treeheight_row = 0, treeheight_col = 0) ``` @@ -229,6 +230,8 @@ colors.use <- grDevices::colorRampPalette(colors = colors)(100) pheatmap::pheatmap(mat = mat_gsea, color = colors.use, border_color = "white", + cluster_rows = FALSE, + cluster_cols = FALSE, cellwidth = 20, cellheight = 20, treeheight_row = 0, @@ -262,6 +265,8 @@ colors.use <- grDevices::colorRampPalette(colors = colors)(100) pheatmap::pheatmap(mat = mat_ulm, color = colors.use, border_color = "white", + cluster_rows = FALSE, + cluster_cols = FALSE, cellwidth = 20, cellheight = 20, treeheight_row = 0, @@ -308,6 +313,8 @@ colors.use <- grDevices::colorRampPalette(colors = colors)(100) pheatmap::pheatmap(mat = mat_consensus, color = colors.use, border_color = "white", + cluster_rows = FALSE, + cluster_cols = FALSE, cellwidth = 20, cellheight = 20, treeheight_row = 0,