diff --git a/reference.html b/reference.html
index e8760ddd1..c55a353b9 100644
--- a/reference.html
+++ b/reference.html
@@ -8,7 +8,7 @@
- Reference — pypath 0.16.2 documentation
+ Reference — pypath 0.16.3 documentation
@@ -37,7 +37,7 @@
-
+
diff --git a/releasehistory.html b/releasehistory.html
index fac8afe16..b1f53a2c1 100644
--- a/releasehistory.html
+++ b/releasehistory.html
@@ -8,7 +8,7 @@
- Release history — pypath 0.16.2 documentation
+ Release history — pypath 0.16.3 documentation
@@ -37,7 +37,7 @@
-
+
diff --git a/search.html b/search.html
index f20d413c5..7853b6ee5 100644
--- a/search.html
+++ b/search.html
@@ -6,7 +6,7 @@
- Search - pypath 0.16.2 documentation
+ Search - pypath 0.16.3 documentation
@@ -35,7 +35,7 @@
-
+
diff --git a/searchindex.js b/searchindex.js
index c5bff34bf..9f9c653eb 100644
--- a/searchindex.js
+++ b/searchindex.js
@@ -1 +1 @@
-Search.setIndex({"docnames": ["api/pypath", "api/pypath.core", "api/pypath.core.attrs", "api/pypath.core.attrs.AttributeHandler", "api/pypath.core.common", "api/pypath.core.common.filter_network_df", "api/pypath.core.complex", "api/pypath.core.complex.AbstractComplexResource", "api/pypath.core.complex.CellPhoneDB", "api/pypath.core.complex.Cellchatdb", "api/pypath.core.complex.Cellinker", "api/pypath.core.complex.Compleat", "api/pypath.core.complex.ComplexAggregator", "api/pypath.core.complex.ComplexPortal", "api/pypath.core.complex.Corum", "api/pypath.core.complex.GuideToPharmacology", "api/pypath.core.complex.Havugimana", "api/pypath.core.complex.Hpmr", "api/pypath.core.complex.Humap", "api/pypath.core.complex.Humap2", "api/pypath.core.complex.Icellnet", "api/pypath.core.complex.Kegg", "api/pypath.core.complex.Pdb", "api/pypath.core.complex.Signor", "api/pypath.core.complex.Spike", "api/pypath.core.complex.all_complexes", "api/pypath.core.complex.get_db", "api/pypath.core.complex.init_db", "api/pypath.core.entity", "api/pypath.core.entity.Entity", "api/pypath.core.entity.EntityKey", "api/pypath.core.entity.EntityList", "api/pypath.core.enz_sub", "api/pypath.core.enz_sub.EnzymeSubstrateAggregator", "api/pypath.core.enz_sub.EnzymeSubstrateOrthologyProcessor", "api/pypath.core.enz_sub.EnzymeSubstrateProcessor", "api/pypath.core.enz_sub.get_db", "api/pypath.core.enz_sub.init_db", "api/pypath.core.evidence", "api/pypath.core.evidence.Evidence", "api/pypath.core.evidence.Evidences", "api/pypath.core.interaction", "api/pypath.core.interaction.Interaction", "api/pypath.core.interaction.InteractionDataFrameRecord", "api/pypath.core.interaction.InteractionKey", "api/pypath.core.intercell_annot", "api/pypath.core.intercell_annot.excludes", "api/pypath.core.network", "api/pypath.core.network.Network", "api/pypath.core.network.NetworkEntityCollection", "api/pypath.core.network.NetworkStatsRecord", "api/pypath.core.network.get_db", "api/pypath.core.network.init_db", "api/pypath.data", "api/pypath.disclaimer", "api/pypath.info", "api/pypath.inputs", "api/pypath.inputs.abs", "api/pypath.inputs.abs.abs_interactions", "api/pypath.inputs.acsn", "api/pypath.inputs.acsn.acsn_interactions", "api/pypath.inputs.acsn.acsn_interactions_sif", "api/pypath.inputs.adhesome", "api/pypath.inputs.adhesome.adhesome_annotations", "api/pypath.inputs.adhesome.adhesome_interactions", "api/pypath.inputs.adrecs", "api/pypath.inputs.adrecs.AdrecsAdr", "api/pypath.inputs.adrecs.AdrecsChildParent", "api/pypath.inputs.adrecs.AdrecsDrug", "api/pypath.inputs.adrecs.AdrecsDrugAdr", "api/pypath.inputs.adrecs.AdrecsTerm", "api/pypath.inputs.adrecs.adrecs_adr_ontology", "api/pypath.inputs.adrecs.adrecs_drug_adr", "api/pypath.inputs.adrecs.adrecs_drug_identifiers", "api/pypath.inputs.adrecs.adrecs_hierarchy", "api/pypath.inputs.almen2009", "api/pypath.inputs.almen2009.almen2009_annotations", "api/pypath.inputs.baccin2019", "api/pypath.inputs.baccin2019.baccin2019_annotations", "api/pypath.inputs.baccin2019.baccin2019_interactions", "api/pypath.inputs.biogps", "api/pypath.inputs.biogps.BiogpsDataset", "api/pypath.inputs.biogps.biogps_annotations", "api/pypath.inputs.biogps.biogps_datasets", "api/pypath.inputs.biogps.biogps_download", "api/pypath.inputs.biogps.biogps_download_all", "api/pypath.inputs.biogrid", "api/pypath.inputs.biogrid.biogrid_all_interactions", "api/pypath.inputs.biogrid.biogrid_interactions", "api/pypath.inputs.biomart", "api/pypath.inputs.biomart.biomart_homology", "api/pypath.inputs.biomart.biomart_microarray", "api/pypath.inputs.biomart.biomart_microarray_types", "api/pypath.inputs.biomart.biomart_microarrays", "api/pypath.inputs.biomart.biomart_query", "api/pypath.inputs.biomodels", "api/pypath.inputs.biomodels.download_single_model", "api/pypath.inputs.biomodels.get_all_models", "api/pypath.inputs.biomodels.get_biomodels", "api/pypath.inputs.biomodels.get_biomodels_req", "api/pypath.inputs.biomodels.get_single_model", "api/pypath.inputs.ca1", "api/pypath.inputs.ca1.ca1_interactions", "api/pypath.inputs.cancercellmap", "api/pypath.inputs.cancercellmap.ccmap_interactions", "api/pypath.inputs.cancerdrugsdb", "api/pypath.inputs.cancerdrugsdb.cancerdrugsdb_annotations", "api/pypath.inputs.cancerdrugsdb.cancerdrugsdb_download", "api/pypath.inputs.cancerdrugsdb.cancerdrugsdb_interactions", "api/pypath.inputs.cancersea", "api/pypath.inputs.cancersea.cancersea_annotations", "api/pypath.inputs.cell", "api/pypath.inputs.cell.cell_supplementary", "api/pypath.inputs.cellcall", "api/pypath.inputs.cellcall.cellcall_annotations", "api/pypath.inputs.cellcall.cellcall_download", "api/pypath.inputs.cellcall.cellcall_download_all", "api/pypath.inputs.cellcall.cellcall_interactions", "api/pypath.inputs.cellcellinteractions", "api/pypath.inputs.cellcellinteractions.cellcellinteractions_annotations", "api/pypath.inputs.cellchatdb", "api/pypath.inputs.cellchatdb.cellchatdb_annotations", "api/pypath.inputs.cellchatdb.cellchatdb_cofactors", "api/pypath.inputs.cellchatdb.cellchatdb_complexes", "api/pypath.inputs.cellchatdb.cellchatdb_download", "api/pypath.inputs.cellchatdb.cellchatdb_interactions", "api/pypath.inputs.cellinker", "api/pypath.inputs.cellinker.CellinkerInteraction", "api/pypath.inputs.cellinker.cellinker_annotations", "api/pypath.inputs.cellinker.cellinker_complex_annotations", "api/pypath.inputs.cellinker.cellinker_complexes", "api/pypath.inputs.cellinker.cellinker_complexes_raw", "api/pypath.inputs.cellinker.cellinker_lr_interactions", "api/pypath.inputs.cellinker.cellinker_lr_interactions_raw", "api/pypath.inputs.cellinker.cellinker_protein_annotations", "api/pypath.inputs.cellinker.cellinker_smol_interactions", "api/pypath.inputs.cellinker.cellinker_smol_interactions_raw", "api/pypath.inputs.cellinker.components_to_complex", "api/pypath.inputs.cellphonedb", "api/pypath.inputs.cellphonedb.CellPhoneDBAnnotation", "api/pypath.inputs.cellphonedb.cellphonedb_complex_annotations", "api/pypath.inputs.cellphonedb.cellphonedb_complexes", "api/pypath.inputs.cellphonedb.cellphonedb_interactions", "api/pypath.inputs.cellphonedb.cellphonedb_ligands_receptors", "api/pypath.inputs.cellphonedb.cellphonedb_protein_annotations", "api/pypath.inputs.celltalkdb", "api/pypath.inputs.celltalkdb.celltalkdb_annotations", "api/pypath.inputs.celltalkdb.celltalkdb_download", "api/pypath.inputs.celltalkdb.celltalkdb_interactions", "api/pypath.inputs.celltypist", "api/pypath.inputs.celltypist.celltypist_annotations", "api/pypath.inputs.chembl", "api/pypath.inputs.chembl.chembl_activities", "api/pypath.inputs.chembl.chembl_assays", "api/pypath.inputs.chembl.chembl_documents", "api/pypath.inputs.chembl.chembl_drug_indications", "api/pypath.inputs.chembl.chembl_mechanisms", "api/pypath.inputs.chembl.chembl_molecules", "api/pypath.inputs.chembl.chembl_targets", "api/pypath.inputs.clinvar", "api/pypath.inputs.clinvar.clinvar_citations", "api/pypath.inputs.clinvar.clinvar_raw", "api/pypath.inputs.collectri", "api/pypath.inputs.collectri.collectri_interactions", "api/pypath.inputs.collectri.collectri_raw", "api/pypath.inputs.common", "api/pypath.inputs.common.csv_sep_change", "api/pypath.inputs.common.glom_fields", "api/pypath.inputs.common.json_extract", "api/pypath.inputs.common.json_read", "api/pypath.inputs.common.read_table", "api/pypath.inputs.common.read_xls", "api/pypath.inputs.compath", "api/pypath.inputs.compath.compath_mappings", "api/pypath.inputs.compleat", "api/pypath.inputs.compleat.compleat_complexes", "api/pypath.inputs.compleat.compleat_raw", "api/pypath.inputs.complexportal", "api/pypath.inputs.complexportal.complexportal_complexes", "api/pypath.inputs.comppi", "api/pypath.inputs.comppi.comppi_interaction_locations", "api/pypath.inputs.comppi.comppi_locations", "api/pypath.inputs.connectomedb", "api/pypath.inputs.connectomedb.connectomedb_annotations", "api/pypath.inputs.connectomedb.connectomedb_interactions", "api/pypath.inputs.corum", "api/pypath.inputs.corum.corum_complexes", "api/pypath.inputs.cosmic", "api/pypath.inputs.cosmic.cancer_gene_census_annotations", "api/pypath.inputs.cpad", "api/pypath.inputs.cpad.cpad_annotations", "api/pypath.inputs.cpad.cpad_pathway_cancer", "api/pypath.inputs.cpad.get_cpad", "api/pypath.inputs.cpdb", "api/pypath.inputs.cpdb.cpdb_interactions", "api/pypath.inputs.cpdb.cpdb_interactions_ltp", "api/pypath.inputs.credentials", "api/pypath.inputs.credentials.credentials", "api/pypath.inputs.csa", "api/pypath.inputs.csa.get_csa", "api/pypath.inputs.cspa", "api/pypath.inputs.cspa.cspa_annotations", "api/pypath.inputs.cspa.cspa_cell_type_annotations", "api/pypath.inputs.cspa.cspa_cell_types", "api/pypath.inputs.ctdbase", "api/pypath.inputs.ctdbase.ctdbase_relations", "api/pypath.inputs.ctdbase.ctdbase_vocabulary", "api/pypath.inputs.cytosig", "api/pypath.inputs.cytosig.cytosig_annotations", "api/pypath.inputs.cytosig.cytosig_df", "api/pypath.inputs.dbptm", "api/pypath.inputs.dbptm.dbptm_enzyme_substrate", "api/pypath.inputs.dbptm.dbptm_enzyme_substrate_old", "api/pypath.inputs.dbptm.dbptm_interactions", "api/pypath.inputs.ddinter", "api/pypath.inputs.ddinter.ddinter_drug_interactions", "api/pypath.inputs.ddinter.ddinter_identifiers", "api/pypath.inputs.ddinter.ddinter_interactions", "api/pypath.inputs.ddinter.ddinter_mappings", "api/pypath.inputs.ddinter.ddinter_n_drugs", "api/pypath.inputs.deathdomain", "api/pypath.inputs.deathdomain.deathdomain_interactions", "api/pypath.inputs.deathdomain.deathdomain_interactions_rescued", "api/pypath.inputs.depod", "api/pypath.inputs.depod.depod_enzyme_substrate", "api/pypath.inputs.depod.depod_interactions", "api/pypath.inputs.dgidb", "api/pypath.inputs.dgidb.dgidb_annotations", "api/pypath.inputs.dgidb.dgidb_interactions", "api/pypath.inputs.dgidb.get_dgidb_old", "api/pypath.inputs.dip", "api/pypath.inputs.dip.dip_interactions", "api/pypath.inputs.dip.dip_login", "api/pypath.inputs.diseases", "api/pypath.inputs.diseases.diseases_general", "api/pypath.inputs.diseases.experiments_filtered", "api/pypath.inputs.diseases.experiments_full", "api/pypath.inputs.diseases.knowledge_filtered", "api/pypath.inputs.diseases.knowledge_full", "api/pypath.inputs.diseases.textmining_filtered", "api/pypath.inputs.diseases.textmining_full", "api/pypath.inputs.domino", "api/pypath.inputs.domino.domino_ddi", "api/pypath.inputs.domino.domino_enzsub", "api/pypath.inputs.domino.domino_interactions", "api/pypath.inputs.domino.get_domino", "api/pypath.inputs.dorothea", "api/pypath.inputs.dorothea.DorotheaInteraction", "api/pypath.inputs.dorothea.dorothea_full_raw", "api/pypath.inputs.dorothea.dorothea_interactions", "api/pypath.inputs.dorothea.dorothea_interactions_old", "api/pypath.inputs.dorothea.dorothea_old_csv", "api/pypath.inputs.dorothea.dorothea_rda_raw", "api/pypath.inputs.dorothea.get_dorothea_old", "api/pypath.inputs.dorothea.get_tfregulons", "api/pypath.inputs.dorothea.tfregulons_interactions", "api/pypath.inputs.dorothea.tfregulons_interactions_old", "api/pypath.inputs.drugbank", "api/pypath.inputs.drugbank.DrugbankFull", "api/pypath.inputs.drugbank.drugbank_annotations", "api/pypath.inputs.drugbank.drugbank_drugs", "api/pypath.inputs.drugbank.drugbank_interactions", "api/pypath.inputs.drugbank.drugbank_mapping", "api/pypath.inputs.drugbank.drugbank_raw_interactions", "api/pypath.inputs.drugcentral", "api/pypath.inputs.drugcentral.drugcentral_drugs", "api/pypath.inputs.drugcentral.drugcentral_interactions", "api/pypath.inputs.drugcentral.drugcentral_mapping", "api/pypath.inputs.ebi", "api/pypath.inputs.ebi.ebi_rest", "api/pypath.inputs.elm", "api/pypath.inputs.elm.elm_classes", "api/pypath.inputs.elm.elm_domains", "api/pypath.inputs.elm.elm_instances", "api/pypath.inputs.elm.elm_interactions", "api/pypath.inputs.embopress", "api/pypath.inputs.embopress.embopress_supplementary", "api/pypath.inputs.embrace", "api/pypath.inputs.embrace.embrace_annotations", "api/pypath.inputs.embrace.embrace_interactions", "api/pypath.inputs.embrace.embrace_raw", "api/pypath.inputs.embrace.embrace_translated", "api/pypath.inputs.encode", "api/pypath.inputs.encode.encode_tf_mirna_interactions", "api/pypath.inputs.ensembl", "api/pypath.inputs.ensembl.ensembl_organisms", "api/pypath.inputs.eutils", "api/pypath.inputs.eutils.esummary", "api/pypath.inputs.exocarta", "api/pypath.inputs.exocarta.get_exocarta", "api/pypath.inputs.exocarta.get_vesiclepedia", "api/pypath.inputs.expasy", "api/pypath.inputs.expasy.expasy_enzyme_classes", "api/pypath.inputs.expasy.expasy_enzymes", "api/pypath.inputs.genecards", "api/pypath.inputs.genecards.genecards_datasheet", "api/pypath.inputs.genecards.genecards_soup", "api/pypath.inputs.genecards.genecards_summaries", "api/pypath.inputs.get_method", "api/pypath.inputs.go", "api/pypath.inputs.go.get_go_desc", "api/pypath.inputs.go.get_go_quick", "api/pypath.inputs.go.get_goslim", "api/pypath.inputs.go.go_ancestors", "api/pypath.inputs.go.go_ancestors_goose", "api/pypath.inputs.go.go_ancestors_quickgo", "api/pypath.inputs.go.go_annotations", "api/pypath.inputs.go.go_annotations_all", "api/pypath.inputs.go.go_annotations_goa", "api/pypath.inputs.go.go_annotations_goose", "api/pypath.inputs.go.go_annotations_quickgo", "api/pypath.inputs.go.go_annotations_solr", "api/pypath.inputs.go.go_annotations_uniprot", "api/pypath.inputs.go.go_descendants", "api/pypath.inputs.go.go_descendants_goose", "api/pypath.inputs.go.go_descendants_quickgo", "api/pypath.inputs.go.go_descendants_to_ancestors", "api/pypath.inputs.go.go_terms", "api/pypath.inputs.go.go_terms_goose", "api/pypath.inputs.go.go_terms_quickgo", "api/pypath.inputs.go.go_terms_solr", "api/pypath.inputs.gpcrdb", "api/pypath.inputs.gpcrdb.gpcrdb_annotations", "api/pypath.inputs.graphviz", "api/pypath.inputs.graphviz.graphviz_attrs", "api/pypath.inputs.guide2pharma", "api/pypath.inputs.guide2pharma.guide2pharma_complexes", "api/pypath.inputs.guide2pharma.guide2pharma_download", "api/pypath.inputs.guide2pharma.guide2pharma_interactions", "api/pypath.inputs.gutmgene", "api/pypath.inputs.gutmgene.GutmgeneAnnotation", "api/pypath.inputs.gutmgene.GutmgeneRaw", "api/pypath.inputs.gutmgene.gutmgene_annotations", "api/pypath.inputs.gutmgene.gutmgene_raw", "api/pypath.inputs.havugimana", "api/pypath.inputs.havugimana.get_havugimana", "api/pypath.inputs.havugimana.havugimana_complexes", "api/pypath.inputs.hgnc", "api/pypath.inputs.hgnc.hgnc_genegroups", "api/pypath.inputs.hippie", "api/pypath.inputs.hippie.hippie_interactions", "api/pypath.inputs.hmdb", "api/pypath.inputs.hmdb.common", "api/pypath.inputs.hmdb.common.iter", "api/pypath.inputs.hmdb.common.mapping", "api/pypath.inputs.hmdb.common.raw", "api/pypath.inputs.hmdb.common.table", "api/pypath.inputs.hmdb.metabolites", "api/pypath.inputs.hmdb.metabolites.iter", "api/pypath.inputs.hmdb.metabolites.mapping", "api/pypath.inputs.hmdb.metabolites.raw", "api/pypath.inputs.hmdb.metabolites.table", "api/pypath.inputs.hmdb.proteins", "api/pypath.inputs.hmdb.proteins.iter", "api/pypath.inputs.hmdb.proteins.mapping", "api/pypath.inputs.hmdb.proteins.raw", "api/pypath.inputs.hmdb.proteins.table", "api/pypath.inputs.hmdb.schema", "api/pypath.inputs.hmdb.schema.common", "api/pypath.inputs.hmdb.schema.common.Field", "api/pypath.inputs.hmdb.schema.metabolites", "api/pypath.inputs.hmdb.schema.proteins", "api/pypath.inputs.hmdb.structures", "api/pypath.inputs.hmdb.structures.sdf", "api/pypath.inputs.hmdb.visual", "api/pypath.inputs.hmdb.visual.show_structure", "api/pypath.inputs.hmdb.visual.structure_svg", "api/pypath.inputs.hmdb.xml", "api/pypath.inputs.hmdb.xml.hmdb_xml", "api/pypath.inputs.homologene", "api/pypath.inputs.homologene.get_homologene", "api/pypath.inputs.homologene.homologene_dict", "api/pypath.inputs.homologene.homologene_uniprot_dict", "api/pypath.inputs.hpmr", "api/pypath.inputs.hpmr.HpmrInteraction", "api/pypath.inputs.hpmr.get_hpmr", "api/pypath.inputs.hpmr.hpmr_annotations", "api/pypath.inputs.hpmr.hpmr_complexes", "api/pypath.inputs.hpmr.hpmr_interactions", "api/pypath.inputs.hpo", "api/pypath.inputs.hpo.hpo_annotations", "api/pypath.inputs.hpo.hpo_diseases", "api/pypath.inputs.hpo.hpo_ontology", "api/pypath.inputs.hpo.hpo_terms", "api/pypath.inputs.hprd", "api/pypath.inputs.hprd.get_hprd", "api/pypath.inputs.hprd.hprd_enzyme_substrate", "api/pypath.inputs.hprd.hprd_interactions", "api/pypath.inputs.hprd.hprd_interactions_htp", "api/pypath.inputs.htri", "api/pypath.inputs.htri.htri_interactions", "api/pypath.inputs.humancellmap", "api/pypath.inputs.humancellmap.humancellmap_annotations", "api/pypath.inputs.humap", "api/pypath.inputs.humap.humap2_complexes", "api/pypath.inputs.humap.humap_complexes", "api/pypath.inputs.humsavar", "api/pypath.inputs.humsavar.uniprot_variants", "api/pypath.inputs.huri", "api/pypath.inputs.huri.hi_i_interactions", "api/pypath.inputs.huri.hi_ii_interactions", "api/pypath.inputs.huri.hi_iii_old", "api/pypath.inputs.huri.hi_union_interactions", "api/pypath.inputs.huri.huri_interactions", "api/pypath.inputs.huri.lit_bm_13_interactions", "api/pypath.inputs.huri.lit_bm_17_interactions", "api/pypath.inputs.huri.lit_bm_interactions", "api/pypath.inputs.huri.rolland_hi_ii_14", "api/pypath.inputs.huri.vidal_hi_iii_old", "api/pypath.inputs.huri.yang2016_interactions", "api/pypath.inputs.huri.yu2011_interactions", "api/pypath.inputs.i3d", "api/pypath.inputs.i3d.get_i3d", "api/pypath.inputs.icellnet", "api/pypath.inputs.icellnet.IcellnetRecord", "api/pypath.inputs.icellnet.icellnet_annotations", "api/pypath.inputs.icellnet.icellnet_complexes", "api/pypath.inputs.icellnet.icellnet_interactions", "api/pypath.inputs.ielm", "api/pypath.inputs.ielm.get_ielm", "api/pypath.inputs.ielm.get_ielm_huge", "api/pypath.inputs.imweb", "api/pypath.inputs.imweb.get_imweb", "api/pypath.inputs.imweb.get_imweb_req", "api/pypath.inputs.innatedb", "api/pypath.inputs.innatedb.innatedb_interactions", "api/pypath.inputs.instruct", "api/pypath.inputs.instruct.get_instruct", "api/pypath.inputs.instruct.get_instruct_offsets", "api/pypath.inputs.intact", "api/pypath.inputs.intact.intact_interactions", "api/pypath.inputs.integrins", "api/pypath.inputs.integrins.get_integrins", "api/pypath.inputs.interpro", "api/pypath.inputs.interpro.interpro2go_annotations", "api/pypath.inputs.interpro.interpro_annotations", "api/pypath.inputs.interpro.interpro_entries", "api/pypath.inputs.interpro.interpro_xrefs", "api/pypath.inputs.intogen", "api/pypath.inputs.intogen.intogen_annotations", "api/pypath.inputs.ipi", "api/pypath.inputs.ipi.ipi_uniprot", "api/pypath.inputs.iptmnet", "api/pypath.inputs.iptmnet.IptmnetInteraction", "api/pypath.inputs.iptmnet.iptmnet_interactions", "api/pypath.inputs.italk", "api/pypath.inputs.italk.italk_annotations", "api/pypath.inputs.italk.italk_interactions", "api/pypath.inputs.italk.italk_raw", "api/pypath.inputs.kea", "api/pypath.inputs.kea.kea_enzyme_substrate", "api/pypath.inputs.kea.kea_interactions", "api/pypath.inputs.kegg", "api/pypath.inputs.kegg.KeggPathway", "api/pypath.inputs.kegg.kegg_dbget", "api/pypath.inputs.kegg.kegg_interactions", "api/pypath.inputs.kegg.kegg_medicus", "api/pypath.inputs.kegg.kegg_medicus_complexes", "api/pypath.inputs.kegg.kegg_medicus_interactions", "api/pypath.inputs.kegg.kegg_pathway_annotations", "api/pypath.inputs.kegg.kegg_pathway_annotations_pathwaycommons", "api/pypath.inputs.kegg.kegg_pathways", "api/pypath.inputs.kegg_api", "api/pypath.inputs.kegg_api.disease_to_drug", "api/pypath.inputs.kegg_api.disease_to_gene", "api/pypath.inputs.kegg_api.disease_to_pathway", "api/pypath.inputs.kegg_api.drug_to_disease", "api/pypath.inputs.kegg_api.drug_to_drug", "api/pypath.inputs.kegg_api.drug_to_gene", "api/pypath.inputs.kegg_api.drug_to_pathway", "api/pypath.inputs.kegg_api.gene_to_disease", "api/pypath.inputs.kegg_api.gene_to_drug", "api/pypath.inputs.kegg_api.gene_to_pathway", "api/pypath.inputs.kegg_api.kegg_drug_to_chebi", "api/pypath.inputs.kegg_api.kegg_gene_to_ncbi_geneid", "api/pypath.inputs.kegg_api.kegg_gene_to_uniprot", "api/pypath.inputs.kegg_api.pathway_to_disease", "api/pypath.inputs.kegg_api.pathway_to_drug", "api/pypath.inputs.kegg_api.pathway_to_gene", "api/pypath.inputs.kinasedotcom", "api/pypath.inputs.kinasedotcom.kinasedotcom_annotations", "api/pypath.inputs.kirouac2010", "api/pypath.inputs.kirouac2010.kirouac2010_interactions", "api/pypath.inputs.lambert2018", "api/pypath.inputs.lambert2018.lambert2018_annotations", "api/pypath.inputs.lambert2018.lambert2018_s1_raw", "api/pypath.inputs.laudanna", "api/pypath.inputs.laudanna.laudanna_directions", "api/pypath.inputs.laudanna.laudanna_effects", "api/pypath.inputs.li2012", "api/pypath.inputs.li2012.get_li2012", "api/pypath.inputs.li2012.li2012_dmi", "api/pypath.inputs.li2012.li2012_enzyme_substrate", "api/pypath.inputs.li2012.li2012_interactions", "api/pypath.inputs.lincs", "api/pypath.inputs.lincs.lincs_compounds", "api/pypath.inputs.lmpid", "api/pypath.inputs.lmpid.lmpid_dmi", "api/pypath.inputs.lmpid.lmpid_interactions", "api/pypath.inputs.lmpid.load_lmpid", "api/pypath.inputs.lncdisease", "api/pypath.inputs.lncdisease.lncdisease_interactions", "api/pypath.inputs.lncrnadb", "api/pypath.inputs.lncrnadb.lncrnadb_interactions", "api/pypath.inputs.locate", "api/pypath.inputs.locate.locate_localizations", "api/pypath.inputs.lrdb", "api/pypath.inputs.lrdb.LrdbAnnotation", "api/pypath.inputs.lrdb.lrdb_annotations", "api/pypath.inputs.lrdb.lrdb_interactions", "api/pypath.inputs.macrophage", "api/pypath.inputs.macrophage.macrophage_interactions", "api/pypath.inputs.main", "api/pypath.inputs.matrisome", "api/pypath.inputs.matrisome.matrisome_annotations", "api/pypath.inputs.matrixdb", "api/pypath.inputs.matrixdb.matrixdb_annotations", "api/pypath.inputs.matrixdb.matrixdb_ecm_proteins", "api/pypath.inputs.matrixdb.matrixdb_interactions", "api/pypath.inputs.matrixdb.matrixdb_membrane_proteins", "api/pypath.inputs.matrixdb.matrixdb_secreted_proteins", "api/pypath.inputs.mcam", "api/pypath.inputs.mcam.mcam_cell_adhesion_molecules", "api/pypath.inputs.membranome", "api/pypath.inputs.membranome.membranome_annotations", "api/pypath.inputs.mimp", "api/pypath.inputs.mimp.get_kinase_class", "api/pypath.inputs.mimp.mimp_enzyme_substrate", "api/pypath.inputs.mimp.mimp_interactions", "api/pypath.inputs.mir2disease", "api/pypath.inputs.mir2disease.mir2disease_interactions", "api/pypath.inputs.mirbase", "api/pypath.inputs.mirbase.get_mirbase_aliases", "api/pypath.inputs.mirbase.mirbase_ids", "api/pypath.inputs.mirbase.mirbase_mature", "api/pypath.inputs.mirbase.mirbase_mature_all", "api/pypath.inputs.mirbase.mirbase_precursor", "api/pypath.inputs.mirbase.mirbase_precursor_all", "api/pypath.inputs.mirbase.mirbase_precursor_to_mature", "api/pypath.inputs.mirdeathdb", "api/pypath.inputs.mirdeathdb.mirdeathdb_interactions", "api/pypath.inputs.mirecords", "api/pypath.inputs.mirecords.mirecords_interactions", "api/pypath.inputs.mirtarbase", "api/pypath.inputs.mirtarbase.mirtarbase_interactions", "api/pypath.inputs.mitab", "api/pypath.inputs.mitab.mitab_field_list", "api/pypath.inputs.mitab.mitab_field_uniprot", "api/pypath.inputs.mppi", "api/pypath.inputs.mppi.mppi_interactions", "api/pypath.inputs.msigdb", "api/pypath.inputs.msigdb.msigdb_annotations", "api/pypath.inputs.msigdb.msigdb_download", "api/pypath.inputs.msigdb.msigdb_download_collections", "api/pypath.inputs.ncrdeathdb", "api/pypath.inputs.ncrdeathdb.ncrdeathdb_interactions", "api/pypath.inputs.negatome", "api/pypath.inputs.negatome.negatome_interactions", "api/pypath.inputs.netbiol", "api/pypath.inputs.netbiol.arn_interactions", "api/pypath.inputs.netbiol.nrf2ome_interactions", "api/pypath.inputs.netpath", "api/pypath.inputs.netpath.netpath_interactions", "api/pypath.inputs.netpath.netpath_names", "api/pypath.inputs.netpath.netpath_pathway_annotations", "api/pypath.inputs.offsides", "api/pypath.inputs.offsides.offsides_side_effects", "api/pypath.inputs.oma", "api/pypath.inputs.oma.oma_orthologs", "api/pypath.inputs.oma.oma_table", "api/pypath.inputs.ontology", "api/pypath.inputs.ontology.listof_ontologies", "api/pypath.inputs.ontology.ontology", "api/pypath.inputs.opentargets", "api/pypath.inputs.opentargets.opentargets_adverse_reactions", "api/pypath.inputs.opentargets.opentargets_baseline_expression", "api/pypath.inputs.opentargets.opentargets_direct_score", "api/pypath.inputs.opentargets.opentargets_general", "api/pypath.inputs.opentargets.opentargets_indirect_score", "api/pypath.inputs.opm", "api/pypath.inputs.opm.opm_annotations", "api/pypath.inputs.oreganno", "api/pypath.inputs.oreganno.oreganno_interactions", "api/pypath.inputs.oreganno.oreganno_raw", "api/pypath.inputs.panglaodb", "api/pypath.inputs.panglaodb.panglaodb_annotations", "api/pypath.inputs.panglaodb.panglaodb_raw", "api/pypath.inputs.pathophenodb", "api/pypath.inputs.pathophenodb.DiseasePathogen", "api/pypath.inputs.pathophenodb.disease_pathogen_interactions", "api/pypath.inputs.pathwaycommons", "api/pypath.inputs.pathwaycommons.PathwayCommonsInteraction", "api/pypath.inputs.pathwaycommons.PathwayCommonsResource", "api/pypath.inputs.pathwaycommons.pathwaycommons_bind_interactions", "api/pypath.inputs.pathwaycommons.pathwaycommons_biogrid_interactions", "api/pypath.inputs.pathwaycommons.pathwaycommons_corum_interactions", "api/pypath.inputs.pathwaycommons.pathwaycommons_dip_interactions", "api/pypath.inputs.pathwaycommons.pathwaycommons_hprd_interactions", "api/pypath.inputs.pathwaycommons.pathwaycommons_inoh_interactions", "api/pypath.inputs.pathwaycommons.pathwaycommons_intact_interactions", "api/pypath.inputs.pathwaycommons.pathwaycommons_interactions", "api/pypath.inputs.pathwaycommons.pathwaycommons_kegg_interactions", "api/pypath.inputs.pathwaycommons.pathwaycommons_netpath_interactions", "api/pypath.inputs.pathwaycommons.pathwaycommons_panther_interactions", "api/pypath.inputs.pathwaycommons.pathwaycommons_phosphosite_interactions", "api/pypath.inputs.pathwaycommons.pathwaycommons_reactome_interactions", "api/pypath.inputs.pathwaycommons.pathwaycommons_wikipathways_interactions", "api/pypath.inputs.pazar", "api/pypath.inputs.pazar.pazar_interactions", "api/pypath.inputs.pdb", "api/pypath.inputs.pdb.pdb_chains", "api/pypath.inputs.pdb.pdb_complexes", "api/pypath.inputs.pdb.pdb_uniprot", "api/pypath.inputs.pdzbase", "api/pypath.inputs.pdzbase.pdzbase_interactions", "api/pypath.inputs.pepcyber", "api/pypath.inputs.pepcyber.pepcyber_details", "api/pypath.inputs.pepcyber.pepcyber_interactions", "api/pypath.inputs.pfam", "api/pypath.inputs.pfam.pfam_names", "api/pypath.inputs.pfam.pfam_pdb", "api/pypath.inputs.pfam.pfam_regions", "api/pypath.inputs.pfam.pfam_uniprot", "api/pypath.inputs.pharos", "api/pypath.inputs.pharos.pharos_diseases", "api/pypath.inputs.pharos.pharos_expression", "api/pypath.inputs.pharos.pharos_general", "api/pypath.inputs.pharos.pharos_gtex", "api/pypath.inputs.pharos.pharos_ligands", "api/pypath.inputs.pharos.pharos_orthologs", "api/pypath.inputs.pharos.pharos_targets", "api/pypath.inputs.pharos.pharos_xrefs", "api/pypath.inputs.phobius", "api/pypath.inputs.phobius.phobius_annotations", "api/pypath.inputs.phosphatome", "api/pypath.inputs.phosphatome.phosphatome_annotations", "api/pypath.inputs.phosphoelm", "api/pypath.inputs.phosphoelm.phosphoelm_enzyme_substrate", "api/pypath.inputs.phosphoelm.phosphoelm_interactions", "api/pypath.inputs.phosphoelm.phosphoelm_kinases", "api/pypath.inputs.phosphonetworks", "api/pypath.inputs.phosphonetworks.phosphonetworks_enzyme_substrate", "api/pypath.inputs.phosphonetworks.phosphonetworks_interactions", "api/pypath.inputs.phosphopoint", "api/pypath.inputs.phosphopoint.phosphopoint_directions", "api/pypath.inputs.phosphopoint.phosphopoint_interactions", "api/pypath.inputs.phosphosite", "api/pypath.inputs.phosphosite.phosphosite_directions", "api/pypath.inputs.phosphosite.phosphosite_enzyme_substrate", "api/pypath.inputs.phosphosite.phosphosite_interactions", "api/pypath.inputs.phosphosite.phosphosite_interactions_all", "api/pypath.inputs.phosphosite.phosphosite_interactions_curated", "api/pypath.inputs.phosphosite.phosphosite_interactions_new", "api/pypath.inputs.phosphosite.phosphosite_interactions_noref", "api/pypath.inputs.phosphosite.phosphosite_ptm_orthology", "api/pypath.inputs.phosphosite.phosphosite_ptms", "api/pypath.inputs.phosphosite.phosphosite_regsites", "api/pypath.inputs.phosphosite.phosphosite_regsites_one_organism", "api/pypath.inputs.phosphosite.regsites_tab", "api/pypath.inputs.pisa", "api/pypath.inputs.pisa.PisaBond", "api/pypath.inputs.pisa.pisa_bonds", "api/pypath.inputs.pisa.pisa_interfaces", "api/pypath.inputs.pro", "api/pypath.inputs.pro.get_pro", "api/pypath.inputs.pro.pro_mapping", "api/pypath.inputs.progeny", "api/pypath.inputs.progeny.progeny_annotations", "api/pypath.inputs.progeny.progeny_raw", "api/pypath.inputs.proteinatlas", "api/pypath.inputs.proteinatlas.get_proteinatlas", "api/pypath.inputs.proteinatlas.proteinatlas_annotations", "api/pypath.inputs.proteinatlas.proteinatlas_secretome_annotations", "api/pypath.inputs.proteinatlas.proteinatlas_subcellular_annotations", "api/pypath.inputs.proteins", "api/pypath.inputs.proteins.variants", "api/pypath.inputs.protmapper", "api/pypath.inputs.protmapper.get_protmapper", "api/pypath.inputs.protmapper.protmapper_enzyme_substrate", "api/pypath.inputs.protmapper.protmapper_interactions", "api/pypath.inputs.pubchem", "api/pypath.inputs.pubchem.pubchem_mapping", "api/pypath.inputs.pubmed", "api/pypath.inputs.pubmed.get_pmid", "api/pypath.inputs.pubmed.get_pubmeds", "api/pypath.inputs.pubmed.only_pmids", "api/pypath.inputs.pubmed.open_pubmed", "api/pypath.inputs.pubmed.pmids_dict", "api/pypath.inputs.pubmed.pmids_list", "api/pypath.inputs.ramilowski2015", "api/pypath.inputs.ramilowski2015.ramilowski_interactions", "api/pypath.inputs.ramilowski2015.ramilowski_locations", "api/pypath.inputs.ramp", "api/pypath.inputs.ramp.ramp_id_types", "api/pypath.inputs.ramp.ramp_id_types_2", "api/pypath.inputs.ramp.ramp_list_tables", "api/pypath.inputs.ramp.ramp_mapping", "api/pypath.inputs.ramp.ramp_raw", "api/pypath.inputs.ramp.ramp_show_tables", "api/pypath.inputs.rdata", "api/pypath.inputs.reaction", "api/pypath.inputs.reaction.acsn_biopax", "api/pypath.inputs.reaction.acsn_interactions_2", "api/pypath.inputs.reaction.get_acsn_effects", "api/pypath.inputs.reaction.get_controls", "api/pypath.inputs.reaction.get_interactions", "api/pypath.inputs.reaction.get_reactions", "api/pypath.inputs.reaction.get_soup", "api/pypath.inputs.reaction.panther_biopax", "api/pypath.inputs.reaction.panther_interactions", "api/pypath.inputs.reaction.pid_biopax", "api/pypath.inputs.reaction.pid_interactions", "api/pypath.inputs.reaction.process_complex", "api/pypath.inputs.reaction.process_controls", "api/pypath.inputs.reaction.process_reactions", "api/pypath.inputs.reaction.reactions_biopax", "api/pypath.inputs.reaction.reactome_biopax", "api/pypath.inputs.reaction.reactome_bs", "api/pypath.inputs.reaction.reactome_interactions", "api/pypath.inputs.reaction.reactome_sbml", "api/pypath.inputs.reactome", "api/pypath.inputs.reactome.reactome_chebis", "api/pypath.inputs.reactome.reactome_pathway_relations", "api/pypath.inputs.reactome.reactome_pathways", "api/pypath.inputs.reactome.reactome_uniprots", "api/pypath.inputs.scconnect", "api/pypath.inputs.scconnect.scconnect_annotations", "api/pypath.inputs.scconnect.scconnect_complexes", "api/pypath.inputs.scconnect.scconnect_interactions", "api/pypath.inputs.science", "api/pypath.inputs.science.science_download", "api/pypath.inputs.sider", "api/pypath.inputs.sider.SiderDrug", "api/pypath.inputs.sider.SiderSideeffect", "api/pypath.inputs.sider.SiderSideeffectMeddra", "api/pypath.inputs.sider.SiderSideeffetFrequency", "api/pypath.inputs.sider.sider_drug_names", "api/pypath.inputs.sider.sider_meddra_side_effects", "api/pypath.inputs.sider.sider_side_effect_frequencies", "api/pypath.inputs.sider.sider_side_effects", "api/pypath.inputs.signalink", "api/pypath.inputs.signalink.signalink_annotations", "api/pypath.inputs.signalink.signalink_function_annotations", "api/pypath.inputs.signalink.signalink_interactions", "api/pypath.inputs.signalink.signalink_pathway_annotations", "api/pypath.inputs.signor", "api/pypath.inputs.signor.signor_complexes", "api/pypath.inputs.signor.signor_enzyme_substrate", "api/pypath.inputs.signor.signor_interactions", "api/pypath.inputs.signor.signor_pathway_annotations", "api/pypath.inputs.signor.signor_pathways", "api/pypath.inputs.signor.signor_protein_families", "api/pypath.inputs.spike", "api/pypath.inputs.spike.spike_complexes", "api/pypath.inputs.spike.spike_interactions", "api/pypath.inputs.stitch", "api/pypath.inputs.stitch.stitch_actions_interactions", "api/pypath.inputs.stitch.stitch_links_interactions", "api/pypath.inputs.string", "api/pypath.inputs.string.string_effects", "api/pypath.inputs.string.string_links_interactions", "api/pypath.inputs.string.string_physical_interactions", "api/pypath.inputs.string.string_species", "api/pypath.inputs.surfaceome", "api/pypath.inputs.surfaceome.surfaceome_annotations", "api/pypath.inputs.switches_elm", "api/pypath.inputs.switches_elm.get_switches_elm", "api/pypath.inputs.talklr", "api/pypath.inputs.talklr.talklr_annotations", "api/pypath.inputs.talklr.talklr_interactions", "api/pypath.inputs.talklr.talklr_raw", "api/pypath.inputs.tcdb", "api/pypath.inputs.tcdb.tcdb_annotations", "api/pypath.inputs.tcdb.tcdb_classes", "api/pypath.inputs.tcdb.tcdb_families", "api/pypath.inputs.tfcensus", "api/pypath.inputs.tfcensus.tfcensus_annotations", "api/pypath.inputs.threedcomplex", "api/pypath.inputs.threedcomplex.threedcomplex_chains", "api/pypath.inputs.threedcomplex.threedcomplex_complexes", "api/pypath.inputs.threedcomplex.threedcomplex_contacts", "api/pypath.inputs.threedcomplex.threedcomplex_ddi", "api/pypath.inputs.threedcomplex.threedcomplex_nresidues", "api/pypath.inputs.threedid", "api/pypath.inputs.threedid.get_3did", "api/pypath.inputs.threedid.get_3did_ddi", "api/pypath.inputs.threedid.get_3did_dmi", "api/pypath.inputs.threedid.process_3did_dmi", "api/pypath.inputs.topdb", "api/pypath.inputs.topdb.topdb_annotations", "api/pypath.inputs.transmir", "api/pypath.inputs.transmir.transmir_interactions", "api/pypath.inputs.trip", "api/pypath.inputs.trip.take_a_trip", "api/pypath.inputs.trip.trip_find_uniprot", "api/pypath.inputs.trip.trip_get_uniprot", "api/pypath.inputs.trip.trip_interactions", "api/pypath.inputs.trip.trip_process", "api/pypath.inputs.trip.trip_process_table", "api/pypath.inputs.trrust", "api/pypath.inputs.trrust.trrust_human", "api/pypath.inputs.trrust.trrust_interactions", "api/pypath.inputs.trrust.trrust_mouse", "api/pypath.inputs.twosides", "api/pypath.inputs.twosides.twosides_interactions", "api/pypath.inputs.unichem", "api/pypath.inputs.unichem.info", "api/pypath.inputs.unichem.unichem_info", "api/pypath.inputs.unichem.unichem_mapping", "api/pypath.inputs.unichem.unichem_sources", "api/pypath.inputs.uniprot", "api/pypath.inputs.uniprot.Taxon", "api/pypath.inputs.uniprot.UniprotQuery", "api/pypath.inputs.uniprot.UniprotRecordHistory", "api/pypath.inputs.uniprot.deleted_uniprot_genesymbol", "api/pypath.inputs.uniprot.get_uniprot_sec", "api/pypath.inputs.uniprot.idmapping_idtypes", "api/pypath.inputs.uniprot.protein_datasheet", "api/pypath.inputs.uniprot.query_builder", "api/pypath.inputs.uniprot.swissprot_deleted", "api/pypath.inputs.uniprot.trembl_deleted", "api/pypath.inputs.uniprot.uniprot_data", "api/pypath.inputs.uniprot.uniprot_deleted", "api/pypath.inputs.uniprot.uniprot_families", "api/pypath.inputs.uniprot.uniprot_history", "api/pypath.inputs.uniprot.uniprot_history_recent_datasheet", "api/pypath.inputs.uniprot.uniprot_keywords", "api/pypath.inputs.uniprot.uniprot_locations", "api/pypath.inputs.uniprot.uniprot_ncbi_taxids", "api/pypath.inputs.uniprot.uniprot_ncbi_taxids_2", "api/pypath.inputs.uniprot.uniprot_preprocess", "api/pypath.inputs.uniprot.uniprot_query", "api/pypath.inputs.uniprot.uniprot_recent_version", "api/pypath.inputs.uniprot.uniprot_taxonomy", "api/pypath.inputs.uniprot.uniprot_tissues", "api/pypath.inputs.uniprot.uniprot_topology", "api/pypath.inputs.uniprot.valid_uniprot", "api/pypath.inputs.uniprot_db", "api/pypath.inputs.uniprot_db.all_swissprots", "api/pypath.inputs.uniprot_db.all_trembls", "api/pypath.inputs.uniprot_db.all_uniprots", "api/pypath.inputs.uniprot_db.get_db", "api/pypath.inputs.uniprot_db.init_db", "api/pypath.inputs.uniprot_db.is_swissprot", "api/pypath.inputs.uniprot_db.is_trembl", "api/pypath.inputs.uniprot_db.is_uniprot", "api/pypath.inputs.wang", "api/pypath.inputs.wang.cui_interactions", "api/pypath.inputs.wang.hsn_interactions", "api/pypath.inputs.wang.wang_annotations", "api/pypath.inputs.wang.wang_interactions", "api/pypath.inputs.wojtowicz2020", "api/pypath.inputs.wojtowicz2020.wojtowicz2020_interactions", "api/pypath.inputs.wojtowicz2020.wojtowicz2020_raw", "api/pypath.inputs.zhong2015", "api/pypath.inputs.zhong2015.zhong2015_annotations", "api/pypath.internals", "api/pypath.internals.annot_formats", "api/pypath.internals.annot_formats.AnnotDef", "api/pypath.internals.annot_formats.AnnotDefKey", "api/pypath.internals.annot_formats.AnnotOp", "api/pypath.internals.annot_formats.AnnotationGroup", "api/pypath.internals.input_formats", "api/pypath.internals.input_formats.ArrayMapping", "api/pypath.internals.input_formats.BiomartMapping", "api/pypath.internals.input_formats.FileMapping", "api/pypath.internals.input_formats.HmdbMapping", "api/pypath.internals.input_formats.MappingInput", "api/pypath.internals.input_formats.NetworkInput", "api/pypath.internals.input_formats.PickleMapping", "api/pypath.internals.input_formats.ProMapping", "api/pypath.internals.input_formats.RampMapping", "api/pypath.internals.input_formats.ReadList", "api/pypath.internals.input_formats.UnichemMapping", "api/pypath.internals.input_formats.UniprotListMapping", "api/pypath.internals.input_formats.UniprotMapping", "api/pypath.internals.intera", "api/pypath.internals.intera.Complex", "api/pypath.internals.intera.Domain", "api/pypath.internals.intera.DomainDomain", "api/pypath.internals.intera.DomainMotif", "api/pypath.internals.intera.Interface", "api/pypath.internals.intera.Motif", "api/pypath.internals.intera.Ptm", "api/pypath.internals.intera.Regulation", "api/pypath.internals.intera.Residue", "api/pypath.internals.license", "api/pypath.internals.license.License", "api/pypath.internals.license.LicenseAttrib", "api/pypath.internals.license.LicenseFeature", "api/pypath.internals.license.LicensePurpose", "api/pypath.internals.license.LicenseSharing", "api/pypath.internals.maps", "api/pypath.internals.refs", "api/pypath.internals.refs.Reference", "api/pypath.internals.refs.get_pubmed_data", "api/pypath.internals.resource", "api/pypath.internals.resource.AbstractResource", "api/pypath.internals.resource.EnzymeSubstrateResource", "api/pypath.internals.resource.EnzymeSubstrateResourceKey", "api/pypath.internals.resource.NetworkDataset", "api/pypath.internals.resource.NetworkResource", "api/pypath.internals.resource.NetworkResourceKey", "api/pypath.internals.resource.ResourceAttributes", "api/pypath.legacy", "api/pypath.legacy.db_categories", "api/pypath.legacy.db_categories.get_categories", "api/pypath.legacy.db_categories.get_category", "api/pypath.log", "api/pypath.resources", "api/pypath.resources.controller", "api/pypath.resources.controller.ResourceController", "api/pypath.resources.data", "api/pypath.resources.data_formats", "api/pypath.resources.data_formats.activity_flow", "api/pypath.resources.data_formats.enzyme_substrate", "api/pypath.resources.data_formats.interaction", "api/pypath.resources.data_formats.interaction_htp", "api/pypath.resources.data_formats.pathway_bad", "api/pypath.resources.data_formats.reaction_pc", "api/pypath.resources.data_formats.transcription_deprecated", "api/pypath.resources.data_formats.transcription_onebyone", "api/pypath.resources.get_controller", "api/pypath.resources.licenses", "api/pypath.resources.licenses.Licenses", "api/pypath.resources.network", "api/pypath.resources.network.choose_dataset", "api/pypath.resources.network.dataset_priority", "api/pypath.resources.network.dorothea_expand_levels", "api/pypath.resources.urls", "api/pypath.share", "api/pypath.share.cache", "api/pypath.share.cache.cache_item", "api/pypath.share.cache.cache_path", "api/pypath.share.cache.default_cachedir", "api/pypath.share.cache.get_cachedir", "api/pypath.share.common", "api/pypath.share.constants", "api/pypath.share.curl", "api/pypath.share.curl.Curl", "api/pypath.share.curl.FileOpener", "api/pypath.share.curl.RemoteFile", "api/pypath.share.curl.cache_delete_off", "api/pypath.share.curl.cache_delete_on", "api/pypath.share.curl.cache_off", "api/pypath.share.curl.cache_on", "api/pypath.share.curl.cache_print_off", "api/pypath.share.curl.cache_print_on", "api/pypath.share.curl.debug_off", "api/pypath.share.curl.debug_on", "api/pypath.share.curl.dryrun_off", "api/pypath.share.curl.dryrun_on", "api/pypath.share.curl.is_url", "api/pypath.share.curl.preserve_off", "api/pypath.share.curl.preserve_on", "api/pypath.share.progress", "api/pypath.share.progress.Progress", "api/pypath.share.session", "api/pypath.share.settings", "api/pypath.utils", "api/pypath.utils.go", "api/pypath.utils.go.GOAnnotation", "api/pypath.utils.go.GOCustomAnnotation", "api/pypath.utils.go.GeneOntology", "api/pypath.utils.go.annotate", "api/pypath.utils.go.get_db", "api/pypath.utils.go.init_db", "api/pypath.utils.go.load_go", "api/pypath.utils.mapping", "api/pypath.utils.mapping.MapReader", "api/pypath.utils.mapping.Mapper", "api/pypath.utils.mapping.MappingTable", "api/pypath.utils.mapping.MappingTableKey", "api/pypath.utils.mapping.UNIPROT_ID_TYPES", "api/pypath.utils.mapping.get_mapper", "api/pypath.utils.mapping.guess_type", "api/pypath.utils.mapping.id_from_label", "api/pypath.utils.mapping.id_from_label0", "api/pypath.utils.mapping.id_types", "api/pypath.utils.mapping.init", "api/pypath.utils.mapping.label", "api/pypath.utils.mapping.map_name", "api/pypath.utils.mapping.map_name0", "api/pypath.utils.mapping.map_names", "api/pypath.utils.mapping.mapping_tables", "api/pypath.utils.mapping.translation_df", "api/pypath.utils.mapping.translation_dict", "api/pypath.utils.metabo", "api/pypath.utils.orthology", "api/pypath.utils.orthology.EnsemblOrtholog", "api/pypath.utils.orthology.EnsemblOrthology", "api/pypath.utils.orthology.HomologeneOrtholog", "api/pypath.utils.orthology.HomologeneOrthology", "api/pypath.utils.orthology.OmaOrtholog", "api/pypath.utils.orthology.OmaOrthology", "api/pypath.utils.orthology.OrthologBase", "api/pypath.utils.orthology.OrthologMeta", "api/pypath.utils.orthology.OrthologyManager", "api/pypath.utils.orthology.OrthologyTableKey", "api/pypath.utils.orthology.ProteinOrthology", "api/pypath.utils.orthology.Proteomes", "api/pypath.utils.orthology.PtmOrthology", "api/pypath.utils.orthology.SequenceContainer", "api/pypath.utils.orthology.get_df", "api/pypath.utils.orthology.get_dict", "api/pypath.utils.orthology.get_manager", "api/pypath.utils.orthology.init", "api/pypath.utils.orthology.translate", "api/pypath.utils.orthology.translate_df", "api/pypath.utils.pdb", "api/pypath.utils.pdb.Residue", "api/pypath.utils.pdb.ResidueMapper", "api/pypath.utils.pdb.Segment", "api/pypath.utils.pdb.residue_pdb", "api/pypath.utils.proteomicsdb", "api/pypath.utils.proteomicsdb.ProteomicsDB", "api/pypath.utils.pyreact", "api/pypath.utils.pyreact.AttributeHandler", "api/pypath.utils.pyreact.BioPaxReader", "api/pypath.utils.pyreact.Complex", "api/pypath.utils.pyreact.ComplexVariations", "api/pypath.utils.pyreact.Control", "api/pypath.utils.pyreact.Entity", "api/pypath.utils.pyreact.EntitySet", "api/pypath.utils.pyreact.Intersecting", "api/pypath.utils.pyreact.Protein", "api/pypath.utils.pyreact.ProteinFamily", "api/pypath.utils.pyreact.PyReact", "api/pypath.utils.pyreact.Reaction", "api/pypath.utils.pyreact.ReactionSide", "api/pypath.utils.pyreact.Reference", "api/pypath.utils.reflists", "api/pypath.utils.reflists.ReferenceListManager", "api/pypath.utils.reflists.check", "api/pypath.utils.reflists.get_manager", "api/pypath.utils.reflists.get_reflist", "api/pypath.utils.reflists.init", "api/pypath.utils.reflists.is_not", "api/pypath.utils.reflists.select", "api/pypath.utils.residues", "api/pypath.utils.residues.ResidueMapper", "api/pypath.utils.seq", "api/pypath.utils.seq.Pfam", "api/pypath.utils.seq.Resource", "api/pypath.utils.seq.Seq", "api/pypath.utils.seq.get_isoforms", "api/pypath.utils.seq.read_fasta", "api/pypath.utils.seq.swissprot_seq", "api/pypath.utils.taxonomy", "api/pypath.utils.taxonomy.ensure_common_name", "api/pypath.utils.taxonomy.ensure_ensembl_name", "api/pypath.utils.taxonomy.ensure_latin_name", "api/pypath.utils.taxonomy.ensure_ncbi_tax_id", "api/pypath.utils.taxonomy.get_db", "api/pypath.utils.taxonomy.init_db", "api/pypath.utils.taxonomy.short_latin_names", "api/pypath.utils.taxonomy.shorten_latin_name", "api/pypath.utils.taxonomy.taxid_from_common_name", "api/pypath.utils.taxonomy.taxid_from_dbptm_taxon_name", "api/pypath.utils.taxonomy.taxid_from_ensembl_name", "api/pypath.utils.taxonomy.taxid_from_latin_name", "api/pypath.utils.taxonomy.taxid_from_nonstandard", "api/pypath.utils.taxonomy.uniprot_taxid", "api/pypath.utils.unichem", "api/pypath.utils.unichem.Unichem", "api/pypath.visual", "api/pypath.visual.drawing", "api/pypath.visual.drawing.InterSet", "api/pypath.visual.drawing.Plot", "api/pypath.visual.igraph_drawing", "api/pypath.visual.igraph_drawing.AbstractCairoGraphDrawer", "api/pypath.visual.igraph_drawing.ArrowEdgeDrawer", "api/pypath.visual.igraph_drawing.DefaultGraphDrawerFFsupport", "api/pypath.visual.igraph_drawing.DefaultVertexDrawer", "api/pypath.visual.igraph_drawing.TextDrawer", "api/pypath.visual.igraph_drawing.edge", "api/pypath.visual.igraph_drawing.edge.AbstractEdgeDrawer", "api/pypath.visual.igraph_drawing.edge.AlphaVaryingEdgeDrawer", "api/pypath.visual.igraph_drawing.edge.ArrowEdgeDrawer", "api/pypath.visual.igraph_drawing.edge.DarkToLightEdgeDrawer", "api/pypath.visual.igraph_drawing.edge.LightToDarkEdgeDrawer", "api/pypath.visual.igraph_drawing.edge.TaperedEdgeDrawer", "api/pypath.visual.igraph_drawing.vertex", "api/pypath.visual.igraph_drawing.vertex.AbstractCairoDrawer", "api/pypath.visual.igraph_drawing.vertex.AbstractCairoVertexDrawer", "api/pypath.visual.igraph_drawing.vertex.AbstractDrawer", "api/pypath.visual.igraph_drawing.vertex.AbstractVertexDrawer", "api/pypath.visual.igraph_drawing.vertex.DefaultVertexDrawer", "contents", "index", "notebooks/manual", "reference", "releasehistory", "webservice"], "filenames": ["api/pypath.rst", "api/pypath.core.rst", "api/pypath.core.attrs.rst", "api/pypath.core.attrs.AttributeHandler.rst", "api/pypath.core.common.rst", "api/pypath.core.common.filter_network_df.rst", "api/pypath.core.complex.rst", "api/pypath.core.complex.AbstractComplexResource.rst", "api/pypath.core.complex.CellPhoneDB.rst", "api/pypath.core.complex.Cellchatdb.rst", "api/pypath.core.complex.Cellinker.rst", "api/pypath.core.complex.Compleat.rst", "api/pypath.core.complex.ComplexAggregator.rst", "api/pypath.core.complex.ComplexPortal.rst", "api/pypath.core.complex.Corum.rst", "api/pypath.core.complex.GuideToPharmacology.rst", "api/pypath.core.complex.Havugimana.rst", "api/pypath.core.complex.Hpmr.rst", "api/pypath.core.complex.Humap.rst", "api/pypath.core.complex.Humap2.rst", "api/pypath.core.complex.Icellnet.rst", "api/pypath.core.complex.Kegg.rst", "api/pypath.core.complex.Pdb.rst", "api/pypath.core.complex.Signor.rst", "api/pypath.core.complex.Spike.rst", "api/pypath.core.complex.all_complexes.rst", "api/pypath.core.complex.get_db.rst", "api/pypath.core.complex.init_db.rst", "api/pypath.core.entity.rst", "api/pypath.core.entity.Entity.rst", "api/pypath.core.entity.EntityKey.rst", "api/pypath.core.entity.EntityList.rst", "api/pypath.core.enz_sub.rst", "api/pypath.core.enz_sub.EnzymeSubstrateAggregator.rst", "api/pypath.core.enz_sub.EnzymeSubstrateOrthologyProcessor.rst", "api/pypath.core.enz_sub.EnzymeSubstrateProcessor.rst", "api/pypath.core.enz_sub.get_db.rst", "api/pypath.core.enz_sub.init_db.rst", "api/pypath.core.evidence.rst", "api/pypath.core.evidence.Evidence.rst", "api/pypath.core.evidence.Evidences.rst", "api/pypath.core.interaction.rst", "api/pypath.core.interaction.Interaction.rst", "api/pypath.core.interaction.InteractionDataFrameRecord.rst", "api/pypath.core.interaction.InteractionKey.rst", "api/pypath.core.intercell_annot.rst", "api/pypath.core.intercell_annot.excludes.rst", "api/pypath.core.network.rst", "api/pypath.core.network.Network.rst", "api/pypath.core.network.NetworkEntityCollection.rst", "api/pypath.core.network.NetworkStatsRecord.rst", "api/pypath.core.network.get_db.rst", "api/pypath.core.network.init_db.rst", "api/pypath.data.rst", "api/pypath.disclaimer.rst", "api/pypath.info.rst", "api/pypath.inputs.rst", "api/pypath.inputs.abs.rst", "api/pypath.inputs.abs.abs_interactions.rst", "api/pypath.inputs.acsn.rst", "api/pypath.inputs.acsn.acsn_interactions.rst", "api/pypath.inputs.acsn.acsn_interactions_sif.rst", "api/pypath.inputs.adhesome.rst", "api/pypath.inputs.adhesome.adhesome_annotations.rst", "api/pypath.inputs.adhesome.adhesome_interactions.rst", "api/pypath.inputs.adrecs.rst", "api/pypath.inputs.adrecs.AdrecsAdr.rst", "api/pypath.inputs.adrecs.AdrecsChildParent.rst", "api/pypath.inputs.adrecs.AdrecsDrug.rst", "api/pypath.inputs.adrecs.AdrecsDrugAdr.rst", "api/pypath.inputs.adrecs.AdrecsTerm.rst", "api/pypath.inputs.adrecs.adrecs_adr_ontology.rst", "api/pypath.inputs.adrecs.adrecs_drug_adr.rst", "api/pypath.inputs.adrecs.adrecs_drug_identifiers.rst", "api/pypath.inputs.adrecs.adrecs_hierarchy.rst", "api/pypath.inputs.almen2009.rst", "api/pypath.inputs.almen2009.almen2009_annotations.rst", "api/pypath.inputs.baccin2019.rst", "api/pypath.inputs.baccin2019.baccin2019_annotations.rst", "api/pypath.inputs.baccin2019.baccin2019_interactions.rst", "api/pypath.inputs.biogps.rst", "api/pypath.inputs.biogps.BiogpsDataset.rst", "api/pypath.inputs.biogps.biogps_annotations.rst", "api/pypath.inputs.biogps.biogps_datasets.rst", "api/pypath.inputs.biogps.biogps_download.rst", "api/pypath.inputs.biogps.biogps_download_all.rst", "api/pypath.inputs.biogrid.rst", "api/pypath.inputs.biogrid.biogrid_all_interactions.rst", "api/pypath.inputs.biogrid.biogrid_interactions.rst", "api/pypath.inputs.biomart.rst", "api/pypath.inputs.biomart.biomart_homology.rst", "api/pypath.inputs.biomart.biomart_microarray.rst", "api/pypath.inputs.biomart.biomart_microarray_types.rst", "api/pypath.inputs.biomart.biomart_microarrays.rst", "api/pypath.inputs.biomart.biomart_query.rst", "api/pypath.inputs.biomodels.rst", "api/pypath.inputs.biomodels.download_single_model.rst", "api/pypath.inputs.biomodels.get_all_models.rst", "api/pypath.inputs.biomodels.get_biomodels.rst", "api/pypath.inputs.biomodels.get_biomodels_req.rst", "api/pypath.inputs.biomodels.get_single_model.rst", "api/pypath.inputs.ca1.rst", "api/pypath.inputs.ca1.ca1_interactions.rst", "api/pypath.inputs.cancercellmap.rst", "api/pypath.inputs.cancercellmap.ccmap_interactions.rst", "api/pypath.inputs.cancerdrugsdb.rst", "api/pypath.inputs.cancerdrugsdb.cancerdrugsdb_annotations.rst", "api/pypath.inputs.cancerdrugsdb.cancerdrugsdb_download.rst", "api/pypath.inputs.cancerdrugsdb.cancerdrugsdb_interactions.rst", "api/pypath.inputs.cancersea.rst", "api/pypath.inputs.cancersea.cancersea_annotations.rst", "api/pypath.inputs.cell.rst", "api/pypath.inputs.cell.cell_supplementary.rst", "api/pypath.inputs.cellcall.rst", "api/pypath.inputs.cellcall.cellcall_annotations.rst", "api/pypath.inputs.cellcall.cellcall_download.rst", "api/pypath.inputs.cellcall.cellcall_download_all.rst", "api/pypath.inputs.cellcall.cellcall_interactions.rst", "api/pypath.inputs.cellcellinteractions.rst", "api/pypath.inputs.cellcellinteractions.cellcellinteractions_annotations.rst", "api/pypath.inputs.cellchatdb.rst", "api/pypath.inputs.cellchatdb.cellchatdb_annotations.rst", "api/pypath.inputs.cellchatdb.cellchatdb_cofactors.rst", "api/pypath.inputs.cellchatdb.cellchatdb_complexes.rst", "api/pypath.inputs.cellchatdb.cellchatdb_download.rst", "api/pypath.inputs.cellchatdb.cellchatdb_interactions.rst", "api/pypath.inputs.cellinker.rst", "api/pypath.inputs.cellinker.CellinkerInteraction.rst", "api/pypath.inputs.cellinker.cellinker_annotations.rst", "api/pypath.inputs.cellinker.cellinker_complex_annotations.rst", "api/pypath.inputs.cellinker.cellinker_complexes.rst", "api/pypath.inputs.cellinker.cellinker_complexes_raw.rst", "api/pypath.inputs.cellinker.cellinker_lr_interactions.rst", "api/pypath.inputs.cellinker.cellinker_lr_interactions_raw.rst", "api/pypath.inputs.cellinker.cellinker_protein_annotations.rst", "api/pypath.inputs.cellinker.cellinker_smol_interactions.rst", "api/pypath.inputs.cellinker.cellinker_smol_interactions_raw.rst", "api/pypath.inputs.cellinker.components_to_complex.rst", "api/pypath.inputs.cellphonedb.rst", "api/pypath.inputs.cellphonedb.CellPhoneDBAnnotation.rst", "api/pypath.inputs.cellphonedb.cellphonedb_complex_annotations.rst", "api/pypath.inputs.cellphonedb.cellphonedb_complexes.rst", "api/pypath.inputs.cellphonedb.cellphonedb_interactions.rst", "api/pypath.inputs.cellphonedb.cellphonedb_ligands_receptors.rst", "api/pypath.inputs.cellphonedb.cellphonedb_protein_annotations.rst", "api/pypath.inputs.celltalkdb.rst", "api/pypath.inputs.celltalkdb.celltalkdb_annotations.rst", "api/pypath.inputs.celltalkdb.celltalkdb_download.rst", "api/pypath.inputs.celltalkdb.celltalkdb_interactions.rst", "api/pypath.inputs.celltypist.rst", "api/pypath.inputs.celltypist.celltypist_annotations.rst", "api/pypath.inputs.chembl.rst", "api/pypath.inputs.chembl.chembl_activities.rst", "api/pypath.inputs.chembl.chembl_assays.rst", "api/pypath.inputs.chembl.chembl_documents.rst", "api/pypath.inputs.chembl.chembl_drug_indications.rst", "api/pypath.inputs.chembl.chembl_mechanisms.rst", "api/pypath.inputs.chembl.chembl_molecules.rst", "api/pypath.inputs.chembl.chembl_targets.rst", "api/pypath.inputs.clinvar.rst", "api/pypath.inputs.clinvar.clinvar_citations.rst", "api/pypath.inputs.clinvar.clinvar_raw.rst", "api/pypath.inputs.collectri.rst", "api/pypath.inputs.collectri.collectri_interactions.rst", "api/pypath.inputs.collectri.collectri_raw.rst", "api/pypath.inputs.common.rst", "api/pypath.inputs.common.csv_sep_change.rst", "api/pypath.inputs.common.glom_fields.rst", "api/pypath.inputs.common.json_extract.rst", "api/pypath.inputs.common.json_read.rst", "api/pypath.inputs.common.read_table.rst", "api/pypath.inputs.common.read_xls.rst", "api/pypath.inputs.compath.rst", "api/pypath.inputs.compath.compath_mappings.rst", "api/pypath.inputs.compleat.rst", "api/pypath.inputs.compleat.compleat_complexes.rst", "api/pypath.inputs.compleat.compleat_raw.rst", "api/pypath.inputs.complexportal.rst", "api/pypath.inputs.complexportal.complexportal_complexes.rst", "api/pypath.inputs.comppi.rst", "api/pypath.inputs.comppi.comppi_interaction_locations.rst", "api/pypath.inputs.comppi.comppi_locations.rst", "api/pypath.inputs.connectomedb.rst", "api/pypath.inputs.connectomedb.connectomedb_annotations.rst", "api/pypath.inputs.connectomedb.connectomedb_interactions.rst", "api/pypath.inputs.corum.rst", "api/pypath.inputs.corum.corum_complexes.rst", "api/pypath.inputs.cosmic.rst", "api/pypath.inputs.cosmic.cancer_gene_census_annotations.rst", "api/pypath.inputs.cpad.rst", "api/pypath.inputs.cpad.cpad_annotations.rst", "api/pypath.inputs.cpad.cpad_pathway_cancer.rst", "api/pypath.inputs.cpad.get_cpad.rst", "api/pypath.inputs.cpdb.rst", "api/pypath.inputs.cpdb.cpdb_interactions.rst", "api/pypath.inputs.cpdb.cpdb_interactions_ltp.rst", "api/pypath.inputs.credentials.rst", "api/pypath.inputs.credentials.credentials.rst", "api/pypath.inputs.csa.rst", "api/pypath.inputs.csa.get_csa.rst", "api/pypath.inputs.cspa.rst", "api/pypath.inputs.cspa.cspa_annotations.rst", "api/pypath.inputs.cspa.cspa_cell_type_annotations.rst", "api/pypath.inputs.cspa.cspa_cell_types.rst", "api/pypath.inputs.ctdbase.rst", "api/pypath.inputs.ctdbase.ctdbase_relations.rst", "api/pypath.inputs.ctdbase.ctdbase_vocabulary.rst", "api/pypath.inputs.cytosig.rst", "api/pypath.inputs.cytosig.cytosig_annotations.rst", "api/pypath.inputs.cytosig.cytosig_df.rst", "api/pypath.inputs.dbptm.rst", "api/pypath.inputs.dbptm.dbptm_enzyme_substrate.rst", "api/pypath.inputs.dbptm.dbptm_enzyme_substrate_old.rst", "api/pypath.inputs.dbptm.dbptm_interactions.rst", "api/pypath.inputs.ddinter.rst", "api/pypath.inputs.ddinter.ddinter_drug_interactions.rst", "api/pypath.inputs.ddinter.ddinter_identifiers.rst", "api/pypath.inputs.ddinter.ddinter_interactions.rst", "api/pypath.inputs.ddinter.ddinter_mappings.rst", "api/pypath.inputs.ddinter.ddinter_n_drugs.rst", "api/pypath.inputs.deathdomain.rst", "api/pypath.inputs.deathdomain.deathdomain_interactions.rst", "api/pypath.inputs.deathdomain.deathdomain_interactions_rescued.rst", "api/pypath.inputs.depod.rst", "api/pypath.inputs.depod.depod_enzyme_substrate.rst", "api/pypath.inputs.depod.depod_interactions.rst", "api/pypath.inputs.dgidb.rst", "api/pypath.inputs.dgidb.dgidb_annotations.rst", "api/pypath.inputs.dgidb.dgidb_interactions.rst", "api/pypath.inputs.dgidb.get_dgidb_old.rst", "api/pypath.inputs.dip.rst", "api/pypath.inputs.dip.dip_interactions.rst", "api/pypath.inputs.dip.dip_login.rst", "api/pypath.inputs.diseases.rst", "api/pypath.inputs.diseases.diseases_general.rst", "api/pypath.inputs.diseases.experiments_filtered.rst", "api/pypath.inputs.diseases.experiments_full.rst", "api/pypath.inputs.diseases.knowledge_filtered.rst", "api/pypath.inputs.diseases.knowledge_full.rst", "api/pypath.inputs.diseases.textmining_filtered.rst", "api/pypath.inputs.diseases.textmining_full.rst", "api/pypath.inputs.domino.rst", "api/pypath.inputs.domino.domino_ddi.rst", "api/pypath.inputs.domino.domino_enzsub.rst", "api/pypath.inputs.domino.domino_interactions.rst", "api/pypath.inputs.domino.get_domino.rst", "api/pypath.inputs.dorothea.rst", "api/pypath.inputs.dorothea.DorotheaInteraction.rst", "api/pypath.inputs.dorothea.dorothea_full_raw.rst", "api/pypath.inputs.dorothea.dorothea_interactions.rst", "api/pypath.inputs.dorothea.dorothea_interactions_old.rst", "api/pypath.inputs.dorothea.dorothea_old_csv.rst", "api/pypath.inputs.dorothea.dorothea_rda_raw.rst", "api/pypath.inputs.dorothea.get_dorothea_old.rst", "api/pypath.inputs.dorothea.get_tfregulons.rst", "api/pypath.inputs.dorothea.tfregulons_interactions.rst", "api/pypath.inputs.dorothea.tfregulons_interactions_old.rst", "api/pypath.inputs.drugbank.rst", "api/pypath.inputs.drugbank.DrugbankFull.rst", "api/pypath.inputs.drugbank.drugbank_annotations.rst", "api/pypath.inputs.drugbank.drugbank_drugs.rst", "api/pypath.inputs.drugbank.drugbank_interactions.rst", "api/pypath.inputs.drugbank.drugbank_mapping.rst", "api/pypath.inputs.drugbank.drugbank_raw_interactions.rst", "api/pypath.inputs.drugcentral.rst", "api/pypath.inputs.drugcentral.drugcentral_drugs.rst", "api/pypath.inputs.drugcentral.drugcentral_interactions.rst", "api/pypath.inputs.drugcentral.drugcentral_mapping.rst", "api/pypath.inputs.ebi.rst", "api/pypath.inputs.ebi.ebi_rest.rst", "api/pypath.inputs.elm.rst", "api/pypath.inputs.elm.elm_classes.rst", "api/pypath.inputs.elm.elm_domains.rst", "api/pypath.inputs.elm.elm_instances.rst", "api/pypath.inputs.elm.elm_interactions.rst", "api/pypath.inputs.embopress.rst", "api/pypath.inputs.embopress.embopress_supplementary.rst", "api/pypath.inputs.embrace.rst", "api/pypath.inputs.embrace.embrace_annotations.rst", "api/pypath.inputs.embrace.embrace_interactions.rst", "api/pypath.inputs.embrace.embrace_raw.rst", "api/pypath.inputs.embrace.embrace_translated.rst", "api/pypath.inputs.encode.rst", "api/pypath.inputs.encode.encode_tf_mirna_interactions.rst", "api/pypath.inputs.ensembl.rst", "api/pypath.inputs.ensembl.ensembl_organisms.rst", "api/pypath.inputs.eutils.rst", "api/pypath.inputs.eutils.esummary.rst", "api/pypath.inputs.exocarta.rst", "api/pypath.inputs.exocarta.get_exocarta.rst", "api/pypath.inputs.exocarta.get_vesiclepedia.rst", "api/pypath.inputs.expasy.rst", "api/pypath.inputs.expasy.expasy_enzyme_classes.rst", "api/pypath.inputs.expasy.expasy_enzymes.rst", "api/pypath.inputs.genecards.rst", "api/pypath.inputs.genecards.genecards_datasheet.rst", "api/pypath.inputs.genecards.genecards_soup.rst", "api/pypath.inputs.genecards.genecards_summaries.rst", "api/pypath.inputs.get_method.rst", "api/pypath.inputs.go.rst", "api/pypath.inputs.go.get_go_desc.rst", "api/pypath.inputs.go.get_go_quick.rst", "api/pypath.inputs.go.get_goslim.rst", "api/pypath.inputs.go.go_ancestors.rst", "api/pypath.inputs.go.go_ancestors_goose.rst", "api/pypath.inputs.go.go_ancestors_quickgo.rst", "api/pypath.inputs.go.go_annotations.rst", "api/pypath.inputs.go.go_annotations_all.rst", "api/pypath.inputs.go.go_annotations_goa.rst", "api/pypath.inputs.go.go_annotations_goose.rst", "api/pypath.inputs.go.go_annotations_quickgo.rst", "api/pypath.inputs.go.go_annotations_solr.rst", "api/pypath.inputs.go.go_annotations_uniprot.rst", "api/pypath.inputs.go.go_descendants.rst", "api/pypath.inputs.go.go_descendants_goose.rst", "api/pypath.inputs.go.go_descendants_quickgo.rst", "api/pypath.inputs.go.go_descendants_to_ancestors.rst", "api/pypath.inputs.go.go_terms.rst", "api/pypath.inputs.go.go_terms_goose.rst", "api/pypath.inputs.go.go_terms_quickgo.rst", "api/pypath.inputs.go.go_terms_solr.rst", "api/pypath.inputs.gpcrdb.rst", "api/pypath.inputs.gpcrdb.gpcrdb_annotations.rst", "api/pypath.inputs.graphviz.rst", "api/pypath.inputs.graphviz.graphviz_attrs.rst", "api/pypath.inputs.guide2pharma.rst", "api/pypath.inputs.guide2pharma.guide2pharma_complexes.rst", "api/pypath.inputs.guide2pharma.guide2pharma_download.rst", "api/pypath.inputs.guide2pharma.guide2pharma_interactions.rst", "api/pypath.inputs.gutmgene.rst", "api/pypath.inputs.gutmgene.GutmgeneAnnotation.rst", "api/pypath.inputs.gutmgene.GutmgeneRaw.rst", "api/pypath.inputs.gutmgene.gutmgene_annotations.rst", "api/pypath.inputs.gutmgene.gutmgene_raw.rst", "api/pypath.inputs.havugimana.rst", "api/pypath.inputs.havugimana.get_havugimana.rst", "api/pypath.inputs.havugimana.havugimana_complexes.rst", "api/pypath.inputs.hgnc.rst", "api/pypath.inputs.hgnc.hgnc_genegroups.rst", "api/pypath.inputs.hippie.rst", "api/pypath.inputs.hippie.hippie_interactions.rst", "api/pypath.inputs.hmdb.rst", "api/pypath.inputs.hmdb.common.rst", "api/pypath.inputs.hmdb.common.iter.rst", "api/pypath.inputs.hmdb.common.mapping.rst", "api/pypath.inputs.hmdb.common.raw.rst", "api/pypath.inputs.hmdb.common.table.rst", "api/pypath.inputs.hmdb.metabolites.rst", "api/pypath.inputs.hmdb.metabolites.iter.rst", "api/pypath.inputs.hmdb.metabolites.mapping.rst", "api/pypath.inputs.hmdb.metabolites.raw.rst", "api/pypath.inputs.hmdb.metabolites.table.rst", "api/pypath.inputs.hmdb.proteins.rst", "api/pypath.inputs.hmdb.proteins.iter.rst", "api/pypath.inputs.hmdb.proteins.mapping.rst", "api/pypath.inputs.hmdb.proteins.raw.rst", "api/pypath.inputs.hmdb.proteins.table.rst", "api/pypath.inputs.hmdb.schema.rst", "api/pypath.inputs.hmdb.schema.common.rst", "api/pypath.inputs.hmdb.schema.common.Field.rst", "api/pypath.inputs.hmdb.schema.metabolites.rst", "api/pypath.inputs.hmdb.schema.proteins.rst", "api/pypath.inputs.hmdb.structures.rst", "api/pypath.inputs.hmdb.structures.sdf.rst", "api/pypath.inputs.hmdb.visual.rst", "api/pypath.inputs.hmdb.visual.show_structure.rst", "api/pypath.inputs.hmdb.visual.structure_svg.rst", "api/pypath.inputs.hmdb.xml.rst", "api/pypath.inputs.hmdb.xml.hmdb_xml.rst", "api/pypath.inputs.homologene.rst", "api/pypath.inputs.homologene.get_homologene.rst", "api/pypath.inputs.homologene.homologene_dict.rst", "api/pypath.inputs.homologene.homologene_uniprot_dict.rst", "api/pypath.inputs.hpmr.rst", "api/pypath.inputs.hpmr.HpmrInteraction.rst", "api/pypath.inputs.hpmr.get_hpmr.rst", "api/pypath.inputs.hpmr.hpmr_annotations.rst", "api/pypath.inputs.hpmr.hpmr_complexes.rst", "api/pypath.inputs.hpmr.hpmr_interactions.rst", "api/pypath.inputs.hpo.rst", "api/pypath.inputs.hpo.hpo_annotations.rst", "api/pypath.inputs.hpo.hpo_diseases.rst", "api/pypath.inputs.hpo.hpo_ontology.rst", "api/pypath.inputs.hpo.hpo_terms.rst", "api/pypath.inputs.hprd.rst", "api/pypath.inputs.hprd.get_hprd.rst", "api/pypath.inputs.hprd.hprd_enzyme_substrate.rst", "api/pypath.inputs.hprd.hprd_interactions.rst", "api/pypath.inputs.hprd.hprd_interactions_htp.rst", "api/pypath.inputs.htri.rst", "api/pypath.inputs.htri.htri_interactions.rst", "api/pypath.inputs.humancellmap.rst", "api/pypath.inputs.humancellmap.humancellmap_annotations.rst", "api/pypath.inputs.humap.rst", "api/pypath.inputs.humap.humap2_complexes.rst", "api/pypath.inputs.humap.humap_complexes.rst", "api/pypath.inputs.humsavar.rst", "api/pypath.inputs.humsavar.uniprot_variants.rst", "api/pypath.inputs.huri.rst", "api/pypath.inputs.huri.hi_i_interactions.rst", "api/pypath.inputs.huri.hi_ii_interactions.rst", "api/pypath.inputs.huri.hi_iii_old.rst", "api/pypath.inputs.huri.hi_union_interactions.rst", "api/pypath.inputs.huri.huri_interactions.rst", "api/pypath.inputs.huri.lit_bm_13_interactions.rst", "api/pypath.inputs.huri.lit_bm_17_interactions.rst", "api/pypath.inputs.huri.lit_bm_interactions.rst", "api/pypath.inputs.huri.rolland_hi_ii_14.rst", "api/pypath.inputs.huri.vidal_hi_iii_old.rst", "api/pypath.inputs.huri.yang2016_interactions.rst", "api/pypath.inputs.huri.yu2011_interactions.rst", "api/pypath.inputs.i3d.rst", "api/pypath.inputs.i3d.get_i3d.rst", "api/pypath.inputs.icellnet.rst", "api/pypath.inputs.icellnet.IcellnetRecord.rst", "api/pypath.inputs.icellnet.icellnet_annotations.rst", "api/pypath.inputs.icellnet.icellnet_complexes.rst", "api/pypath.inputs.icellnet.icellnet_interactions.rst", "api/pypath.inputs.ielm.rst", "api/pypath.inputs.ielm.get_ielm.rst", "api/pypath.inputs.ielm.get_ielm_huge.rst", "api/pypath.inputs.imweb.rst", "api/pypath.inputs.imweb.get_imweb.rst", "api/pypath.inputs.imweb.get_imweb_req.rst", "api/pypath.inputs.innatedb.rst", "api/pypath.inputs.innatedb.innatedb_interactions.rst", "api/pypath.inputs.instruct.rst", "api/pypath.inputs.instruct.get_instruct.rst", "api/pypath.inputs.instruct.get_instruct_offsets.rst", "api/pypath.inputs.intact.rst", "api/pypath.inputs.intact.intact_interactions.rst", "api/pypath.inputs.integrins.rst", "api/pypath.inputs.integrins.get_integrins.rst", "api/pypath.inputs.interpro.rst", "api/pypath.inputs.interpro.interpro2go_annotations.rst", "api/pypath.inputs.interpro.interpro_annotations.rst", "api/pypath.inputs.interpro.interpro_entries.rst", "api/pypath.inputs.interpro.interpro_xrefs.rst", "api/pypath.inputs.intogen.rst", "api/pypath.inputs.intogen.intogen_annotations.rst", "api/pypath.inputs.ipi.rst", "api/pypath.inputs.ipi.ipi_uniprot.rst", "api/pypath.inputs.iptmnet.rst", "api/pypath.inputs.iptmnet.IptmnetInteraction.rst", "api/pypath.inputs.iptmnet.iptmnet_interactions.rst", "api/pypath.inputs.italk.rst", "api/pypath.inputs.italk.italk_annotations.rst", "api/pypath.inputs.italk.italk_interactions.rst", "api/pypath.inputs.italk.italk_raw.rst", "api/pypath.inputs.kea.rst", "api/pypath.inputs.kea.kea_enzyme_substrate.rst", "api/pypath.inputs.kea.kea_interactions.rst", "api/pypath.inputs.kegg.rst", "api/pypath.inputs.kegg.KeggPathway.rst", "api/pypath.inputs.kegg.kegg_dbget.rst", "api/pypath.inputs.kegg.kegg_interactions.rst", "api/pypath.inputs.kegg.kegg_medicus.rst", "api/pypath.inputs.kegg.kegg_medicus_complexes.rst", "api/pypath.inputs.kegg.kegg_medicus_interactions.rst", "api/pypath.inputs.kegg.kegg_pathway_annotations.rst", "api/pypath.inputs.kegg.kegg_pathway_annotations_pathwaycommons.rst", "api/pypath.inputs.kegg.kegg_pathways.rst", "api/pypath.inputs.kegg_api.rst", "api/pypath.inputs.kegg_api.disease_to_drug.rst", "api/pypath.inputs.kegg_api.disease_to_gene.rst", "api/pypath.inputs.kegg_api.disease_to_pathway.rst", "api/pypath.inputs.kegg_api.drug_to_disease.rst", "api/pypath.inputs.kegg_api.drug_to_drug.rst", "api/pypath.inputs.kegg_api.drug_to_gene.rst", "api/pypath.inputs.kegg_api.drug_to_pathway.rst", "api/pypath.inputs.kegg_api.gene_to_disease.rst", "api/pypath.inputs.kegg_api.gene_to_drug.rst", "api/pypath.inputs.kegg_api.gene_to_pathway.rst", "api/pypath.inputs.kegg_api.kegg_drug_to_chebi.rst", "api/pypath.inputs.kegg_api.kegg_gene_to_ncbi_geneid.rst", "api/pypath.inputs.kegg_api.kegg_gene_to_uniprot.rst", "api/pypath.inputs.kegg_api.pathway_to_disease.rst", "api/pypath.inputs.kegg_api.pathway_to_drug.rst", "api/pypath.inputs.kegg_api.pathway_to_gene.rst", "api/pypath.inputs.kinasedotcom.rst", "api/pypath.inputs.kinasedotcom.kinasedotcom_annotations.rst", "api/pypath.inputs.kirouac2010.rst", "api/pypath.inputs.kirouac2010.kirouac2010_interactions.rst", "api/pypath.inputs.lambert2018.rst", "api/pypath.inputs.lambert2018.lambert2018_annotations.rst", "api/pypath.inputs.lambert2018.lambert2018_s1_raw.rst", "api/pypath.inputs.laudanna.rst", "api/pypath.inputs.laudanna.laudanna_directions.rst", "api/pypath.inputs.laudanna.laudanna_effects.rst", "api/pypath.inputs.li2012.rst", "api/pypath.inputs.li2012.get_li2012.rst", "api/pypath.inputs.li2012.li2012_dmi.rst", "api/pypath.inputs.li2012.li2012_enzyme_substrate.rst", "api/pypath.inputs.li2012.li2012_interactions.rst", "api/pypath.inputs.lincs.rst", "api/pypath.inputs.lincs.lincs_compounds.rst", "api/pypath.inputs.lmpid.rst", "api/pypath.inputs.lmpid.lmpid_dmi.rst", "api/pypath.inputs.lmpid.lmpid_interactions.rst", "api/pypath.inputs.lmpid.load_lmpid.rst", "api/pypath.inputs.lncdisease.rst", "api/pypath.inputs.lncdisease.lncdisease_interactions.rst", "api/pypath.inputs.lncrnadb.rst", "api/pypath.inputs.lncrnadb.lncrnadb_interactions.rst", "api/pypath.inputs.locate.rst", "api/pypath.inputs.locate.locate_localizations.rst", "api/pypath.inputs.lrdb.rst", "api/pypath.inputs.lrdb.LrdbAnnotation.rst", "api/pypath.inputs.lrdb.lrdb_annotations.rst", "api/pypath.inputs.lrdb.lrdb_interactions.rst", "api/pypath.inputs.macrophage.rst", "api/pypath.inputs.macrophage.macrophage_interactions.rst", "api/pypath.inputs.main.rst", "api/pypath.inputs.matrisome.rst", "api/pypath.inputs.matrisome.matrisome_annotations.rst", "api/pypath.inputs.matrixdb.rst", "api/pypath.inputs.matrixdb.matrixdb_annotations.rst", "api/pypath.inputs.matrixdb.matrixdb_ecm_proteins.rst", "api/pypath.inputs.matrixdb.matrixdb_interactions.rst", "api/pypath.inputs.matrixdb.matrixdb_membrane_proteins.rst", "api/pypath.inputs.matrixdb.matrixdb_secreted_proteins.rst", "api/pypath.inputs.mcam.rst", "api/pypath.inputs.mcam.mcam_cell_adhesion_molecules.rst", "api/pypath.inputs.membranome.rst", "api/pypath.inputs.membranome.membranome_annotations.rst", "api/pypath.inputs.mimp.rst", "api/pypath.inputs.mimp.get_kinase_class.rst", "api/pypath.inputs.mimp.mimp_enzyme_substrate.rst", "api/pypath.inputs.mimp.mimp_interactions.rst", "api/pypath.inputs.mir2disease.rst", "api/pypath.inputs.mir2disease.mir2disease_interactions.rst", "api/pypath.inputs.mirbase.rst", "api/pypath.inputs.mirbase.get_mirbase_aliases.rst", "api/pypath.inputs.mirbase.mirbase_ids.rst", "api/pypath.inputs.mirbase.mirbase_mature.rst", "api/pypath.inputs.mirbase.mirbase_mature_all.rst", "api/pypath.inputs.mirbase.mirbase_precursor.rst", "api/pypath.inputs.mirbase.mirbase_precursor_all.rst", "api/pypath.inputs.mirbase.mirbase_precursor_to_mature.rst", "api/pypath.inputs.mirdeathdb.rst", "api/pypath.inputs.mirdeathdb.mirdeathdb_interactions.rst", "api/pypath.inputs.mirecords.rst", "api/pypath.inputs.mirecords.mirecords_interactions.rst", "api/pypath.inputs.mirtarbase.rst", "api/pypath.inputs.mirtarbase.mirtarbase_interactions.rst", "api/pypath.inputs.mitab.rst", "api/pypath.inputs.mitab.mitab_field_list.rst", "api/pypath.inputs.mitab.mitab_field_uniprot.rst", "api/pypath.inputs.mppi.rst", "api/pypath.inputs.mppi.mppi_interactions.rst", "api/pypath.inputs.msigdb.rst", "api/pypath.inputs.msigdb.msigdb_annotations.rst", "api/pypath.inputs.msigdb.msigdb_download.rst", "api/pypath.inputs.msigdb.msigdb_download_collections.rst", "api/pypath.inputs.ncrdeathdb.rst", "api/pypath.inputs.ncrdeathdb.ncrdeathdb_interactions.rst", "api/pypath.inputs.negatome.rst", "api/pypath.inputs.negatome.negatome_interactions.rst", "api/pypath.inputs.netbiol.rst", "api/pypath.inputs.netbiol.arn_interactions.rst", "api/pypath.inputs.netbiol.nrf2ome_interactions.rst", "api/pypath.inputs.netpath.rst", "api/pypath.inputs.netpath.netpath_interactions.rst", "api/pypath.inputs.netpath.netpath_names.rst", "api/pypath.inputs.netpath.netpath_pathway_annotations.rst", "api/pypath.inputs.offsides.rst", "api/pypath.inputs.offsides.offsides_side_effects.rst", "api/pypath.inputs.oma.rst", "api/pypath.inputs.oma.oma_orthologs.rst", "api/pypath.inputs.oma.oma_table.rst", "api/pypath.inputs.ontology.rst", "api/pypath.inputs.ontology.listof_ontologies.rst", "api/pypath.inputs.ontology.ontology.rst", "api/pypath.inputs.opentargets.rst", "api/pypath.inputs.opentargets.opentargets_adverse_reactions.rst", "api/pypath.inputs.opentargets.opentargets_baseline_expression.rst", "api/pypath.inputs.opentargets.opentargets_direct_score.rst", "api/pypath.inputs.opentargets.opentargets_general.rst", "api/pypath.inputs.opentargets.opentargets_indirect_score.rst", "api/pypath.inputs.opm.rst", "api/pypath.inputs.opm.opm_annotations.rst", "api/pypath.inputs.oreganno.rst", "api/pypath.inputs.oreganno.oreganno_interactions.rst", "api/pypath.inputs.oreganno.oreganno_raw.rst", "api/pypath.inputs.panglaodb.rst", "api/pypath.inputs.panglaodb.panglaodb_annotations.rst", "api/pypath.inputs.panglaodb.panglaodb_raw.rst", "api/pypath.inputs.pathophenodb.rst", "api/pypath.inputs.pathophenodb.DiseasePathogen.rst", "api/pypath.inputs.pathophenodb.disease_pathogen_interactions.rst", "api/pypath.inputs.pathwaycommons.rst", "api/pypath.inputs.pathwaycommons.PathwayCommonsInteraction.rst", "api/pypath.inputs.pathwaycommons.PathwayCommonsResource.rst", "api/pypath.inputs.pathwaycommons.pathwaycommons_bind_interactions.rst", "api/pypath.inputs.pathwaycommons.pathwaycommons_biogrid_interactions.rst", "api/pypath.inputs.pathwaycommons.pathwaycommons_corum_interactions.rst", "api/pypath.inputs.pathwaycommons.pathwaycommons_dip_interactions.rst", "api/pypath.inputs.pathwaycommons.pathwaycommons_hprd_interactions.rst", "api/pypath.inputs.pathwaycommons.pathwaycommons_inoh_interactions.rst", "api/pypath.inputs.pathwaycommons.pathwaycommons_intact_interactions.rst", "api/pypath.inputs.pathwaycommons.pathwaycommons_interactions.rst", "api/pypath.inputs.pathwaycommons.pathwaycommons_kegg_interactions.rst", "api/pypath.inputs.pathwaycommons.pathwaycommons_netpath_interactions.rst", "api/pypath.inputs.pathwaycommons.pathwaycommons_panther_interactions.rst", "api/pypath.inputs.pathwaycommons.pathwaycommons_phosphosite_interactions.rst", "api/pypath.inputs.pathwaycommons.pathwaycommons_reactome_interactions.rst", "api/pypath.inputs.pathwaycommons.pathwaycommons_wikipathways_interactions.rst", "api/pypath.inputs.pazar.rst", "api/pypath.inputs.pazar.pazar_interactions.rst", "api/pypath.inputs.pdb.rst", "api/pypath.inputs.pdb.pdb_chains.rst", "api/pypath.inputs.pdb.pdb_complexes.rst", "api/pypath.inputs.pdb.pdb_uniprot.rst", "api/pypath.inputs.pdzbase.rst", "api/pypath.inputs.pdzbase.pdzbase_interactions.rst", "api/pypath.inputs.pepcyber.rst", "api/pypath.inputs.pepcyber.pepcyber_details.rst", "api/pypath.inputs.pepcyber.pepcyber_interactions.rst", "api/pypath.inputs.pfam.rst", "api/pypath.inputs.pfam.pfam_names.rst", "api/pypath.inputs.pfam.pfam_pdb.rst", "api/pypath.inputs.pfam.pfam_regions.rst", "api/pypath.inputs.pfam.pfam_uniprot.rst", "api/pypath.inputs.pharos.rst", "api/pypath.inputs.pharos.pharos_diseases.rst", "api/pypath.inputs.pharos.pharos_expression.rst", "api/pypath.inputs.pharos.pharos_general.rst", "api/pypath.inputs.pharos.pharos_gtex.rst", "api/pypath.inputs.pharos.pharos_ligands.rst", "api/pypath.inputs.pharos.pharos_orthologs.rst", "api/pypath.inputs.pharos.pharos_targets.rst", "api/pypath.inputs.pharos.pharos_xrefs.rst", "api/pypath.inputs.phobius.rst", "api/pypath.inputs.phobius.phobius_annotations.rst", "api/pypath.inputs.phosphatome.rst", "api/pypath.inputs.phosphatome.phosphatome_annotations.rst", "api/pypath.inputs.phosphoelm.rst", "api/pypath.inputs.phosphoelm.phosphoelm_enzyme_substrate.rst", "api/pypath.inputs.phosphoelm.phosphoelm_interactions.rst", "api/pypath.inputs.phosphoelm.phosphoelm_kinases.rst", "api/pypath.inputs.phosphonetworks.rst", "api/pypath.inputs.phosphonetworks.phosphonetworks_enzyme_substrate.rst", "api/pypath.inputs.phosphonetworks.phosphonetworks_interactions.rst", "api/pypath.inputs.phosphopoint.rst", "api/pypath.inputs.phosphopoint.phosphopoint_directions.rst", "api/pypath.inputs.phosphopoint.phosphopoint_interactions.rst", "api/pypath.inputs.phosphosite.rst", "api/pypath.inputs.phosphosite.phosphosite_directions.rst", "api/pypath.inputs.phosphosite.phosphosite_enzyme_substrate.rst", "api/pypath.inputs.phosphosite.phosphosite_interactions.rst", "api/pypath.inputs.phosphosite.phosphosite_interactions_all.rst", "api/pypath.inputs.phosphosite.phosphosite_interactions_curated.rst", "api/pypath.inputs.phosphosite.phosphosite_interactions_new.rst", "api/pypath.inputs.phosphosite.phosphosite_interactions_noref.rst", "api/pypath.inputs.phosphosite.phosphosite_ptm_orthology.rst", "api/pypath.inputs.phosphosite.phosphosite_ptms.rst", "api/pypath.inputs.phosphosite.phosphosite_regsites.rst", "api/pypath.inputs.phosphosite.phosphosite_regsites_one_organism.rst", "api/pypath.inputs.phosphosite.regsites_tab.rst", "api/pypath.inputs.pisa.rst", "api/pypath.inputs.pisa.PisaBond.rst", "api/pypath.inputs.pisa.pisa_bonds.rst", "api/pypath.inputs.pisa.pisa_interfaces.rst", "api/pypath.inputs.pro.rst", "api/pypath.inputs.pro.get_pro.rst", "api/pypath.inputs.pro.pro_mapping.rst", "api/pypath.inputs.progeny.rst", "api/pypath.inputs.progeny.progeny_annotations.rst", "api/pypath.inputs.progeny.progeny_raw.rst", "api/pypath.inputs.proteinatlas.rst", "api/pypath.inputs.proteinatlas.get_proteinatlas.rst", "api/pypath.inputs.proteinatlas.proteinatlas_annotations.rst", "api/pypath.inputs.proteinatlas.proteinatlas_secretome_annotations.rst", "api/pypath.inputs.proteinatlas.proteinatlas_subcellular_annotations.rst", "api/pypath.inputs.proteins.rst", "api/pypath.inputs.proteins.variants.rst", "api/pypath.inputs.protmapper.rst", "api/pypath.inputs.protmapper.get_protmapper.rst", "api/pypath.inputs.protmapper.protmapper_enzyme_substrate.rst", "api/pypath.inputs.protmapper.protmapper_interactions.rst", "api/pypath.inputs.pubchem.rst", "api/pypath.inputs.pubchem.pubchem_mapping.rst", "api/pypath.inputs.pubmed.rst", "api/pypath.inputs.pubmed.get_pmid.rst", "api/pypath.inputs.pubmed.get_pubmeds.rst", "api/pypath.inputs.pubmed.only_pmids.rst", "api/pypath.inputs.pubmed.open_pubmed.rst", "api/pypath.inputs.pubmed.pmids_dict.rst", "api/pypath.inputs.pubmed.pmids_list.rst", "api/pypath.inputs.ramilowski2015.rst", "api/pypath.inputs.ramilowski2015.ramilowski_interactions.rst", "api/pypath.inputs.ramilowski2015.ramilowski_locations.rst", "api/pypath.inputs.ramp.rst", "api/pypath.inputs.ramp.ramp_id_types.rst", "api/pypath.inputs.ramp.ramp_id_types_2.rst", "api/pypath.inputs.ramp.ramp_list_tables.rst", "api/pypath.inputs.ramp.ramp_mapping.rst", "api/pypath.inputs.ramp.ramp_raw.rst", "api/pypath.inputs.ramp.ramp_show_tables.rst", "api/pypath.inputs.rdata.rst", "api/pypath.inputs.reaction.rst", "api/pypath.inputs.reaction.acsn_biopax.rst", "api/pypath.inputs.reaction.acsn_interactions_2.rst", "api/pypath.inputs.reaction.get_acsn_effects.rst", "api/pypath.inputs.reaction.get_controls.rst", "api/pypath.inputs.reaction.get_interactions.rst", "api/pypath.inputs.reaction.get_reactions.rst", "api/pypath.inputs.reaction.get_soup.rst", "api/pypath.inputs.reaction.panther_biopax.rst", "api/pypath.inputs.reaction.panther_interactions.rst", "api/pypath.inputs.reaction.pid_biopax.rst", "api/pypath.inputs.reaction.pid_interactions.rst", "api/pypath.inputs.reaction.process_complex.rst", "api/pypath.inputs.reaction.process_controls.rst", "api/pypath.inputs.reaction.process_reactions.rst", "api/pypath.inputs.reaction.reactions_biopax.rst", "api/pypath.inputs.reaction.reactome_biopax.rst", "api/pypath.inputs.reaction.reactome_bs.rst", "api/pypath.inputs.reaction.reactome_interactions.rst", "api/pypath.inputs.reaction.reactome_sbml.rst", "api/pypath.inputs.reactome.rst", "api/pypath.inputs.reactome.reactome_chebis.rst", "api/pypath.inputs.reactome.reactome_pathway_relations.rst", "api/pypath.inputs.reactome.reactome_pathways.rst", "api/pypath.inputs.reactome.reactome_uniprots.rst", "api/pypath.inputs.scconnect.rst", "api/pypath.inputs.scconnect.scconnect_annotations.rst", "api/pypath.inputs.scconnect.scconnect_complexes.rst", "api/pypath.inputs.scconnect.scconnect_interactions.rst", "api/pypath.inputs.science.rst", "api/pypath.inputs.science.science_download.rst", "api/pypath.inputs.sider.rst", "api/pypath.inputs.sider.SiderDrug.rst", "api/pypath.inputs.sider.SiderSideeffect.rst", "api/pypath.inputs.sider.SiderSideeffectMeddra.rst", "api/pypath.inputs.sider.SiderSideeffetFrequency.rst", "api/pypath.inputs.sider.sider_drug_names.rst", "api/pypath.inputs.sider.sider_meddra_side_effects.rst", "api/pypath.inputs.sider.sider_side_effect_frequencies.rst", "api/pypath.inputs.sider.sider_side_effects.rst", "api/pypath.inputs.signalink.rst", "api/pypath.inputs.signalink.signalink_annotations.rst", "api/pypath.inputs.signalink.signalink_function_annotations.rst", "api/pypath.inputs.signalink.signalink_interactions.rst", "api/pypath.inputs.signalink.signalink_pathway_annotations.rst", "api/pypath.inputs.signor.rst", "api/pypath.inputs.signor.signor_complexes.rst", "api/pypath.inputs.signor.signor_enzyme_substrate.rst", "api/pypath.inputs.signor.signor_interactions.rst", "api/pypath.inputs.signor.signor_pathway_annotations.rst", "api/pypath.inputs.signor.signor_pathways.rst", "api/pypath.inputs.signor.signor_protein_families.rst", "api/pypath.inputs.spike.rst", "api/pypath.inputs.spike.spike_complexes.rst", "api/pypath.inputs.spike.spike_interactions.rst", "api/pypath.inputs.stitch.rst", "api/pypath.inputs.stitch.stitch_actions_interactions.rst", "api/pypath.inputs.stitch.stitch_links_interactions.rst", "api/pypath.inputs.string.rst", "api/pypath.inputs.string.string_effects.rst", "api/pypath.inputs.string.string_links_interactions.rst", "api/pypath.inputs.string.string_physical_interactions.rst", "api/pypath.inputs.string.string_species.rst", "api/pypath.inputs.surfaceome.rst", "api/pypath.inputs.surfaceome.surfaceome_annotations.rst", "api/pypath.inputs.switches_elm.rst", "api/pypath.inputs.switches_elm.get_switches_elm.rst", "api/pypath.inputs.talklr.rst", "api/pypath.inputs.talklr.talklr_annotations.rst", "api/pypath.inputs.talklr.talklr_interactions.rst", "api/pypath.inputs.talklr.talklr_raw.rst", "api/pypath.inputs.tcdb.rst", "api/pypath.inputs.tcdb.tcdb_annotations.rst", "api/pypath.inputs.tcdb.tcdb_classes.rst", "api/pypath.inputs.tcdb.tcdb_families.rst", "api/pypath.inputs.tfcensus.rst", "api/pypath.inputs.tfcensus.tfcensus_annotations.rst", "api/pypath.inputs.threedcomplex.rst", "api/pypath.inputs.threedcomplex.threedcomplex_chains.rst", "api/pypath.inputs.threedcomplex.threedcomplex_complexes.rst", "api/pypath.inputs.threedcomplex.threedcomplex_contacts.rst", "api/pypath.inputs.threedcomplex.threedcomplex_ddi.rst", "api/pypath.inputs.threedcomplex.threedcomplex_nresidues.rst", "api/pypath.inputs.threedid.rst", "api/pypath.inputs.threedid.get_3did.rst", "api/pypath.inputs.threedid.get_3did_ddi.rst", "api/pypath.inputs.threedid.get_3did_dmi.rst", "api/pypath.inputs.threedid.process_3did_dmi.rst", "api/pypath.inputs.topdb.rst", "api/pypath.inputs.topdb.topdb_annotations.rst", "api/pypath.inputs.transmir.rst", "api/pypath.inputs.transmir.transmir_interactions.rst", "api/pypath.inputs.trip.rst", "api/pypath.inputs.trip.take_a_trip.rst", "api/pypath.inputs.trip.trip_find_uniprot.rst", "api/pypath.inputs.trip.trip_get_uniprot.rst", "api/pypath.inputs.trip.trip_interactions.rst", "api/pypath.inputs.trip.trip_process.rst", "api/pypath.inputs.trip.trip_process_table.rst", "api/pypath.inputs.trrust.rst", "api/pypath.inputs.trrust.trrust_human.rst", "api/pypath.inputs.trrust.trrust_interactions.rst", "api/pypath.inputs.trrust.trrust_mouse.rst", "api/pypath.inputs.twosides.rst", "api/pypath.inputs.twosides.twosides_interactions.rst", "api/pypath.inputs.unichem.rst", "api/pypath.inputs.unichem.info.rst", "api/pypath.inputs.unichem.unichem_info.rst", "api/pypath.inputs.unichem.unichem_mapping.rst", "api/pypath.inputs.unichem.unichem_sources.rst", "api/pypath.inputs.uniprot.rst", "api/pypath.inputs.uniprot.Taxon.rst", "api/pypath.inputs.uniprot.UniprotQuery.rst", "api/pypath.inputs.uniprot.UniprotRecordHistory.rst", "api/pypath.inputs.uniprot.deleted_uniprot_genesymbol.rst", "api/pypath.inputs.uniprot.get_uniprot_sec.rst", "api/pypath.inputs.uniprot.idmapping_idtypes.rst", "api/pypath.inputs.uniprot.protein_datasheet.rst", "api/pypath.inputs.uniprot.query_builder.rst", "api/pypath.inputs.uniprot.swissprot_deleted.rst", "api/pypath.inputs.uniprot.trembl_deleted.rst", "api/pypath.inputs.uniprot.uniprot_data.rst", "api/pypath.inputs.uniprot.uniprot_deleted.rst", "api/pypath.inputs.uniprot.uniprot_families.rst", "api/pypath.inputs.uniprot.uniprot_history.rst", "api/pypath.inputs.uniprot.uniprot_history_recent_datasheet.rst", "api/pypath.inputs.uniprot.uniprot_keywords.rst", "api/pypath.inputs.uniprot.uniprot_locations.rst", "api/pypath.inputs.uniprot.uniprot_ncbi_taxids.rst", "api/pypath.inputs.uniprot.uniprot_ncbi_taxids_2.rst", "api/pypath.inputs.uniprot.uniprot_preprocess.rst", "api/pypath.inputs.uniprot.uniprot_query.rst", "api/pypath.inputs.uniprot.uniprot_recent_version.rst", "api/pypath.inputs.uniprot.uniprot_taxonomy.rst", "api/pypath.inputs.uniprot.uniprot_tissues.rst", "api/pypath.inputs.uniprot.uniprot_topology.rst", "api/pypath.inputs.uniprot.valid_uniprot.rst", "api/pypath.inputs.uniprot_db.rst", "api/pypath.inputs.uniprot_db.all_swissprots.rst", "api/pypath.inputs.uniprot_db.all_trembls.rst", "api/pypath.inputs.uniprot_db.all_uniprots.rst", "api/pypath.inputs.uniprot_db.get_db.rst", "api/pypath.inputs.uniprot_db.init_db.rst", "api/pypath.inputs.uniprot_db.is_swissprot.rst", "api/pypath.inputs.uniprot_db.is_trembl.rst", "api/pypath.inputs.uniprot_db.is_uniprot.rst", "api/pypath.inputs.wang.rst", "api/pypath.inputs.wang.cui_interactions.rst", "api/pypath.inputs.wang.hsn_interactions.rst", "api/pypath.inputs.wang.wang_annotations.rst", "api/pypath.inputs.wang.wang_interactions.rst", "api/pypath.inputs.wojtowicz2020.rst", "api/pypath.inputs.wojtowicz2020.wojtowicz2020_interactions.rst", "api/pypath.inputs.wojtowicz2020.wojtowicz2020_raw.rst", "api/pypath.inputs.zhong2015.rst", "api/pypath.inputs.zhong2015.zhong2015_annotations.rst", "api/pypath.internals.rst", "api/pypath.internals.annot_formats.rst", "api/pypath.internals.annot_formats.AnnotDef.rst", "api/pypath.internals.annot_formats.AnnotDefKey.rst", "api/pypath.internals.annot_formats.AnnotOp.rst", "api/pypath.internals.annot_formats.AnnotationGroup.rst", "api/pypath.internals.input_formats.rst", "api/pypath.internals.input_formats.ArrayMapping.rst", "api/pypath.internals.input_formats.BiomartMapping.rst", "api/pypath.internals.input_formats.FileMapping.rst", "api/pypath.internals.input_formats.HmdbMapping.rst", "api/pypath.internals.input_formats.MappingInput.rst", "api/pypath.internals.input_formats.NetworkInput.rst", "api/pypath.internals.input_formats.PickleMapping.rst", "api/pypath.internals.input_formats.ProMapping.rst", "api/pypath.internals.input_formats.RampMapping.rst", "api/pypath.internals.input_formats.ReadList.rst", "api/pypath.internals.input_formats.UnichemMapping.rst", "api/pypath.internals.input_formats.UniprotListMapping.rst", "api/pypath.internals.input_formats.UniprotMapping.rst", "api/pypath.internals.intera.rst", "api/pypath.internals.intera.Complex.rst", "api/pypath.internals.intera.Domain.rst", "api/pypath.internals.intera.DomainDomain.rst", "api/pypath.internals.intera.DomainMotif.rst", "api/pypath.internals.intera.Interface.rst", "api/pypath.internals.intera.Motif.rst", "api/pypath.internals.intera.Ptm.rst", "api/pypath.internals.intera.Regulation.rst", "api/pypath.internals.intera.Residue.rst", "api/pypath.internals.license.rst", "api/pypath.internals.license.License.rst", "api/pypath.internals.license.LicenseAttrib.rst", "api/pypath.internals.license.LicenseFeature.rst", "api/pypath.internals.license.LicensePurpose.rst", "api/pypath.internals.license.LicenseSharing.rst", "api/pypath.internals.maps.rst", "api/pypath.internals.refs.rst", "api/pypath.internals.refs.Reference.rst", "api/pypath.internals.refs.get_pubmed_data.rst", "api/pypath.internals.resource.rst", "api/pypath.internals.resource.AbstractResource.rst", "api/pypath.internals.resource.EnzymeSubstrateResource.rst", "api/pypath.internals.resource.EnzymeSubstrateResourceKey.rst", "api/pypath.internals.resource.NetworkDataset.rst", "api/pypath.internals.resource.NetworkResource.rst", "api/pypath.internals.resource.NetworkResourceKey.rst", "api/pypath.internals.resource.ResourceAttributes.rst", "api/pypath.legacy.rst", "api/pypath.legacy.db_categories.rst", "api/pypath.legacy.db_categories.get_categories.rst", "api/pypath.legacy.db_categories.get_category.rst", "api/pypath.log.rst", "api/pypath.resources.rst", "api/pypath.resources.controller.rst", "api/pypath.resources.controller.ResourceController.rst", "api/pypath.resources.data.rst", "api/pypath.resources.data_formats.rst", "api/pypath.resources.data_formats.activity_flow.rst", "api/pypath.resources.data_formats.enzyme_substrate.rst", "api/pypath.resources.data_formats.interaction.rst", "api/pypath.resources.data_formats.interaction_htp.rst", "api/pypath.resources.data_formats.pathway_bad.rst", "api/pypath.resources.data_formats.reaction_pc.rst", "api/pypath.resources.data_formats.transcription_deprecated.rst", "api/pypath.resources.data_formats.transcription_onebyone.rst", "api/pypath.resources.get_controller.rst", "api/pypath.resources.licenses.rst", "api/pypath.resources.licenses.Licenses.rst", "api/pypath.resources.network.rst", "api/pypath.resources.network.choose_dataset.rst", "api/pypath.resources.network.dataset_priority.rst", "api/pypath.resources.network.dorothea_expand_levels.rst", "api/pypath.resources.urls.rst", "api/pypath.share.rst", "api/pypath.share.cache.rst", "api/pypath.share.cache.cache_item.rst", "api/pypath.share.cache.cache_path.rst", "api/pypath.share.cache.default_cachedir.rst", "api/pypath.share.cache.get_cachedir.rst", "api/pypath.share.common.rst", "api/pypath.share.constants.rst", "api/pypath.share.curl.rst", "api/pypath.share.curl.Curl.rst", "api/pypath.share.curl.FileOpener.rst", "api/pypath.share.curl.RemoteFile.rst", "api/pypath.share.curl.cache_delete_off.rst", "api/pypath.share.curl.cache_delete_on.rst", "api/pypath.share.curl.cache_off.rst", "api/pypath.share.curl.cache_on.rst", "api/pypath.share.curl.cache_print_off.rst", "api/pypath.share.curl.cache_print_on.rst", "api/pypath.share.curl.debug_off.rst", "api/pypath.share.curl.debug_on.rst", "api/pypath.share.curl.dryrun_off.rst", "api/pypath.share.curl.dryrun_on.rst", "api/pypath.share.curl.is_url.rst", "api/pypath.share.curl.preserve_off.rst", "api/pypath.share.curl.preserve_on.rst", "api/pypath.share.progress.rst", "api/pypath.share.progress.Progress.rst", "api/pypath.share.session.rst", "api/pypath.share.settings.rst", "api/pypath.utils.rst", "api/pypath.utils.go.rst", "api/pypath.utils.go.GOAnnotation.rst", "api/pypath.utils.go.GOCustomAnnotation.rst", "api/pypath.utils.go.GeneOntology.rst", "api/pypath.utils.go.annotate.rst", "api/pypath.utils.go.get_db.rst", "api/pypath.utils.go.init_db.rst", "api/pypath.utils.go.load_go.rst", "api/pypath.utils.mapping.rst", "api/pypath.utils.mapping.MapReader.rst", "api/pypath.utils.mapping.Mapper.rst", "api/pypath.utils.mapping.MappingTable.rst", "api/pypath.utils.mapping.MappingTableKey.rst", "api/pypath.utils.mapping.UNIPROT_ID_TYPES.rst", "api/pypath.utils.mapping.get_mapper.rst", "api/pypath.utils.mapping.guess_type.rst", "api/pypath.utils.mapping.id_from_label.rst", "api/pypath.utils.mapping.id_from_label0.rst", "api/pypath.utils.mapping.id_types.rst", "api/pypath.utils.mapping.init.rst", "api/pypath.utils.mapping.label.rst", "api/pypath.utils.mapping.map_name.rst", "api/pypath.utils.mapping.map_name0.rst", "api/pypath.utils.mapping.map_names.rst", "api/pypath.utils.mapping.mapping_tables.rst", "api/pypath.utils.mapping.translation_df.rst", "api/pypath.utils.mapping.translation_dict.rst", "api/pypath.utils.metabo.rst", "api/pypath.utils.orthology.rst", "api/pypath.utils.orthology.EnsemblOrtholog.rst", "api/pypath.utils.orthology.EnsemblOrthology.rst", "api/pypath.utils.orthology.HomologeneOrtholog.rst", "api/pypath.utils.orthology.HomologeneOrthology.rst", "api/pypath.utils.orthology.OmaOrtholog.rst", "api/pypath.utils.orthology.OmaOrthology.rst", "api/pypath.utils.orthology.OrthologBase.rst", "api/pypath.utils.orthology.OrthologMeta.rst", "api/pypath.utils.orthology.OrthologyManager.rst", "api/pypath.utils.orthology.OrthologyTableKey.rst", "api/pypath.utils.orthology.ProteinOrthology.rst", "api/pypath.utils.orthology.Proteomes.rst", "api/pypath.utils.orthology.PtmOrthology.rst", "api/pypath.utils.orthology.SequenceContainer.rst", "api/pypath.utils.orthology.get_df.rst", "api/pypath.utils.orthology.get_dict.rst", "api/pypath.utils.orthology.get_manager.rst", "api/pypath.utils.orthology.init.rst", "api/pypath.utils.orthology.translate.rst", "api/pypath.utils.orthology.translate_df.rst", "api/pypath.utils.pdb.rst", "api/pypath.utils.pdb.Residue.rst", "api/pypath.utils.pdb.ResidueMapper.rst", "api/pypath.utils.pdb.Segment.rst", "api/pypath.utils.pdb.residue_pdb.rst", "api/pypath.utils.proteomicsdb.rst", "api/pypath.utils.proteomicsdb.ProteomicsDB.rst", "api/pypath.utils.pyreact.rst", "api/pypath.utils.pyreact.AttributeHandler.rst", "api/pypath.utils.pyreact.BioPaxReader.rst", "api/pypath.utils.pyreact.Complex.rst", "api/pypath.utils.pyreact.ComplexVariations.rst", "api/pypath.utils.pyreact.Control.rst", "api/pypath.utils.pyreact.Entity.rst", "api/pypath.utils.pyreact.EntitySet.rst", "api/pypath.utils.pyreact.Intersecting.rst", "api/pypath.utils.pyreact.Protein.rst", "api/pypath.utils.pyreact.ProteinFamily.rst", "api/pypath.utils.pyreact.PyReact.rst", "api/pypath.utils.pyreact.Reaction.rst", "api/pypath.utils.pyreact.ReactionSide.rst", "api/pypath.utils.pyreact.Reference.rst", "api/pypath.utils.reflists.rst", "api/pypath.utils.reflists.ReferenceListManager.rst", "api/pypath.utils.reflists.check.rst", "api/pypath.utils.reflists.get_manager.rst", "api/pypath.utils.reflists.get_reflist.rst", "api/pypath.utils.reflists.init.rst", "api/pypath.utils.reflists.is_not.rst", "api/pypath.utils.reflists.select.rst", "api/pypath.utils.residues.rst", "api/pypath.utils.residues.ResidueMapper.rst", "api/pypath.utils.seq.rst", "api/pypath.utils.seq.Pfam.rst", "api/pypath.utils.seq.Resource.rst", "api/pypath.utils.seq.Seq.rst", "api/pypath.utils.seq.get_isoforms.rst", "api/pypath.utils.seq.read_fasta.rst", "api/pypath.utils.seq.swissprot_seq.rst", "api/pypath.utils.taxonomy.rst", "api/pypath.utils.taxonomy.ensure_common_name.rst", "api/pypath.utils.taxonomy.ensure_ensembl_name.rst", "api/pypath.utils.taxonomy.ensure_latin_name.rst", "api/pypath.utils.taxonomy.ensure_ncbi_tax_id.rst", "api/pypath.utils.taxonomy.get_db.rst", "api/pypath.utils.taxonomy.init_db.rst", "api/pypath.utils.taxonomy.short_latin_names.rst", "api/pypath.utils.taxonomy.shorten_latin_name.rst", "api/pypath.utils.taxonomy.taxid_from_common_name.rst", "api/pypath.utils.taxonomy.taxid_from_dbptm_taxon_name.rst", "api/pypath.utils.taxonomy.taxid_from_ensembl_name.rst", "api/pypath.utils.taxonomy.taxid_from_latin_name.rst", "api/pypath.utils.taxonomy.taxid_from_nonstandard.rst", "api/pypath.utils.taxonomy.uniprot_taxid.rst", "api/pypath.utils.unichem.rst", "api/pypath.utils.unichem.Unichem.rst", "api/pypath.visual.rst", "api/pypath.visual.drawing.rst", "api/pypath.visual.drawing.InterSet.rst", "api/pypath.visual.drawing.Plot.rst", "api/pypath.visual.igraph_drawing.rst", "api/pypath.visual.igraph_drawing.AbstractCairoGraphDrawer.rst", "api/pypath.visual.igraph_drawing.ArrowEdgeDrawer.rst", "api/pypath.visual.igraph_drawing.DefaultGraphDrawerFFsupport.rst", "api/pypath.visual.igraph_drawing.DefaultVertexDrawer.rst", "api/pypath.visual.igraph_drawing.TextDrawer.rst", "api/pypath.visual.igraph_drawing.edge.rst", "api/pypath.visual.igraph_drawing.edge.AbstractEdgeDrawer.rst", "api/pypath.visual.igraph_drawing.edge.AlphaVaryingEdgeDrawer.rst", "api/pypath.visual.igraph_drawing.edge.ArrowEdgeDrawer.rst", "api/pypath.visual.igraph_drawing.edge.DarkToLightEdgeDrawer.rst", "api/pypath.visual.igraph_drawing.edge.LightToDarkEdgeDrawer.rst", "api/pypath.visual.igraph_drawing.edge.TaperedEdgeDrawer.rst", "api/pypath.visual.igraph_drawing.vertex.rst", "api/pypath.visual.igraph_drawing.vertex.AbstractCairoDrawer.rst", "api/pypath.visual.igraph_drawing.vertex.AbstractCairoVertexDrawer.rst", "api/pypath.visual.igraph_drawing.vertex.AbstractDrawer.rst", "api/pypath.visual.igraph_drawing.vertex.AbstractVertexDrawer.rst", "api/pypath.visual.igraph_drawing.vertex.DefaultVertexDrawer.rst", "contents.rst", "index.rst", "notebooks/manual.ipynb", "reference.rst", "releasehistory.rst", "webservice.rst"], "titles": ["pypath", "pypath.core", "pypath.core.attrs", "pypath.core.attrs.AttributeHandler", "pypath.core.common", "pypath.core.common.filter_network_df", "pypath.core.complex", "pypath.core.complex.AbstractComplexResource", "pypath.core.complex.CellPhoneDB", "pypath.core.complex.Cellchatdb", "pypath.core.complex.Cellinker", "pypath.core.complex.Compleat", "pypath.core.complex.ComplexAggregator", "pypath.core.complex.ComplexPortal", "pypath.core.complex.Corum", "pypath.core.complex.GuideToPharmacology", "pypath.core.complex.Havugimana", "pypath.core.complex.Hpmr", "pypath.core.complex.Humap", "pypath.core.complex.Humap2", "pypath.core.complex.Icellnet", "pypath.core.complex.Kegg", "pypath.core.complex.Pdb", "pypath.core.complex.Signor", "pypath.core.complex.Spike", "pypath.core.complex.all_complexes", "pypath.core.complex.get_db", "pypath.core.complex.init_db", "pypath.core.entity", "pypath.core.entity.Entity", "pypath.core.entity.EntityKey", "pypath.core.entity.EntityList", "pypath.core.enz_sub", "pypath.core.enz_sub.EnzymeSubstrateAggregator", "pypath.core.enz_sub.EnzymeSubstrateOrthologyProcessor", "pypath.core.enz_sub.EnzymeSubstrateProcessor", "pypath.core.enz_sub.get_db", "pypath.core.enz_sub.init_db", "pypath.core.evidence", "pypath.core.evidence.Evidence", "pypath.core.evidence.Evidences", "pypath.core.interaction", "pypath.core.interaction.Interaction", "pypath.core.interaction.InteractionDataFrameRecord", "pypath.core.interaction.InteractionKey", "pypath.core.intercell_annot", "pypath.core.intercell_annot.excludes", "pypath.core.network", "pypath.core.network.Network", "pypath.core.network.NetworkEntityCollection", "pypath.core.network.NetworkStatsRecord", "pypath.core.network.get_db", "pypath.core.network.init_db", "pypath.data", "pypath.disclaimer", "pypath.info", "pypath.inputs", "pypath.inputs.abs", "pypath.inputs.abs.abs_interactions", "pypath.inputs.acsn", "pypath.inputs.acsn.acsn_interactions", "pypath.inputs.acsn.acsn_interactions_sif", "pypath.inputs.adhesome", "pypath.inputs.adhesome.adhesome_annotations", "pypath.inputs.adhesome.adhesome_interactions", "pypath.inputs.adrecs", "pypath.inputs.adrecs.AdrecsAdr", "pypath.inputs.adrecs.AdrecsChildParent", "pypath.inputs.adrecs.AdrecsDrug", "pypath.inputs.adrecs.AdrecsDrugAdr", "pypath.inputs.adrecs.AdrecsTerm", "pypath.inputs.adrecs.adrecs_adr_ontology", "pypath.inputs.adrecs.adrecs_drug_adr", "pypath.inputs.adrecs.adrecs_drug_identifiers", "pypath.inputs.adrecs.adrecs_hierarchy", "pypath.inputs.almen2009", "pypath.inputs.almen2009.almen2009_annotations", "pypath.inputs.baccin2019", "pypath.inputs.baccin2019.baccin2019_annotations", "pypath.inputs.baccin2019.baccin2019_interactions", "pypath.inputs.biogps", "pypath.inputs.biogps.BiogpsDataset", "pypath.inputs.biogps.biogps_annotations", "pypath.inputs.biogps.biogps_datasets", "pypath.inputs.biogps.biogps_download", "pypath.inputs.biogps.biogps_download_all", "pypath.inputs.biogrid", "pypath.inputs.biogrid.biogrid_all_interactions", "pypath.inputs.biogrid.biogrid_interactions", "pypath.inputs.biomart", "pypath.inputs.biomart.biomart_homology", "pypath.inputs.biomart.biomart_microarray", "pypath.inputs.biomart.biomart_microarray_types", "pypath.inputs.biomart.biomart_microarrays", "pypath.inputs.biomart.biomart_query", "pypath.inputs.biomodels", "pypath.inputs.biomodels.download_single_model", "pypath.inputs.biomodels.get_all_models", "pypath.inputs.biomodels.get_biomodels", "pypath.inputs.biomodels.get_biomodels_req", "pypath.inputs.biomodels.get_single_model", "pypath.inputs.ca1", "pypath.inputs.ca1.ca1_interactions", "pypath.inputs.cancercellmap", "pypath.inputs.cancercellmap.ccmap_interactions", "pypath.inputs.cancerdrugsdb", "pypath.inputs.cancerdrugsdb.cancerdrugsdb_annotations", "pypath.inputs.cancerdrugsdb.cancerdrugsdb_download", "pypath.inputs.cancerdrugsdb.cancerdrugsdb_interactions", "pypath.inputs.cancersea", "pypath.inputs.cancersea.cancersea_annotations", "pypath.inputs.cell", "pypath.inputs.cell.cell_supplementary", "pypath.inputs.cellcall", "pypath.inputs.cellcall.cellcall_annotations", "pypath.inputs.cellcall.cellcall_download", "pypath.inputs.cellcall.cellcall_download_all", "pypath.inputs.cellcall.cellcall_interactions", "pypath.inputs.cellcellinteractions", "pypath.inputs.cellcellinteractions.cellcellinteractions_annotations", "pypath.inputs.cellchatdb", "pypath.inputs.cellchatdb.cellchatdb_annotations", "pypath.inputs.cellchatdb.cellchatdb_cofactors", "pypath.inputs.cellchatdb.cellchatdb_complexes", "pypath.inputs.cellchatdb.cellchatdb_download", "pypath.inputs.cellchatdb.cellchatdb_interactions", "pypath.inputs.cellinker", "pypath.inputs.cellinker.CellinkerInteraction", "pypath.inputs.cellinker.cellinker_annotations", "pypath.inputs.cellinker.cellinker_complex_annotations", "pypath.inputs.cellinker.cellinker_complexes", "pypath.inputs.cellinker.cellinker_complexes_raw", "pypath.inputs.cellinker.cellinker_lr_interactions", "pypath.inputs.cellinker.cellinker_lr_interactions_raw", "pypath.inputs.cellinker.cellinker_protein_annotations", "pypath.inputs.cellinker.cellinker_smol_interactions", "pypath.inputs.cellinker.cellinker_smol_interactions_raw", "pypath.inputs.cellinker.components_to_complex", "pypath.inputs.cellphonedb", "pypath.inputs.cellphonedb.CellPhoneDBAnnotation", "pypath.inputs.cellphonedb.cellphonedb_complex_annotations", "pypath.inputs.cellphonedb.cellphonedb_complexes", "pypath.inputs.cellphonedb.cellphonedb_interactions", "pypath.inputs.cellphonedb.cellphonedb_ligands_receptors", "pypath.inputs.cellphonedb.cellphonedb_protein_annotations", "pypath.inputs.celltalkdb", "pypath.inputs.celltalkdb.celltalkdb_annotations", "pypath.inputs.celltalkdb.celltalkdb_download", "pypath.inputs.celltalkdb.celltalkdb_interactions", "pypath.inputs.celltypist", "pypath.inputs.celltypist.celltypist_annotations", "pypath.inputs.chembl", "pypath.inputs.chembl.chembl_activities", "pypath.inputs.chembl.chembl_assays", "pypath.inputs.chembl.chembl_documents", "pypath.inputs.chembl.chembl_drug_indications", "pypath.inputs.chembl.chembl_mechanisms", "pypath.inputs.chembl.chembl_molecules", "pypath.inputs.chembl.chembl_targets", "pypath.inputs.clinvar", "pypath.inputs.clinvar.clinvar_citations", "pypath.inputs.clinvar.clinvar_raw", "pypath.inputs.collectri", "pypath.inputs.collectri.collectri_interactions", "pypath.inputs.collectri.collectri_raw", "pypath.inputs.common", "pypath.inputs.common.csv_sep_change", "pypath.inputs.common.glom_fields", "pypath.inputs.common.json_extract", "pypath.inputs.common.json_read", "pypath.inputs.common.read_table", "pypath.inputs.common.read_xls", "pypath.inputs.compath", "pypath.inputs.compath.compath_mappings", "pypath.inputs.compleat", "pypath.inputs.compleat.compleat_complexes", "pypath.inputs.compleat.compleat_raw", "pypath.inputs.complexportal", "pypath.inputs.complexportal.complexportal_complexes", "pypath.inputs.comppi", "pypath.inputs.comppi.comppi_interaction_locations", "pypath.inputs.comppi.comppi_locations", "pypath.inputs.connectomedb", "pypath.inputs.connectomedb.connectomedb_annotations", "pypath.inputs.connectomedb.connectomedb_interactions", "pypath.inputs.corum", "pypath.inputs.corum.corum_complexes", "pypath.inputs.cosmic", "pypath.inputs.cosmic.cancer_gene_census_annotations", "pypath.inputs.cpad", "pypath.inputs.cpad.cpad_annotations", "pypath.inputs.cpad.cpad_pathway_cancer", "pypath.inputs.cpad.get_cpad", "pypath.inputs.cpdb", "pypath.inputs.cpdb.cpdb_interactions", "pypath.inputs.cpdb.cpdb_interactions_ltp", "pypath.inputs.credentials", "pypath.inputs.credentials.credentials", "pypath.inputs.csa", "pypath.inputs.csa.get_csa", "pypath.inputs.cspa", "pypath.inputs.cspa.cspa_annotations", "pypath.inputs.cspa.cspa_cell_type_annotations", "pypath.inputs.cspa.cspa_cell_types", "pypath.inputs.ctdbase", "pypath.inputs.ctdbase.ctdbase_relations", "pypath.inputs.ctdbase.ctdbase_vocabulary", "pypath.inputs.cytosig", "pypath.inputs.cytosig.cytosig_annotations", "pypath.inputs.cytosig.cytosig_df", "pypath.inputs.dbptm", "pypath.inputs.dbptm.dbptm_enzyme_substrate", "pypath.inputs.dbptm.dbptm_enzyme_substrate_old", "pypath.inputs.dbptm.dbptm_interactions", "pypath.inputs.ddinter", "pypath.inputs.ddinter.ddinter_drug_interactions", "pypath.inputs.ddinter.ddinter_identifiers", "pypath.inputs.ddinter.ddinter_interactions", "pypath.inputs.ddinter.ddinter_mappings", "pypath.inputs.ddinter.ddinter_n_drugs", "pypath.inputs.deathdomain", "pypath.inputs.deathdomain.deathdomain_interactions", "pypath.inputs.deathdomain.deathdomain_interactions_rescued", "pypath.inputs.depod", "pypath.inputs.depod.depod_enzyme_substrate", "pypath.inputs.depod.depod_interactions", "pypath.inputs.dgidb", "pypath.inputs.dgidb.dgidb_annotations", "pypath.inputs.dgidb.dgidb_interactions", "pypath.inputs.dgidb.get_dgidb_old", "pypath.inputs.dip", "pypath.inputs.dip.dip_interactions", "pypath.inputs.dip.dip_login", "pypath.inputs.diseases", "pypath.inputs.diseases.diseases_general", "pypath.inputs.diseases.experiments_filtered", "pypath.inputs.diseases.experiments_full", "pypath.inputs.diseases.knowledge_filtered", "pypath.inputs.diseases.knowledge_full", "pypath.inputs.diseases.textmining_filtered", "pypath.inputs.diseases.textmining_full", "pypath.inputs.domino", "pypath.inputs.domino.domino_ddi", "pypath.inputs.domino.domino_enzsub", "pypath.inputs.domino.domino_interactions", "pypath.inputs.domino.get_domino", "pypath.inputs.dorothea", "pypath.inputs.dorothea.DorotheaInteraction", "pypath.inputs.dorothea.dorothea_full_raw", "pypath.inputs.dorothea.dorothea_interactions", "pypath.inputs.dorothea.dorothea_interactions_old", "pypath.inputs.dorothea.dorothea_old_csv", "pypath.inputs.dorothea.dorothea_rda_raw", "pypath.inputs.dorothea.get_dorothea_old", "pypath.inputs.dorothea.get_tfregulons", "pypath.inputs.dorothea.tfregulons_interactions", "pypath.inputs.dorothea.tfregulons_interactions_old", "pypath.inputs.drugbank", "pypath.inputs.drugbank.DrugbankFull", "pypath.inputs.drugbank.drugbank_annotations", "pypath.inputs.drugbank.drugbank_drugs", "pypath.inputs.drugbank.drugbank_interactions", "pypath.inputs.drugbank.drugbank_mapping", "pypath.inputs.drugbank.drugbank_raw_interactions", "pypath.inputs.drugcentral", "pypath.inputs.drugcentral.drugcentral_drugs", "pypath.inputs.drugcentral.drugcentral_interactions", "pypath.inputs.drugcentral.drugcentral_mapping", "pypath.inputs.ebi", "pypath.inputs.ebi.ebi_rest", "pypath.inputs.elm", "pypath.inputs.elm.elm_classes", "pypath.inputs.elm.elm_domains", "pypath.inputs.elm.elm_instances", "pypath.inputs.elm.elm_interactions", "pypath.inputs.embopress", "pypath.inputs.embopress.embopress_supplementary", "pypath.inputs.embrace", "pypath.inputs.embrace.embrace_annotations", "pypath.inputs.embrace.embrace_interactions", "pypath.inputs.embrace.embrace_raw", "pypath.inputs.embrace.embrace_translated", "pypath.inputs.encode", "pypath.inputs.encode.encode_tf_mirna_interactions", "pypath.inputs.ensembl", "pypath.inputs.ensembl.ensembl_organisms", "pypath.inputs.eutils", "pypath.inputs.eutils.esummary", "pypath.inputs.exocarta", "pypath.inputs.exocarta.get_exocarta", "pypath.inputs.exocarta.get_vesiclepedia", "pypath.inputs.expasy", "pypath.inputs.expasy.expasy_enzyme_classes", "pypath.inputs.expasy.expasy_enzymes", "pypath.inputs.genecards", "pypath.inputs.genecards.genecards_datasheet", "pypath.inputs.genecards.genecards_soup", "pypath.inputs.genecards.genecards_summaries", "pypath.inputs.get_method", "pypath.inputs.go", "pypath.inputs.go.get_go_desc", "pypath.inputs.go.get_go_quick", "pypath.inputs.go.get_goslim", "pypath.inputs.go.go_ancestors", "pypath.inputs.go.go_ancestors_goose", "pypath.inputs.go.go_ancestors_quickgo", "pypath.inputs.go.go_annotations", "pypath.inputs.go.go_annotations_all", "pypath.inputs.go.go_annotations_goa", "pypath.inputs.go.go_annotations_goose", "pypath.inputs.go.go_annotations_quickgo", "pypath.inputs.go.go_annotations_solr", "pypath.inputs.go.go_annotations_uniprot", "pypath.inputs.go.go_descendants", "pypath.inputs.go.go_descendants_goose", "pypath.inputs.go.go_descendants_quickgo", "pypath.inputs.go.go_descendants_to_ancestors", "pypath.inputs.go.go_terms", "pypath.inputs.go.go_terms_goose", "pypath.inputs.go.go_terms_quickgo", "pypath.inputs.go.go_terms_solr", "pypath.inputs.gpcrdb", "pypath.inputs.gpcrdb.gpcrdb_annotations", "pypath.inputs.graphviz", "pypath.inputs.graphviz.graphviz_attrs", "pypath.inputs.guide2pharma", "pypath.inputs.guide2pharma.guide2pharma_complexes", "pypath.inputs.guide2pharma.guide2pharma_download", "pypath.inputs.guide2pharma.guide2pharma_interactions", "pypath.inputs.gutmgene", "pypath.inputs.gutmgene.GutmgeneAnnotation", "pypath.inputs.gutmgene.GutmgeneRaw", "pypath.inputs.gutmgene.gutmgene_annotations", "pypath.inputs.gutmgene.gutmgene_raw", "pypath.inputs.havugimana", "pypath.inputs.havugimana.get_havugimana", "pypath.inputs.havugimana.havugimana_complexes", "pypath.inputs.hgnc", "pypath.inputs.hgnc.hgnc_genegroups", "pypath.inputs.hippie", "pypath.inputs.hippie.hippie_interactions", "pypath.inputs.hmdb", "pypath.inputs.hmdb.common", "pypath.inputs.hmdb.common.iter", "pypath.inputs.hmdb.common.mapping", "pypath.inputs.hmdb.common.raw", "pypath.inputs.hmdb.common.table", "pypath.inputs.hmdb.metabolites", "pypath.inputs.hmdb.metabolites.iter", "pypath.inputs.hmdb.metabolites.mapping", "pypath.inputs.hmdb.metabolites.raw", "pypath.inputs.hmdb.metabolites.table", "pypath.inputs.hmdb.proteins", "pypath.inputs.hmdb.proteins.iter", "pypath.inputs.hmdb.proteins.mapping", "pypath.inputs.hmdb.proteins.raw", "pypath.inputs.hmdb.proteins.table", "pypath.inputs.hmdb.schema", "pypath.inputs.hmdb.schema.common", "pypath.inputs.hmdb.schema.common.Field", "pypath.inputs.hmdb.schema.metabolites", "pypath.inputs.hmdb.schema.proteins", "pypath.inputs.hmdb.structures", "pypath.inputs.hmdb.structures.sdf", "pypath.inputs.hmdb.visual", "pypath.inputs.hmdb.visual.show_structure", "pypath.inputs.hmdb.visual.structure_svg", "pypath.inputs.hmdb.xml", "pypath.inputs.hmdb.xml.hmdb_xml", "pypath.inputs.homologene", "pypath.inputs.homologene.get_homologene", "pypath.inputs.homologene.homologene_dict", "pypath.inputs.homologene.homologene_uniprot_dict", "pypath.inputs.hpmr", "pypath.inputs.hpmr.HpmrInteraction", "pypath.inputs.hpmr.get_hpmr", "pypath.inputs.hpmr.hpmr_annotations", "pypath.inputs.hpmr.hpmr_complexes", "pypath.inputs.hpmr.hpmr_interactions", "pypath.inputs.hpo", "pypath.inputs.hpo.hpo_annotations", "pypath.inputs.hpo.hpo_diseases", "pypath.inputs.hpo.hpo_ontology", "pypath.inputs.hpo.hpo_terms", "pypath.inputs.hprd", "pypath.inputs.hprd.get_hprd", "pypath.inputs.hprd.hprd_enzyme_substrate", "pypath.inputs.hprd.hprd_interactions", "pypath.inputs.hprd.hprd_interactions_htp", "pypath.inputs.htri", "pypath.inputs.htri.htri_interactions", "pypath.inputs.humancellmap", "pypath.inputs.humancellmap.humancellmap_annotations", "pypath.inputs.humap", "pypath.inputs.humap.humap2_complexes", "pypath.inputs.humap.humap_complexes", "pypath.inputs.humsavar", "pypath.inputs.humsavar.uniprot_variants", "pypath.inputs.huri", "pypath.inputs.huri.hi_i_interactions", "pypath.inputs.huri.hi_ii_interactions", "pypath.inputs.huri.hi_iii_old", "pypath.inputs.huri.hi_union_interactions", "pypath.inputs.huri.huri_interactions", "pypath.inputs.huri.lit_bm_13_interactions", "pypath.inputs.huri.lit_bm_17_interactions", "pypath.inputs.huri.lit_bm_interactions", "pypath.inputs.huri.rolland_hi_ii_14", "pypath.inputs.huri.vidal_hi_iii_old", "pypath.inputs.huri.yang2016_interactions", "pypath.inputs.huri.yu2011_interactions", "pypath.inputs.i3d", "pypath.inputs.i3d.get_i3d", "pypath.inputs.icellnet", "pypath.inputs.icellnet.IcellnetRecord", "pypath.inputs.icellnet.icellnet_annotations", "pypath.inputs.icellnet.icellnet_complexes", "pypath.inputs.icellnet.icellnet_interactions", "pypath.inputs.ielm", "pypath.inputs.ielm.get_ielm", "pypath.inputs.ielm.get_ielm_huge", "pypath.inputs.imweb", "pypath.inputs.imweb.get_imweb", "pypath.inputs.imweb.get_imweb_req", "pypath.inputs.innatedb", "pypath.inputs.innatedb.innatedb_interactions", "pypath.inputs.instruct", "pypath.inputs.instruct.get_instruct", "pypath.inputs.instruct.get_instruct_offsets", "pypath.inputs.intact", "pypath.inputs.intact.intact_interactions", "pypath.inputs.integrins", "pypath.inputs.integrins.get_integrins", "pypath.inputs.interpro", "pypath.inputs.interpro.interpro2go_annotations", "pypath.inputs.interpro.interpro_annotations", "pypath.inputs.interpro.interpro_entries", "pypath.inputs.interpro.interpro_xrefs", "pypath.inputs.intogen", "pypath.inputs.intogen.intogen_annotations", "pypath.inputs.ipi", "pypath.inputs.ipi.ipi_uniprot", "pypath.inputs.iptmnet", "pypath.inputs.iptmnet.IptmnetInteraction", "pypath.inputs.iptmnet.iptmnet_interactions", "pypath.inputs.italk", "pypath.inputs.italk.italk_annotations", "pypath.inputs.italk.italk_interactions", "pypath.inputs.italk.italk_raw", "pypath.inputs.kea", "pypath.inputs.kea.kea_enzyme_substrate", "pypath.inputs.kea.kea_interactions", "pypath.inputs.kegg", "pypath.inputs.kegg.KeggPathway", "pypath.inputs.kegg.kegg_dbget", "pypath.inputs.kegg.kegg_interactions", "pypath.inputs.kegg.kegg_medicus", "pypath.inputs.kegg.kegg_medicus_complexes", "pypath.inputs.kegg.kegg_medicus_interactions", "pypath.inputs.kegg.kegg_pathway_annotations", "pypath.inputs.kegg.kegg_pathway_annotations_pathwaycommons", "pypath.inputs.kegg.kegg_pathways", "pypath.inputs.kegg_api", "pypath.inputs.kegg_api.disease_to_drug", "pypath.inputs.kegg_api.disease_to_gene", "pypath.inputs.kegg_api.disease_to_pathway", "pypath.inputs.kegg_api.drug_to_disease", "pypath.inputs.kegg_api.drug_to_drug", "pypath.inputs.kegg_api.drug_to_gene", "pypath.inputs.kegg_api.drug_to_pathway", "pypath.inputs.kegg_api.gene_to_disease", "pypath.inputs.kegg_api.gene_to_drug", "pypath.inputs.kegg_api.gene_to_pathway", "pypath.inputs.kegg_api.kegg_drug_to_chebi", "pypath.inputs.kegg_api.kegg_gene_to_ncbi_geneid", "pypath.inputs.kegg_api.kegg_gene_to_uniprot", "pypath.inputs.kegg_api.pathway_to_disease", "pypath.inputs.kegg_api.pathway_to_drug", "pypath.inputs.kegg_api.pathway_to_gene", "pypath.inputs.kinasedotcom", "pypath.inputs.kinasedotcom.kinasedotcom_annotations", "pypath.inputs.kirouac2010", "pypath.inputs.kirouac2010.kirouac2010_interactions", "pypath.inputs.lambert2018", "pypath.inputs.lambert2018.lambert2018_annotations", "pypath.inputs.lambert2018.lambert2018_s1_raw", "pypath.inputs.laudanna", "pypath.inputs.laudanna.laudanna_directions", "pypath.inputs.laudanna.laudanna_effects", "pypath.inputs.li2012", "pypath.inputs.li2012.get_li2012", "pypath.inputs.li2012.li2012_dmi", "pypath.inputs.li2012.li2012_enzyme_substrate", "pypath.inputs.li2012.li2012_interactions", "pypath.inputs.lincs", "pypath.inputs.lincs.lincs_compounds", "pypath.inputs.lmpid", "pypath.inputs.lmpid.lmpid_dmi", "pypath.inputs.lmpid.lmpid_interactions", "pypath.inputs.lmpid.load_lmpid", "pypath.inputs.lncdisease", "pypath.inputs.lncdisease.lncdisease_interactions", "pypath.inputs.lncrnadb", "pypath.inputs.lncrnadb.lncrnadb_interactions", "pypath.inputs.locate", "pypath.inputs.locate.locate_localizations", "pypath.inputs.lrdb", "pypath.inputs.lrdb.LrdbAnnotation", "pypath.inputs.lrdb.lrdb_annotations", "pypath.inputs.lrdb.lrdb_interactions", "pypath.inputs.macrophage", "pypath.inputs.macrophage.macrophage_interactions", "pypath.inputs.main", "pypath.inputs.matrisome", "pypath.inputs.matrisome.matrisome_annotations", "pypath.inputs.matrixdb", "pypath.inputs.matrixdb.matrixdb_annotations", "pypath.inputs.matrixdb.matrixdb_ecm_proteins", "pypath.inputs.matrixdb.matrixdb_interactions", "pypath.inputs.matrixdb.matrixdb_membrane_proteins", "pypath.inputs.matrixdb.matrixdb_secreted_proteins", "pypath.inputs.mcam", "pypath.inputs.mcam.mcam_cell_adhesion_molecules", "pypath.inputs.membranome", "pypath.inputs.membranome.membranome_annotations", "pypath.inputs.mimp", "pypath.inputs.mimp.get_kinase_class", "pypath.inputs.mimp.mimp_enzyme_substrate", "pypath.inputs.mimp.mimp_interactions", "pypath.inputs.mir2disease", "pypath.inputs.mir2disease.mir2disease_interactions", "pypath.inputs.mirbase", "pypath.inputs.mirbase.get_mirbase_aliases", "pypath.inputs.mirbase.mirbase_ids", "pypath.inputs.mirbase.mirbase_mature", "pypath.inputs.mirbase.mirbase_mature_all", "pypath.inputs.mirbase.mirbase_precursor", "pypath.inputs.mirbase.mirbase_precursor_all", "pypath.inputs.mirbase.mirbase_precursor_to_mature", "pypath.inputs.mirdeathdb", "pypath.inputs.mirdeathdb.mirdeathdb_interactions", "pypath.inputs.mirecords", "pypath.inputs.mirecords.mirecords_interactions", "pypath.inputs.mirtarbase", "pypath.inputs.mirtarbase.mirtarbase_interactions", "pypath.inputs.mitab", "pypath.inputs.mitab.mitab_field_list", "pypath.inputs.mitab.mitab_field_uniprot", "pypath.inputs.mppi", "pypath.inputs.mppi.mppi_interactions", "pypath.inputs.msigdb", "pypath.inputs.msigdb.msigdb_annotations", "pypath.inputs.msigdb.msigdb_download", "pypath.inputs.msigdb.msigdb_download_collections", "pypath.inputs.ncrdeathdb", "pypath.inputs.ncrdeathdb.ncrdeathdb_interactions", "pypath.inputs.negatome", "pypath.inputs.negatome.negatome_interactions", "pypath.inputs.netbiol", "pypath.inputs.netbiol.arn_interactions", "pypath.inputs.netbiol.nrf2ome_interactions", "pypath.inputs.netpath", "pypath.inputs.netpath.netpath_interactions", "pypath.inputs.netpath.netpath_names", "pypath.inputs.netpath.netpath_pathway_annotations", "pypath.inputs.offsides", "pypath.inputs.offsides.offsides_side_effects", "pypath.inputs.oma", "pypath.inputs.oma.oma_orthologs", "pypath.inputs.oma.oma_table", "pypath.inputs.ontology", "pypath.inputs.ontology.listof_ontologies", "pypath.inputs.ontology.ontology", "pypath.inputs.opentargets", "pypath.inputs.opentargets.opentargets_adverse_reactions", "pypath.inputs.opentargets.opentargets_baseline_expression", "pypath.inputs.opentargets.opentargets_direct_score", "pypath.inputs.opentargets.opentargets_general", "pypath.inputs.opentargets.opentargets_indirect_score", "pypath.inputs.opm", "pypath.inputs.opm.opm_annotations", "pypath.inputs.oreganno", "pypath.inputs.oreganno.oreganno_interactions", "pypath.inputs.oreganno.oreganno_raw", "pypath.inputs.panglaodb", "pypath.inputs.panglaodb.panglaodb_annotations", "pypath.inputs.panglaodb.panglaodb_raw", "pypath.inputs.pathophenodb", "pypath.inputs.pathophenodb.DiseasePathogen", "pypath.inputs.pathophenodb.disease_pathogen_interactions", "pypath.inputs.pathwaycommons", "pypath.inputs.pathwaycommons.PathwayCommonsInteraction", "pypath.inputs.pathwaycommons.PathwayCommonsResource", "pypath.inputs.pathwaycommons.pathwaycommons_bind_interactions", "pypath.inputs.pathwaycommons.pathwaycommons_biogrid_interactions", "pypath.inputs.pathwaycommons.pathwaycommons_corum_interactions", "pypath.inputs.pathwaycommons.pathwaycommons_dip_interactions", "pypath.inputs.pathwaycommons.pathwaycommons_hprd_interactions", "pypath.inputs.pathwaycommons.pathwaycommons_inoh_interactions", "pypath.inputs.pathwaycommons.pathwaycommons_intact_interactions", "pypath.inputs.pathwaycommons.pathwaycommons_interactions", "pypath.inputs.pathwaycommons.pathwaycommons_kegg_interactions", "pypath.inputs.pathwaycommons.pathwaycommons_netpath_interactions", "pypath.inputs.pathwaycommons.pathwaycommons_panther_interactions", "pypath.inputs.pathwaycommons.pathwaycommons_phosphosite_interactions", "pypath.inputs.pathwaycommons.pathwaycommons_reactome_interactions", "pypath.inputs.pathwaycommons.pathwaycommons_wikipathways_interactions", "pypath.inputs.pazar", "pypath.inputs.pazar.pazar_interactions", "pypath.inputs.pdb", "pypath.inputs.pdb.pdb_chains", "pypath.inputs.pdb.pdb_complexes", "pypath.inputs.pdb.pdb_uniprot", "pypath.inputs.pdzbase", "pypath.inputs.pdzbase.pdzbase_interactions", "pypath.inputs.pepcyber", "pypath.inputs.pepcyber.pepcyber_details", "pypath.inputs.pepcyber.pepcyber_interactions", "pypath.inputs.pfam", "pypath.inputs.pfam.pfam_names", "pypath.inputs.pfam.pfam_pdb", "pypath.inputs.pfam.pfam_regions", "pypath.inputs.pfam.pfam_uniprot", "pypath.inputs.pharos", "pypath.inputs.pharos.pharos_diseases", "pypath.inputs.pharos.pharos_expression", "pypath.inputs.pharos.pharos_general", "pypath.inputs.pharos.pharos_gtex", "pypath.inputs.pharos.pharos_ligands", "pypath.inputs.pharos.pharos_orthologs", "pypath.inputs.pharos.pharos_targets", "pypath.inputs.pharos.pharos_xrefs", "pypath.inputs.phobius", "pypath.inputs.phobius.phobius_annotations", "pypath.inputs.phosphatome", "pypath.inputs.phosphatome.phosphatome_annotations", "pypath.inputs.phosphoelm", "pypath.inputs.phosphoelm.phosphoelm_enzyme_substrate", "pypath.inputs.phosphoelm.phosphoelm_interactions", "pypath.inputs.phosphoelm.phosphoelm_kinases", "pypath.inputs.phosphonetworks", "pypath.inputs.phosphonetworks.phosphonetworks_enzyme_substrate", "pypath.inputs.phosphonetworks.phosphonetworks_interactions", "pypath.inputs.phosphopoint", "pypath.inputs.phosphopoint.phosphopoint_directions", "pypath.inputs.phosphopoint.phosphopoint_interactions", "pypath.inputs.phosphosite", "pypath.inputs.phosphosite.phosphosite_directions", "pypath.inputs.phosphosite.phosphosite_enzyme_substrate", "pypath.inputs.phosphosite.phosphosite_interactions", "pypath.inputs.phosphosite.phosphosite_interactions_all", "pypath.inputs.phosphosite.phosphosite_interactions_curated", "pypath.inputs.phosphosite.phosphosite_interactions_new", "pypath.inputs.phosphosite.phosphosite_interactions_noref", "pypath.inputs.phosphosite.phosphosite_ptm_orthology", "pypath.inputs.phosphosite.phosphosite_ptms", "pypath.inputs.phosphosite.phosphosite_regsites", "pypath.inputs.phosphosite.phosphosite_regsites_one_organism", "pypath.inputs.phosphosite.regsites_tab", "pypath.inputs.pisa", "pypath.inputs.pisa.PisaBond", "pypath.inputs.pisa.pisa_bonds", "pypath.inputs.pisa.pisa_interfaces", "pypath.inputs.pro", "pypath.inputs.pro.get_pro", "pypath.inputs.pro.pro_mapping", "pypath.inputs.progeny", "pypath.inputs.progeny.progeny_annotations", "pypath.inputs.progeny.progeny_raw", "pypath.inputs.proteinatlas", "pypath.inputs.proteinatlas.get_proteinatlas", "pypath.inputs.proteinatlas.proteinatlas_annotations", "pypath.inputs.proteinatlas.proteinatlas_secretome_annotations", "pypath.inputs.proteinatlas.proteinatlas_subcellular_annotations", "pypath.inputs.proteins", "pypath.inputs.proteins.variants", "pypath.inputs.protmapper", "pypath.inputs.protmapper.get_protmapper", "pypath.inputs.protmapper.protmapper_enzyme_substrate", "pypath.inputs.protmapper.protmapper_interactions", "pypath.inputs.pubchem", "pypath.inputs.pubchem.pubchem_mapping", "pypath.inputs.pubmed", "pypath.inputs.pubmed.get_pmid", "pypath.inputs.pubmed.get_pubmeds", "pypath.inputs.pubmed.only_pmids", "pypath.inputs.pubmed.open_pubmed", "pypath.inputs.pubmed.pmids_dict", "pypath.inputs.pubmed.pmids_list", "pypath.inputs.ramilowski2015", "pypath.inputs.ramilowski2015.ramilowski_interactions", "pypath.inputs.ramilowski2015.ramilowski_locations", "pypath.inputs.ramp", "pypath.inputs.ramp.ramp_id_types", "pypath.inputs.ramp.ramp_id_types_2", "pypath.inputs.ramp.ramp_list_tables", "pypath.inputs.ramp.ramp_mapping", "pypath.inputs.ramp.ramp_raw", "pypath.inputs.ramp.ramp_show_tables", "pypath.inputs.rdata", "pypath.inputs.reaction", "pypath.inputs.reaction.acsn_biopax", "pypath.inputs.reaction.acsn_interactions_2", "pypath.inputs.reaction.get_acsn_effects", "pypath.inputs.reaction.get_controls", "pypath.inputs.reaction.get_interactions", "pypath.inputs.reaction.get_reactions", "pypath.inputs.reaction.get_soup", "pypath.inputs.reaction.panther_biopax", "pypath.inputs.reaction.panther_interactions", "pypath.inputs.reaction.pid_biopax", "pypath.inputs.reaction.pid_interactions", "pypath.inputs.reaction.process_complex", "pypath.inputs.reaction.process_controls", "pypath.inputs.reaction.process_reactions", "pypath.inputs.reaction.reactions_biopax", "pypath.inputs.reaction.reactome_biopax", "pypath.inputs.reaction.reactome_bs", "pypath.inputs.reaction.reactome_interactions", "pypath.inputs.reaction.reactome_sbml", "pypath.inputs.reactome", "pypath.inputs.reactome.reactome_chebis", "pypath.inputs.reactome.reactome_pathway_relations", "pypath.inputs.reactome.reactome_pathways", "pypath.inputs.reactome.reactome_uniprots", "pypath.inputs.scconnect", "pypath.inputs.scconnect.scconnect_annotations", "pypath.inputs.scconnect.scconnect_complexes", "pypath.inputs.scconnect.scconnect_interactions", "pypath.inputs.science", "pypath.inputs.science.science_download", "pypath.inputs.sider", "pypath.inputs.sider.SiderDrug", "pypath.inputs.sider.SiderSideeffect", "pypath.inputs.sider.SiderSideeffectMeddra", "pypath.inputs.sider.SiderSideeffetFrequency", "pypath.inputs.sider.sider_drug_names", "pypath.inputs.sider.sider_meddra_side_effects", "pypath.inputs.sider.sider_side_effect_frequencies", "pypath.inputs.sider.sider_side_effects", "pypath.inputs.signalink", "pypath.inputs.signalink.signalink_annotations", "pypath.inputs.signalink.signalink_function_annotations", "pypath.inputs.signalink.signalink_interactions", "pypath.inputs.signalink.signalink_pathway_annotations", "pypath.inputs.signor", "pypath.inputs.signor.signor_complexes", "pypath.inputs.signor.signor_enzyme_substrate", "pypath.inputs.signor.signor_interactions", "pypath.inputs.signor.signor_pathway_annotations", "pypath.inputs.signor.signor_pathways", "pypath.inputs.signor.signor_protein_families", "pypath.inputs.spike", "pypath.inputs.spike.spike_complexes", "pypath.inputs.spike.spike_interactions", "pypath.inputs.stitch", "pypath.inputs.stitch.stitch_actions_interactions", "pypath.inputs.stitch.stitch_links_interactions", "pypath.inputs.string", "pypath.inputs.string.string_effects", "pypath.inputs.string.string_links_interactions", "pypath.inputs.string.string_physical_interactions", "pypath.inputs.string.string_species", "pypath.inputs.surfaceome", "pypath.inputs.surfaceome.surfaceome_annotations", "pypath.inputs.switches_elm", "pypath.inputs.switches_elm.get_switches_elm", "pypath.inputs.talklr", "pypath.inputs.talklr.talklr_annotations", "pypath.inputs.talklr.talklr_interactions", "pypath.inputs.talklr.talklr_raw", "pypath.inputs.tcdb", "pypath.inputs.tcdb.tcdb_annotations", "pypath.inputs.tcdb.tcdb_classes", "pypath.inputs.tcdb.tcdb_families", "pypath.inputs.tfcensus", "pypath.inputs.tfcensus.tfcensus_annotations", "pypath.inputs.threedcomplex", "pypath.inputs.threedcomplex.threedcomplex_chains", "pypath.inputs.threedcomplex.threedcomplex_complexes", "pypath.inputs.threedcomplex.threedcomplex_contacts", "pypath.inputs.threedcomplex.threedcomplex_ddi", "pypath.inputs.threedcomplex.threedcomplex_nresidues", "pypath.inputs.threedid", "pypath.inputs.threedid.get_3did", "pypath.inputs.threedid.get_3did_ddi", "pypath.inputs.threedid.get_3did_dmi", "pypath.inputs.threedid.process_3did_dmi", "pypath.inputs.topdb", "pypath.inputs.topdb.topdb_annotations", "pypath.inputs.transmir", "pypath.inputs.transmir.transmir_interactions", "pypath.inputs.trip", "pypath.inputs.trip.take_a_trip", "pypath.inputs.trip.trip_find_uniprot", "pypath.inputs.trip.trip_get_uniprot", "pypath.inputs.trip.trip_interactions", "pypath.inputs.trip.trip_process", "pypath.inputs.trip.trip_process_table", "pypath.inputs.trrust", "pypath.inputs.trrust.trrust_human", "pypath.inputs.trrust.trrust_interactions", "pypath.inputs.trrust.trrust_mouse", "pypath.inputs.twosides", "pypath.inputs.twosides.twosides_interactions", "pypath.inputs.unichem", "pypath.inputs.unichem.info", "pypath.inputs.unichem.unichem_info", "pypath.inputs.unichem.unichem_mapping", "pypath.inputs.unichem.unichem_sources", "pypath.inputs.uniprot", "pypath.inputs.uniprot.Taxon", "pypath.inputs.uniprot.UniprotQuery", "pypath.inputs.uniprot.UniprotRecordHistory", "pypath.inputs.uniprot.deleted_uniprot_genesymbol", "pypath.inputs.uniprot.get_uniprot_sec", "pypath.inputs.uniprot.idmapping_idtypes", "pypath.inputs.uniprot.protein_datasheet", "pypath.inputs.uniprot.query_builder", "pypath.inputs.uniprot.swissprot_deleted", "pypath.inputs.uniprot.trembl_deleted", "pypath.inputs.uniprot.uniprot_data", "pypath.inputs.uniprot.uniprot_deleted", "pypath.inputs.uniprot.uniprot_families", "pypath.inputs.uniprot.uniprot_history", "pypath.inputs.uniprot.uniprot_history_recent_datasheet", "pypath.inputs.uniprot.uniprot_keywords", "pypath.inputs.uniprot.uniprot_locations", "pypath.inputs.uniprot.uniprot_ncbi_taxids", "pypath.inputs.uniprot.uniprot_ncbi_taxids_2", "pypath.inputs.uniprot.uniprot_preprocess", "pypath.inputs.uniprot.uniprot_query", "pypath.inputs.uniprot.uniprot_recent_version", "pypath.inputs.uniprot.uniprot_taxonomy", "pypath.inputs.uniprot.uniprot_tissues", "pypath.inputs.uniprot.uniprot_topology", "pypath.inputs.uniprot.valid_uniprot", "pypath.inputs.uniprot_db", "pypath.inputs.uniprot_db.all_swissprots", "pypath.inputs.uniprot_db.all_trembls", "pypath.inputs.uniprot_db.all_uniprots", "pypath.inputs.uniprot_db.get_db", "pypath.inputs.uniprot_db.init_db", "pypath.inputs.uniprot_db.is_swissprot", "pypath.inputs.uniprot_db.is_trembl", "pypath.inputs.uniprot_db.is_uniprot", "pypath.inputs.wang", "pypath.inputs.wang.cui_interactions", "pypath.inputs.wang.hsn_interactions", "pypath.inputs.wang.wang_annotations", "pypath.inputs.wang.wang_interactions", "pypath.inputs.wojtowicz2020", "pypath.inputs.wojtowicz2020.wojtowicz2020_interactions", "pypath.inputs.wojtowicz2020.wojtowicz2020_raw", "pypath.inputs.zhong2015", "pypath.inputs.zhong2015.zhong2015_annotations", "pypath.internals", "pypath.internals.annot_formats", "pypath.internals.annot_formats.AnnotDef", "pypath.internals.annot_formats.AnnotDefKey", "pypath.internals.annot_formats.AnnotOp", "pypath.internals.annot_formats.AnnotationGroup", "pypath.internals.input_formats", "pypath.internals.input_formats.ArrayMapping", "pypath.internals.input_formats.BiomartMapping", "pypath.internals.input_formats.FileMapping", "pypath.internals.input_formats.HmdbMapping", "pypath.internals.input_formats.MappingInput", "pypath.internals.input_formats.NetworkInput", "pypath.internals.input_formats.PickleMapping", "pypath.internals.input_formats.ProMapping", "pypath.internals.input_formats.RampMapping", "pypath.internals.input_formats.ReadList", "pypath.internals.input_formats.UnichemMapping", "pypath.internals.input_formats.UniprotListMapping", "pypath.internals.input_formats.UniprotMapping", "pypath.internals.intera", "pypath.internals.intera.Complex", "pypath.internals.intera.Domain", "pypath.internals.intera.DomainDomain", "pypath.internals.intera.DomainMotif", "pypath.internals.intera.Interface", "pypath.internals.intera.Motif", "pypath.internals.intera.Ptm", "pypath.internals.intera.Regulation", "pypath.internals.intera.Residue", "pypath.internals.license", "pypath.internals.license.License", "pypath.internals.license.LicenseAttrib", "pypath.internals.license.LicenseFeature", "pypath.internals.license.LicensePurpose", "pypath.internals.license.LicenseSharing", "pypath.internals.maps", "pypath.internals.refs", "pypath.internals.refs.Reference", "pypath.internals.refs.get_pubmed_data", "pypath.internals.resource", "pypath.internals.resource.AbstractResource", "pypath.internals.resource.EnzymeSubstrateResource", "pypath.internals.resource.EnzymeSubstrateResourceKey", "pypath.internals.resource.NetworkDataset", "pypath.internals.resource.NetworkResource", "pypath.internals.resource.NetworkResourceKey", "pypath.internals.resource.ResourceAttributes", "pypath.legacy", "pypath.legacy.db_categories", "pypath.legacy.db_categories.get_categories", "pypath.legacy.db_categories.get_category", "pypath.log", "pypath.resources", "pypath.resources.controller", "pypath.resources.controller.ResourceController", "pypath.resources.data", "pypath.resources.data_formats", "pypath.resources.data_formats.activity_flow", "pypath.resources.data_formats.enzyme_substrate", "pypath.resources.data_formats.interaction", "pypath.resources.data_formats.interaction_htp", "pypath.resources.data_formats.pathway_bad", "pypath.resources.data_formats.reaction_pc", "pypath.resources.data_formats.transcription_deprecated", "pypath.resources.data_formats.transcription_onebyone", "pypath.resources.get_controller", "pypath.resources.licenses", "pypath.resources.licenses.Licenses", "pypath.resources.network", "pypath.resources.network.choose_dataset", "pypath.resources.network.dataset_priority", "pypath.resources.network.dorothea_expand_levels", "pypath.resources.urls", "pypath.share", "pypath.share.cache", "pypath.share.cache.cache_item", "pypath.share.cache.cache_path", "pypath.share.cache.default_cachedir", "pypath.share.cache.get_cachedir", "pypath.share.common", "pypath.share.constants", "pypath.share.curl", "pypath.share.curl.Curl", "pypath.share.curl.FileOpener", "pypath.share.curl.RemoteFile", "pypath.share.curl.cache_delete_off", "pypath.share.curl.cache_delete_on", "pypath.share.curl.cache_off", "pypath.share.curl.cache_on", "pypath.share.curl.cache_print_off", "pypath.share.curl.cache_print_on", "pypath.share.curl.debug_off", "pypath.share.curl.debug_on", "pypath.share.curl.dryrun_off", "pypath.share.curl.dryrun_on", "pypath.share.curl.is_url", "pypath.share.curl.preserve_off", "pypath.share.curl.preserve_on", "pypath.share.progress", "pypath.share.progress.Progress", "pypath.share.session", "pypath.share.settings", "pypath.utils", "pypath.utils.go", "pypath.utils.go.GOAnnotation", "pypath.utils.go.GOCustomAnnotation", "pypath.utils.go.GeneOntology", "pypath.utils.go.annotate", "pypath.utils.go.get_db", "pypath.utils.go.init_db", "pypath.utils.go.load_go", "pypath.utils.mapping", "pypath.utils.mapping.MapReader", "pypath.utils.mapping.Mapper", "pypath.utils.mapping.MappingTable", "pypath.utils.mapping.MappingTableKey", "pypath.utils.mapping.UNIPROT_ID_TYPES", "pypath.utils.mapping.get_mapper", "pypath.utils.mapping.guess_type", "pypath.utils.mapping.id_from_label", "pypath.utils.mapping.id_from_label0", "pypath.utils.mapping.id_types", "pypath.utils.mapping.init", "pypath.utils.mapping.label", "pypath.utils.mapping.map_name", "pypath.utils.mapping.map_name0", "pypath.utils.mapping.map_names", "pypath.utils.mapping.mapping_tables", "pypath.utils.mapping.translation_df", "pypath.utils.mapping.translation_dict", "pypath.utils.metabo", "pypath.utils.orthology", "pypath.utils.orthology.EnsemblOrtholog", "pypath.utils.orthology.EnsemblOrthology", "pypath.utils.orthology.HomologeneOrtholog", "pypath.utils.orthology.HomologeneOrthology", "pypath.utils.orthology.OmaOrtholog", "pypath.utils.orthology.OmaOrthology", "pypath.utils.orthology.OrthologBase", "pypath.utils.orthology.OrthologMeta", "pypath.utils.orthology.OrthologyManager", "pypath.utils.orthology.OrthologyTableKey", "pypath.utils.orthology.ProteinOrthology", "pypath.utils.orthology.Proteomes", "pypath.utils.orthology.PtmOrthology", "pypath.utils.orthology.SequenceContainer", "pypath.utils.orthology.get_df", "pypath.utils.orthology.get_dict", "pypath.utils.orthology.get_manager", "pypath.utils.orthology.init", "pypath.utils.orthology.translate", "pypath.utils.orthology.translate_df", "pypath.utils.pdb", "pypath.utils.pdb.Residue", "pypath.utils.pdb.ResidueMapper", "pypath.utils.pdb.Segment", "pypath.utils.pdb.residue_pdb", "pypath.utils.proteomicsdb", "pypath.utils.proteomicsdb.ProteomicsDB", "pypath.utils.pyreact", "pypath.utils.pyreact.AttributeHandler", "pypath.utils.pyreact.BioPaxReader", "pypath.utils.pyreact.Complex", "pypath.utils.pyreact.ComplexVariations", "pypath.utils.pyreact.Control", "pypath.utils.pyreact.Entity", "pypath.utils.pyreact.EntitySet", "pypath.utils.pyreact.Intersecting", "pypath.utils.pyreact.Protein", "pypath.utils.pyreact.ProteinFamily", "pypath.utils.pyreact.PyReact", "pypath.utils.pyreact.Reaction", "pypath.utils.pyreact.ReactionSide", "pypath.utils.pyreact.Reference", "pypath.utils.reflists", "pypath.utils.reflists.ReferenceListManager", "pypath.utils.reflists.check", "pypath.utils.reflists.get_manager", "pypath.utils.reflists.get_reflist", "pypath.utils.reflists.init", "pypath.utils.reflists.is_not", "pypath.utils.reflists.select", "pypath.utils.residues", "pypath.utils.residues.ResidueMapper", "pypath.utils.seq", "pypath.utils.seq.Pfam", "pypath.utils.seq.Resource", "pypath.utils.seq.Seq", "pypath.utils.seq.get_isoforms", "pypath.utils.seq.read_fasta", "pypath.utils.seq.swissprot_seq", "pypath.utils.taxonomy", "pypath.utils.taxonomy.ensure_common_name", "pypath.utils.taxonomy.ensure_ensembl_name", "pypath.utils.taxonomy.ensure_latin_name", "pypath.utils.taxonomy.ensure_ncbi_tax_id", "pypath.utils.taxonomy.get_db", "pypath.utils.taxonomy.init_db", "pypath.utils.taxonomy.short_latin_names", "pypath.utils.taxonomy.shorten_latin_name", "pypath.utils.taxonomy.taxid_from_common_name", "pypath.utils.taxonomy.taxid_from_dbptm_taxon_name", "pypath.utils.taxonomy.taxid_from_ensembl_name", "pypath.utils.taxonomy.taxid_from_latin_name", "pypath.utils.taxonomy.taxid_from_nonstandard", "pypath.utils.taxonomy.uniprot_taxid", "pypath.utils.unichem", "pypath.utils.unichem.Unichem", "pypath.visual", "pypath.visual.drawing", "pypath.visual.drawing.InterSet", "pypath.visual.drawing.Plot", "pypath.visual.igraph_drawing", "pypath.visual.igraph_drawing.AbstractCairoGraphDrawer", "pypath.visual.igraph_drawing.ArrowEdgeDrawer", "pypath.visual.igraph_drawing.DefaultGraphDrawerFFsupport", "pypath.visual.igraph_drawing.DefaultVertexDrawer", "pypath.visual.igraph_drawing.TextDrawer", "pypath.visual.igraph_drawing.edge", "pypath.visual.igraph_drawing.edge.AbstractEdgeDrawer", "pypath.visual.igraph_drawing.edge.AlphaVaryingEdgeDrawer", "pypath.visual.igraph_drawing.edge.ArrowEdgeDrawer", "pypath.visual.igraph_drawing.edge.DarkToLightEdgeDrawer", "pypath.visual.igraph_drawing.edge.LightToDarkEdgeDrawer", "pypath.visual.igraph_drawing.edge.TaperedEdgeDrawer", "pypath.visual.igraph_drawing.vertex", "pypath.visual.igraph_drawing.vertex.AbstractCairoDrawer", "pypath.visual.igraph_drawing.vertex.AbstractCairoVertexDrawer", "pypath.visual.igraph_drawing.vertex.AbstractDrawer", "pypath.visual.igraph_drawing.vertex.AbstractVertexDrawer", "pypath.visual.igraph_drawing.vertex.DefaultVertexDrawer", "Contents", "Welcome to pypath!", "The pypath book", "Reference", "Release history", "Webservice"], "terms": {"i": [0, 28, 29, 30, 33, 34, 39, 40, 42, 43, 44, 48, 50, 66, 67, 68, 69, 70, 81, 82, 107, 115, 116, 127, 133, 136, 139, 152, 155, 197, 205, 208, 209, 247, 248, 249, 250, 251, 253, 255, 256, 258, 260, 274, 287, 309, 310, 311, 314, 330, 331, 345, 346, 350, 351, 355, 356, 374, 377, 401, 408, 414, 420, 437, 443, 453, 456, 499, 507, 551, 552, 553, 574, 575, 576, 577, 578, 588, 591, 592, 610, 621, 630, 660, 662, 681, 684, 694, 697, 732, 733, 734, 735, 739, 748, 757, 760, 766, 776, 811, 812, 813, 816, 818, 821, 831, 843, 844, 845, 848, 858, 859, 860, 861, 863, 870, 874, 875, 876, 877, 880, 881, 888, 889, 890, 891, 899, 900, 902, 911, 921, 922, 928, 939, 940, 942, 943, 944, 945, 946, 947, 948, 949, 950, 951, 953, 954, 956, 961, 963, 969, 970, 971, 972, 981, 982, 983, 984, 989, 990, 991, 992, 993, 997, 998, 999, 1001, 1002, 1003, 1004, 1007, 1008, 1010, 1012, 1015, 1018, 1020, 1022, 1025, 1029, 1030, 1032, 1033, 1044, 1049, 1056, 1064, 1072, 1076, 1077, 1078, 1079, 1080, 1081, 1082, 1084, 1086, 1087, 1088, 1089, 1092, 1093], "python": [0, 95, 351, 356, 1015, 1089, 1090, 1092, 1093], "modul": [0, 1, 4, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 27, 35, 39, 40, 42, 45, 48, 53, 56, 82, 95, 197, 298, 341, 344, 349, 354, 357, 454, 499, 681, 793, 856, 861, 863, 870, 874, 876, 897, 904, 909, 913, 922, 930, 933, 934, 942, 943, 944, 945, 946, 947, 948, 949, 950, 951, 953, 954, 959, 961, 962, 963, 966, 968, 970, 974, 979, 1005, 1006, 1015, 1065, 1069, 1082, 1088, 1091, 1092, 1093], "build": [0, 33, 34, 41, 48, 818, 861, 969, 992, 1088, 1089, 1092], "molecular": [0, 7, 28, 29, 39, 40, 41, 42, 48, 344, 349, 354, 456, 457, 458, 552, 553, 766, 861, 877, 1088, 1089, 1092], "biologi": [0, 1089, 1090], "databas": [0, 25, 26, 27, 29, 34, 35, 38, 39, 40, 42, 48, 54, 58, 71, 72, 73, 105, 107, 108, 110, 114, 115, 116, 117, 128, 129, 130, 131, 132, 133, 134, 135, 136, 159, 161, 163, 164, 173, 175, 176, 180, 188, 215, 217, 219, 234, 235, 236, 237, 238, 239, 240, 248, 249, 250, 251, 253, 255, 256, 258, 260, 285, 287, 292, 293, 332, 333, 370, 375, 382, 437, 439, 448, 456, 457, 458, 467, 514, 530, 557, 566, 568, 569, 577, 582, 583, 616, 617, 623, 626, 630, 677, 693, 694, 695, 697, 698, 736, 737, 738, 739, 778, 780, 781, 782, 793, 801, 804, 813, 861, 866, 871, 877, 906, 907, 916, 918, 919, 939, 965, 966, 969, 1052, 1088, 1092, 1093], "With": [0, 1022, 1025, 1030, 1089], "you": [0, 34, 42, 48, 116, 344, 345, 349, 350, 354, 355, 408, 456, 457, 458, 552, 661, 662, 697, 861, 875, 911, 939, 940, 943, 949, 954, 963, 970, 981, 990, 1015, 1018, 1072, 1088, 1091, 1093], "can": [0, 3, 29, 34, 38, 39, 40, 42, 48, 93, 116, 137, 344, 346, 349, 351, 354, 356, 412, 456, 457, 458, 572, 657, 697, 757, 760, 761, 812, 818, 821, 831, 860, 861, 875, 877, 881, 911, 933, 939, 961, 963, 969, 970, 981, 982, 983, 990, 992, 994, 997, 999, 1001, 1008, 1011, 1018, 1069, 1072, 1076, 1077, 1078, 1079, 1080, 1081, 1084, 1086, 1087, 1089, 1090, 1091, 1092, 1093], "access": [0, 4, 197, 258, 303, 304, 305, 309, 310, 311, 313, 314, 315, 317, 318, 319, 320, 351, 356, 383, 408, 619, 836, 875, 922, 954, 961, 963, 970, 981, 983, 1005, 1018, 1088, 1089, 1092], "process": [0, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 35, 38, 48, 60, 82, 87, 88, 102, 104, 123, 125, 175, 229, 250, 251, 256, 327, 344, 345, 346, 349, 350, 351, 354, 355, 356, 375, 386, 387, 404, 405, 455, 480, 487, 488, 499, 532, 551, 649, 652, 690, 694, 703, 715, 718, 743, 747, 748, 776, 796, 798, 812, 815, 816, 818, 821, 831, 848, 850, 858, 861, 897, 911, 932, 933, 939, 961, 969, 970, 1015, 1018, 1027, 1089, 1092], "combin": [0, 12, 38, 40, 249, 250, 251, 253, 255, 256, 456, 757, 760, 1027, 1029, 1089, 1090, 1093], "more": [0, 29, 33, 39, 42, 48, 82, 85, 87, 88, 93, 94, 178, 197, 269, 287, 309, 314, 684, 697, 738, 807, 809, 812, 818, 821, 831, 848, 911, 961, 970, 981, 982, 983, 990, 992, 994, 997, 999, 1007, 1008, 1011, 1015, 1018, 1027, 1064, 1076, 1077, 1078, 1079, 1080, 1081, 1089, 1090, 1092, 1093], "than": [0, 35, 48, 87, 88, 287, 344, 349, 354, 684, 738, 969, 970, 971, 1089, 1090, 1093], "170": 0, "public": [0, 249, 255, 714, 848], "resourc": [0, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 39, 40, 42, 48, 127, 194, 195, 197, 249, 250, 251, 253, 255, 256, 297, 377, 414, 591, 600, 690, 766, 776, 807, 808, 858, 859, 861, 868, 939, 969, 970, 981, 983, 984, 990, 992, 994, 996, 998, 999, 1042, 1088, 1089, 1092, 1093], "interact": [0, 33, 34, 35, 39, 40, 48, 58, 60, 61, 87, 88, 102, 104, 107, 108, 114, 116, 117, 125, 132, 133, 135, 136, 142, 148, 163, 164, 180, 184, 194, 195, 211, 212, 215, 217, 221, 222, 228, 243, 248, 249, 250, 251, 252, 253, 254, 255, 256, 258, 261, 266, 274, 279, 327, 375, 386, 387, 399, 400, 404, 405, 406, 407, 408, 420, 427, 430, 455, 456, 458, 467, 492, 493, 497, 498, 499, 530, 540, 542, 544, 557, 559, 560, 582, 614, 616, 617, 637, 649, 651, 652, 653, 656, 678, 690, 715, 718, 728, 743, 757, 760, 761, 781, 796, 797, 798, 801, 804, 847, 850, 868, 876, 877, 895, 911, 917, 918, 919, 1018, 1088, 1089, 1092], "network": [0, 5, 33, 41, 102, 454, 760, 900, 911, 1069, 1088, 1089, 1092], "includ": [0, 42, 48, 53, 60, 91, 93, 94, 97, 114, 116, 117, 125, 128, 152, 163, 164, 243, 252, 254, 266, 306, 308, 327, 346, 351, 356, 571, 572, 621, 637, 760, 761, 797, 812, 818, 821, 831, 863, 870, 874, 911, 916, 918, 919, 961, 963, 990, 992, 994, 997, 999, 1003, 1004, 1007, 1018, 1090, 1092, 1093], "annot": [0, 39, 40, 42, 82, 106, 110, 114, 128, 129, 134, 144, 146, 183, 188, 208, 227, 259, 260, 278, 301, 306, 308, 309, 310, 311, 314, 380, 397, 434, 435, 439, 480, 551, 553, 691, 726, 750, 776, 858, 860, 861, 877, 961, 962, 966, 967, 1015, 1088, 1089, 1092], "about": [0, 7, 35, 38, 42, 48, 54, 55, 248, 258, 269, 285, 333, 436, 616, 624, 625, 626, 627, 628, 629, 630, 631, 656, 684, 738, 806, 807, 946, 947, 956, 963, 970, 971, 981, 1015, 1064, 1088, 1089, 1093], "function": [0, 3, 4, 6, 29, 32, 39, 42, 47, 56, 57, 59, 62, 65, 75, 77, 80, 82, 86, 89, 95, 101, 103, 105, 107, 109, 111, 113, 115, 118, 120, 126, 138, 145, 149, 151, 159, 162, 165, 170, 171, 172, 174, 177, 179, 182, 185, 187, 189, 193, 196, 198, 200, 204, 207, 210, 214, 220, 223, 226, 230, 233, 241, 246, 257, 264, 268, 270, 275, 277, 282, 284, 286, 288, 291, 294, 299, 321, 323, 325, 329, 334, 337, 339, 342, 344, 347, 349, 352, 354, 362, 364, 367, 369, 373, 377, 379, 384, 389, 391, 393, 396, 398, 411, 413, 418, 421, 424, 426, 429, 431, 433, 438, 440, 442, 445, 449, 452, 462, 479, 481, 483, 486, 489, 494, 496, 500, 502, 504, 506, 510, 513, 515, 521, 523, 525, 529, 531, 539, 541, 543, 545, 548, 550, 554, 556, 558, 561, 565, 567, 570, 573, 579, 581, 584, 587, 590, 607, 609, 613, 615, 618, 623, 632, 634, 636, 640, 643, 646, 659, 661, 662, 663, 666, 669, 674, 676, 680, 682, 689, 692, 700, 720, 725, 729, 731, 738, 740, 745, 752, 755, 758, 760, 763, 765, 766, 767, 771, 775, 777, 783, 788, 790, 792, 799, 803, 805, 810, 812, 818, 821, 831, 837, 846, 848, 851, 854, 858, 861, 893, 905, 909, 925, 931, 932, 938, 939, 960, 968, 969, 970, 973, 974, 981, 983, 988, 997, 1008, 1009, 1015, 1031, 1041, 1048, 1067, 1072, 1089, 1090, 1091, 1092, 1093], "local": [0, 60, 128, 129, 131, 134, 490, 499, 743, 848, 969, 1089, 1090, 1092, 1093], "structur": [0, 42, 265, 345, 350, 355, 365, 366, 427, 437, 610, 612, 662, 780, 781, 812, 818, 821, 831, 876, 1011, 1018, 1064, 1084, 1086, 1087, 1088, 1089, 1092], "other": [0, 3, 29, 34, 35, 39, 42, 48, 169, 311, 314, 344, 349, 354, 382, 568, 569, 620, 621, 622, 657, 861, 863, 866, 870, 871, 873, 874, 877, 915, 939, 963, 970, 984, 992, 1015, 1018, 1027, 1044, 1052, 1089, 1093], "properti": [0, 39, 40, 48, 258, 812, 877, 902, 969, 971, 990, 992, 994, 997, 999, 1003, 1004, 1007, 1076, 1077, 1078, 1079, 1080, 1081, 1084, 1086, 1087, 1090], "gene": [0, 42, 48, 90, 91, 93, 94, 107, 108, 110, 150, 163, 164, 188, 205, 206, 209, 228, 295, 296, 297, 332, 333, 439, 464, 468, 470, 471, 472, 474, 475, 478, 530, 540, 542, 544, 551, 552, 553, 568, 569, 585, 586, 616, 657, 667, 668, 690, 693, 694, 791, 801, 814, 961, 962, 963, 964, 967, 969, 970, 976, 977, 980, 981, 983, 992, 997, 1007, 1088, 1089, 1092, 1093], "protein": [0, 29, 33, 34, 42, 48, 123, 128, 130, 131, 132, 135, 136, 144, 146, 163, 164, 175, 176, 180, 199, 227, 229, 243, 261, 263, 278, 289, 290, 295, 296, 301, 309, 310, 343, 344, 345, 346, 377, 380, 420, 427, 430, 435, 456, 457, 458, 514, 517, 519, 520, 557, 559, 611, 616, 617, 656, 657, 664, 727, 728, 748, 757, 760, 761, 798, 821, 861, 865, 868, 870, 872, 876, 877, 878, 880, 881, 882, 883, 885, 969, 970, 973, 980, 981, 983, 992, 997, 999, 1001, 1007, 1015, 1018, 1027, 1029, 1041, 1042, 1043, 1044, 1088, 1089, 1092, 1093], "also": [0, 34, 42, 48, 54, 114, 116, 117, 346, 351, 356, 420, 662, 877, 900, 970, 990, 992, 994, 997, 999, 1003, 1004, 1007, 1027, 1069, 1090, 1093], "provid": [0, 3, 7, 8, 9, 10, 11, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 28, 29, 34, 35, 38, 39, 40, 41, 42, 48, 107, 115, 116, 133, 136, 180, 197, 248, 258, 266, 309, 311, 314, 346, 351, 356, 420, 499, 552, 621, 656, 657, 781, 812, 818, 821, 831, 863, 870, 874, 876, 897, 900, 911, 922, 962, 963, 970, 984, 990, 992, 994, 997, 999, 1001, 1005, 1008, 1032, 1033, 1037, 1038, 1042, 1082, 1089, 1090, 1092, 1093], "number": [0, 30, 34, 38, 42, 43, 44, 48, 50, 66, 67, 68, 69, 70, 81, 87, 88, 93, 127, 139, 170, 205, 219, 247, 269, 287, 330, 331, 374, 412, 414, 420, 427, 430, 435, 443, 453, 456, 457, 458, 507, 588, 591, 592, 624, 625, 627, 628, 629, 630, 631, 654, 657, 660, 684, 732, 733, 734, 735, 756, 757, 782, 811, 813, 836, 858, 859, 860, 875, 881, 885, 895, 899, 902, 956, 961, 963, 970, 972, 981, 983, 989, 991, 993, 998, 1001, 1010, 1011, 1012, 1018, 1040, 1064, 1089, 1090, 1093], "util": [0, 34, 685, 895, 1088, 1089, 1092], "id": [0, 29, 34, 35, 39, 42, 48, 73, 82, 87, 88, 91, 92, 93, 94, 97, 100, 104, 106, 114, 128, 131, 132, 134, 135, 146, 154, 163, 215, 217, 248, 249, 252, 254, 255, 262, 266, 267, 278, 279, 281, 285, 287, 295, 296, 297, 301, 306, 308, 309, 310, 311, 332, 333, 344, 349, 354, 365, 371, 372, 420, 432, 435, 437, 467, 473, 474, 475, 491, 495, 514, 517, 519, 520, 552, 568, 569, 572, 610, 612, 616, 620, 621, 622, 637, 654, 657, 658, 662, 667, 668, 681, 683, 684, 685, 686, 717, 728, 737, 738, 739, 748, 762, 764, 776, 782, 795, 798, 801, 806, 807, 808, 809, 812, 814, 815, 816, 821, 831, 833, 843, 844, 845, 863, 866, 870, 871, 873, 874, 875, 877, 895, 961, 962, 964, 967, 969, 970, 971, 973, 974, 975, 976, 977, 981, 982, 983, 984, 989, 990, 991, 992, 993, 994, 996, 997, 999, 1001, 1003, 1004, 1007, 1008, 1011, 1018, 1027, 1047, 1049, 1052, 1062, 1064, 1088, 1093], "translat": [0, 34, 42, 163, 262, 267, 278, 279, 281, 344, 349, 354, 371, 372, 473, 474, 475, 491, 569, 654, 657, 658, 681, 685, 728, 808, 812, 818, 821, 831, 833, 866, 871, 873, 875, 876, 962, 969, 970, 971, 974, 981, 982, 983, 984, 985, 986, 990, 992, 994, 997, 999, 1001, 1008, 1043, 1064, 1088, 1092, 1093], "orthologi": [0, 34, 90, 371, 372, 654, 657, 1088, 1092], "handl": [0, 876, 939, 970, 971, 1052, 1089, 1090], "taxonomi": [0, 29, 34, 35, 42, 48, 87, 88, 104, 248, 249, 252, 254, 255, 266, 306, 308, 309, 310, 311, 351, 356, 371, 372, 568, 569, 621, 622, 637, 654, 657, 667, 668, 748, 801, 814, 815, 833, 875, 877, 969, 970, 971, 981, 983, 990, 992, 994, 997, 999, 1001, 1003, 1004, 1007, 1008, 1047, 1088, 1089], "sequenc": [0, 34, 35, 48, 412, 427, 610, 657, 662, 881, 1001, 1002, 1011, 1041, 1042, 1043, 1044, 1045, 1046, 1047, 1088], "serv": [0, 25, 41, 798, 897, 973, 1011, 1029, 1040, 1093], "web": [0, 53, 94, 105, 269, 365, 686, 818, 875, 969, 1064, 1089, 1090, 1092], "server": [0, 911, 1089, 1090, 1092, 1093], "etc": [0, 39, 40, 48, 344, 349, 354, 933, 1089, 1090, 1092, 1093], "member": [0, 1, 2, 4, 6, 28, 32, 38, 41, 45, 47, 53, 56, 57, 59, 62, 65, 75, 77, 80, 86, 89, 95, 101, 103, 105, 109, 111, 113, 118, 120, 126, 138, 144, 145, 149, 151, 159, 162, 165, 172, 174, 177, 179, 182, 185, 187, 189, 193, 196, 198, 200, 204, 207, 210, 214, 220, 223, 226, 230, 233, 241, 246, 257, 264, 268, 270, 275, 277, 282, 284, 286, 288, 291, 294, 299, 321, 323, 325, 329, 334, 337, 339, 341, 342, 347, 352, 357, 358, 360, 361, 362, 364, 367, 369, 373, 379, 384, 389, 391, 393, 396, 398, 411, 413, 418, 421, 424, 426, 429, 431, 433, 438, 440, 442, 445, 449, 452, 456, 462, 479, 481, 483, 486, 489, 494, 496, 500, 502, 504, 506, 510, 512, 513, 515, 521, 523, 525, 529, 531, 539, 541, 543, 545, 548, 550, 554, 556, 558, 561, 565, 567, 570, 573, 579, 581, 584, 587, 590, 607, 609, 613, 615, 618, 623, 632, 634, 636, 640, 643, 646, 659, 663, 666, 669, 674, 676, 680, 682, 689, 692, 699, 700, 720, 725, 729, 731, 740, 745, 752, 755, 758, 763, 765, 767, 771, 775, 777, 783, 788, 790, 792, 799, 803, 805, 810, 837, 846, 851, 854, 856, 857, 861, 862, 876, 877, 886, 892, 893, 896, 904, 905, 909, 910, 912, 913, 923, 925, 929, 930, 931, 936, 937, 938, 955, 957, 958, 959, 960, 968, 987, 988, 1009, 1014, 1016, 1019, 1020, 1023, 1026, 1027, 1029, 1031, 1039, 1041, 1048, 1063, 1065, 1066, 1069, 1075, 1076, 1077, 1078, 1079, 1080, 1081, 1082, 1090], "class": [2, 3, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 28, 29, 30, 31, 32, 33, 34, 35, 38, 39, 40, 41, 42, 43, 44, 46, 47, 48, 49, 50, 65, 66, 67, 68, 69, 70, 74, 80, 81, 126, 127, 138, 139, 246, 247, 257, 258, 269, 292, 329, 330, 331, 351, 356, 358, 359, 373, 374, 413, 414, 442, 443, 452, 453, 506, 507, 514, 587, 588, 590, 591, 592, 659, 660, 731, 732, 733, 734, 735, 764, 810, 811, 812, 813, 821, 831, 857, 858, 859, 860, 861, 862, 863, 864, 865, 866, 867, 868, 869, 870, 871, 872, 873, 874, 875, 876, 877, 878, 879, 880, 881, 882, 883, 884, 885, 886, 887, 888, 889, 890, 891, 893, 894, 896, 897, 898, 899, 900, 901, 902, 903, 910, 911, 923, 924, 938, 939, 940, 941, 942, 943, 944, 945, 946, 947, 948, 949, 950, 951, 953, 954, 955, 956, 960, 961, 962, 963, 968, 969, 970, 971, 972, 973, 988, 989, 990, 991, 992, 993, 994, 995, 996, 997, 998, 999, 1000, 1001, 1002, 1009, 1010, 1011, 1012, 1014, 1015, 1016, 1017, 1018, 1019, 1020, 1021, 1022, 1023, 1024, 1025, 1026, 1027, 1028, 1029, 1030, 1031, 1032, 1039, 1040, 1041, 1042, 1043, 1044, 1063, 1064, 1066, 1067, 1068, 1069, 1070, 1072, 1075, 1076, 1077, 1078, 1079, 1080, 1081, 1082, 1083, 1084, 1085, 1086, 1087, 1089, 1091, 1092, 1093], "none": [3, 5, 7, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 29, 33, 34, 35, 39, 40, 42, 48, 49, 52, 82, 85, 87, 88, 93, 94, 106, 107, 108, 128, 137, 152, 167, 170, 171, 173, 188, 194, 197, 199, 231, 245, 252, 254, 258, 259, 260, 261, 262, 263, 266, 269, 276, 278, 289, 290, 298, 302, 307, 309, 310, 313, 315, 340, 344, 345, 346, 349, 350, 351, 354, 355, 356, 365, 366, 375, 376, 377, 378, 415, 419, 420, 467, 551, 552, 553, 568, 569, 571, 572, 600, 610, 611, 621, 622, 626, 658, 675, 678, 693, 694, 697, 698, 704, 706, 718, 756, 776, 780, 781, 784, 785, 786, 793, 812, 818, 821, 831, 840, 841, 842, 845, 858, 861, 864, 865, 867, 868, 869, 870, 872, 874, 875, 877, 878, 879, 880, 881, 882, 883, 884, 885, 887, 895, 897, 898, 900, 901, 903, 911, 924, 928, 934, 935, 939, 940, 944, 945, 956, 961, 962, 963, 965, 966, 969, 970, 975, 976, 977, 979, 980, 981, 982, 983, 984, 985, 986, 990, 992, 994, 997, 999, 1000, 1001, 1003, 1004, 1007, 1008, 1011, 1015, 1018, 1019, 1020, 1021, 1022, 1023, 1025, 1026, 1027, 1028, 1029, 1032, 1033, 1035, 1037, 1038, 1042, 1043, 1049, 1064, 1067, 1068, 1090], "kwarg": [3, 5, 7, 8, 9, 10, 11, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 26, 27, 29, 34, 35, 36, 37, 39, 40, 42, 48, 51, 52, 197, 326, 328, 593, 594, 595, 596, 597, 598, 599, 601, 602, 603, 604, 605, 606, 679, 697, 702, 709, 711, 718, 750, 812, 818, 821, 831, 887, 897, 898, 901, 902, 903, 911, 939, 970, 974, 979, 990, 992, 994, 996, 997, 999, 1001, 1003, 1008, 1068, 1090], "sourc": [3, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 29, 31, 33, 34, 35, 36, 37, 39, 40, 42, 43, 48, 49, 51, 52, 54, 55, 58, 60, 61, 63, 64, 66, 67, 68, 69, 70, 71, 72, 73, 74, 76, 78, 79, 82, 83, 84, 85, 87, 88, 90, 91, 92, 93, 94, 96, 97, 98, 99, 100, 102, 104, 106, 107, 108, 110, 112, 114, 115, 116, 117, 119, 121, 122, 123, 124, 125, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 140, 141, 142, 143, 144, 146, 147, 148, 150, 152, 153, 154, 155, 156, 157, 158, 160, 161, 163, 164, 166, 167, 168, 169, 170, 171, 173, 175, 176, 178, 180, 181, 183, 184, 186, 188, 190, 191, 192, 194, 195, 197, 199, 201, 202, 203, 205, 206, 208, 209, 211, 212, 213, 215, 216, 217, 218, 219, 221, 222, 224, 225, 227, 228, 229, 231, 232, 234, 235, 236, 237, 238, 239, 240, 242, 243, 244, 245, 248, 249, 251, 252, 253, 258, 259, 260, 261, 262, 263, 265, 266, 267, 269, 271, 272, 273, 274, 276, 278, 279, 280, 281, 283, 285, 287, 289, 290, 292, 293, 295, 296, 297, 298, 300, 301, 302, 304, 305, 307, 308, 309, 310, 311, 312, 314, 315, 316, 318, 319, 320, 322, 324, 326, 327, 328, 330, 331, 332, 333, 335, 336, 338, 340, 343, 344, 345, 346, 348, 349, 350, 351, 353, 354, 355, 356, 359, 363, 365, 366, 368, 370, 371, 372, 375, 376, 377, 378, 380, 381, 382, 383, 385, 386, 387, 388, 390, 392, 394, 395, 397, 399, 400, 401, 402, 403, 404, 405, 406, 407, 408, 409, 410, 412, 415, 416, 417, 419, 420, 422, 423, 425, 427, 428, 430, 432, 434, 435, 436, 437, 439, 441, 444, 446, 447, 448, 450, 451, 454, 455, 456, 457, 458, 459, 460, 461, 467, 480, 482, 484, 485, 487, 488, 490, 491, 492, 493, 495, 497, 498, 499, 501, 503, 505, 507, 508, 509, 511, 514, 516, 517, 518, 519, 520, 522, 524, 526, 527, 528, 530, 532, 533, 534, 535, 536, 537, 538, 540, 542, 544, 546, 547, 549, 551, 552, 553, 555, 557, 559, 560, 562, 563, 564, 566, 568, 569, 571, 572, 574, 575, 576, 577, 578, 580, 582, 583, 585, 586, 589, 600, 608, 610, 611, 612, 614, 616, 617, 619, 620, 621, 622, 626, 630, 633, 635, 637, 638, 639, 641, 642, 644, 645, 647, 648, 649, 650, 651, 652, 653, 654, 655, 656, 657, 658, 661, 662, 664, 665, 667, 668, 670, 671, 672, 673, 675, 677, 678, 679, 681, 683, 684, 685, 686, 687, 688, 690, 691, 693, 694, 695, 696, 697, 698, 701, 702, 703, 704, 705, 706, 707, 708, 709, 710, 711, 712, 713, 714, 715, 716, 717, 718, 719, 721, 722, 723, 724, 726, 727, 728, 730, 732, 733, 734, 735, 736, 737, 738, 739, 741, 742, 743, 744, 746, 747, 748, 749, 750, 751, 753, 754, 756, 757, 759, 760, 761, 762, 764, 766, 768, 769, 770, 772, 773, 774, 776, 778, 779, 780, 781, 782, 784, 785, 786, 787, 789, 791, 793, 794, 795, 796, 797, 798, 800, 801, 802, 804, 806, 807, 808, 809, 812, 814, 815, 816, 817, 818, 819, 820, 821, 822, 823, 824, 825, 826, 827, 828, 829, 830, 831, 832, 833, 834, 835, 836, 838, 839, 840, 841, 842, 843, 844, 845, 847, 848, 849, 850, 852, 853, 855, 858, 860, 861, 863, 864, 865, 866, 867, 868, 869, 870, 871, 872, 873, 874, 875, 877, 878, 879, 880, 881, 882, 883, 884, 885, 887, 888, 889, 890, 891, 894, 895, 897, 898, 900, 901, 902, 903, 906, 907, 908, 911, 922, 924, 926, 927, 928, 932, 933, 934, 935, 939, 940, 941, 942, 943, 944, 945, 946, 947, 948, 949, 950, 951, 952, 953, 954, 956, 961, 962, 963, 964, 965, 966, 969, 970, 971, 974, 975, 976, 977, 978, 979, 980, 981, 982, 983, 984, 985, 986, 989, 990, 991, 992, 993, 994, 995, 996, 997, 998, 999, 1000, 1001, 1002, 1003, 1004, 1005, 1006, 1007, 1008, 1011, 1013, 1015, 1017, 1018, 1019, 1020, 1021, 1022, 1023, 1024, 1025, 1026, 1027, 1028, 1029, 1030, 1032, 1033, 1034, 1035, 1036, 1037, 1038, 1040, 1042, 1043, 1044, 1045, 1046, 1047, 1049, 1050, 1051, 1052, 1053, 1054, 1055, 1056, 1057, 1058, 1059, 1060, 1061, 1062, 1064, 1067, 1068, 1070, 1072, 1076, 1077, 1078, 1079, 1080, 1081, 1083, 1084, 1085, 1086, 1087, 1089, 1090, 1092, 1093], "base": [3, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 29, 30, 31, 33, 34, 35, 39, 40, 42, 43, 44, 48, 49, 50, 66, 67, 68, 69, 70, 81, 127, 139, 247, 249, 250, 251, 253, 255, 256, 258, 330, 331, 359, 374, 414, 443, 453, 507, 588, 591, 592, 654, 660, 667, 668, 677, 732, 733, 734, 735, 780, 781, 811, 812, 813, 858, 859, 860, 861, 863, 864, 865, 866, 867, 868, 869, 870, 871, 872, 873, 874, 875, 877, 878, 879, 880, 881, 882, 883, 884, 885, 887, 888, 889, 890, 891, 894, 897, 898, 899, 900, 901, 902, 903, 911, 924, 939, 940, 941, 942, 943, 944, 945, 946, 947, 948, 949, 950, 951, 953, 954, 956, 961, 962, 963, 969, 970, 971, 972, 989, 990, 991, 992, 993, 994, 995, 996, 997, 998, 999, 1000, 1001, 1002, 1010, 1011, 1012, 1015, 1017, 1018, 1019, 1020, 1021, 1022, 1023, 1024, 1025, 1026, 1027, 1028, 1029, 1030, 1032, 1040, 1042, 1043, 1044, 1064, 1067, 1068, 1070, 1072, 1076, 1077, 1078, 1079, 1080, 1081, 1083, 1084, 1085, 1086, 1087, 1088, 1092], "object": [3, 4, 12, 29, 31, 34, 39, 40, 41, 42, 48, 49, 84, 124, 128, 129, 130, 132, 135, 137, 163, 168, 170, 258, 296, 359, 491, 497, 611, 662, 716, 717, 719, 779, 781, 812, 858, 860, 861, 867, 868, 872, 877, 878, 879, 880, 881, 882, 883, 884, 885, 887, 889, 894, 895, 900, 903, 911, 914, 915, 916, 917, 918, 919, 920, 921, 928, 939, 941, 956, 961, 962, 963, 964, 967, 970, 974, 981, 983, 995, 1000, 1001, 1002, 1005, 1015, 1017, 1018, 1022, 1024, 1025, 1027, 1029, 1030, 1040, 1043, 1044, 1047, 1064, 1067, 1070, 1072, 1076, 1077, 1078, 1079, 1080, 1081, 1083, 1084, 1085, 1086, 1087, 1088, 1089, 1091], "which": [3, 4, 7, 25, 33, 34, 35, 41, 42, 48, 152, 155, 199, 258, 309, 314, 456, 552, 568, 569, 610, 656, 685, 757, 760, 848, 880, 911, 915, 942, 943, 946, 947, 948, 949, 950, 951, 953, 954, 961, 963, 970, 971, 974, 1005, 1015, 1018, 1027, 1032, 1037, 1038, 1072, 1076, 1077, 1078, 1079, 1080, 1081, 1084, 1086, 1087, 1088, 1089, 1092, 1093], "carri": [3, 611, 1090], "custom": [3, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 40, 42, 48, 197, 757, 760, 761, 861, 863, 866, 870, 871, 873, 874, 877, 897, 911, 956, 962, 969, 973, 1088, 1089], "attribut": [3, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 27, 29, 30, 31, 33, 39, 40, 42, 43, 44, 45, 48, 49, 50, 66, 67, 68, 69, 70, 81, 94, 97, 127, 139, 152, 247, 324, 330, 331, 374, 397, 414, 443, 453, 456, 487, 488, 507, 588, 591, 592, 660, 732, 733, 734, 735, 811, 812, 813, 821, 831, 858, 859, 860, 861, 868, 875, 877, 887, 888, 889, 890, 891, 894, 898, 899, 900, 901, 902, 903, 911, 913, 939, 940, 961, 963, 964, 966, 967, 968, 969, 970, 971, 972, 974, 979, 989, 990, 991, 992, 993, 994, 997, 998, 999, 1010, 1012, 1027, 1064, 1076, 1077, 1078, 1079, 1080, 1081, 1090, 1093], "data": [3, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 34, 35, 42, 48, 54, 60, 71, 72, 73, 82, 84, 85, 90, 93, 96, 116, 123, 124, 125, 131, 152, 153, 155, 156, 157, 158, 159, 161, 163, 168, 169, 170, 173, 176, 180, 199, 209, 215, 217, 218, 222, 234, 235, 236, 237, 238, 239, 240, 248, 249, 250, 251, 253, 255, 256, 269, 292, 293, 309, 310, 314, 327, 335, 344, 345, 346, 349, 350, 351, 354, 355, 356, 371, 372, 375, 377, 382, 385, 386, 387, 401, 408, 420, 467, 490, 499, 568, 569, 574, 575, 576, 577, 578, 583, 611, 614, 617, 623, 624, 625, 627, 628, 629, 630, 631, 647, 648, 649, 651, 652, 653, 656, 657, 667, 668, 681, 694, 703, 721, 722, 723, 724, 760, 761, 781, 782, 793, 797, 798, 804, 808, 816, 874, 875, 880, 897, 898, 902, 911, 932, 939, 940, 943, 944, 963, 969, 970, 971, 973, 990, 992, 994, 997, 999, 1001, 1003, 1004, 1005, 1007, 1008, 1015, 1018, 1042, 1043, 1088, 1089, 1092, 1093], "dedic": [3, 1090], "dict": [3, 29, 33, 34, 35, 39, 40, 42, 48, 82, 85, 97, 100, 106, 107, 114, 115, 116, 128, 129, 130, 133, 134, 136, 154, 167, 168, 169, 170, 188, 191, 197, 208, 211, 212, 243, 258, 259, 262, 267, 269, 278, 287, 293, 297, 301, 303, 304, 305, 307, 309, 310, 311, 313, 314, 315, 316, 317, 318, 319, 320, 324, 327, 332, 344, 345, 346, 349, 350, 351, 354, 355, 356, 371, 372, 375, 377, 380, 381, 382, 383, 397, 434, 435, 437, 457, 467, 473, 474, 475, 492, 495, 514, 552, 553, 569, 571, 572, 574, 575, 576, 577, 578, 610, 611, 616, 620, 621, 622, 624, 625, 626, 627, 628, 629, 630, 631, 637, 654, 662, 667, 675, 681, 684, 695, 696, 697, 719, 736, 739, 747, 748, 753, 762, 764, 776, 780, 782, 797, 798, 808, 809, 812, 816, 818, 821, 831, 833, 877, 900, 911, 928, 962, 970, 971, 986, 990, 992, 994, 997, 999, 1001, 1004, 1008, 1015, 1018, 1027, 1046, 1047, 1055, 1090, 1092], "under": [3, 887, 974, 979, 1090], "__init__": [3, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 29, 30, 31, 33, 34, 35, 39, 40, 42, 43, 44, 48, 49, 50, 66, 67, 68, 69, 70, 81, 127, 139, 232, 247, 258, 330, 331, 359, 374, 414, 443, 453, 507, 588, 591, 592, 660, 732, 733, 734, 735, 811, 812, 813, 858, 859, 860, 861, 863, 864, 865, 866, 867, 868, 869, 870, 871, 872, 873, 874, 875, 877, 878, 879, 880, 881, 882, 883, 884, 885, 887, 888, 889, 890, 891, 894, 897, 898, 899, 900, 901, 902, 903, 911, 924, 939, 940, 941, 942, 943, 944, 945, 946, 947, 948, 949, 950, 951, 953, 954, 956, 961, 962, 963, 969, 970, 971, 972, 989, 990, 991, 992, 993, 994, 995, 996, 997, 998, 999, 1000, 1001, 1002, 1010, 1011, 1012, 1015, 1017, 1018, 1019, 1020, 1021, 1022, 1023, 1024, 1025, 1026, 1027, 1028, 1029, 1030, 1032, 1040, 1042, 1043, 1044, 1064, 1067, 1068, 1070, 1072, 1076, 1077, 1078, 1079, 1080, 1081, 1083, 1084, 1085, 1086, 1087, 1090], "method": [3, 4, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 29, 30, 31, 33, 34, 35, 39, 40, 41, 42, 43, 44, 48, 49, 50, 52, 66, 67, 68, 69, 70, 81, 127, 139, 234, 247, 250, 251, 256, 258, 298, 309, 310, 311, 313, 314, 315, 330, 331, 340, 359, 374, 414, 420, 443, 453, 507, 588, 591, 592, 612, 657, 660, 732, 733, 734, 735, 797, 811, 812, 813, 858, 859, 860, 861, 863, 864, 865, 866, 867, 868, 869, 870, 871, 872, 873, 874, 875, 877, 878, 879, 880, 881, 882, 883, 884, 885, 887, 888, 889, 890, 891, 894, 897, 898, 899, 900, 901, 902, 903, 911, 924, 939, 940, 941, 942, 943, 944, 945, 946, 947, 948, 949, 950, 951, 953, 954, 956, 961, 962, 963, 969, 970, 971, 972, 989, 990, 991, 992, 993, 994, 995, 996, 997, 998, 999, 1000, 1001, 1002, 1010, 1011, 1012, 1015, 1017, 1018, 1019, 1020, 1021, 1022, 1023, 1024, 1025, 1026, 1027, 1028, 1029, 1030, 1032, 1040, 1042, 1043, 1044, 1064, 1067, 1068, 1070, 1072, 1076, 1077, 1078, 1079, 1080, 1081, 1083, 1084, 1085, 1086, 1087, 1089, 1090, 1092], "serial": [3, 29, 39, 40, 42], "gener": [3, 29, 35, 39, 42, 72, 147, 167, 170, 171, 173, 234, 235, 236, 237, 238, 239, 240, 250, 251, 256, 566, 574, 575, 576, 577, 578, 647, 721, 722, 723, 724, 804, 824, 861, 881, 897, 911, 1015, 1090, 1092, 1093], "json": [3, 29, 39, 40, 42, 168, 169, 269, 626, 816, 911, 1015, 1090], "string": [3, 29, 34, 39, 40, 42, 48, 130, 168, 169, 170, 197, 269, 295, 346, 351, 356, 366, 551, 553, 611, 681, 717, 806, 808, 812, 818, 821, 831, 858, 877, 933, 939, 956, 961, 969, 970, 975, 1001, 1015, 1018, 1022, 1025, 1030, 1064, 1090], "full": [3, 29, 33, 39, 42, 91, 178, 234, 236, 238, 240, 258, 345, 350, 355, 571, 572, 748, 808, 847, 1015, 1079, 1080, 1088, 1089, 1092], "content": [3, 29, 39, 42, 178, 285, 448, 552, 677, 697, 748, 816, 861, 911, 939, 1018, 1089, 1091, 1092], "without": [3, 4, 29, 39, 42, 48, 152, 738, 858, 911, 914, 939, 1088, 1093], "ani": [3, 29, 39, 42, 48, 169, 170, 197, 309, 314, 551, 553, 621, 848, 933, 961, 964, 967, 969, 970, 980, 1027, 1072, 1088, 1089, 1092, 1093], "whitespac": [3, 29, 39, 42], "line": [3, 29, 39, 42, 84, 85, 170, 249, 250, 251, 253, 255, 256, 812, 1076, 1077, 1078, 1079, 1080, 1081, 1090], "break": [3, 29, 39, 42, 420], "return": [3, 25, 29, 30, 34, 35, 39, 40, 42, 43, 44, 48, 50, 60, 66, 67, 68, 69, 70, 71, 72, 73, 74, 81, 82, 83, 84, 85, 87, 88, 90, 91, 93, 94, 97, 100, 102, 104, 106, 107, 108, 112, 114, 115, 116, 117, 123, 124, 125, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 139, 143, 146, 147, 148, 152, 153, 154, 155, 156, 157, 158, 160, 161, 163, 170, 171, 173, 188, 191, 197, 205, 206, 208, 209, 211, 212, 215, 216, 217, 218, 228, 229, 234, 235, 236, 237, 238, 239, 240, 243, 245, 247, 248, 252, 254, 258, 259, 260, 261, 262, 263, 265, 266, 267, 269, 278, 279, 280, 281, 285, 292, 293, 295, 296, 297, 298, 301, 303, 304, 305, 309, 310, 311, 313, 314, 315, 317, 318, 319, 320, 324, 327, 330, 331, 332, 333, 344, 345, 349, 350, 354, 355, 366, 370, 371, 372, 374, 375, 377, 380, 381, 382, 386, 387, 397, 404, 405, 407, 408, 414, 432, 434, 435, 436, 437, 439, 443, 448, 453, 455, 456, 458, 467, 487, 488, 490, 495, 499, 507, 514, 517, 519, 520, 552, 553, 568, 569, 571, 574, 575, 576, 577, 578, 588, 589, 591, 592, 610, 611, 612, 614, 616, 617, 619, 620, 621, 622, 624, 625, 626, 627, 628, 629, 630, 631, 637, 649, 651, 652, 653, 654, 657, 660, 662, 667, 668, 677, 681, 685, 690, 696, 697, 703, 716, 719, 721, 722, 723, 724, 728, 730, 732, 733, 734, 735, 736, 737, 738, 739, 743, 747, 748, 762, 776, 778, 779, 780, 781, 782, 794, 796, 797, 807, 808, 809, 811, 812, 813, 814, 816, 818, 821, 824, 831, 833, 843, 844, 848, 850, 853, 858, 859, 860, 861, 875, 880, 881, 888, 889, 890, 891, 898, 899, 900, 902, 911, 922, 928, 932, 934, 935, 939, 940, 956, 961, 962, 963, 969, 970, 972, 974, 975, 976, 977, 979, 980, 981, 982, 983, 989, 990, 991, 992, 993, 994, 996, 997, 998, 999, 1001, 1003, 1004, 1005, 1007, 1008, 1010, 1011, 1012, 1015, 1032, 1037, 1046, 1047, 1049, 1052, 1055, 1056, 1062, 1064, 1072, 1076, 1077, 1078, 1079, 1080, 1081, 1089, 1090, 1093], "str": [3, 7, 8, 9, 10, 11, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 29, 34, 35, 39, 40, 42, 48, 66, 68, 69, 70, 82, 84, 85, 90, 91, 92, 93, 94, 100, 112, 114, 117, 123, 124, 125, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 146, 147, 148, 154, 167, 168, 169, 170, 197, 205, 206, 215, 216, 248, 249, 252, 254, 255, 258, 259, 260, 261, 262, 263, 266, 267, 269, 276, 287, 295, 296, 297, 307, 322, 327, 330, 331, 332, 344, 346, 349, 351, 354, 356, 365, 366, 371, 380, 381, 382, 383, 397, 420, 434, 435, 437, 467, 551, 552, 553, 568, 569, 571, 572, 577, 578, 621, 626, 667, 668, 675, 678, 681, 684, 685, 686, 693, 694, 695, 696, 697, 726, 727, 730, 732, 733, 734, 735, 736, 739, 748, 753, 759, 762, 793, 795, 797, 798, 801, 806, 808, 812, 816, 818, 821, 831, 833, 861, 863, 868, 870, 874, 875, 877, 897, 900, 902, 911, 926, 927, 932, 933, 934, 935, 939, 942, 943, 944, 945, 946, 947, 948, 949, 950, 951, 953, 954, 961, 962, 963, 969, 970, 971, 981, 983, 985, 986, 990, 992, 994, 996, 997, 999, 1001, 1003, 1004, 1007, 1008, 1011, 1015, 1018, 1047, 1049, 1055, 1056, 1064], "The": [3, 27, 29, 34, 35, 38, 39, 40, 41, 42, 48, 91, 112, 114, 115, 116, 117, 128, 129, 132, 134, 135, 147, 155, 173, 209, 234, 239, 240, 243, 248, 258, 259, 262, 267, 269, 287, 309, 314, 345, 350, 355, 366, 382, 408, 420, 495, 499, 552, 572, 610, 611, 621, 622, 626, 630, 662, 681, 694, 696, 718, 722, 723, 730, 748, 757, 760, 761, 794, 795, 806, 812, 816, 818, 821, 831, 848, 861, 875, 895, 902, 911, 922, 924, 933, 939, 940, 956, 962, 963, 966, 969, 970, 971, 974, 981, 983, 990, 992, 994, 997, 999, 1003, 1004, 1007, 1008, 1011, 1018, 1027, 1032, 1064, 1068, 1072, 1076, 1077, 1078, 1079, 1080, 1081, 1087, 1088, 1089, 1092, 1093], "update_attr": [3, 29, 39, 42], "updat": [3, 29, 39, 42, 48, 232, 309, 314, 900, 911, 956, 1090, 1092, 1093], "store": [3, 29, 39, 42, 877, 881, 911, 922, 1001, 1002, 1006, 1011, 1015, 1018, 1040, 1064, 1089, 1090, 1092], "here": [3, 29, 39, 41, 42, 48, 116, 163, 209, 269, 408, 610, 626, 956, 969, 970, 1015, 1027, 1072, 1089, 1090, 1093], "ident": [3, 29, 39, 42, 310, 848, 911, 1090], "kei": [3, 29, 39, 40, 42, 48, 82, 85, 91, 93, 97, 106, 114, 128, 129, 130, 134, 146, 154, 170, 197, 262, 267, 269, 278, 293, 297, 303, 304, 305, 309, 310, 311, 313, 314, 315, 316, 317, 318, 319, 320, 332, 344, 346, 349, 351, 354, 356, 371, 372, 380, 382, 434, 435, 437, 467, 495, 514, 552, 553, 569, 571, 572, 574, 575, 576, 577, 578, 610, 611, 612, 616, 621, 662, 667, 681, 697, 762, 764, 776, 782, 808, 809, 812, 818, 821, 831, 833, 858, 861, 877, 880, 888, 889, 890, 891, 900, 911, 932, 933, 939, 962, 970, 971, 990, 992, 994, 997, 999, 1004, 1008, 1018, 1027, 1046, 1047, 1053, 1054, 1064, 1090, 1093], "ar": [3, 29, 33, 34, 38, 39, 40, 42, 48, 82, 84, 85, 93, 106, 114, 116, 117, 123, 124, 125, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 152, 170, 199, 205, 209, 228, 232, 234, 239, 240, 252, 254, 258, 259, 287, 301, 303, 304, 305, 309, 310, 311, 313, 314, 315, 317, 318, 319, 320, 322, 332, 333, 344, 349, 354, 371, 372, 382, 419, 427, 435, 437, 456, 457, 458, 464, 468, 470, 471, 472, 474, 475, 478, 514, 553, 568, 569, 571, 610, 611, 612, 657, 661, 662, 667, 668, 681, 684, 685, 697, 718, 726, 727, 728, 748, 761, 782, 796, 801, 808, 812, 818, 821, 831, 848, 858, 861, 863, 870, 874, 881, 911, 915, 918, 919, 932, 939, 961, 963, 970, 971, 981, 983, 990, 992, 994, 997, 999, 1003, 1004, 1007, 1008, 1015, 1018, 1027, 1032, 1037, 1038, 1064, 1076, 1077, 1078, 1079, 1080, 1081, 1086, 1088, 1089, 1091, 1092, 1093], "merg": [3, 29, 33, 34, 39, 42, 48, 877, 1018, 1027, 1090], "us": [3, 4, 29, 34, 35, 39, 42, 48, 82, 94, 95, 97, 100, 114, 116, 117, 163, 249, 250, 251, 253, 255, 256, 262, 267, 344, 345, 346, 349, 350, 351, 354, 355, 356, 371, 372, 375, 401, 420, 551, 552, 553, 568, 569, 572, 574, 575, 576, 577, 578, 661, 662, 677, 681, 685, 697, 757, 760, 761, 797, 858, 861, 863, 870, 874, 875, 887, 911, 915, 932, 933, 939, 945, 949, 954, 961, 962, 969, 970, 971, 973, 981, 982, 983, 990, 992, 994, 997, 999, 1003, 1004, 1007, 1008, 1011, 1018, 1040, 1064, 1069, 1072, 1076, 1077, 1078, 1079, 1080, 1081, 1082, 1084, 1086, 1087, 1089, 1093], "share": [3, 29, 39, 42, 48, 50, 861, 887, 911, 1090, 1092], "common": [3, 29, 39, 42, 97, 1049, 1052, 1088], "combine_attr": [3, 29, 39, 42], "new": [3, 29, 35, 39, 42, 48, 166, 697, 911, 921, 970, 979, 1027, 1089, 1090, 1092, 1093], "three": [3, 29, 39, 42, 612, 1072], "wai": [3, 29, 39, 40, 42, 48, 197, 314, 316, 346, 351, 356, 620, 621, 622, 697, 808, 812, 818, 821, 831, 863, 870, 874, 969, 1018, 1027, 1090], "an": [3, 29, 34, 39, 40, 42, 48, 91, 92, 93, 94, 133, 136, 250, 251, 256, 262, 267, 269, 344, 346, 349, 351, 354, 356, 377, 401, 412, 441, 454, 551, 552, 553, 571, 572, 610, 616, 617, 622, 624, 625, 627, 628, 629, 631, 654, 697, 739, 808, 812, 818, 821, 831, 858, 860, 875, 888, 889, 890, 891, 900, 902, 911, 921, 933, 961, 963, 969, 970, 974, 981, 990, 992, 994, 996, 997, 999, 1001, 1002, 1005, 1006, 1008, 1015, 1018, 1047, 1049, 1064, 1069, 1072, 1076, 1077, 1078, 1079, 1080, 1081, 1088, 1089, 1093], "call": [3, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 29, 39, 42, 48, 195, 313, 315, 572, 796, 797, 858, 860, 887, 897, 939, 940, 969, 970, 981, 983, 1018, 1027, 1089, 1090], "dictionari": [3, 29, 39, 40, 42, 48, 91, 93, 97, 100, 123, 146, 154, 170, 197, 258, 382, 435, 437, 441, 551, 574, 575, 576, 577, 578, 610, 612, 616, 619, 696, 697, 779, 798, 808, 833, 858, 928, 969, 970, 971, 981, 990, 992, 994, 997, 999, 1004, 1088, 1089], "keyword": [3, 29, 39, 42, 1072, 1090], "argument": [3, 29, 34, 35, 39, 42, 48, 115, 346, 351, 356, 796, 863, 870, 874, 939, 997, 1001, 1008, 1072, 1090], "work": [4, 232, 269, 344, 349, 354, 657, 694, 911, 970, 981, 1041, 1089, 1090, 1093], "from": [4, 12, 29, 33, 34, 35, 39, 40, 42, 48, 58, 60, 61, 71, 72, 73, 82, 83, 85, 87, 88, 90, 95, 106, 107, 108, 110, 112, 114, 115, 116, 117, 123, 124, 125, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 142, 143, 146, 147, 148, 150, 152, 153, 155, 156, 157, 158, 159, 161, 163, 164, 167, 168, 169, 173, 175, 176, 178, 180, 183, 184, 188, 194, 195, 197, 208, 211, 212, 215, 217, 221, 222, 227, 228, 234, 235, 236, 237, 238, 239, 240, 248, 249, 250, 251, 253, 255, 256, 259, 260, 261, 262, 263, 265, 266, 267, 269, 274, 278, 279, 280, 281, 287, 292, 293, 295, 296, 297, 298, 301, 306, 308, 309, 313, 314, 315, 324, 332, 333, 335, 336, 343, 344, 345, 346, 348, 349, 350, 351, 353, 354, 355, 356, 368, 371, 372, 375, 381, 382, 399, 400, 404, 405, 406, 407, 408, 412, 428, 432, 457, 458, 463, 464, 465, 466, 467, 468, 469, 470, 471, 472, 476, 477, 478, 480, 482, 487, 488, 490, 499, 517, 519, 520, 530, 532, 540, 542, 544, 551, 552, 553, 557, 559, 560, 566, 568, 569, 571, 572, 574, 575, 576, 577, 578, 582, 583, 585, 586, 589, 611, 614, 616, 617, 619, 620, 622, 623, 624, 625, 627, 628, 629, 631, 635, 637, 647, 648, 649, 651, 652, 653, 654, 655, 656, 667, 668, 677, 681, 690, 691, 694, 695, 696, 697, 698, 721, 724, 726, 727, 728, 730, 736, 737, 738, 739, 743, 748, 750, 754, 776, 780, 781, 782, 791, 793, 794, 795, 798, 801, 804, 808, 814, 816, 821, 824, 833, 847, 848, 853, 855, 861, 866, 868, 870, 871, 874, 875, 897, 898, 900, 902, 911, 939, 940, 942, 943, 944, 945, 946, 947, 948, 949, 950, 951, 953, 954, 961, 962, 963, 969, 970, 973, 975, 981, 983, 990, 992, 994, 997, 999, 1001, 1003, 1004, 1007, 1008, 1015, 1018, 1027, 1032, 1037, 1042, 1043, 1069, 1076, 1077, 1078, 1079, 1080, 1081, 1086, 1088, 1089, 1092, 1093], "might": [4, 33, 42, 345, 346, 350, 351, 355, 356, 456, 457, 458, 624, 625, 627, 628, 629, 631, 694, 861, 911, 970, 1018, 1027, 1090, 1093], "import": [4, 48, 309, 310, 314, 351, 356, 748, 921, 942, 943, 944, 945, 946, 947, 948, 949, 950, 951, 953, 954, 1089, 1090], "main": [4, 33, 39, 42, 48, 96, 1067, 1089, 1090, 1093], "df": [5, 351, 356, 990, 992, 994, 997, 999, 1008, 1090], "entity_typ": [5, 29, 30, 42, 128, 693, 694, 861, 865, 872, 969, 970, 975, 980, 1090], "data_model": [5, 42, 48, 868, 901, 902, 911], "interaction_typ": [5, 39, 40, 42, 48, 591, 868, 901, 902, 911, 1090], "only_direct": [5, 48], "only_undirect": 5, "only_sign": [5, 42], "only_protein": [5, 430], "effect": [5, 42, 43, 48, 247, 330, 331, 488, 566, 703, 737, 738, 739, 850, 884, 990, 992, 994, 999, 1090], "entiti": [5, 42, 48, 456, 457, 458, 861, 969, 970, 975, 980, 1018, 1025, 1030, 1090, 1092, 1093], "source_ent": 5, "target_ent": 5, "swap_undirect": 5, "true": [5, 33, 34, 40, 42, 48, 60, 87, 88, 91, 93, 115, 116, 125, 163, 164, 175, 209, 231, 249, 255, 269, 287, 327, 340, 372, 385, 386, 387, 419, 420, 435, 467, 505, 544, 568, 569, 574, 575, 576, 577, 578, 617, 621, 637, 648, 649, 652, 670, 671, 684, 685, 705, 713, 715, 716, 718, 743, 748, 757, 760, 768, 769, 770, 784, 812, 816, 818, 820, 821, 822, 823, 826, 827, 830, 831, 834, 835, 858, 861, 868, 875, 906, 939, 940, 941, 943, 945, 947, 949, 951, 954, 956, 961, 963, 965, 966, 969, 970, 981, 982, 983, 990, 992, 994, 997, 999, 1000, 1001, 1002, 1003, 1004, 1007, 1008, 1015, 1018, 1027, 1047, 1056, 1090], "remove_loop": [5, 48], "entities_or": 5, "fals": [5, 33, 34, 35, 39, 40, 42, 48, 52, 71, 72, 73, 91, 93, 94, 114, 115, 117, 144, 152, 163, 164, 171, 178, 190, 209, 215, 217, 218, 234, 235, 236, 237, 238, 239, 240, 245, 249, 250, 251, 253, 255, 256, 261, 263, 266, 269, 292, 293, 301, 306, 308, 311, 340, 344, 349, 354, 419, 430, 458, 467, 505, 544, 552, 568, 569, 571, 574, 575, 576, 577, 578, 600, 617, 630, 662, 665, 678, 690, 691, 696, 697, 721, 722, 723, 724, 739, 748, 785, 796, 797, 816, 821, 833, 843, 844, 858, 864, 868, 872, 880, 885, 898, 906, 911, 922, 939, 942, 943, 944, 946, 947, 948, 949, 950, 951, 953, 954, 956, 961, 963, 969, 970, 981, 982, 983, 990, 992, 994, 997, 999, 1001, 1003, 1004, 1007, 1015, 1018, 1027, 1047, 1049, 1090], "filter": [5, 29, 38, 40, 48, 90, 94, 234, 235, 237, 239, 911, 990, 992, 994, 999, 1090], "frame": [5, 48, 71, 72, 73, 84, 85, 173, 209, 215, 217, 218, 234, 235, 236, 237, 238, 239, 240, 248, 292, 293, 344, 346, 349, 351, 354, 356, 568, 569, 574, 575, 576, 577, 578, 617, 668, 721, 722, 723, 724, 880, 970, 990, 992, 994, 997, 999, 1003, 1008, 1088, 1089, 1092], "name": [7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 29, 34, 35, 40, 42, 48, 70, 73, 82, 83, 90, 91, 92, 93, 94, 97, 100, 108, 117, 125, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 142, 147, 148, 152, 153, 157, 158, 160, 161, 173, 194, 195, 197, 215, 217, 248, 249, 252, 254, 255, 260, 262, 265, 266, 269, 285, 292, 297, 298, 301, 306, 308, 309, 310, 311, 317, 318, 319, 320, 327, 332, 333, 346, 351, 356, 359, 382, 397, 436, 437, 464, 468, 470, 471, 472, 474, 475, 478, 495, 551, 552, 553, 568, 569, 571, 574, 575, 576, 577, 578, 582, 592, 614, 619, 621, 626, 667, 668, 681, 697, 726, 727, 728, 732, 736, 737, 738, 739, 748, 762, 794, 797, 801, 807, 812, 821, 831, 833, 836, 843, 844, 845, 858, 859, 860, 861, 863, 866, 868, 870, 871, 872, 873, 874, 877, 885, 887, 897, 898, 899, 900, 901, 902, 903, 906, 911, 918, 924, 932, 939, 940, 942, 943, 944, 945, 946, 947, 948, 949, 950, 951, 953, 954, 956, 961, 962, 963, 964, 967, 969, 970, 975, 980, 981, 982, 983, 990, 992, 994, 996, 997, 999, 1001, 1003, 1004, 1007, 1008, 1011, 1018, 1027, 1032, 1033, 1037, 1038, 1043, 1047, 1049, 1052, 1055, 1056, 1068, 1088, 1091, 1093], "ncbi_tax_id": [7, 33, 34, 35, 48, 78, 79, 278, 649, 651, 653, 757, 759, 760, 761, 789, 833, 863, 864, 865, 866, 867, 868, 869, 870, 871, 873, 874, 875, 877, 878, 882, 883, 885, 897, 962, 969, 970, 971, 972, 976, 977, 980, 981, 982, 983, 985, 986, 1027, 1032, 1033, 1035, 1037, 1038, 1042, 1043, 1090, 1093], "9606": [7, 29, 33, 42, 48, 78, 79, 82, 87, 88, 90, 91, 92, 93, 104, 114, 117, 121, 122, 123, 124, 125, 128, 129, 130, 131, 132, 133, 134, 135, 136, 146, 147, 148, 178, 180, 181, 186, 201, 202, 203, 211, 212, 224, 225, 231, 248, 249, 252, 254, 255, 278, 279, 281, 289, 290, 300, 301, 309, 310, 311, 312, 322, 425, 430, 435, 444, 497, 498, 499, 505, 514, 516, 517, 518, 519, 520, 532, 533, 534, 535, 536, 537, 538, 549, 580, 582, 621, 622, 637, 649, 651, 653, 657, 667, 668, 675, 715, 716, 726, 727, 741, 742, 743, 744, 746, 747, 748, 751, 757, 759, 760, 761, 772, 784, 785, 789, 812, 815, 818, 821, 823, 826, 827, 830, 831, 834, 835, 838, 839, 840, 841, 842, 843, 844, 845, 863, 864, 868, 874, 875, 877, 878, 882, 883, 885, 897, 961, 962, 964, 965, 966, 967, 980, 990, 992, 994, 997, 999, 1003, 1004, 1007, 1008, 1027, 1042, 1043, 1045, 1047, 1090], "input_method": [7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 34, 35, 867, 897, 898, 1090], "input_arg": [7, 9, 10, 11, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 868, 897, 921], "dump": [7, 694, 695, 697, 698, 793, 897, 932, 969, 1090], "abstractresourc": [7, 911], "A": [7, 28, 29, 34, 35, 38, 40, 42, 48, 84, 91, 93, 97, 107, 115, 116, 128, 129, 130, 132, 133, 134, 135, 136, 137, 194, 195, 197, 215, 228, 243, 245, 248, 249, 250, 251, 253, 255, 256, 258, 269, 287, 295, 296, 297, 332, 333, 345, 350, 355, 381, 435, 436, 437, 467, 568, 569, 616, 619, 620, 622, 626, 662, 668, 681, 696, 737, 748, 780, 781, 807, 808, 809, 812, 818, 821, 831, 833, 877, 900, 902, 921, 932, 961, 962, 969, 970, 974, 984, 990, 992, 994, 997, 999, 1001, 1003, 1004, 1008, 1011, 1015, 1027, 1047, 1064, 1090, 1092, 1093], "inform": [7, 38, 42, 48, 54, 55, 95, 130, 160, 258, 333, 436, 566, 616, 656, 677, 736, 737, 738, 739, 806, 807, 809, 861, 881, 911, 948, 949, 956, 970, 982, 997, 1003, 1004, 1007, 1008, 1018, 1064, 1088, 1093], "callabl": [7, 8, 9, 10, 11, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 35, 167, 269, 675, 858, 897, 911], "input": [7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 34, 35, 48, 868, 872, 875, 897, 970, 981, 990, 992, 994, 997, 999, 1008, 1088, 1089, 1092], "process_method": [7, 8, 9, 10, 11, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24], "yield": [7, 8, 9, 10, 11, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 29, 42, 94, 142, 147, 310, 346, 351, 356, 456, 457, 458, 566, 582, 583, 717, 718, 804, 812, 815, 1022, 1025, 1029, 1030, 1044, 1090], "intera": [7, 8, 9, 10, 11, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 34, 130, 137, 491, 497, 611, 662, 779, 1001, 1090], "instanc": [7, 8, 9, 10, 11, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 26, 29, 33, 34, 35, 40, 42, 48, 309, 314, 794, 877, 882, 911, 922, 924, 939, 940, 954, 956, 965, 969, 970, 974, 979, 981, 990, 992, 994, 997, 999, 1001, 1005, 1006, 1011, 1027, 1032, 1037, 1068, 1072, 1089, 1090, 1093], "load_data": [7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 34, 35, 897], "load": [7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 34, 35, 48, 222, 301, 401, 407, 408, 420, 430, 651, 653, 747, 793, 897, 911, 921, 932, 961, 963, 969, 970, 971, 981, 992, 1001, 1005, 1011, 1042, 1043, 1045, 1047, 1088, 1089, 1092], "_process_method": [7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 897], "set_method": [7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 34, 35, 897], "set": [7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 29, 33, 34, 35, 39, 40, 42, 48, 74, 82, 85, 91, 93, 106, 107, 114, 117, 128, 129, 132, 134, 135, 137, 143, 191, 194, 195, 197, 208, 249, 250, 251, 253, 255, 256, 259, 262, 267, 274, 278, 287, 289, 290, 303, 304, 305, 307, 309, 310, 311, 313, 314, 315, 332, 344, 349, 354, 371, 372, 380, 381, 382, 397, 420, 427, 432, 434, 435, 456, 458, 517, 519, 520, 551, 552, 553, 568, 569, 612, 620, 621, 622, 662, 667, 678, 681, 684, 693, 694, 696, 736, 739, 781, 793, 808, 812, 816, 833, 858, 860, 861, 863, 868, 870, 874, 875, 877, 888, 889, 890, 891, 897, 898, 900, 911, 916, 939, 942, 943, 944, 945, 946, 947, 948, 949, 950, 951, 953, 954, 956, 961, 962, 963, 969, 970, 971, 981, 983, 986, 990, 992, 994, 997, 999, 1001, 1003, 1004, 1007, 1008, 1018, 1027, 1064, 1090, 1092, 1093], "look": [7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 34, 48, 794, 795, 798, 858, 860, 875, 897, 970, 981, 1015, 1044], "up": [7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 48, 250, 251, 256, 310, 314, 456, 457, 458, 748, 794, 795, 798, 858, 860, 897, 969, 970, 981, 1011, 1018, 1040, 1042, 1043, 1044, 1064, 1090], "necessari": [7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 232, 657, 897, 969, 1005, 1018, 1089, 1090], "abstractcomplexresourc": [8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24], "pickle_fil": [12, 33, 48, 961, 965, 966, 1090], "multipl": [12, 34, 39, 42, 93, 115, 249, 250, 251, 253, 255, 256, 346, 351, 356, 420, 962, 970, 983, 1001, 1002, 1018, 1089, 1090, 1093], "paramet": [12, 29, 34, 35, 39, 40, 42, 48, 71, 72, 73, 116, 123, 124, 125, 144, 146, 147, 148, 163, 164, 173, 205, 206, 215, 216, 217, 218, 232, 234, 235, 236, 237, 238, 239, 240, 249, 250, 251, 252, 253, 254, 255, 256, 269, 287, 289, 290, 292, 293, 295, 296, 297, 303, 304, 305, 306, 308, 309, 310, 311, 313, 314, 315, 317, 318, 319, 320, 322, 327, 332, 333, 344, 345, 346, 349, 350, 351, 354, 355, 356, 365, 366, 419, 420, 551, 552, 553, 568, 569, 574, 575, 576, 577, 578, 624, 625, 626, 627, 628, 629, 630, 631, 637, 654, 657, 678, 684, 696, 697, 721, 722, 723, 724, 739, 793, 801, 812, 815, 816, 818, 821, 831, 833, 858, 861, 863, 866, 868, 870, 871, 873, 874, 875, 895, 911, 924, 939, 940, 942, 943, 944, 945, 946, 947, 948, 949, 950, 951, 953, 954, 956, 961, 962, 963, 964, 967, 969, 990, 992, 994, 997, 999, 1001, 1003, 1004, 1007, 1008, 1011, 1015, 1018, 1027, 1032, 1047, 1049, 1064, 1068, 1072, 1088, 1089, 1090], "list": [12, 29, 33, 34, 35, 39, 40, 42, 48, 60, 71, 72, 73, 83, 84, 87, 88, 90, 91, 92, 94, 97, 102, 104, 107, 108, 115, 116, 117, 125, 131, 133, 136, 148, 152, 153, 155, 156, 157, 158, 160, 161, 163, 164, 167, 168, 169, 170, 171, 188, 205, 206, 211, 212, 215, 216, 217, 218, 228, 229, 245, 258, 259, 260, 261, 263, 265, 266, 269, 276, 280, 285, 287, 292, 307, 309, 310, 324, 327, 333, 345, 350, 355, 386, 387, 397, 404, 405, 407, 408, 420, 430, 436, 437, 439, 455, 458, 467, 482, 487, 488, 490, 491, 492, 493, 497, 498, 499, 568, 569, 571, 572, 574, 575, 576, 577, 578, 589, 610, 614, 616, 617, 624, 625, 627, 628, 629, 630, 631, 635, 637, 647, 649, 651, 652, 653, 662, 675, 683, 684, 685, 690, 693, 694, 695, 697, 703, 723, 728, 736, 737, 738, 743, 748, 754, 756, 757, 759, 760, 761, 762, 776, 781, 782, 796, 797, 801, 807, 808, 812, 816, 818, 821, 831, 847, 848, 850, 853, 860, 861, 874, 875, 877, 880, 900, 911, 939, 961, 962, 963, 969, 970, 978, 984, 990, 992, 994, 997, 999, 1000, 1001, 1003, 1004, 1007, 1008, 1011, 1015, 1018, 1027, 1032, 1033, 1038, 1064, 1089, 1090, 1092, 1093], "thi": [12, 27, 29, 33, 39, 40, 42, 48, 82, 85, 87, 88, 95, 107, 115, 180, 197, 199, 209, 232, 250, 251, 256, 258, 274, 287, 298, 309, 311, 314, 316, 344, 345, 346, 349, 350, 351, 354, 355, 356, 366, 377, 401, 420, 456, 457, 458, 551, 552, 553, 568, 569, 621, 656, 657, 661, 662, 681, 684, 697, 738, 739, 748, 776, 793, 798, 812, 818, 821, 831, 848, 861, 863, 868, 870, 874, 876, 877, 881, 888, 889, 890, 891, 898, 900, 911, 924, 939, 940, 942, 943, 944, 945, 946, 947, 948, 949, 950, 951, 953, 954, 962, 966, 969, 970, 971, 974, 979, 980, 981, 983, 990, 992, 994, 997, 999, 1001, 1002, 1003, 1004, 1007, 1008, 1011, 1015, 1018, 1020, 1022, 1025, 1027, 1030, 1032, 1040, 1044, 1064, 1067, 1068, 1069, 1072, 1076, 1077, 1078, 1079, 1080, 1081, 1082, 1089, 1090, 1092, 1093], "reload": [12, 27, 39, 40, 42, 48, 922, 961, 962, 963, 966, 970, 1090], "level": [12, 39, 40, 42, 46, 48, 215, 217, 247, 249, 250, 251, 253, 255, 256, 317, 318, 319, 320, 332, 346, 351, 356, 553, 574, 575, 576, 577, 578, 610, 662, 754, 766, 782, 812, 821, 831, 861, 881, 888, 889, 890, 891, 911, 921, 928, 942, 943, 944, 945, 946, 947, 948, 949, 950, 951, 953, 954, 961, 962, 963, 970, 1011, 1040, 1089, 1093], "all": [25, 29, 33, 34, 40, 42, 48, 85, 87, 93, 95, 116, 218, 229, 248, 258, 266, 269, 309, 310, 344, 345, 346, 349, 350, 351, 354, 355, 356, 363, 397, 435, 456, 544, 551, 552, 553, 568, 569, 621, 654, 658, 662, 681, 697, 776, 796, 812, 818, 821, 831, 861, 877, 881, 895, 900, 911, 924, 939, 940, 951, 961, 962, 963, 970, 971, 981, 984, 990, 992, 994, 997, 999, 1001, 1008, 1011, 1015, 1018, 1027, 1029, 1032, 1042, 1043, 1045, 1047, 1055, 1068, 1076, 1086, 1089, 1092, 1093], "refer": [25, 29, 33, 38, 39, 42, 43, 48, 87, 88, 115, 116, 245, 260, 311, 340, 374, 382, 414, 420, 437, 443, 507, 551, 552, 553, 557, 582, 616, 690, 812, 818, 821, 831, 868, 877, 880, 895, 911, 914, 915, 918, 919, 953, 954, 1032, 1033, 1038, 1088, 1089, 1093], "mani": [25, 382, 456, 457, 458, 911, 939, 970, 981, 983, 1089, 1090, 1092, 1093], "just": [25, 48, 863, 870, 874, 928, 1022, 1025, 1030, 1088], "like": [25, 42, 48, 168, 170, 345, 350, 355, 624, 625, 627, 628, 629, 630, 631, 861, 875, 900, 928, 1020, 1022, 1025, 1030, 1089, 1090], "uniprot_db": [25, 298], "all_uniprot": [25, 298, 961, 1090], "repres": [25, 28, 29, 34, 38, 39, 41, 42, 48, 74, 84, 85, 132, 133, 135, 136, 142, 163, 258, 265, 266, 332, 436, 571, 654, 728, 807, 861, 876, 877, 900, 970, 1001, 1027, 1043, 1090], "proteom": [25, 35, 970, 999, 1001, 1090], "retriev": [26, 42, 48, 61, 84, 90, 92, 93, 110, 115, 123, 124, 125, 143, 146, 148, 152, 153, 154, 155, 156, 157, 158, 160, 161, 175, 183, 184, 188, 205, 206, 219, 228, 234, 249, 250, 251, 253, 255, 256, 260, 263, 266, 269, 289, 290, 295, 296, 297, 298, 311, 336, 366, 397, 441, 454, 456, 458, 517, 519, 520, 530, 540, 542, 544, 566, 568, 589, 616, 623, 624, 625, 626, 627, 628, 629, 630, 631, 696, 697, 736, 737, 738, 739, 804, 814, 821, 824, 875, 961, 965, 970, 1015, 1090], "current": [26, 42, 48, 55, 269, 311, 888, 889, 890, 891, 908, 956, 965, 969, 997, 1003, 1004, 1007, 1008, 1018, 1069, 1089, 1090, 1093], "initi": [26, 27, 48, 911, 956, 965, 966, 969, 1006, 1018, 1029, 1056, 1090, 1092], "doe": [26, 42, 48, 232, 377, 420, 793, 848, 877, 900, 932, 943, 948, 953, 963, 965, 970, 971, 974, 981, 1005, 1018, 1089, 1090], "exist": [26, 42, 48, 197, 557, 697, 793, 932, 935, 939, 940, 944, 965, 970, 974, 997, 1005, 1008, 1027, 1090], "yet": [26, 33, 48, 467, 965, 970, 1005, 1090, 1093], "assign": [27, 33, 42, 48, 966, 1090, 1093], "db": [27, 107, 108, 287, 858, 966, 1089, 1090], "collect": [28, 38, 40, 42, 48, 49, 53, 95, 191, 234, 262, 267, 269, 344, 349, 354, 406, 551, 552, 553, 911, 1090, 1093], "defin": [28, 34, 35, 41, 42, 48, 345, 350, 355, 610, 620, 757, 760, 761, 858, 861, 875, 877, 911, 970, 971, 1076, 1077, 1078, 1079, 1080, 1081, 1084, 1086, 1087, 1088, 1089, 1093], "its": [28, 42, 48, 131, 197, 260, 298, 310, 401, 620, 662, 812, 818, 821, 831, 848, 932, 935, 946, 947, 961, 963, 964, 967, 970, 974, 981, 983, 1018, 1056, 1062, 1084, 1086, 1087, 1090, 1092], "identifi": [28, 29, 30, 34, 42, 48, 73, 74, 91, 93, 97, 108, 115, 116, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 163, 170, 215, 216, 218, 258, 260, 262, 263, 267, 287, 344, 349, 354, 365, 366, 430, 456, 552, 553, 568, 569, 610, 611, 612, 681, 693, 694, 696, 726, 727, 808, 812, 814, 816, 817, 821, 824, 825, 832, 833, 861, 877, 933, 963, 969, 970, 971, 978, 985, 986, 990, 992, 994, 997, 999, 1001, 1003, 1004, 1007, 1008, 1018, 1022, 1032, 1033, 1037, 1038, 1064, 1088, 1089], "type": [28, 29, 34, 35, 42, 43, 48, 84, 85, 92, 93, 108, 127, 128, 129, 134, 150, 205, 259, 262, 267, 289, 290, 344, 349, 354, 371, 420, 437, 551, 568, 569, 585, 586, 600, 616, 654, 678, 681, 693, 694, 696, 706, 737, 807, 808, 809, 812, 816, 861, 863, 866, 870, 871, 873, 874, 875, 880, 881, 911, 939, 940, 963, 969, 970, 971, 975, 978, 981, 982, 983, 984, 989, 990, 992, 994, 996, 997, 999, 1001, 1003, 1004, 1007, 1008, 1064, 1088, 1089, 1090], "taxon": [28, 29, 30, 34, 42, 48, 285, 654, 833, 970, 990, 992, 994, 997, 999, 1001, 1007, 1052, 1090], "id_typ": [29, 30, 42, 262, 267, 371, 419, 420, 552, 553, 568, 569, 872, 875, 878, 881, 882, 883, 885, 969, 970, 971, 972, 980, 981, 982, 983, 985, 986, 990, 992, 994, 997, 998, 999, 1003, 1004, 1007, 1008, 1022, 1025, 1030, 1032, 1033, 1035, 1037, 1038, 1064, 1090], "attr": [29, 39, 40, 42, 48, 94, 877, 911, 996, 1022, 1025, 1029], "logger": [29, 33, 34, 48, 897, 911, 924, 939, 940, 961, 962, 963, 969, 970, 971, 997, 1002, 1011, 1018, 1027, 1032, 1068], "attributehandl": [29, 39, 42, 1021, 1022, 1023, 1028, 1029], "mirna": [29, 42, 48, 163, 164, 530, 540, 542, 544, 791, 920, 969, 970, 980, 1089, 1092, 1093], "lncrna": [29, 48, 970], "small": [29, 135, 136, 287, 684, 694, 728, 1018, 1068, 1076, 1077, 1078, 1079, 1080, 1081, 1089, 1092], "molecul": [29, 42, 48, 135, 136, 157, 259, 289, 290, 728, 1018, 1089, 1093], "e": [29, 34, 35, 42, 48, 170, 205, 258, 259, 260, 261, 262, 263, 298, 327, 344, 346, 349, 351, 354, 356, 454, 456, 551, 552, 553, 678, 685, 797, 821, 861, 876, 881, 895, 900, 911, 961, 963, 969, 970, 976, 977, 1001, 1015, 1018, 1027, 1043, 1072, 1082, 1084, 1087, 1088, 1089, 1092, 1093], "g": [29, 34, 35, 42, 48, 170, 298, 327, 344, 349, 354, 454, 456, 551, 552, 553, 678, 797, 821, 861, 881, 911, 961, 969, 976, 977, 1001, 1018, 1043, 1089, 1090, 1092, 1093], "uniprot": [29, 34, 35, 42, 48, 82, 108, 114, 128, 132, 134, 135, 146, 147, 163, 199, 278, 279, 281, 295, 296, 297, 301, 306, 308, 309, 310, 311, 332, 372, 412, 427, 428, 432, 435, 441, 475, 491, 514, 517, 519, 520, 568, 569, 610, 612, 616, 621, 622, 654, 657, 658, 662, 667, 675, 715, 724, 728, 764, 776, 780, 782, 794, 795, 798, 845, 868, 872, 874, 875, 878, 881, 882, 883, 885, 898, 961, 962, 964, 967, 969, 970, 973, 976, 977, 981, 983, 990, 992, 994, 997, 999, 1001, 1003, 1004, 1007, 1008, 1010, 1011, 1012, 1025, 1040, 1042, 1043, 1045, 1047, 1062, 1088, 1089, 1092, 1093], "default": [29, 42, 48, 116, 197, 209, 258, 287, 309, 310, 311, 345, 350, 355, 420, 551, 552, 553, 568, 569, 571, 572, 574, 575, 576, 577, 578, 630, 684, 697, 793, 812, 818, 821, 831, 861, 900, 911, 921, 922, 927, 934, 942, 943, 944, 945, 946, 947, 948, 949, 950, 951, 953, 954, 961, 970, 981, 983, 990, 994, 997, 1003, 1004, 1007, 1008, 1015, 1018, 1044, 1047, 1049, 1072, 1076, 1077, 1078, 1079, 1080, 1081, 1082, 1087, 1089, 1090, 1093], "int": [29, 34, 35, 42, 48, 82, 85, 87, 88, 90, 91, 92, 93, 104, 114, 117, 123, 124, 125, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 146, 147, 148, 155, 170, 219, 248, 249, 252, 254, 255, 266, 269, 276, 287, 307, 309, 310, 311, 322, 327, 344, 345, 346, 349, 350, 351, 354, 355, 356, 371, 372, 420, 430, 435, 456, 457, 458, 568, 569, 621, 622, 624, 625, 627, 628, 629, 630, 631, 637, 654, 657, 667, 668, 675, 684, 686, 726, 727, 748, 753, 754, 757, 759, 760, 761, 762, 801, 806, 808, 815, 821, 833, 875, 877, 927, 956, 969, 970, 971, 981, 983, 985, 986, 990, 992, 994, 997, 999, 1000, 1001, 1003, 1004, 1007, 1008, 1011, 1015, 1018, 1047, 1049, 1055, 1064], "ncbi": [29, 34, 35, 42, 48, 87, 88, 104, 248, 249, 252, 254, 255, 266, 287, 306, 308, 309, 310, 311, 370, 371, 372, 399, 400, 474, 568, 569, 621, 622, 637, 654, 657, 667, 668, 685, 748, 801, 814, 815, 833, 875, 877, 895, 969, 970, 971, 981, 983, 990, 992, 994, 997, 999, 1001, 1003, 1004, 1007, 1008, 1047, 1049, 1052, 1062, 1088, 1089, 1093], "human": [29, 34, 35, 42, 85, 93, 114, 115, 116, 117, 123, 124, 125, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 146, 147, 148, 229, 248, 249, 252, 254, 255, 306, 307, 308, 309, 310, 311, 322, 327, 332, 333, 375, 380, 381, 383, 397, 401, 432, 458, 551, 552, 553, 568, 569, 619, 647, 648, 655, 657, 667, 668, 716, 719, 726, 727, 748, 764, 776, 796, 797, 801, 821, 866, 969, 970, 980, 1088, 1089, 1093], "0": [29, 30, 42, 43, 44, 50, 66, 67, 68, 69, 70, 81, 98, 127, 139, 155, 171, 181, 247, 330, 331, 340, 374, 394, 414, 422, 430, 443, 453, 507, 514, 588, 591, 592, 660, 732, 733, 734, 735, 748, 759, 811, 813, 858, 859, 860, 865, 868, 872, 899, 902, 956, 972, 989, 991, 993, 998, 1010, 1012, 1015, 1064, 1068, 1088, 1089, 1090], "non": [29, 35, 48, 205, 557, 911, 963, 970, 981, 983, 1090], "specif": [29, 35, 42, 48, 100, 147, 168, 269, 464, 468, 470, 471, 472, 474, 475, 478, 495, 858, 861, 969, 990, 992, 994, 999, 1052, 1089, 1090, 1093], "metabolit": [29, 48, 343, 344, 345, 346, 355, 365, 366, 368, 1090, 1092], "drug": [29, 48, 68, 69, 71, 72, 73, 106, 107, 108, 155, 158, 215, 216, 217, 218, 219, 228, 258, 259, 260, 261, 263, 265, 266, 267, 397, 463, 466, 467, 468, 469, 471, 473, 477, 566, 574, 736, 737, 738, 739, 804, 970, 1064, 1090, 1092], "compound": [29, 48, 454, 495, 693, 694, 1064, 1090, 1092], "nonetyp": [29, 39, 42, 48, 551, 552, 553, 678, 911], "addit": [29, 34, 48, 232, 252, 254, 420, 571, 572, 812, 818, 821, 831, 911, 939, 961, 969, 1001, 1090, 1093], "make": [29, 33, 48, 911, 924, 939, 940, 947, 953, 954, 970, 981, 983, 997, 1011, 1027, 1032, 1068, 1090, 1093], "label": [29, 40, 42, 48, 49, 50, 81, 82, 83, 84, 85, 566, 738, 739, 808, 809, 863, 870, 875, 888, 889, 890, 891, 902, 911, 924, 932, 939, 940, 962, 969, 970, 976, 977, 978, 997, 1011, 1027, 1032, 1064, 1068, 1072, 1076, 1077, 1078, 1079, 1080, 1081, 1090], "prepend": [29, 48, 911, 924, 939, 940, 997, 1011, 1027, 1032, 1068], "messag": [29, 48, 911, 924, 939, 940, 943, 946, 947, 997, 1011, 1018, 1027, 1032, 1068, 1088, 1093], "send": [29, 48, 420, 911, 924, 939, 940, 997, 1011, 1027, 1032, 1068, 1069], "classmethod": [29, 48, 861, 888, 889, 890, 891, 939, 970], "count_entity_typ": 29, "count": [29, 30, 42, 43, 44, 48, 50, 66, 67, 68, 69, 70, 81, 127, 139, 247, 330, 331, 374, 414, 443, 453, 507, 588, 591, 592, 660, 732, 733, 734, 735, 811, 813, 858, 859, 860, 899, 902, 972, 989, 991, 993, 998, 1010, 1012, 1090], "element": [29, 33, 34, 41, 42, 48, 170, 243, 375, 654, 662, 685, 690, 798, 812, 818, 821, 831, 861, 880, 961, 970, 1001, 1018, 1090], "iter": [29, 35, 40, 48, 90, 287, 759, 812, 821, 824, 831, 881, 900, 911, 956, 963, 970, 990, 992, 994, 997, 999, 1007, 1008, 1018, 1020, 1022, 1025, 1029, 1030, 1042, 1043, 1090], "": [29, 40, 42, 48, 197, 258, 467, 566, 571, 764, 804, 861, 875, 877, 881, 900, 902, 949, 969, 970, 996, 1089, 1090, 1092], "tupl": [29, 30, 34, 40, 42, 43, 44, 48, 50, 70, 71, 72, 73, 74, 81, 82, 83, 87, 88, 90, 93, 94, 108, 117, 125, 127, 128, 129, 131, 132, 134, 135, 137, 139, 142, 143, 147, 148, 152, 153, 155, 156, 157, 158, 160, 161, 163, 164, 167, 173, 197, 205, 206, 215, 216, 217, 218, 228, 234, 235, 236, 237, 238, 239, 240, 247, 258, 259, 260, 261, 263, 265, 266, 269, 278, 280, 285, 292, 293, 303, 304, 305, 307, 309, 310, 311, 313, 314, 315, 317, 318, 319, 320, 327, 332, 333, 346, 351, 356, 374, 380, 381, 397, 414, 430, 434, 436, 443, 453, 467, 482, 495, 507, 514, 551, 553, 566, 568, 569, 571, 572, 582, 583, 588, 589, 591, 592, 612, 614, 617, 621, 654, 660, 662, 675, 717, 721, 722, 723, 724, 728, 736, 737, 738, 739, 748, 754, 756, 757, 759, 760, 761, 764, 782, 804, 807, 811, 812, 813, 816, 818, 821, 831, 847, 848, 850, 853, 859, 861, 877, 880, 881, 899, 900, 933, 939, 961, 963, 970, 971, 972, 975, 996, 997, 998, 1001, 1008, 1010, 1011, 1012, 1015, 1029, 1044, 1072, 1076, 1077, 1078, 1079, 1080, 1081, 1084, 1087, 1090], "One": [29, 42, 48, 82, 85, 93, 94, 205, 206, 287, 684, 697, 798, 821, 831, 970, 990, 992, 994, 997, 999, 1007, 1008, 1011, 1064, 1090], "filter_entity_typ": [29, 861], "keep": [29, 35, 87, 88, 430, 571, 621, 678, 685, 970, 971, 1015, 1089, 1090], "onli": [29, 34, 39, 40, 42, 48, 82, 85, 87, 88, 114, 117, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 152, 191, 197, 205, 248, 249, 250, 251, 253, 255, 256, 261, 263, 269, 322, 327, 344, 345, 346, 349, 350, 351, 354, 355, 356, 372, 427, 430, 435, 551, 553, 637, 678, 685, 776, 812, 818, 821, 831, 861, 863, 870, 874, 900, 911, 918, 921, 922, 939, 940, 948, 953, 963, 969, 970, 971, 981, 982, 983, 990, 992, 994, 997, 999, 1003, 1004, 1007, 1008, 1015, 1027, 1029, 1047, 1056, 1088, 1089, 1092, 1093], "ones": [29, 42, 48, 571, 572, 610, 963, 1011, 1040, 1090], "same": [29, 34, 39, 42, 48, 163, 309, 314, 344, 346, 349, 351, 354, 356, 419, 568, 610, 694, 798, 808, 812, 818, 821, 831, 848, 861, 863, 868, 870, 874, 877, 898, 911, 969, 970, 981, 983, 984, 990, 992, 994, 997, 999, 1008, 1018, 1027, 1090], "otherwis": [29, 39, 40, 42, 48, 310, 435, 437, 571, 610, 816, 858, 900, 970, 1090], "valu": [30, 40, 42, 43, 44, 48, 50, 66, 67, 68, 69, 70, 81, 82, 84, 85, 91, 93, 97, 106, 114, 123, 124, 125, 127, 130, 139, 146, 147, 148, 152, 154, 169, 170, 197, 247, 262, 267, 278, 289, 290, 297, 303, 304, 305, 309, 310, 311, 313, 314, 315, 316, 317, 318, 319, 320, 330, 331, 346, 351, 356, 371, 372, 374, 380, 414, 434, 435, 437, 443, 453, 467, 495, 507, 514, 552, 553, 569, 571, 588, 591, 592, 610, 611, 612, 616, 620, 621, 626, 657, 660, 662, 667, 668, 681, 697, 732, 733, 734, 735, 757, 760, 761, 762, 764, 776, 782, 808, 809, 811, 812, 813, 818, 821, 831, 833, 858, 859, 860, 861, 875, 877, 888, 889, 890, 891, 899, 900, 902, 911, 939, 942, 943, 944, 945, 946, 947, 948, 949, 950, 951, 953, 954, 956, 962, 963, 970, 971, 972, 981, 983, 989, 990, 991, 992, 993, 994, 997, 998, 999, 1003, 1004, 1007, 1008, 1010, 1012, 1015, 1046, 1047, 1077, 1079, 1080, 1090, 1093], "occurr": [30, 43, 44, 50, 66, 67, 68, 69, 70, 81, 127, 139, 180, 247, 330, 331, 374, 414, 443, 453, 507, 588, 591, 592, 660, 732, 733, 734, 735, 811, 813, 858, 859, 860, 899, 902, 972, 989, 991, 993, 998, 1010, 1012], "alia": [30, 43, 44, 50, 66, 67, 68, 69, 70, 81, 127, 139, 247, 330, 331, 374, 414, 443, 453, 507, 588, 591, 592, 660, 732, 733, 734, 735, 811, 813, 858, 859, 860, 899, 902, 972, 989, 991, 993, 998, 1010, 1012, 1071, 1073, 1074], "field": [30, 42, 43, 44, 50, 66, 67, 68, 69, 70, 81, 90, 127, 139, 167, 168, 170, 197, 205, 245, 247, 249, 255, 258, 260, 269, 307, 330, 331, 345, 346, 350, 351, 355, 356, 374, 414, 443, 453, 507, 546, 547, 571, 572, 588, 591, 592, 660, 675, 732, 733, 734, 735, 737, 748, 811, 812, 813, 818, 821, 830, 831, 858, 859, 860, 899, 902, 939, 972, 989, 991, 993, 996, 998, 1010, 1012, 1090, 1093], "2": [30, 43, 48, 50, 68, 69, 70, 81, 127, 139, 170, 247, 301, 330, 331, 374, 414, 443, 456, 507, 514, 588, 591, 592, 616, 660, 690, 733, 734, 735, 753, 754, 811, 813, 858, 859, 899, 900, 902, 972, 989, 993, 998, 1010, 1012, 1015, 1072, 1084, 1087, 1088], "1": [30, 34, 42, 43, 44, 48, 50, 66, 67, 68, 69, 70, 81, 87, 88, 127, 139, 247, 330, 331, 335, 336, 374, 414, 432, 443, 507, 568, 569, 588, 591, 592, 660, 732, 733, 734, 735, 754, 811, 813, 858, 859, 860, 866, 868, 870, 871, 873, 878, 881, 882, 883, 885, 899, 902, 956, 970, 972, 981, 983, 989, 993, 994, 997, 998, 1001, 1003, 1004, 1007, 1008, 1010, 1012, 1015, 1044, 1064, 1068, 1088, 1090, 1093], "index": [30, 43, 44, 50, 66, 67, 68, 69, 70, 73, 81, 127, 139, 146, 148, 209, 247, 330, 331, 374, 414, 443, 453, 507, 544, 585, 586, 588, 591, 592, 660, 732, 733, 734, 735, 811, 813, 858, 859, 860, 899, 902, 972, 989, 991, 993, 998, 1010, 1012, 1090], "start": [30, 43, 44, 48, 50, 66, 67, 68, 69, 70, 81, 127, 139, 247, 330, 331, 374, 414, 443, 453, 507, 551, 553, 588, 591, 592, 610, 620, 660, 732, 733, 734, 735, 811, 813, 858, 859, 860, 878, 882, 899, 902, 972, 989, 991, 993, 998, 1010, 1012, 1015, 1089, 1090, 1092], "stop": [30, 43, 44, 50, 66, 67, 68, 69, 70, 81, 127, 139, 247, 330, 331, 374, 414, 443, 453, 507, 588, 591, 592, 660, 732, 733, 734, 735, 811, 813, 858, 859, 860, 899, 902, 942, 946, 972, 989, 991, 993, 998, 1010, 1012, 1090], "9223372036854775807": [30, 43, 44, 50, 66, 67, 68, 69, 70, 81, 127, 139, 247, 330, 331, 374, 414, 443, 453, 507, 588, 591, 592, 660, 732, 733, 734, 735, 811, 813, 858, 859, 860, 899, 902, 972, 989, 991, 993, 998, 1010, 1012], "first": [30, 42, 43, 44, 48, 50, 66, 67, 68, 69, 70, 81, 127, 139, 197, 247, 258, 292, 330, 331, 344, 345, 346, 349, 350, 351, 354, 355, 356, 374, 414, 443, 453, 507, 568, 569, 588, 591, 592, 610, 619, 620, 622, 660, 662, 696, 732, 733, 734, 735, 811, 813, 858, 859, 860, 874, 899, 902, 922, 969, 970, 972, 981, 983, 989, 991, 993, 998, 1010, 1012, 1015, 1018, 1047, 1089, 1090, 1092], "rais": [30, 43, 44, 50, 66, 67, 68, 69, 70, 81, 127, 139, 197, 247, 330, 331, 374, 414, 443, 453, 507, 588, 591, 592, 660, 732, 733, 734, 735, 811, 812, 813, 858, 859, 860, 899, 900, 902, 972, 989, 991, 993, 998, 1010, 1012], "valueerror": [30, 43, 44, 50, 66, 67, 68, 69, 70, 81, 127, 139, 247, 330, 331, 374, 414, 443, 453, 507, 588, 591, 592, 660, 732, 733, 734, 735, 811, 813, 858, 859, 860, 899, 902, 972, 989, 991, 993, 998, 1010, 1012], "present": [30, 42, 43, 44, 48, 50, 66, 67, 68, 69, 70, 74, 81, 127, 139, 247, 287, 330, 331, 374, 414, 443, 453, 507, 588, 591, 592, 660, 732, 733, 734, 735, 811, 813, 858, 859, 860, 881, 899, 900, 902, 972, 989, 991, 993, 998, 1010, 1012, 1089, 1090], "3": [30, 43, 48, 50, 68, 69, 70, 127, 139, 170, 245, 247, 292, 324, 330, 331, 374, 414, 443, 456, 507, 588, 591, 660, 735, 811, 812, 813, 818, 821, 831, 858, 902, 998, 1010, 1012, 1067, 1088, 1089, 1090], "input_param": [33, 34, 35], "exclud": [33, 48, 82, 85, 87, 88, 116, 194, 195, 551, 553, 759, 858, 1090], "map_by_orthology_from": [33, 34], "trace": [33, 34, 35, 1018], "orthology_only_swissprot": [33, 34], "ptm_orthology_strict": [33, 34], "nonhuman_direct_lookup": [33, 35], "inputarg": [33, 34, 35], "doc": [33, 42, 48, 1088, 1092], "written": [33, 1015, 1090], "assign_to_network": 33, "pa": [33, 48, 921, 942, 943, 944, 945, 946, 947, 948, 949, 950, 951, 953, 954, 1090], "enzym": [33, 34, 35, 39, 40, 211, 212, 292, 293, 443, 880, 911, 1088, 1089, 1092], "substrat": [33, 34, 35, 211, 212, 386, 443, 492, 637, 880, 911, 1088, 1089, 1092], "edg": [33, 42, 48, 487, 488, 1072, 1088], "py": [33, 42, 48, 911], "legaci": [33, 48, 1088], "build_list": 33, "request": [33, 42, 94, 269, 278, 279, 281, 287, 420, 571, 684, 939, 940, 969, 1090, 1093], "contain": [33, 40, 42, 48, 100, 173, 243, 258, 269, 333, 345, 350, 355, 377, 412, 427, 552, 620, 685, 737, 760, 766, 798, 848, 861, 902, 1015, 1018, 1069, 1076, 1077, 1078, 1079, 1080, 1081, 1089, 1090, 1093], "redund": [33, 42, 963, 1090], "later": [33, 40, 42, 779, 969, 1018, 1090], "uniqu": [33, 42, 48, 50, 880, 933, 1018, 1090, 1093], "organis": [33, 900], "pair": [33, 34, 42, 48, 72, 173, 197, 430, 456, 482, 557, 569, 619, 620, 622, 782, 815, 816, 881, 900, 939, 990, 992, 994, 997, 999, 1003, 1007, 1090, 1093], "order": [33, 42, 48, 996, 1018, 1027, 1042, 1043, 1090, 1093], "effici": [33, 1018, 1090], "compil": [33, 82, 1090, 1091], "each": [33, 39, 40, 42, 48, 94, 107, 108, 115, 116, 117, 131, 132, 133, 135, 136, 144, 167, 170, 258, 260, 265, 345, 346, 350, 351, 355, 356, 381, 420, 436, 437, 456, 571, 610, 612, 616, 620, 630, 657, 667, 668, 728, 807, 812, 928, 962, 970, 971, 1015, 1018, 1027, 1089, 1090, 1092, 1093], "thei": [33, 38, 42, 435, 748, 860, 970, 1027, 1089, 1090, 1092], "agre": [33, 1090], "except": [33, 42, 48, 287, 684, 990, 992, 994, 997, 999, 1008, 1093], "isoform": [33, 34, 654, 878, 880, 882, 883, 885, 1001, 1002, 1044, 1045, 1047, 1090, 1093], "id_type_enzym": [34, 35, 898, 1090], "id_type_substr": [34, 35, 898], "ptmorthologi": 34, "enzymesubstrateprocessor": 34, "unifi": 34, "subsequ": [34, 1089, 1090], "them": [34, 42, 48, 467, 551, 748, 911, 970, 982, 992, 999, 1015, 1089, 1090, 1093], "one": [34, 39, 40, 41, 42, 48, 82, 84, 93, 171, 197, 199, 215, 269, 309, 310, 311, 317, 318, 319, 320, 345, 346, 350, 351, 355, 356, 382, 419, 420, 436, 456, 457, 458, 552, 624, 625, 627, 628, 629, 630, 631, 654, 657, 685, 748, 795, 798, 806, 807, 812, 821, 831, 848, 863, 866, 870, 871, 873, 874, 875, 877, 881, 895, 911, 961, 963, 969, 970, 971, 981, 982, 983, 990, 992, 994, 997, 999, 1001, 1002, 1003, 1004, 1007, 1011, 1015, 1018, 1027, 1042, 1043, 1047, 1064, 1072, 1079, 1080, 1089, 1093], "differ": [34, 42, 346, 351, 356, 812, 860, 875, 877, 911, 928, 969, 970, 981, 1018, 1089, 1090, 1092, 1093], "organ": [34, 35, 38, 48, 81, 82, 83, 85, 87, 88, 90, 91, 92, 93, 104, 114, 116, 117, 121, 122, 123, 124, 125, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 146, 147, 148, 178, 180, 181, 186, 201, 202, 203, 211, 212, 224, 225, 231, 248, 249, 252, 254, 255, 266, 278, 279, 281, 285, 289, 290, 300, 301, 306, 307, 308, 309, 310, 311, 312, 322, 327, 332, 333, 340, 371, 372, 425, 430, 444, 463, 464, 465, 466, 468, 469, 470, 471, 472, 473, 474, 475, 476, 477, 478, 497, 498, 499, 505, 514, 516, 517, 518, 519, 520, 532, 533, 534, 535, 536, 537, 538, 549, 551, 552, 553, 568, 569, 580, 582, 611, 621, 622, 637, 638, 647, 648, 655, 657, 667, 668, 675, 715, 716, 726, 727, 741, 742, 743, 744, 746, 747, 748, 751, 762, 772, 784, 785, 797, 801, 812, 815, 818, 821, 823, 826, 827, 830, 831, 833, 834, 835, 838, 839, 840, 841, 842, 843, 844, 845, 875, 877, 898, 961, 964, 965, 966, 967, 969, 970, 971, 981, 983, 990, 992, 994, 997, 999, 1001, 1002, 1003, 1004, 1007, 1008, 1032, 1033, 1037, 1038, 1042, 1043, 1045, 1047, 1049, 1088, 1089, 1092, 1093], "chosen": 34, "For": [34, 35, 42, 48, 84, 91, 93, 170, 205, 249, 250, 251, 253, 255, 256, 551, 552, 553, 572, 683, 808, 809, 812, 818, 821, 831, 843, 844, 861, 875, 887, 895, 911, 932, 961, 962, 963, 970, 976, 977, 980, 990, 992, 994, 999, 1011, 1015, 1018, 1027, 1052, 1055, 1056, 1062, 1064, 1089, 1090, 1093], "exampl": [34, 38, 48, 314, 351, 356, 812, 818, 821, 831, 887, 921, 942, 943, 944, 945, 946, 947, 948, 949, 950, 951, 953, 954, 961, 1018, 1027, 1064, 1088, 1089], "want": [34, 42, 48, 949, 954, 1088, 1089, 1093], "mous": [34, 85, 114, 115, 116, 117, 123, 124, 125, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 146, 147, 148, 252, 254, 322, 332, 333, 553, 568, 569, 657, 667, 668, 726, 727, 748, 801, 1088, 1089, 1090], "rat": [34, 85, 657, 748, 1088], "To": [34, 661, 662, 779, 875, 1015, 1090, 1093], "get": [34, 100, 309, 311, 314, 412, 875, 900, 939, 963, 1015, 1018, 1088, 1090, 1093], "origin": [34, 42, 163, 209, 248, 456, 848, 898, 969, 970, 981, 983, 1018, 1088, 1089, 1092], "themselv": 34, "have": [34, 42, 48, 90, 311, 551, 553, 757, 760, 861, 875, 911, 918, 943, 949, 954, 961, 969, 970, 990, 992, 994, 999, 1015, 1018, 1027, 1089, 1090, 1092, 1093], "both": [34, 42, 48, 74, 128, 309, 310, 311, 621, 738, 739, 760, 821, 845, 848, 939, 969, 1089, 1090, 1093], "whatmor": 34, "singl": [34, 42, 48, 96, 100, 107, 115, 215, 216, 346, 351, 356, 456, 457, 458, 685, 877, 961, 962, 963, 970, 977, 990, 992, 994, 997, 999, 1001, 1008, 1088], "enzymesubstrateaggreg": [34, 1090], "should": [34, 39, 40, 48, 82, 85, 96, 152, 300, 301, 310, 312, 428, 779, 798, 858, 861, 877, 911, 962, 969, 970, 981, 1018, 1076, 1077, 1078, 1079, 1080, 1081, 1089, 1090, 1093], "bool": [34, 35, 40, 42, 48, 60, 71, 72, 73, 87, 88, 91, 93, 94, 114, 115, 116, 117, 125, 144, 152, 163, 164, 209, 215, 217, 218, 234, 235, 236, 237, 238, 239, 240, 249, 250, 251, 253, 255, 256, 261, 263, 266, 269, 287, 292, 293, 311, 327, 344, 349, 354, 372, 375, 420, 430, 435, 458, 467, 552, 568, 569, 571, 574, 575, 576, 577, 578, 617, 621, 626, 630, 637, 662, 685, 696, 697, 721, 722, 723, 724, 739, 748, 757, 760, 797, 816, 821, 833, 858, 861, 874, 875, 911, 961, 963, 969, 970, 981, 983, 990, 992, 994, 997, 999, 1000, 1001, 1003, 1004, 1007, 1008, 1015, 1018, 1047, 1049, 1056], "swissprot": [34, 312, 372, 621, 821, 833, 840, 841, 842, 843, 844, 845, 874, 875, 969, 970, 973, 981, 990, 992, 994, 997, 999, 1003, 1004, 1007, 1008, 1047, 1089, 1090], "trembl": [34, 821, 843, 844, 845, 875, 969, 970, 973, 981, 1089, 1090], "those": [34, 205, 685, 961, 970, 992, 999, 1027, 1090], "homolog": [34, 992, 999, 1090, 1093], "ptm": [34, 35, 39, 40, 243, 386, 654, 656, 747, 880, 884, 911, 915, 916, 1001, 1090, 1092, 1093], "phosphosit": [34, 35, 677, 1001, 1090, 1092, 1093], "do": [34, 48, 557, 696, 798, 911, 948, 951, 953, 970, 1088, 1093], "residu": [34, 199, 412, 427, 654, 657, 662, 785, 876, 880, 881, 883, 1001, 1011, 1013, 1044, 1090], "offset": [34, 269, 412, 427, 428, 610, 1001, 1010, 1011, 1044, 1090], "see": [34, 42, 48, 84, 91, 115, 178, 249, 250, 251, 253, 255, 256, 344, 345, 349, 350, 354, 355, 678, 796, 807, 808, 809, 812, 818, 821, 831, 861, 949, 961, 969, 970, 981, 982, 983, 1064, 1069, 1072, 1084, 1086, 1087, 1089, 1090, 1093], "further": [34, 54, 197, 427, 456, 797, 858, 1011, 1015, 1018, 1040, 1088, 1090, 1093], "option": [34, 39, 42, 48, 93, 137, 309, 310, 344, 346, 349, 351, 354, 356, 366, 456, 457, 458, 697, 969, 970, 975, 981, 983, 1011, 1015, 1018, 1044, 1047, 1090, 1093], "ptm_orthologi": [34, 1001], "creat": [34, 35, 39, 40, 42, 48, 345, 350, 355, 780, 868, 911, 928, 939, 956, 961, 969, 970, 971, 974, 979, 983, 990, 992, 994, 997, 999, 1001, 1003, 1004, 1005, 1006, 1018, 1027, 1089], "phosphoryl": [34, 648, 654, 655, 1001, 1090], "site": [34, 199, 648, 654, 655, 656, 657, 658, 818, 848, 1001, 1043, 1090, 1092], "tabl": [34, 48, 170, 221, 262, 267, 278, 279, 280, 281, 335, 336, 344, 349, 354, 371, 372, 412, 432, 490, 491, 492, 493, 532, 569, 614, 635, 654, 678, 690, 695, 697, 698, 748, 764, 794, 795, 798, 847, 853, 861, 863, 866, 870, 871, 874, 875, 969, 970, 971, 984, 985, 986, 990, 992, 994, 999, 1001, 1005, 1088, 1089, 1091, 1092], "phosphositeplu": [34, 648, 654, 655, 656, 657, 1001], "In": [34, 42, 48, 232, 309, 310, 311, 456, 457, 458, 654, 657, 662, 764, 900, 911, 928, 939, 970, 981, 983, 992, 999, 1001, 1015, 1018, 1056, 1089, 1090], "result": [34, 42, 48, 94, 144, 170, 266, 269, 309, 310, 313, 315, 344, 346, 349, 351, 354, 356, 435, 621, 654, 798, 812, 861, 943, 949, 950, 951, 954, 963, 969, 970, 982, 1001, 1015, 1018, 1064, 1090], "follow": [34, 42, 205, 206, 245, 654, 737, 900, 939, 1001, 1089, 1090], "6": [34, 43, 50, 68, 127, 139, 247, 331, 414, 430, 443, 456, 654, 660, 813, 848, 858, 1001, 1088, 1090], "letter": [34, 42, 287, 309, 310, 311, 317, 318, 319, 320, 654, 1001, 1018, 1090], "code": [34, 91, 163, 164, 306, 308, 309, 310, 311, 317, 318, 319, 320, 351, 356, 654, 809, 970, 981, 983, 1001, 1084, 1086, 1087, 1090, 1092], "modif": [34, 97, 654, 876, 880, 1001, 1027, 1043, 1090], "set_inputarg": [34, 35], "select": [34, 35, 42, 48, 116, 861, 940, 961, 1001, 1002, 1032, 1088, 1093], "x": [34, 48, 1001, 1076, 1077, 1078, 1079, 1080, 1081, 1084, 1086, 1087], "return_str": [34, 1001], "anyth": [34, 933, 942, 945, 963, 970, 1001, 1072, 1084, 1087, 1090], "notat": [34, 1001, 1090], "amino": [34, 610, 782, 1001, 1090], "acid": [34, 610, 782, 1001, 1018, 1090], "offest": [34, 1001], "p00533_s231": [34, 1001], "domainmotif": [34, 491, 497, 1001, 1090], "domain": [34, 243, 420, 427, 497, 498, 499, 620, 766, 780, 781, 798, 848, 876, 880, 1001, 1042, 1043, 1090, 1093], "typ": [34, 881, 883, 1001, 1090], "translate_sit": [34, 1001], "re": [34, 48, 784, 1001], "source_organ": [34, 90, 1001], "ortholog": [34, 568, 569, 629, 630, 657, 990, 992, 994, 997, 999, 1001, 1003, 1004, 1007, 1008, 1089, 1090], "allow_mixed_organ": 35, "organisms_support": [35, 898], "sequencecontain": [35, 1001, 1090], "variou": [35, 48, 180, 260, 285, 346, 351, 356, 833, 1052, 1075, 1089, 1090], "over": [35, 343, 348, 353, 812, 824, 1029, 1042, 1043, 1092], "obtain": [35, 42, 371, 372, 412, 750, 780, 781, 796, 875, 895, 992, 999, 1090], "either": [35, 39, 42, 84, 124, 128, 209, 345, 456, 577, 621, 681, 697, 808, 861, 877, 900, 939, 963, 970, 980, 1015, 1018, 1064, 1090, 1093], "format": [35, 48, 61, 82, 97, 124, 163, 209, 366, 552, 649, 652, 685, 716, 717, 719, 836, 956, 970, 1052, 1069, 1092, 1093], "lookup": [35, 571, 572, 1005], "ambigu": [35, 42, 970, 982, 1090], "map": [35, 40, 91, 93, 173, 216, 218, 382, 383, 412, 441, 532, 568, 569, 610, 612, 619, 620, 621, 622, 662, 696, 721, 724, 778, 780, 781, 815, 816, 863, 870, 874, 875, 900, 1011, 1040, 1076, 1077, 1078, 1079, 1080, 1081, 1084, 1086, 1087, 1089, 1090, 1092], "mismatch": 35, "mapper": [35, 974, 979, 983, 1090], "If": [35, 39, 40, 42, 48, 115, 128, 170, 197, 252, 254, 258, 266, 309, 310, 313, 315, 437, 467, 551, 552, 553, 568, 569, 571, 574, 575, 576, 577, 578, 621, 661, 662, 697, 748, 780, 781, 793, 812, 845, 858, 861, 875, 877, 881, 900, 961, 962, 963, 969, 970, 971, 981, 984, 990, 992, 994, 999, 1015, 1018, 1089, 1090, 1093], "direct": [35, 42, 43, 48, 173, 487, 576, 621, 647, 861, 868, 916, 919, 961, 963, 970, 1076, 1077, 1078, 1079, 1080, 1081, 1088], "target": [35, 42, 48, 58, 90, 107, 158, 163, 164, 173, 209, 247, 248, 249, 250, 251, 253, 255, 256, 258, 266, 371, 372, 530, 540, 542, 544, 569, 574, 575, 576, 577, 578, 582, 583, 654, 657, 681, 850, 868, 884, 920, 963, 969, 970, 971, 981, 990, 992, 994, 997, 998, 999, 1001, 1003, 1004, 1007, 1008, 1064, 1076, 1077, 1078, 1079, 1080, 1081, 1090, 1092, 1093], "speci": [35, 371, 372, 657, 796, 797, 1090, 1092], "arg": [35, 42, 48, 82, 84, 85, 87, 88, 91, 92, 93, 94, 100, 106, 107, 108, 112, 114, 115, 116, 117, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 152, 155, 168, 194, 195, 197, 209, 248, 258, 259, 260, 261, 262, 263, 266, 267, 269, 371, 372, 375, 435, 437, 464, 467, 468, 470, 471, 472, 474, 475, 478, 571, 572, 617, 621, 622, 662, 667, 668, 681, 726, 727, 730, 748, 754, 757, 760, 761, 780, 781, 806, 808, 848, 858, 861, 902, 932, 963, 969, 970, 971, 981, 983, 990, 992, 994, 996, 999, 1011, 1064], "forward": 35, "support": [38, 39, 40, 42, 48, 114, 117, 146, 147, 148, 252, 254, 309, 314, 322, 427, 667, 668, 877, 992, 1089, 1090, 1092], "relationship": [38, 39, 40, 74, 191, 266, 314, 316, 332, 381, 568, 589, 880, 990, 992, 994, 997, 999, 1003, 1004, 1007, 1088, 1089], "hold": [38, 616, 1015], "literatur": [38, 39, 42, 48, 249, 250, 251, 253, 255, 256, 404, 405, 406, 505, 530, 540, 542, 557, 559, 560, 582, 651, 911, 914, 918, 919, 1088, 1093], "oper": [38, 812, 818, 821, 831, 860, 861, 961, 1090], "avail": [38, 83, 84, 85, 91, 92, 95, 97, 107, 123, 124, 125, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 197, 248, 249, 255, 262, 267, 332, 333, 551, 552, 553, 571, 572, 617, 649, 651, 652, 653, 694, 726, 727, 748, 801, 812, 818, 821, 831, 848, 858, 875, 970, 981, 983, 1015, 1064, 1089, 1090, 1093], "complex": [39, 40, 42, 48, 60, 123, 128, 129, 130, 131, 132, 135, 137, 144, 163, 175, 176, 178, 336, 377, 415, 456, 457, 458, 611, 712, 727, 728, 753, 760, 761, 778, 779, 780, 812, 818, 821, 831, 962, 970, 980, 981, 983, 1027, 1029, 1088, 1089, 1092], "consist": [39, 48, 630, 860, 956, 1089, 1090], "two": [39, 42, 48, 197, 243, 258, 344, 349, 354, 375, 568, 569, 610, 612, 696, 848, 861, 970, 983, 990, 992, 994, 997, 999, 1003, 1072, 1076, 1077, 1078, 1079, 1080, 1081, 1089, 1090], "part": [39, 107, 116, 152, 249, 255, 419, 761, 911, 970, 1090, 1092, 1093], "resourceattribut": [39, 898, 901], "deriv": [39, 911, 1076, 1086, 1090, 1093], "prefer": [39, 42, 309, 310, 311, 314, 681, 970, 980, 981, 1089, 1090], "pubm": [39, 154, 247, 287, 311, 399, 400, 616, 895, 1030, 1090], "asdict": [39, 40, 42, 990, 992, 994, 999], "represent": [39, 42, 130, 1090], "has_interaction_typ": [39, 40], "via": [39, 40, 42, 48, 898, 899, 901, 902], "ignor": [39, 40, 42, 48, 197, 902, 911, 970, 982, 997, 1003], "primari": [39, 40, 42, 815, 902, 911, 970, 981, 1089, 1090], "consid": [39, 40, 42, 48, 377, 845, 895, 961, 1090], "depend": [39, 42, 93, 345, 350, 355, 1090, 1092], "whether": [39, 42, 48, 60, 152, 327, 420, 685, 797, 861, 1018, 1090], "queri": [40, 41, 42, 48, 53, 94, 269, 287, 303, 304, 305, 309, 310, 311, 313, 314, 315, 317, 318, 319, 320, 419, 420, 467, 572, 621, 622, 626, 630, 662, 684, 793, 812, 818, 821, 831, 875, 969, 1005, 1015, 1064, 1088, 1092], "comprehens": [40, 48, 249, 250, 251, 253, 255, 256, 1015, 1089, 1090, 1092, 1093], "It": [40, 42, 48, 877, 911, 932, 939, 940, 969, 970, 971, 981, 982, 990, 992, 994, 997, 999, 1008, 1069, 1089, 1090, 1093], "possibl": [40, 42, 48, 93, 147, 289, 290, 371, 657, 681, 963, 969, 970, 981, 983, 984, 990, 997, 1003, 1004, 1007, 1008, 1015, 1022, 1025, 1030, 1052, 1088, 1090], "empti": [40, 42, 48, 249, 255, 377, 662, 812, 900, 970, 1089, 1090], "popul": [40, 861, 1090], "show": [40, 42, 48, 365, 698, 939, 969, 1090, 1093], "certain": [40, 42, 48, 568, 569, 939, 940, 994, 997, 1003, 1004, 1007, 1008, 1015, 1088], "ha": [40, 42, 48, 115, 116, 232, 309, 314, 495, 610, 877, 900, 911, 921, 939, 963, 969, 970, 971, 974, 1015, 1018, 1089, 1090, 1092, 1093], "within": [40, 345, 350, 355, 812, 818, 821, 831, 900, 956, 1072, 1084, 1087, 1089, 1090, 1093], "dataset": [40, 42, 48, 82, 83, 84, 85, 94, 107, 115, 116, 124, 147, 178, 234, 235, 236, 237, 238, 239, 240, 343, 344, 345, 346, 368, 404, 405, 574, 575, 576, 577, 578, 655, 656, 738, 739, 748, 848, 868, 900, 901, 903, 911, 915, 921, 927, 1088, 1089], "has_dataset": 40, "given": [40, 42, 48, 365, 412, 427, 574, 575, 576, 577, 578, 621, 657, 881, 900, 934, 961, 970, 982, 1015, 1032, 1037, 1042, 1043, 1072, 1076, 1077, 1078, 1079, 1080, 1081, 1084, 1086, 1087, 1090], "meet": [40, 990, 994], "criteria": [40, 42, 48, 718, 970, 990, 992, 994, 999], "item": [40, 48, 269, 900, 932, 933, 956, 1090], "dict_item": 40, "intern": [40, 130, 137, 491, 611, 662, 779, 914, 915, 916, 917, 918, 919, 920, 921, 969, 970, 981, 983, 1090, 1092], "networkresourcekei": 40, "dict_kei": [40, 1090], "serialize_attr": [40, 42], "top_key_prefix": 40, "extra": [40, 48, 571, 970], "simple_dict": 40, "we": [41, 42, 163, 412, 757, 760, 970, 992, 999, 1027, 1072, 1084, 1087, 1089, 1090, 1091, 1093], "rich": [41, 1089, 1090], "api": [41, 287, 303, 305, 310, 313, 315, 317, 319, 694, 812, 818, 821, 831, 875, 1015, 1089, 1092, 1093], "larg": [41, 205, 407, 408, 456, 457, 458, 718, 916, 939, 940, 1015, 1018, 1089, 1090, 1092, 1093], "reli": [41, 1090], "b": [42, 48, 249, 250, 251, 253, 255, 256, 764, 921, 969, 1027, 1090], "id_type_a": [42, 344, 349, 354, 696, 808, 863, 864, 865, 866, 867, 868, 869, 870, 871, 873, 874, 875, 1090], "id_type_b": [42, 344, 349, 354, 696, 808, 863, 864, 865, 866, 867, 868, 869, 870, 871, 873, 874, 875, 984, 1090], "entity_type_a": [42, 868], "entity_type_b": [42, 868], "taxon_a": [42, 245, 868], "taxon_b": [42, 245, 868], "transcript": [42, 48, 58, 84, 85, 91, 93, 94, 458, 776, 864, 911, 917, 921, 970, 981, 983, 1089, 1093], "regul": [42, 48, 58, 163, 164, 766, 1093], "post": [42, 48, 876, 939, 1043], "evid": [42, 48, 249, 250, 251, 253, 255, 256, 306, 308, 588, 616, 678, 757, 760, 880, 882, 883, 1090, 1092], "partner": [42, 48, 374, 456, 1090, 1093], "detail": [42, 48, 248, 252, 254, 258, 269, 436, 616, 757, 807, 812, 818, 821, 831, 848, 861, 876, 970, 981, 982, 1089, 1090], "alphabet": [42, 1027, 1090], "henc": [42, 377, 969, 1090, 1092, 1093], "becom": 42, "add_evid": 42, "undirect": [42, 918, 1076, 1077, 1078, 1079, 1080, 1081, 1090], "add": [42, 48, 73, 412, 877, 881, 911, 964, 967, 970, 981, 983, 1027, 1089, 1090, 1092, 1093], "direction": [42, 48], "correspond": [42, 48, 91, 260, 683, 778, 780, 812, 821, 831, 888, 889, 890, 891, 900, 962, 970, 976, 990, 992, 994, 999, 1011, 1040, 1090], "modifi": [42, 911, 946], "self": [42, 1015, 1088], "dir": [42, 1090], "networkresourc": [42, 48, 911, 928, 1090], "latter": [42, 243, 346, 351, 356, 611, 875, 970, 1090], "case": [42, 146, 147, 148, 345, 346, 350, 351, 355, 356, 420, 662, 858, 861, 900, 919, 940, 962, 969, 970, 981, 982, 983, 990, 992, 994, 997, 999, 1008, 1015, 1018, 1089, 1090, 1093], "separ": [42, 170, 346, 351, 356, 456, 865, 868, 872, 902, 911, 928, 970, 983, 1027, 1090, 1092], "Or": [42, 48, 1090, 1093], "causal": [42, 1088, 1093], "stimul": [42, 759, 1090], "stimulatori": [42, 1090], "inhibit": [42, 759, 1090], "inhibitori": [42, 1090], "while": [42, 48, 132, 135, 163, 243, 346, 351, 356, 382, 553, 621, 657, 662, 694, 697, 911, 939, 956, 1089, 1090], "unknown": [42, 232, 868, 872, 883, 1090], "neutral": 42, "been": [42, 48, 232, 309, 311, 314, 877, 911, 943, 969, 970, 971, 1018, 1089, 1090, 1092, 1093], "add_sign": 42, "sign": [42, 48, 868, 919], "resource_nam": [42, 48, 858], "ppi": [42, 124, 419, 420, 901, 1089, 1090], "posit": [42, 48, 620, 956, 1011, 1076, 1077, 1078, 1079, 1080, 1081, 1090], "positive_sourc": 42, "neg": [42, 48, 245, 557, 911, 1090], "negative_sourc": 42, "accordingli": 42, "node": [42, 48, 104, 961, 963, 964, 967, 1072], "specifi": [42, 48, 173, 797, 900, 997, 1008, 1077, 1084, 1086, 1087], "wa": [42, 499, 812, 821, 831, 848, 928, 1089, 1090], "pass": [42, 48, 169, 796, 812, 818, 821, 831, 858, 875, 969, 970, 1015, 1090], "alreadi": [42, 48, 346, 351, 356, 694, 798, 911, 921, 963, 969, 1027, 1090], "complex_identifiers_by_data_model": [42, 48], "involv": [42, 199], "match": [42, 48, 104, 435, 970, 981, 983, 990, 994, 997, 1008, 1044, 1090, 1093], "mai": [42, 48, 1018, 1090], "sound": 42, "so": [42, 48, 412, 456, 457, 458, 798, 942, 948, 950, 953, 970, 1018, 1029, 1089, 1090], "onc": [42, 82, 922, 939, 970, 983, 1015, 1089, 1090], "kind": [42, 812, 821, 831, 970, 971, 980, 1090, 1093], "across": [42, 48, 173, 1090], "seri": [42, 209, 970, 980, 1090], "small_molecul": [42, 48, 970, 1090], "return_typ": 42, "altern": [42, 48, 346, 351, 356, 420, 456, 812, 818, 821, 831, 962, 970, 981, 983, 1089, 1090, 1093], "complex_identifiers_by_interaction_typ": [42, 48], "complex_identifiers_by_interaction_type_and_data_model": [42, 48], "complex_identifiers_by_interaction_type_and_data_model_and_resourc": [42, 48], "complex_identifiers_by_refer": [42, 48], "complex_identifiers_by_resourc": [42, 48], "complex_labels_by_data_model": [42, 48], "complex_labels_by_interaction_typ": [42, 48], "complex_labels_by_interaction_type_and_data_model": [42, 48], "complex_labels_by_interaction_type_and_data_model_and_resourc": [42, 48], "complex_labels_by_refer": [42, 48], "complex_labels_by_resourc": [42, 48], "complexes_by_data_model": [42, 48], "complexes_by_interaction_typ": [42, 48], "complexes_by_interaction_type_and_data_model": [42, 48], "complexes_by_interaction_type_and_data_model_and_resourc": [42, 48], "complexes_by_refer": [42, 48], "complexes_by_resourc": [42, 48], "consensu": [42, 1090], "only_interaction_typ": 42, "only_primari": 42, "by_refer": 42, "by_reference_resource_pair": 42, "infer": [42, 115, 116, 796, 797, 1090], "accord": [42, 48, 439, 766, 887, 1015, 1072, 1090], "along": [42, 1090], "major": [42, 657, 1089, 1090, 1092, 1093], "un": 42, "consensus_edg": [42, 1090], "count_complex_identifi": [42, 48], "count_complex_label": [42, 48], "count_complex": [42, 48, 1090], "count_data_model": [42, 48], "model": [42, 48, 91, 93, 95, 96, 97, 100, 911], "count_degrees_direct": [42, 48], "connect": [42, 697, 1027, 1072, 1089, 1092, 1093], "concern": 42, "incom": [42, 48], "degre": 42, "activ": [42, 48, 152, 199, 261, 263, 759, 914, 1027, 1093], "around": [42, 48, 258, 620, 621, 622, 900, 939, 956, 971, 1088, 1089], "mode": [42, 48, 881, 1090], "IN": [42, 48], "out": [42, 48, 1015, 1089, 1090], "outgo": [42, 48], "respect": [42, 48, 303, 304, 305, 309, 310, 311, 313, 314, 315, 317, 318, 319, 320, 1090], "overwrit": [42, 911], "count_degrees_directed_in": [42, 48], "count_degrees_directed_out": [42, 48], "count_degrees_neg": [42, 48], "count_degrees_negative_in": [42, 48], "count_degrees_negative_out": [42, 48], "count_degrees_non_direct": [42, 48], "count_degrees_posit": [42, 48], "count_degrees_positive_in": [42, 48], "count_degrees_positive_out": [42, 48], "count_degrees_sign": [42, 48], "count_degrees_signed_in": [42, 48], "count_degrees_signed_out": [42, 48], "count_degrees_undirect": [42, 48], "count_ent": [42, 48], "count_identifi": [42, 48], "count_interaction_typ": [42, 48], "count_interact": [42, 48], "nonttyp": [42, 48], "unless": [42, 48, 1090], "howev": [42, 552, 1089, 1090], "count_interactions_undirect": [42, 48], "limit": [42, 93, 401, 420, 456, 457, 458, 551, 553, 757, 760, 761, 858, 861, 1090], "activity_flow": [42, 911, 1090], "secondari": [42, 815, 848, 902, 911, 970, 1089, 1090], "source_entity_typ": 42, "target_entity_typ": 42, "count_interactions_0": [42, 48], "being": [42, 48, 97, 754, 1084, 1086, 1087], "awar": [42, 1090], "count_interactions_direct": [42, 48], "get_interact": [42, 48], "count_interactions_mutu": [42, 48], "note": [42, 93, 250, 251, 256, 344, 349, 354, 514, 624, 625, 627, 628, 629, 631, 911, 970, 1090, 1093], "mutual": [42, 467], "explicit": [42, 197, 970, 983], "count_interactions_neg": [42, 48], "count_interactions_non_direct": [42, 48], "count_interactions_posit": [42, 48], "count_interactions_sign": [42, 48], "count_label": [42, 48], "count_lncrna_identifi": [42, 48], "count_lncrna_label": [42, 48], "count_lncrna": [42, 48], "count_mirna_identifi": [42, 48], "count_mirna_label": [42, 48], "count_mirna": [42, 48], "count_protein_identifi": [42, 48], "count_protein_label": [42, 48], "count_protein": [42, 48], "count_refer": [42, 48], "count_resource_nam": [42, 48], "count_resource_names_via": [42, 48], "count_resourc": [42, 48], "count_resources_via": [42, 48], "count_small_molecule_identifi": [42, 48], "count_small_molecule_label": [42, 48], "count_small_molecul": [42, 48], "data_models_by_data_model": [42, 48], "data_models_by_interaction_typ": [42, 48], "data_models_by_interaction_type_and_data_model": [42, 48], "data_models_by_interaction_type_and_data_model_and_resourc": [42, 48], "data_models_by_refer": [42, 48], "data_models_by_resourc": [42, 48], "datasets_by_data_model": [42, 48], "datasets_by_interaction_typ": [42, 48], "datasets_by_interaction_type_and_data_model": [42, 48], "datasets_by_interaction_type_and_data_model_and_resourc": [42, 48], "datasets_by_refer": [42, 48], "datasets_by_resourc": [42, 48], "degrees_directed_by_data_model": [42, 48], "degrees_directed_by_interaction_typ": [42, 48], "degrees_directed_by_interaction_type_and_data_model": [42, 48], "degrees_directed_by_interaction_type_and_data_model_and_resourc": [42, 48], "degrees_directed_by_refer": [42, 48], "degrees_directed_by_resourc": [42, 48], "degrees_directed_in_by_data_model": [42, 48], "degrees_directed_in_by_interaction_typ": [42, 48], "degrees_directed_in_by_interaction_type_and_data_model": [42, 48], "degrees_directed_in_by_interaction_type_and_data_model_and_resourc": [42, 48], "degrees_directed_in_by_refer": [42, 48], "degrees_directed_in_by_resourc": [42, 48], "degrees_directed_out_by_data_model": [42, 48], "degrees_directed_out_by_interaction_typ": [42, 48], "degrees_directed_out_by_interaction_type_and_data_model": [42, 48], "degrees_directed_out_by_interaction_type_and_data_model_and_resourc": [42, 48], "degrees_directed_out_by_refer": [42, 48], "degrees_directed_out_by_resourc": [42, 48], "degrees_negative_by_data_model": [42, 48], "degrees_negative_by_interaction_typ": [42, 48], "degrees_negative_by_interaction_type_and_data_model": [42, 48], "degrees_negative_by_interaction_type_and_data_model_and_resourc": [42, 48], "degrees_negative_by_refer": [42, 48], "degrees_negative_by_resourc": [42, 48], "degrees_negative_in_by_data_model": [42, 48], "degrees_negative_in_by_interaction_typ": [42, 48], "degrees_negative_in_by_interaction_type_and_data_model": [42, 48], "degrees_negative_in_by_interaction_type_and_data_model_and_resourc": [42, 48], "degrees_negative_in_by_refer": [42, 48], "degrees_negative_in_by_resourc": [42, 48], "degrees_negative_out_by_data_model": [42, 48], "degrees_negative_out_by_interaction_typ": [42, 48], "degrees_negative_out_by_interaction_type_and_data_model": [42, 48], "degrees_negative_out_by_interaction_type_and_data_model_and_resourc": [42, 48], "degrees_negative_out_by_refer": [42, 48], "degrees_negative_out_by_resourc": [42, 48], "degrees_non_directed_by_data_model": [42, 48], "degrees_non_directed_by_interaction_typ": [42, 48], "degrees_non_directed_by_interaction_type_and_data_model": [42, 48], "degrees_non_directed_by_interaction_type_and_data_model_and_resourc": [42, 48], "degrees_non_directed_by_refer": [42, 48], "degrees_non_directed_by_resourc": [42, 48], "degrees_positive_by_data_model": [42, 48], "degrees_positive_by_interaction_typ": [42, 48], "degrees_positive_by_interaction_type_and_data_model": [42, 48], "degrees_positive_by_interaction_type_and_data_model_and_resourc": [42, 48], "degrees_positive_by_refer": [42, 48], "degrees_positive_by_resourc": [42, 48], "degrees_positive_in_by_data_model": [42, 48], "degrees_positive_in_by_interaction_typ": [42, 48], "degrees_positive_in_by_interaction_type_and_data_model": [42, 48], "degrees_positive_in_by_interaction_type_and_data_model_and_resourc": [42, 48], "degrees_positive_in_by_refer": [42, 48], "degrees_positive_in_by_resourc": [42, 48], "degrees_positive_out_by_data_model": [42, 48], "degrees_positive_out_by_interaction_typ": [42, 48], "degrees_positive_out_by_interaction_type_and_data_model": [42, 48], "degrees_positive_out_by_interaction_type_and_data_model_and_resourc": [42, 48], "degrees_positive_out_by_refer": [42, 48], "degrees_positive_out_by_resourc": [42, 48], "degrees_signed_by_data_model": [42, 48], "degrees_signed_by_interaction_typ": [42, 48], "degrees_signed_by_interaction_type_and_data_model": [42, 48], "degrees_signed_by_interaction_type_and_data_model_and_resourc": [42, 48], "degrees_signed_by_refer": [42, 48], "degrees_signed_by_resourc": [42, 48], "degrees_signed_in_by_data_model": [42, 48], "degrees_signed_in_by_interaction_typ": [42, 48], "degrees_signed_in_by_interaction_type_and_data_model": [42, 48], "degrees_signed_in_by_interaction_type_and_data_model_and_resourc": [42, 48], "degrees_signed_in_by_refer": [42, 48], "degrees_signed_in_by_resourc": [42, 48], "degrees_signed_out_by_data_model": [42, 48], "degrees_signed_out_by_interaction_typ": [42, 48], "degrees_signed_out_by_interaction_type_and_data_model": [42, 48], "degrees_signed_out_by_interaction_type_and_data_model_and_resourc": [42, 48], "degrees_signed_out_by_refer": [42, 48], "degrees_signed_out_by_resourc": [42, 48], "degrees_undirected_by_data_model": [42, 48], "degrees_undirected_by_interaction_typ": [42, 48], "degrees_undirected_by_interaction_type_and_data_model": [42, 48], "degrees_undirected_by_interaction_type_and_data_model_and_resourc": [42, 48], "degrees_undirected_by_refer": [42, 48], "degrees_undirected_by_resourc": [42, 48], "direction_kei": 42, "dorothea_level": [42, 48, 1090, 1093], "liter": [42, 48, 152, 173, 234, 332, 333, 343, 344, 345, 346, 368, 437, 568, 569, 577, 693, 694, 757, 760, 761, 848, 911, 969, 970, 990, 994, 997, 1003, 1004, 1007, 1008], "c": [42, 249, 255, 301, 303, 304, 305, 309, 310, 311, 313, 314, 315, 317, 318, 319, 320, 726, 727, 921, 964, 967, 1027, 1076, 1077, 1078, 1079, 1080, 1081, 1090], "d": [42, 249, 255, 900, 921, 1027, 1090], "dorothea": [42, 48, 911, 928, 1092, 1093], "confid": [42, 48, 116, 249, 250, 251, 253, 255, 256, 404, 405, 754, 757, 760, 761, 921, 928, 990, 997, 1003, 1004, 1007, 1008, 1090, 1093], "some": [42, 48, 456, 551, 553, 875, 900, 949, 954, 963, 970, 981, 983, 990, 992, 994, 997, 999, 1003, 1004, 1007, 1015, 1089, 1090, 1093], "due": [42, 970, 1089, 1090], "natur": [42, 540, 1015, 1089], "symbol": [42, 48, 295, 296, 297, 346, 351, 356, 552, 553, 616, 657, 690, 814, 863, 870, 874, 970, 976, 977, 980, 981, 983, 992, 1089, 1090, 1093], "take": [42, 93, 624, 625, 627, 628, 629, 630, 631, 969, 970, 981, 1015, 1072, 1089, 1090], "highest": [42, 309, 314, 754, 963, 1093], "drop": [42, 1090], "rest": [42, 197, 269, 303, 305, 310, 313, 315, 317, 319, 812, 818, 821, 831, 1093], "five": [42, 382, 970, 981, 983, 1089, 1090], "entities_by_data_model": [42, 48], "entities_by_interaction_typ": [42, 48], "entities_by_interaction_type_and_data_model": [42, 48], "entities_by_interaction_type_and_data_model_and_resourc": [42, 48], "entities_by_refer": [42, 48], "entities_by_resourc": [42, 48], "evaluate_evid": 42, "this_direct": 42, "evalu": [42, 961, 1090], "generate_df_record": 42, "by_sourc": [42, 48, 1027], "with_refer": [42, 48], "record": [42, 48, 94, 107, 115, 116, 133, 136, 147, 152, 153, 157, 158, 163, 191, 219, 245, 269, 287, 343, 344, 345, 346, 348, 349, 350, 351, 353, 354, 355, 356, 381, 430, 456, 568, 574, 575, 576, 578, 583, 624, 625, 627, 628, 629, 630, 631, 667, 677, 684, 686, 748, 824, 990, 994, 1027, 1093], "becaus": [42, 137, 144, 346, 351, 356, 624, 625, 627, 628, 629, 630, 631, 915, 1027, 1029, 1090, 1093], "need": [42, 152, 345, 350, 355, 408, 412, 427, 552, 798, 940, 970, 981, 1015, 1018, 1088, 1090, 1093], "group": [42, 48, 191, 262, 574, 575, 576, 577, 578, 861, 1015, 1068, 1089, 1090, 1092], "By": [42, 48, 116, 345, 350, 355, 456, 457, 458, 551, 553, 793, 812, 911, 948, 953, 961, 963, 990, 997, 1003, 1004, 1007, 1008, 1015, 1090, 1093], "most": [42, 97, 107, 309, 314, 748, 824, 919, 945, 971, 1089, 1090], "applic": [42, 1089, 1090], "refrenc": 42, "still": [42, 970, 981, 983, 1089, 1090], "rare": [42, 970, 981, 983], "increas": [42, 1090], "size": [42, 269, 420, 748, 940, 1015, 1018, 1068, 1090], "significantli": 42, "get_attr": 42, "extract": [42, 96, 124, 168, 221, 269, 345, 350, 355, 386, 387, 457, 611, 694, 715, 718, 816, 939, 940, 1015, 1018, 1090], "belong": [42, 48, 877, 963, 1005, 1090], "get_complex_identifi": [42, 48], "get_complex_label": [42, 48], "get_complex": [42, 48, 1090], "get_data_model": [42, 48], "get_dataset": [42, 48], "get_degre": 42, "get_degrees_direct": [42, 48], "get_degrees_directed_in": [42, 48], "get_degrees_directed_out": [42, 48], "get_degrees_neg": [42, 48], "get_degrees_negative_in": [42, 48], "get_degrees_negative_out": [42, 48], "get_degrees_non_direct": [42, 48], "get_degrees_posit": [42, 48], "get_degrees_positive_in": [42, 48], "get_degrees_positive_out": [42, 48], "get_degrees_sign": [42, 48], "get_degrees_signed_in": [42, 48], "get_degrees_signed_out": [42, 48], "get_degrees_undirect": [42, 48], "get_direct": [42, 1090], "state": [42, 48, 110, 351, 356, 1018, 1090], "instead": [42, 48, 234, 344, 349, 354, 458, 568, 569, 617, 696, 697, 933, 943, 1090, 1091, 1093], "presenc": 42, "absenc": 42, "valid": [42, 48, 88, 155, 412, 544, 678, 812, 888, 889, 890, 891, 970], "src": [42, 1092], "tgt": 42, "boolean": [42, 626, 868, 1090], "get_ent": [42, 48], "get_identifi": [42, 48], "get_interaction_typ": [42, 48, 1090], "get_interactions_0": [42, 48], "get_interactions_direct": [42, 48], "get_interactions_mutu": [42, 48], "get_interactions_neg": [42, 48], "get_interactions_non_direct": [42, 48], "get_interactions_non_directed_0": [42, 48], "sort": [42, 1090, 1092], "insid": [42, 970], "get_interactions_posit": [42, 48, 1090], "get_interactions_sign": [42, 48], "get_interactions_undirect": [42, 48], "matter": [42, 48, 928, 970, 1089, 1090], "get_interactions_undirected_0": [42, 48], "get_label": [42, 48], "get_lncrna_identifi": [42, 48], "get_lncrna_label": [42, 48], "get_lncrna": [42, 48], "get_mirna_identifi": [42, 48], "get_mirna_label": [42, 48], "get_mirna": [42, 48], "get_protein_identifi": [42, 48], "get_protein_label": [42, 48], "get_protein": [42, 48, 1015], "get_refer": [42, 48, 1090], "get_resource_nam": [42, 48, 1090], "get_resource_names_via": [42, 48], "get_resourc": [42, 48], "get_resources_via": [42, 48], "get_sign": [42, 1090], "diret": 42, "th": [42, 969], "denot": 42, "get_small_molecule_identifi": [42, 48], "get_small_molecule_label": [42, 48], "get_small_molecul": [42, 48], "has_sign": 42, "check": [42, 94, 401, 836, 887, 888, 889, 890, 891, 970, 990, 994, 1032, 1089, 1090, 1093], "identifiers_by_data_model": [42, 48], "identifiers_by_interaction_typ": [42, 48], "identifiers_by_interaction_type_and_data_model": [42, 48], "identifiers_by_interaction_type_and_data_model_and_resourc": [42, 48], "identifiers_by_refer": [42, 48], "identifiers_by_resourc": [42, 48], "interaction_types_by_data_model": [42, 48], "interaction_types_by_interaction_typ": [42, 48], "interaction_types_by_interaction_type_and_data_model": [42, 48], "interaction_types_by_interaction_type_and_data_model_and_resourc": [42, 48], "interaction_types_by_refer": [42, 48], "interaction_types_by_resourc": [42, 48], "interactions_0_by_data_model": [42, 48], "interactions_0_by_interaction_typ": [42, 48], "interactions_0_by_interaction_type_and_data_model": [42, 48], "interactions_0_by_interaction_type_and_data_model_and_resourc": [42, 48], "interactions_0_by_refer": [42, 48], "interactions_0_by_resourc": [42, 48], "interactions_by_data_model": [42, 48], "interactions_by_interaction_typ": [42, 48], "interactions_by_interaction_type_and_data_model": [42, 48], "interactions_by_interaction_type_and_data_model_and_resourc": [42, 48], "interactions_by_refer": [42, 48], "interactions_by_resourc": [42, 48], "interactions_directed_by_data_model": [42, 48], "interactions_directed_by_interaction_typ": [42, 48], "interactions_directed_by_interaction_type_and_data_model": [42, 48], "interactions_directed_by_interaction_type_and_data_model_and_resourc": [42, 48], "interactions_directed_by_refer": [42, 48], "interactions_directed_by_resourc": [42, 48], "interactions_mutual_by_data_model": [42, 48], "interactions_mutual_by_interaction_typ": [42, 48], "interactions_mutual_by_interaction_type_and_data_model": [42, 48], "interactions_mutual_by_interaction_type_and_data_model_and_resourc": [42, 48], "interactions_mutual_by_refer": [42, 48], "interactions_mutual_by_resourc": [42, 48], "interactions_negative_by_data_model": [42, 48], "interactions_negative_by_interaction_typ": [42, 48], "interactions_negative_by_interaction_type_and_data_model": [42, 48], "interactions_negative_by_interaction_type_and_data_model_and_resourc": [42, 48], "interactions_negative_by_refer": [42, 48], "interactions_negative_by_resourc": [42, 48], "interactions_non_directed_0_by_data_model": [42, 48], "interactions_non_directed_0_by_interaction_typ": [42, 48], "interactions_non_directed_0_by_interaction_type_and_data_model": [42, 48], "interactions_non_directed_0_by_interaction_type_and_data_model_and_resourc": [42, 48], "interactions_non_directed_0_by_refer": [42, 48], "interactions_non_directed_0_by_resourc": [42, 48], "interactions_non_directed_by_data_model": [42, 48], "interactions_non_directed_by_interaction_typ": [42, 48], "interactions_non_directed_by_interaction_type_and_data_model": [42, 48], "interactions_non_directed_by_interaction_type_and_data_model_and_resourc": [42, 48], "interactions_non_directed_by_refer": [42, 48], "interactions_non_directed_by_resourc": [42, 48], "interactions_positive_by_data_model": [42, 48], "interactions_positive_by_interaction_typ": [42, 48], "interactions_positive_by_interaction_type_and_data_model": [42, 48], "interactions_positive_by_interaction_type_and_data_model_and_resourc": [42, 48], "interactions_positive_by_refer": [42, 48], "interactions_positive_by_resourc": [42, 48], "interactions_signed_by_data_model": [42, 48], "interactions_signed_by_interaction_typ": [42, 48], "interactions_signed_by_interaction_type_and_data_model": [42, 48], "interactions_signed_by_interaction_type_and_data_model_and_resourc": [42, 48], "interactions_signed_by_refer": [42, 48], "interactions_signed_by_resourc": [42, 48], "interactions_undirected_0_by_data_model": [42, 48], "interactions_undirected_0_by_interaction_typ": [42, 48], "interactions_undirected_0_by_interaction_type_and_data_model": [42, 48], "interactions_undirected_0_by_interaction_type_and_data_model_and_resourc": [42, 48], "interactions_undirected_0_by_refer": [42, 48], "interactions_undirected_0_by_resourc": [42, 48], "interactions_undirected_by_data_model": [42, 48], "interactions_undirected_by_interaction_typ": [42, 48], "interactions_undirected_by_interaction_type_and_data_model": [42, 48], "interactions_undirected_by_interaction_type_and_data_model_and_resourc": [42, 48], "interactions_undirected_by_refer": [42, 48], "interactions_undirected_by_resourc": [42, 48], "is_direct": [42, 868, 1090], "is_directed_by_resourc": 42, "is_inhibit": [42, 1090], "is_loop": 42, "loop": [42, 48, 1076, 1077, 1078, 1079, 1080, 1081, 1088], "endpoint": [42, 48, 287, 1090], "is_mutu": 42, "is_mutual_by_resourc": 42, "is_stimul": [42, 1090], "activatori": 42, "iter_evid": 42, "iter_match_evid": 42, "labels_by_data_model": [42, 48], "labels_by_interaction_typ": [42, 48], "labels_by_interaction_type_and_data_model": [42, 48], "labels_by_interaction_type_and_data_model_and_resourc": [42, 48], "labels_by_refer": [42, 48], "labels_by_resourc": [42, 48], "lncrna_identifiers_by_data_model": [42, 48], "lncrna_identifiers_by_interaction_typ": [42, 48], "lncrna_identifiers_by_interaction_type_and_data_model": [42, 48], "lncrna_identifiers_by_interaction_type_and_data_model_and_resourc": [42, 48], "lncrna_identifiers_by_refer": [42, 48], "lncrna_identifiers_by_resourc": [42, 48], "lncrna_labels_by_data_model": [42, 48], "lncrna_labels_by_interaction_typ": [42, 48], "lncrna_labels_by_interaction_type_and_data_model": [42, 48], "lncrna_labels_by_interaction_type_and_data_model_and_resourc": [42, 48], "lncrna_labels_by_refer": [42, 48], "lncrna_labels_by_resourc": [42, 48], "lncrnas_by_data_model": [42, 48], "lncrnas_by_interaction_typ": [42, 48], "lncrnas_by_interaction_type_and_data_model": [42, 48], "lncrnas_by_interaction_type_and_data_model_and_resourc": [42, 48], "lncrnas_by_refer": [42, 48], "lncrnas_by_resourc": [42, 48], "majority_dir": 42, "equal": [42, 911], "majority_sign": 42, "straight": [42, 1072, 1076, 1077, 1078, 1079, 1080, 1081, 1090], "revers": [42, 970, 1090], "mean": [42, 48, 93, 346, 351, 356, 427, 456, 694, 748, 881, 898, 911, 932, 970, 971, 980, 982, 984, 1015, 1090], "anoth": [42, 344, 346, 349, 351, 354, 356, 961, 1064, 1089, 1090, 1093], "mirna_identifiers_by_data_model": [42, 48], "mirna_identifiers_by_interaction_typ": [42, 48], "mirna_identifiers_by_interaction_type_and_data_model": [42, 48], "mirna_identifiers_by_interaction_type_and_data_model_and_resourc": [42, 48], "mirna_identifiers_by_refer": [42, 48], "mirna_identifiers_by_resourc": [42, 48], "mirna_labels_by_data_model": [42, 48], "mirna_labels_by_interaction_typ": [42, 48], "mirna_labels_by_interaction_type_and_data_model": [42, 48], "mirna_labels_by_interaction_type_and_data_model_and_resourc": [42, 48], "mirna_labels_by_refer": [42, 48], "mirna_labels_by_resourc": [42, 48], "mirnas_by_data_model": [42, 48], "mirnas_by_interaction_typ": [42, 48], "mirnas_by_interaction_type_and_data_model": [42, 48], "mirnas_by_interaction_type_and_data_model_and_resourc": [42, 48], "mirnas_by_refer": [42, 48], "mirnas_by_resourc": [42, 48], "negative_a_b": 42, "a_b": 42, "negative_b_a": 42, "b_a": 42, "negative_resources_a_b": 42, "negative_resources_b_a": 42, "negative_revers": 42, "negative_straight": 42, "positive_a_b": 42, "positive_b_a": 42, "positive_resources_a_b": 42, "positive_resources_b_a": 42, "positive_revers": 42, "positive_straight": 42, "protein_identifiers_by_data_model": [42, 48], "protein_identifiers_by_interaction_typ": [42, 48], "protein_identifiers_by_interaction_type_and_data_model": [42, 48], "protein_identifiers_by_interaction_type_and_data_model_and_resourc": [42, 48], "protein_identifiers_by_refer": [42, 48], "protein_identifiers_by_resourc": [42, 48], "protein_labels_by_data_model": [42, 48], "protein_labels_by_interaction_typ": [42, 48], "protein_labels_by_interaction_type_and_data_model": [42, 48], "protein_labels_by_interaction_type_and_data_model_and_resourc": [42, 48], "protein_labels_by_refer": [42, 48], "protein_labels_by_resourc": [42, 48], "proteins_by_data_model": [42, 48], "proteins_by_interaction_typ": [42, 48], "proteins_by_interaction_type_and_data_model": [42, 48], "proteins_by_interaction_type_and_data_model_and_resourc": [42, 48], "proteins_by_refer": [42, 48], "proteins_by_resourc": [42, 48], "references_by_data_model": [42, 48], "references_by_interaction_typ": [42, 48], "references_by_interaction_type_and_data_model": [42, 48], "references_by_interaction_type_and_data_model_and_resourc": [42, 48], "references_by_refer": [42, 48], "references_by_resourc": [42, 48, 1090], "resource_names_by_data_model": [42, 48], "resource_names_by_interaction_typ": [42, 48], "resource_names_by_interaction_type_and_data_model": [42, 48], "resource_names_by_interaction_type_and_data_model_and_resourc": [42, 48], "resource_names_by_refer": [42, 48], "resource_names_by_resourc": [42, 48], "resource_names_via_by_data_model": [42, 48], "resource_names_via_by_interaction_typ": [42, 48], "resource_names_via_by_interaction_type_and_data_model": [42, 48], "resource_names_via_by_interaction_type_and_data_model_and_resourc": [42, 48], "resource_names_via_by_refer": [42, 48], "resource_names_via_by_resourc": [42, 48], "resources_a_b": 42, "resources_b_a": 42, "resources_by_data_model": [42, 48], "resources_by_interaction_typ": [42, 48], "resources_by_interaction_type_and_data_model": [42, 48], "resources_by_interaction_type_and_data_model_and_resourc": [42, 48], "resources_by_refer": [42, 48], "resources_by_resourc": [42, 48], "resources_undirect": 42, "resources_via_by_data_model": [42, 48], "resources_via_by_interaction_typ": [42, 48], "resources_via_by_interaction_type_and_data_model": [42, 48], "resources_via_by_interaction_type_and_data_model_and_resourc": [42, 48], "resources_via_by_refer": [42, 48], "resources_via_by_resourc": [42, 48], "serialize_evid": 42, "small_molecule_identifiers_by_data_model": [42, 48], "small_molecule_identifiers_by_interaction_typ": [42, 48], "small_molecule_identifiers_by_interaction_type_and_data_model": [42, 48], "small_molecule_identifiers_by_interaction_type_and_data_model_and_resourc": [42, 48], "small_molecule_identifiers_by_refer": [42, 48], "small_molecule_identifiers_by_resourc": [42, 48], "small_molecule_labels_by_data_model": [42, 48], "small_molecule_labels_by_interaction_typ": [42, 48], "small_molecule_labels_by_interaction_type_and_data_model": [42, 48], "small_molecule_labels_by_interaction_type_and_data_model_and_resourc": [42, 48], "small_molecule_labels_by_refer": [42, 48], "small_molecule_labels_by_resourc": [42, 48], "small_molecules_by_data_model": [42, 48], "small_molecules_by_interaction_typ": [42, 48], "small_molecules_by_interaction_type_and_data_model": [42, 48], "small_molecules_by_interaction_type_and_data_model_and_resourc": [42, 48], "small_molecules_by_refer": [42, 48], "small_molecules_by_resourc": [42, 48], "bidirect": 42, "sources_revers": 42, "sources_straight": 42, "sources_undirect": 42, "src_by_resourc": 42, "found": [42, 48, 900, 970, 981, 983, 1011, 1090], "invalid": [42, 1090], "tgt_by_resourc": 42, "new_attr": 42, "abl": [42, 48, 82, 552, 939, 1089, 1090], "chang": [42, 232, 812, 818, 821, 831, 861, 942, 945, 956, 970, 1089, 1090], "least": [42, 1090], "1956": [42, 1090], "entrez": [42, 331, 371, 372, 552, 969, 970, 981, 983, 992, 999, 1090], "egfr": [42, 48, 1018, 1089, 1090, 1093], "copi": [42, 144, 861, 898, 1089, 1090], "unset_dir": 42, "remov": [42, 48, 170, 229, 300, 301, 312, 696, 861, 900, 911, 963, 969, 970, 971, 1011, 1018, 1040, 1042, 1043, 1090, 1092], "determin": [42, 970], "unset_direct": 42, "unset_interaction_typ": 42, "unset_sign": 42, "positive_attribut": 42, "must": [42, 48, 152, 346, 351, 356, 911, 990, 992, 994, 999, 1072, 1090, 1093], "which_direct": 42, "where": [42, 48, 107, 303, 304, 305, 313, 314, 315, 317, 318, 319, 320, 437, 456, 514, 553, 657, 782, 881, 902, 939, 990, 992, 994, 997, 999, 1008, 1018, 1076, 1077, 1078, 1079, 1080, 1081, 1090, 1093], "second": [42, 48, 258, 420, 568, 569, 610, 619, 620, 622, 662, 696, 782, 969, 970, 971, 1018, 1090], "which_dir": 42, "which_sign": 42, "id_a": [43, 48, 591, 881, 1090], "id_b": [43, 48, 591, 881, 1090], "type_a": [43, 1090], "type_b": [43, 1090], "dmodel": [43, 1090], "4": [43, 48, 50, 68, 70, 116, 127, 139, 247, 330, 331, 374, 414, 443, 588, 660, 754, 813, 858, 902, 998, 1012, 1067, 1072, 1084, 1087, 1088, 1090, 1093], "7": [43, 50, 68, 104, 181, 245, 247, 331, 346, 351, 356, 443, 660, 813, 858, 1088, 1089, 1090, 1093], "5": [43, 50, 68, 127, 139, 247, 330, 331, 335, 336, 346, 351, 356, 414, 432, 443, 660, 813, 858, 970, 981, 1018, 1067, 1088, 1089, 1090], "9": [43, 50, 55, 247, 847, 858, 1088, 1089, 1090], "8": [43, 50, 247, 432, 443, 858, 939, 940, 1088, 1089, 1090], "entity_a": [44, 48], "entity_b": [44, 48], "adhes": 46, "o14976": 46, "o15231": 46, "o43294": 46, "o60711": 46, "o60759": 46, "p07332": 46, "p29965": 46, "p35221": 46, "p35222": 46, "p50552": 46, "p56945": 46, "q02297": 46, "q03001": 46, "q13153": 46, "q13895": 46, "q14451": 46, "q14511": 46, "q14943": 46, "q14952": 46, "q14953": 46, "q155q3": 46, "q15654": 46, "q5jra6": 46, "q5t4b2": 46, "q7l5y9": 46, "q7z4i7": 46, "q86tp1": 46, "q8ivt2": 46, "q8izw8": 46, "q8n264": 46, "q8n743": 46, "q8nhk3": 46, "q8wx93": 46, "q92502": 46, "q96ac1": 46, "q96if1": 46, "q96qb1": 46, "q99689": 46, "q9h792": 46, "q9hbi0": 46, "q9hbi1": 46, "q9nq75": 46, "q9ubt7": 46, "q9ugi8": 46, "q9ugp4": 46, "q9ui47": 46, "q9uqb3": 46, "cell_surface_enzym": 46, "o00391": 46, "p04843": 46, "p08842": 46, "p09958": 46, "p11117": 46, "p19021": 46, "p40126": 46, "p52961": 46, "q13444": 46, "q15125": 46, "q8tcj2": 46, "q8wud6": 46, "q96jj7": 46, "q9nph5": 46, "q9uk23": 46, "q9ukf2": 46, "cell_surface_ligand": 46, "p00533": [46, 48, 1089, 1090, 1093], "p0dpd6": 46, "ligand": [46, 114, 115, 116, 117, 125, 127, 128, 129, 131, 132, 133, 134, 135, 136, 142, 143, 146, 148, 183, 184, 279, 327, 375, 414, 482, 628, 630, 690, 726, 728, 1093], "o00220": 46, "o00300": 46, "o00468": 46, "o00587": 46, "o00592": 46, "o14594": 46, "o14649": 46, "o14672": 46, "o15031": 46, "o15197": 46, "o15496": 46, "o43157": 46, "o43184": 46, "o43278": 46, "o43852": 46, "o43914": 46, "o60462": 46, "o60469": 46, "o60486": 46, "o60494": 46, "o75051": 46, "o75077": 46, "o75330": 46, "o75508": 46, "o75509": 46, "o75534": 46, "o75596": 46, "o94887": 46, "o95084": 46, "o95236": 46, "o95274": 46, "o95428": 46, "o95467": 46, "o95711": 46, "o95754": 46, "p00451": 46, "p00488": 46, "p00734": 46, "p00740": 46, "p00742": 46, "p00748": 46, "p00749": 46, "p00750": 46, "p00797": 46, "p00813": 46, "p00995": 46, "p01008": 46, "p01009": 46, "p01023": 46, "p01024": 46, "p01031": 46, "p01033": 46, "p01112": 46, "p01589": 46, "p02452": [46, 1090], "p02458": [46, 1090], "p02461": [46, 1090], "p02462": [46, 1090], "p02654": 46, "p02671": 46, "p02675": 46, "p02679": 46, "p02741": 46, "p02745": 46, "p02746": 46, "p02751": 46, "p02753": 46, "p02765": 46, "p02768": 46, "p02788": 46, "p03951": 46, "p03956": 46, "p03973": 46, "p04003": 46, "p04070": 46, "p04196": 46, "p04278": 46, "p04626": 46, "p04899": 46, "p05067": 46, "p05106": 46, "p05107": 46, "p05121": 46, "p05155": 46, "p05543": 46, "p05556": 46, "p05997": 46, "p06454": 46, "p06734": 46, "p06756": [46, 1090], "p06858": 46, "p07093": 46, "p07225": 46, "p07237": 46, "p07288": 46, "p07602": 46, "p07900": 46, "p08034": 46, "p08069": 46, "p08123": 46, "p08174": 46, "p08236": 46, "p08253": 46, "p08514": 46, "p08571": 46, "p08572": [46, 1090], "p08575": 46, "p08582": 46, "p08603": 46, "p08670": 46, "p08709": 46, "p08861": 46, "p08865": 46, "p09211": 46, "p09237": 46, "p09417": 46, "p09429": 46, "p0c0l4": 46, "p0c7t3": 46, "p0cg37": 46, "p0dmv8": 46, "p0dp23": [46, 1090], "p0dp24": [46, 1090], "p0dp25": [46, 1090], "p10144": 46, "p10153": 46, "p10586": 46, "p10646": 46, "p11150": 46, "p11226": 46, "p11229": 46, "p11362": [46, 1090], "p11912": 46, "p12107": 46, "p12109": 46, "p12110": 46, "p12821": 46, "p12830": 46, "p13385": 46, "p13591": 46, "p13612": 46, "p13637": 46, "p13688": 46, "p14416": [46, 1090], "p14618": 46, "p14625": 46, "p14778": 46, "p14780": 46, "p15151": 46, "p15531": 46, "p15907": 46, "p16035": 46, "p16070": 46, "p16109": 46, "p16473": 46, "p16520": 46, "p16671": 46, "p17302": 46, "p17752": 46, "p17948": 46, "p18564": 46, "p19113": 46, "p19823": 46, "p19835": 46, "p20062": 46, "p20273": 46, "p20292": 46, "p20309": 46, "p20849": 46, "p20908": 46, "p20916": 46, "p21462": 46, "p21709": 46, "p21802": 46, "p21810": 46, "p21815": 46, "p21860": 46, "p21917": 46, "p21941": 46, "p21980": 46, "p22392": 46, "p22692": 46, "p22897": 46, "p23471": 46, "p23515": 46, "p25063": 46, "p25090": 46, "p25940": 46, "p25942": 46, "p26012": 46, "p26441": 46, "p26842": 46, "p27658": 46, "p28335": 46, "p28907": 46, "p28908": 46, "p29317": 46, "p29322": 46, "p29323": 46, "p29400": 46, "p30530": 46, "p30533": 46, "p30542": 46, "p30874": 46, "p31025": 46, "p31785": 46, "p35212": 46, "p35354": 46, "p35475": 46, "p35555": 46, "p35613": 46, "p35625": 46, "p36383": 46, "p36897": 46, "p36941": 46, "p39019": 46, "p39060": 46, "p39900": 46, "p41143": 46, "p41594": 46, "p42081": 46, "p42127": 46, "p43121": 46, "p43405": 46, "p43489": 46, "p43490": 46, "p45452": 46, "p48039": 46, "p48651": 46, "p49768": 46, "p49913": 46, "p50052": 46, "p51654": 46, "p52945": 46, "p53420": 46, "p54577": 46, "p54753": 46, "p54756": 46, "p54760": 46, "p54762": 46, "p54764": 46, "p55058": 46, "p55789": 46, "p56159": 46, "p61626": 46, "p61769": 46, "p62987": 46, "p63092": 46, "p78310": 46, "p78324": 46, "p78536": 46, "p80188": [46, 1090], "p80303": 46, "p84077": 46, "p84996": 46, "p98160": 46, "p98164": 46, "q01469": 46, "q01955": 46, "q02094": 46, "q02388": 46, "q02817": 46, "q04721": 46, "q05707": 46, "q07326": 46, "q07954": 46, "q08334": 46, "q08722": 46, "q08828": 46, "q10588": 46, "q12913": 46, "q12918": 46, "q12933": 46, "q13158": 46, "q13241": 46, "q13255": [46, 1090], "q13352": 46, "q13361": 46, "q13442": 46, "q13443": 46, "q13477": 46, "q13936": [46, 1090], "q14031": 46, "q14050": 46, "q14055": 46, "q14118": 46, "q14242": 46, "q14766": 46, "q15165": 46, "q15223": 46, "q15262": 46, "q15303": 46, "q15375": 46, "q15762": 46, "q16613": 46, "q2mv58": 46, "q2vpa4": 46, "q4vx76": 46, "q5jwf2": 46, "q5sr53": 46, "q5t442": 46, "q5t5a4": 46, "q6nw40": 46, "q6uww8": 46, "q6uwx4": 46, "q6v0i7": 46, "q7z6a9": 46, "q86ur5": 46, "q8iwl1": 46, "q8izj3": 46, "q8izl2": 46, "q8n2x6": 46, "q8n474": 46, "q8nfk1": 46, "q8nft8": 46, "q8ngh5": 46, "q8ngh8": 46, "q8nhj6": 46, "q8nhp8": 46, "q8tax7": 46, "q8wtv0": 46, "q8wwy8": 46, "q8wz79": 46, "q92819": 46, "q92854": 46, "q92896": 46, "q92956": 46, "q96a49": 46, "q96cg8": 46, "q96da0": 46, "q96fe5": 46, "q99259": 46, "q99466": 46, "q99965": 46, "q9bq66": 46, "q9bs26": 46, "q9bx66": 46, "q9bzr6": 46, "q9bzw8": 46, "q9bzz2": [46, 1090], "q9c0c4": 46, "q9h2a7": 46, "q9h2e6": 46, "q9h3s1": 46, "q9h9h4": 46, "q9hcm2": 46, "q9nqc3": 46, "q9nr96": 46, "q9nrv9": 46, "q9nsg2": 46, "q9ntn9": 46, "q9nup9": 46, "q9nv23": 46, "q9nwz3": 46, "q9nx52": 46, "q9nzc2": 46, "q9nzr2": 46, "q9uby5": [46, 1090], "q9uhg3": 46, "q9uiw2": 46, "q9uju6": 46, "q9ukq2": 46, "q9ulp9": 46, "q9um47": 46, "q9uq26": 46, "q9xrx5": 46, "q9y215": 46, "q9y2i2": 46, "q9y4d7": 46, "q9y566": 46, "q9y5u5": 46, "q9y624": 46, "q9y625": 46, "q9y6n7": 46, "receptor": [46, 48, 114, 115, 116, 117, 125, 127, 128, 129, 131, 132, 133, 134, 135, 136, 139, 142, 143, 146, 148, 183, 184, 279, 374, 375, 414, 482, 690, 726, 728, 1093], "a6nfa1": 46, "b2ruy7": 46, "b4ds77": 46, "o00170": 46, "o00548": 46, "o00555": 46, "o14493": 46, "o14638": 46, "o14788": 46, "o14795": 46, "o15162": 46, "o15374": 46, "o15551": 46, "o15554": 46, "o43525": 46, "o43813": 46, "o43866": 46, "o43921": 46, "o60291": 46, "o60359": 46, "o75078": 46, "o75106": 46, "o75144": 46, "o75575": 46, "o75923": 46, "o94772": 46, "o94779": 46, "o94856": 46, "o95196": 46, "o95259": 46, "o95477": 46, "o95727": 46, "o95897": 46, "o95967": 46, "o95994": 46, "o95998": 46, "p00747": 46, "p01133": 46, "p01303": [46, 1090], "p01889": 46, "p01903": 46, "p01906": 46, "p01909": 46, "p01911": 46, "p01920": 46, "p02649": 46, "p04004": 46, "p04439": 46, "p05026": 46, "p05156": 46, "p05187": 46, "p05231": 46, "p05362": 46, "p05538": 46, "p07942": 46, "p09326": 46, "p09917": 46, "p09923": 46, "p10321": 46, "p10589": 46, "p11168": 46, "p13056": 46, "p13569": 46, "p13598": 46, "p13765": 46, "p15514": 46, "p15813": 46, "p16422": [46, 1090], "p16581": 46, "p17693": 46, "p17813": 46, "p18433": 46, "p19256": 46, "p19801": 46, "p20827": 46, "p21246": 46, "p21589": 46, "p21926": 46, "p22001": 46, "p22460": 46, "p22736": 46, "p23276": 46, "p23510": 46, "p24043": 46, "p25098": 46, "p25189": 46, "p26038": 46, "p27701": 46, "p27824": 46, "p28906": 46, "p29016": 46, "p29033": 46, "p29460": 46, "p29972": 46, "p30301": 46, "p30511": 46, "p31431": 46, "p31749": [46, 1090], "p31997": 46, "p32004": 46, "p32942": 46, "p32970": 46, "p32971": 46, "p35499": 46, "p36021": 46, "p36269": 46, "p41235": 46, "p48050": 46, "p48509": 46, "p48552": 46, "p50591": 46, "p51787": 46, "p51828": 46, "p52797": 46, "p52798": 46, "p52799": 46, "p52803": 46, "p54709": 46, "p54750": 46, "p54851": 46, "p55157": 46, "p55160": 46, "p55268": 46, "p56705": 46, "p57057": 46, "p57087": 46, "p57739": 46, "p58401": 46, "p61160": 46, "p62079": 46, "p62955": 46, "p78504": 46, "p78509": 46, "p78562": 46, "p79483": 46, "p84022": 46, "p84157": 46, "p98172": 46, "q00994": 46, "q01064": 46, "q02108": 46, "q02153": 46, "q02246": 46, "q02413": 46, "q02641": 46, "q02846": 46, "q03135": [46, 1090], "q04724": 46, "q05940": 46, "q06643": 46, "q07075": 46, "q08380": 46, "q08am6": 46, "q12809": 46, "q12884": 46, "q13061": 46, "q13114": 46, "q13275": 46, "q13445": 46, "q13520": 46, "q13740": 46, "q13822": 46, "q14123": 46, "q14126": 46, "q14213": 46, "q14524": 46, "q14541": 46, "q14563": 46, "q14773": 46, "q14956": 46, "q14982": 46, "q14994": 46, "q14995": 46, "q15628": 46, "q15758": 46, "q15768": 46, "q15842": 46, "q15848": 46, "q16342": 46, "q16363": 46, "q16572": 46, "q16625": 46, "q16853": 46, "q19t08": 46, "q29983": 46, "q2tal6": 46, "q30201": 46, "q401n2": 46, "q496h8": 46, "q4vcs5": 46, "q4w5p6": 46, "q5dx21": 46, "q5tat6": 46, "q5vu97": 46, "q5vy80": 46, "q5zpr3": 46, "q6nyc1": 46, "q6piz9": 46, "q6q4g3": 46, "q6rw13": 46, "q6uw88": 46, "q6uwv6": 46, "q6uxb3": 46, "q6uxi9": 46, "q7l0j3": 46, "q7z7d3": 46, "q86uf1": 46, "q86uk0": 46, "q8iu54": 46, "q8iu80": 46, "q8iuk5": 46, "q8iwv2": 46, "q8izv2": 46, "q8izy2": 46, "q8n126": 46, "q8n2g4": 46, "q8ncm2": 46, "q8ncs7": 46, "q8nec5": 46, "q8nfp4": 46, "q8nfy4": 46, "q8nfz3": 46, "q8ng11": 46, "q8taz6": 46, "q8tcy5": 46, "q8td07": 46, "q8tdm5": 46, "q8wum9": 46, "q8wwa0": 46, "q8wwx8": 46, "q8wxs5": 46, "q92570": 46, "q92673": 46, "q92753": 46, "q92913": 46, "q92954": 46, "q96ap7": 46, "q96b86": 46, "q96dz9": 46, "q96jb6": 46, "q96jk4": 46, "q96jq0": 46, "q96l42": 46, "q96pb7": 46, "q96qt4": 46, "q96s97": 46, "q96sn7": [46, 1090], "q99075": 46, "q99523": 46, "q99712": 46, "q99784": 46, "q9bqq7": 46, "q9brk0": 46, "q9buf7": 46, "q9bx67": 46, "q9bxj0": 46, "q9by67": 46, "q9bye2": 46, "q9bzm4": 46, "q9gzm7": 46, "q9h0r3": 46, "q9h221": 46, "q9h222": 46, "q9h4b8": 46, "q9h7v2": 46, "q9np59": 46, "q9nqs3": 46, "q9nr61": 46, "q9nr82": 46, "q9nrq2": 46, "q9nsa2": 46, "q9ny72": 46, "q9ny84": 46, "q9nyj7": 46, "q9nyz4": 46, "q9nz08": 46, "q9nz53": 46, "q9nzq7": 46, "q9nzv8": 46, "q9p0k1": 46, "q9p0l9": 46, "q9p232": 46, "q9p2k9": 46, "q9p2u7": 46, "q9ubh0": 46, "q9ubn1": 46, "q9ubx5": 46, "q9uef7": 46, "q9uf02": 46, "q9ugm3": 46, "q9uhc9": 46, "q9uir0": 46, "q9ujz1": 46, "q9ukr5": 46, "q9ukv5": 46, "q9uky0": 46, "q9ul54": 46, "q9ulb1": 46, "q9uld8": 46, "q9ulh0": 46, "q9ult6": 46, "q9umd9": 46, "q9umf0": 46, "q9ung2": 46, "q9upu3": 46, "q9uq05": 46, "q9uqd0": 46, "q9y219": 46, "q9y286": 46, "q9y2j0": 46, "q9y3r0": 46, "q9y466": 46, "q9y4c0": 46, "q9y5r2": 46, "q9y5y6": 46, "q9y5y9": 46, "q9y698": 46, "q9y6y9": 46, "higher": [46, 48, 624, 625, 627, 628, 629, 630, 631, 1020, 1089], "intercellular": [46, 861, 1088, 1089, 1092], "commun": [46, 861, 911, 1088, 1089, 1092], "role": [46, 128, 129, 131, 134, 146, 507, 861, 1088, 1089], "make_df": [48, 1090], "df_by_sourc": 48, "df_with_refer": 48, "df_column": 48, "df_dtype": 48, "allow_loop": [48, 868, 1090], "compon": [48, 53, 131, 137, 681, 812, 818, 821, 831, 877, 970, 981, 983, 1090, 1093], "convert": [48, 137, 171, 209, 491, 492, 493, 497, 498, 798, 812, 818, 821, 831, 963, 970, 981, 983, 1011, 1015, 1040, 1069, 1089, 1090], "panda": [48, 71, 72, 73, 84, 85, 173, 209, 215, 217, 218, 234, 235, 236, 237, 238, 239, 240, 248, 292, 448, 574, 575, 576, 577, 578, 617, 668, 696, 697, 721, 722, 723, 724, 985, 1015, 1088, 1089, 1092, 1093], "datafram": [48, 71, 72, 73, 84, 173, 209, 215, 217, 218, 234, 235, 236, 237, 238, 239, 240, 248, 292, 293, 344, 346, 349, 351, 354, 356, 448, 568, 569, 574, 575, 576, 577, 578, 617, 668, 696, 697, 721, 722, 723, 724, 816, 970, 985, 990, 992, 994, 997, 999, 1003, 1008, 1088, 1089], "when": [48, 969, 970, 981, 983, 1072, 1076, 1077, 1078, 1079, 1080, 1081, 1084, 1086, 1087, 1089, 1090], "restrict": [48, 82, 85, 197, 259, 345, 350, 355, 568, 569, 821, 994, 997, 1003, 1004, 1007, 1008, 1090], "allow": [48, 152, 911, 996, 1090], "activated_bi": 48, "entitylist": 48, "doesn": [48, 970, 981, 1089, 1090], "t": [48, 170, 345, 350, 355, 456, 457, 458, 552, 764, 941, 942, 945, 946, 969, 970, 981, 990, 992, 994, 999, 1089, 1090, 1091, 1093], "add_interact": 48, "readi": [48, 812, 818, 821, 831, 1090], "between": [48, 74, 125, 142, 173, 344, 349, 354, 473, 474, 475, 559, 568, 569, 610, 612, 619, 620, 622, 657, 662, 696, 757, 760, 815, 877, 969, 970, 981, 982, 992, 999, 1072, 1077, 1079, 1080, 1089, 1090, 1092, 1093], "stand": [48, 1089], "usual": [48, 1090], "won": [48, 456, 457, 458, 552, 942, 945, 946, 970, 990, 992, 994, 999, 1090], "ad": [48, 1018, 1027, 1089, 1090], "apart": [48, 197, 571, 572, 1089, 1090], "add_nod": 48, "nodes_by_label": 48, "noth": [48, 877, 911, 943], "collect_complex_identifi": 48, "complex_identifi": 48, "collect_complex_label": 48, "complex_label": 48, "collect_complex": 48, "collect_curation_effort": 48, "curation_effort": [48, 880, 1090], "collect_data_model": 48, "collect_dataset": 48, "collect_degrees_direct": 48, "degrees_direct": 48, "collect_degrees_directed_in": 48, "degrees_directed_in": 48, "collect_degrees_directed_out": 48, "degrees_directed_out": 48, "collect_degrees_neg": 48, "degrees_neg": 48, "collect_degrees_negative_in": 48, "degrees_negative_in": 48, "collect_degrees_negative_out": 48, "degrees_negative_out": 48, "collect_degrees_non_direct": 48, "degrees_non_direct": 48, "collect_degrees_posit": 48, "degrees_posit": 48, "collect_degrees_positive_in": 48, "degrees_positive_in": 48, "collect_degrees_positive_out": 48, "degrees_positive_out": 48, "collect_degrees_sign": 48, "degrees_sign": 48, "collect_degrees_signed_in": 48, "degrees_signed_in": 48, "collect_degrees_signed_out": 48, "degrees_signed_out": 48, "collect_degrees_undirect": 48, "degrees_undirect": 48, "collect_ent": 48, "collect_evid": 48, "collect_identifi": 48, "collect_interaction_typ": 48, "collect_interact": [48, 911], "collect_interactions_0": 48, "interactions_0": 48, "collect_interactions_direct": 48, "interactions_direct": 48, "collect_interactions_mutu": 48, "interactions_mutu": 48, "collect_interactions_neg": 48, "interactions_neg": 48, "collect_interactions_non_direct": 48, "interactions_non_direct": 48, "collect_interactions_non_directed_0": 48, "interactions_non_directed_0": 48, "collect_interactions_posit": 48, "interactions_posit": 48, "collect_interactions_sign": 48, "interactions_sign": 48, "collect_interactions_undirect": 48, "interactions_undirect": 48, "collect_interactions_undirected_0": 48, "interactions_undirected_0": 48, "collect_label": 48, "collect_lncrna_identifi": 48, "lncrna_identifi": 48, "collect_lncrna_label": 48, "lncrna_label": 48, "collect_lncrna": 48, "collect_mirna_identifi": 48, "mirna_identifi": 48, "collect_mirna_label": 48, "mirna_label": 48, "collect_mirna": 48, "collect_protein_identifi": 48, "protein_identifi": 48, "collect_protein_label": 48, "protein_label": 48, "collect_protein": 48, "collect_refer": 48, "collect_resource_nam": 48, "collect_resource_names_via": 48, "resource_names_via": 48, "collect_resourc": 48, "collect_resources_via": 48, "resources_via": 48, "collect_small_molecule_identifi": 48, "small_molecule_identifi": 48, "collect_small_molecule_label": 48, "small_molecule_label": 48, "collect_small_molecul": 48, "collectri": [48, 1089, 1090], "built": [48, 812, 818, 821, 831, 875, 911, 961, 962, 984, 1088, 1089], "immut": 48, "constructor": [48, 1072, 1084, 1087], "count_activated_bi": 48, "pleas": [48, 250, 251, 256, 401, 420, 661, 662, 961, 1089, 1090], "count_activ": 48, "bytes_or_buff": 48, "encod": [48, 170, 939, 940, 1090, 1093], "error": [48, 624, 625, 627, 628, 629, 630, 631, 812, 1089, 1093], "expos": [48, 1018, 1089], "buffer": [48, 170], "decod": 48, "handler": [48, 942, 943, 944, 945, 946, 947, 948, 949, 950, 951, 953, 954], "__str__": 48, "repr": 48, "sy": 48, "getdefaultencod": 48, "strict": [48, 648, 685, 796, 797, 970, 981, 982, 983, 1001, 1090], "count_complex_identifiers_by_data_model": 48, "count_complex_identifiers_by_interaction_typ": 48, "count_complex_identifiers_by_interaction_type_and_data_model": 48, "count_complex_identifiers_by_interaction_type_and_data_model_and_resourc": 48, "count_complex_identifiers_by_refer": 48, "count_complex_identifiers_by_resourc": 48, "count_complex_labels_by_data_model": 48, "count_complex_labels_by_interaction_typ": 48, "count_complex_labels_by_interaction_type_and_data_model": 48, "count_complex_labels_by_interaction_type_and_data_model_and_resourc": 48, "count_complex_labels_by_refer": 48, "count_complex_labels_by_resourc": 48, "count_complexes_by_data_model": 48, "count_complexes_by_interaction_typ": 48, "count_complexes_by_interaction_type_and_data_model": 48, "count_complexes_by_interaction_type_and_data_model_and_resourc": 48, "count_complexes_by_refer": 48, "count_complexes_by_resourc": 48, "count_curation_effort": 48, "count_curation_effort_by_data_model": 48, "count_curation_effort_by_interaction_typ": 48, "count_curation_effort_by_interaction_type_and_data_model": 48, "count_curation_effort_by_interaction_type_and_data_model_and_resourc": 48, "count_curation_effort_by_refer": 48, "count_curation_effort_by_resourc": 48, "count_data_models_by_data_model": 48, "count_data_models_by_interaction_typ": 48, "count_data_models_by_interaction_type_and_data_model": 48, "count_data_models_by_interaction_type_and_data_model_and_resourc": 48, "count_data_models_by_refer": 48, "count_data_models_by_resourc": 48, "count_dataset": 48, "count_datasets_by_data_model": 48, "count_datasets_by_interaction_typ": 48, "count_datasets_by_interaction_type_and_data_model": 48, "count_datasets_by_interaction_type_and_data_model_and_resourc": 48, "count_datasets_by_refer": 48, "count_datasets_by_resourc": 48, "count_degrees_directed_by_data_model": 48, "count_degrees_directed_by_interaction_typ": 48, "count_degrees_directed_by_interaction_type_and_data_model": 48, "count_degrees_directed_by_interaction_type_and_data_model_and_resourc": 48, "count_degrees_directed_by_refer": 48, "count_degrees_directed_by_resourc": 48, "count_degrees_directed_in_by_data_model": 48, "count_degrees_directed_in_by_interaction_typ": 48, "count_degrees_directed_in_by_interaction_type_and_data_model": 48, "count_degrees_directed_in_by_interaction_type_and_data_model_and_resourc": 48, "count_degrees_directed_in_by_refer": 48, "count_degrees_directed_in_by_resourc": 48, "count_degrees_directed_out_by_data_model": 48, "count_degrees_directed_out_by_interaction_typ": 48, "count_degrees_directed_out_by_interaction_type_and_data_model": 48, "count_degrees_directed_out_by_interaction_type_and_data_model_and_resourc": 48, "count_degrees_directed_out_by_refer": 48, "count_degrees_directed_out_by_resourc": 48, "count_degrees_negative_by_data_model": 48, "count_degrees_negative_by_interaction_typ": 48, "count_degrees_negative_by_interaction_type_and_data_model": 48, "count_degrees_negative_by_interaction_type_and_data_model_and_resourc": 48, "count_degrees_negative_by_refer": 48, "count_degrees_negative_by_resourc": 48, "count_degrees_negative_in_by_data_model": 48, "count_degrees_negative_in_by_interaction_typ": 48, "count_degrees_negative_in_by_interaction_type_and_data_model": 48, "count_degrees_negative_in_by_interaction_type_and_data_model_and_resourc": 48, "count_degrees_negative_in_by_refer": 48, "count_degrees_negative_in_by_resourc": 48, "count_degrees_negative_out_by_data_model": 48, "count_degrees_negative_out_by_interaction_typ": 48, "count_degrees_negative_out_by_interaction_type_and_data_model": 48, "count_degrees_negative_out_by_interaction_type_and_data_model_and_resourc": 48, "count_degrees_negative_out_by_refer": 48, "count_degrees_negative_out_by_resourc": 48, "count_degrees_non_directed_by_data_model": 48, "count_degrees_non_directed_by_interaction_typ": 48, "count_degrees_non_directed_by_interaction_type_and_data_model": 48, "count_degrees_non_directed_by_interaction_type_and_data_model_and_resourc": 48, "count_degrees_non_directed_by_refer": 48, "count_degrees_non_directed_by_resourc": 48, "count_degrees_positive_by_data_model": 48, "count_degrees_positive_by_interaction_typ": 48, "count_degrees_positive_by_interaction_type_and_data_model": 48, "count_degrees_positive_by_interaction_type_and_data_model_and_resourc": 48, "count_degrees_positive_by_refer": 48, "count_degrees_positive_by_resourc": 48, "count_degrees_positive_in_by_data_model": 48, "count_degrees_positive_in_by_interaction_typ": 48, "count_degrees_positive_in_by_interaction_type_and_data_model": 48, "count_degrees_positive_in_by_interaction_type_and_data_model_and_resourc": 48, "count_degrees_positive_in_by_refer": 48, "count_degrees_positive_in_by_resourc": 48, "count_degrees_positive_out_by_data_model": 48, "count_degrees_positive_out_by_interaction_typ": 48, "count_degrees_positive_out_by_interaction_type_and_data_model": 48, "count_degrees_positive_out_by_interaction_type_and_data_model_and_resourc": 48, "count_degrees_positive_out_by_refer": 48, "count_degrees_positive_out_by_resourc": 48, "count_degrees_signed_by_data_model": 48, "count_degrees_signed_by_interaction_typ": 48, "count_degrees_signed_by_interaction_type_and_data_model": 48, "count_degrees_signed_by_interaction_type_and_data_model_and_resourc": 48, "count_degrees_signed_by_refer": 48, "count_degrees_signed_by_resourc": 48, "count_degrees_signed_in_by_data_model": 48, "count_degrees_signed_in_by_interaction_typ": 48, "count_degrees_signed_in_by_interaction_type_and_data_model": 48, "count_degrees_signed_in_by_interaction_type_and_data_model_and_resourc": 48, "count_degrees_signed_in_by_refer": 48, "count_degrees_signed_in_by_resourc": 48, "count_degrees_signed_out_by_data_model": 48, "count_degrees_signed_out_by_interaction_typ": 48, "count_degrees_signed_out_by_interaction_type_and_data_model": 48, "count_degrees_signed_out_by_interaction_type_and_data_model_and_resourc": 48, "count_degrees_signed_out_by_refer": 48, "count_degrees_signed_out_by_resourc": 48, "count_degrees_undirected_by_data_model": 48, "count_degrees_undirected_by_interaction_typ": 48, "count_degrees_undirected_by_interaction_type_and_data_model": 48, "count_degrees_undirected_by_interaction_type_and_data_model_and_resourc": 48, "count_degrees_undirected_by_refer": 48, "count_degrees_undirected_by_resourc": 48, "count_entities_by_data_model": 48, "count_entities_by_interaction_typ": 48, "count_entities_by_interaction_type_and_data_model": 48, "count_entities_by_interaction_type_and_data_model_and_resourc": 48, "count_entities_by_refer": 48, "count_entities_by_resourc": 48, "count_evid": 48, "count_evidences_by_data_model": 48, "count_evidences_by_interaction_typ": 48, "count_evidences_by_interaction_type_and_data_model": 48, "count_evidences_by_interaction_type_and_data_model_and_resourc": 48, "count_evidences_by_refer": 48, "count_evidences_by_resourc": 48, "count_identifiers_by_data_model": 48, "count_identifiers_by_interaction_typ": 48, "count_identifiers_by_interaction_type_and_data_model": 48, "count_identifiers_by_interaction_type_and_data_model_and_resourc": 48, "count_identifiers_by_refer": 48, "count_identifiers_by_resourc": 48, "count_interaction_types_by_data_model": 48, "count_interaction_types_by_interaction_typ": 48, "count_interaction_types_by_interaction_type_and_data_model": 48, "count_interaction_types_by_interaction_type_and_data_model_and_resourc": 48, "count_interaction_types_by_refer": 48, "count_interaction_types_by_resourc": 48, "count_interactions_0_by_data_model": 48, "count_interactions_0_by_interaction_typ": 48, "count_interactions_0_by_interaction_type_and_data_model": 48, "count_interactions_0_by_interaction_type_and_data_model_and_resourc": 48, "count_interactions_0_by_refer": 48, "count_interactions_0_by_resourc": 48, "count_interactions_by_data_model": 48, "count_interactions_by_interaction_typ": [48, 1090], "count_interactions_by_interaction_type_and_data_model": 48, "count_interactions_by_interaction_type_and_data_model_and_resourc": 48, "count_interactions_by_refer": 48, "count_interactions_by_resourc": 48, "count_interactions_directed_by_data_model": 48, "count_interactions_directed_by_interaction_typ": 48, "count_interactions_directed_by_interaction_type_and_data_model": 48, "count_interactions_directed_by_interaction_type_and_data_model_and_resourc": 48, "count_interactions_directed_by_refer": 48, "count_interactions_directed_by_resourc": 48, "count_interactions_mutual_by_data_model": 48, "count_interactions_mutual_by_interaction_typ": 48, "count_interactions_mutual_by_interaction_type_and_data_model": 48, "count_interactions_mutual_by_interaction_type_and_data_model_and_resourc": 48, "count_interactions_mutual_by_refer": 48, "count_interactions_mutual_by_resourc": 48, "count_interactions_negative_by_data_model": 48, "count_interactions_negative_by_interaction_typ": 48, "count_interactions_negative_by_interaction_type_and_data_model": 48, "count_interactions_negative_by_interaction_type_and_data_model_and_resourc": 48, "count_interactions_negative_by_refer": 48, "count_interactions_negative_by_resourc": 48, "count_interactions_non_directed_0": 48, "count_interactions_non_directed_0_by_data_model": 48, "count_interactions_non_directed_0_by_interaction_typ": 48, "count_interactions_non_directed_0_by_interaction_type_and_data_model": 48, "count_interactions_non_directed_0_by_interaction_type_and_data_model_and_resourc": 48, "count_interactions_non_directed_0_by_refer": 48, "count_interactions_non_directed_0_by_resourc": 48, "count_interactions_non_directed_by_data_model": 48, "count_interactions_non_directed_by_interaction_typ": 48, "count_interactions_non_directed_by_interaction_type_and_data_model": 48, "count_interactions_non_directed_by_interaction_type_and_data_model_and_resourc": 48, "count_interactions_non_directed_by_refer": 48, "count_interactions_non_directed_by_resourc": 48, "count_interactions_positive_by_data_model": 48, "count_interactions_positive_by_interaction_typ": 48, "count_interactions_positive_by_interaction_type_and_data_model": 48, "count_interactions_positive_by_interaction_type_and_data_model_and_resourc": 48, "count_interactions_positive_by_refer": 48, "count_interactions_positive_by_resourc": 48, "count_interactions_signed_by_data_model": 48, "count_interactions_signed_by_interaction_typ": 48, "count_interactions_signed_by_interaction_type_and_data_model": 48, "count_interactions_signed_by_interaction_type_and_data_model_and_resourc": 48, "count_interactions_signed_by_refer": 48, "count_interactions_signed_by_resourc": 48, "count_interactions_undirected_0": 48, "count_interactions_undirected_0_by_data_model": 48, "count_interactions_undirected_0_by_interaction_typ": 48, "count_interactions_undirected_0_by_interaction_type_and_data_model": 48, "count_interactions_undirected_0_by_interaction_type_and_data_model_and_resourc": 48, "count_interactions_undirected_0_by_refer": 48, "count_interactions_undirected_0_by_resourc": 48, "count_interactions_undirected_by_data_model": 48, "count_interactions_undirected_by_interaction_typ": 48, "count_interactions_undirected_by_interaction_type_and_data_model": 48, "count_interactions_undirected_by_interaction_type_and_data_model_and_resourc": 48, "count_interactions_undirected_by_refer": 48, "count_interactions_undirected_by_resourc": 48, "count_labels_by_data_model": 48, "count_labels_by_interaction_typ": 48, "count_labels_by_interaction_type_and_data_model": 48, "count_labels_by_interaction_type_and_data_model_and_resourc": 48, "count_labels_by_refer": 48, "count_labels_by_resourc": 48, "count_lncrna_identifiers_by_data_model": 48, "count_lncrna_identifiers_by_interaction_typ": 48, "count_lncrna_identifiers_by_interaction_type_and_data_model": 48, "count_lncrna_identifiers_by_interaction_type_and_data_model_and_resourc": 48, "count_lncrna_identifiers_by_refer": 48, "count_lncrna_identifiers_by_resourc": 48, "count_lncrna_labels_by_data_model": 48, "count_lncrna_labels_by_interaction_typ": 48, "count_lncrna_labels_by_interaction_type_and_data_model": 48, "count_lncrna_labels_by_interaction_type_and_data_model_and_resourc": 48, "count_lncrna_labels_by_refer": 48, "count_lncrna_labels_by_resourc": 48, "count_lncrnas_by_data_model": 48, "count_lncrnas_by_interaction_typ": 48, "count_lncrnas_by_interaction_type_and_data_model": 48, "count_lncrnas_by_interaction_type_and_data_model_and_resourc": 48, "count_lncrnas_by_refer": 48, "count_lncrnas_by_resourc": 48, "count_mirna_identifiers_by_data_model": 48, "count_mirna_identifiers_by_interaction_typ": 48, "count_mirna_identifiers_by_interaction_type_and_data_model": 48, "count_mirna_identifiers_by_interaction_type_and_data_model_and_resourc": 48, "count_mirna_identifiers_by_refer": 48, "count_mirna_identifiers_by_resourc": 48, "count_mirna_labels_by_data_model": 48, "count_mirna_labels_by_interaction_typ": 48, "count_mirna_labels_by_interaction_type_and_data_model": 48, "count_mirna_labels_by_interaction_type_and_data_model_and_resourc": 48, "count_mirna_labels_by_refer": 48, "count_mirna_labels_by_resourc": 48, "count_mirnas_by_data_model": 48, "count_mirnas_by_interaction_typ": 48, "count_mirnas_by_interaction_type_and_data_model": 48, "count_mirnas_by_interaction_type_and_data_model_and_resourc": 48, "count_mirnas_by_refer": 48, "count_mirnas_by_resourc": 48, "count_partn": 48, "count_post_transcriptionally_activated_bi": 48, "count_post_transcriptionally_activ": 48, "count_post_transcriptionally_regulated_bi": 48, "count_post_transcriptionally_regul": 48, "count_post_transcriptionally_suppressed_bi": 48, "count_post_transcriptionally_suppress": 48, "count_post_translationally_activated_bi": 48, "count_post_translationally_activ": 48, "count_post_translationally_regulated_bi": 48, "count_post_translationally_regul": 48, "count_post_translationally_suppressed_bi": 48, "count_post_translationally_suppress": 48, "count_protein_identifiers_by_data_model": 48, "count_protein_identifiers_by_interaction_typ": 48, "count_protein_identifiers_by_interaction_type_and_data_model": 48, "count_protein_identifiers_by_interaction_type_and_data_model_and_resourc": 48, "count_protein_identifiers_by_refer": 48, "count_protein_identifiers_by_resourc": 48, "count_protein_labels_by_data_model": 48, "count_protein_labels_by_interaction_typ": 48, "count_protein_labels_by_interaction_type_and_data_model": 48, "count_protein_labels_by_interaction_type_and_data_model_and_resourc": 48, "count_protein_labels_by_refer": 48, "count_protein_labels_by_resourc": 48, "count_proteins_by_data_model": 48, "count_proteins_by_interaction_typ": 48, "count_proteins_by_interaction_type_and_data_model": 48, "count_proteins_by_interaction_type_and_data_model_and_resourc": 48, "count_proteins_by_refer": 48, "count_proteins_by_resourc": 48, "count_references_by_data_model": 48, "count_references_by_interaction_typ": 48, "count_references_by_interaction_type_and_data_model": 48, "count_references_by_interaction_type_and_data_model_and_resourc": 48, "count_references_by_refer": 48, "count_references_by_resourc": 48, "count_regulated_bi": 48, "count_regul": 48, "count_resource_names_by_data_model": 48, "count_resource_names_by_interaction_typ": 48, "count_resource_names_by_interaction_type_and_data_model": 48, "count_resource_names_by_interaction_type_and_data_model_and_resourc": 48, "count_resource_names_by_refer": 48, "count_resource_names_by_resourc": 48, "count_resource_names_via_by_data_model": 48, "count_resource_names_via_by_interaction_typ": 48, "count_resource_names_via_by_interaction_type_and_data_model": 48, "count_resource_names_via_by_interaction_type_and_data_model_and_resourc": 48, "count_resource_names_via_by_refer": 48, "count_resource_names_via_by_resourc": 48, "count_resources_by_data_model": 48, "count_resources_by_interaction_typ": 48, "count_resources_by_interaction_type_and_data_model": 48, "count_resources_by_interaction_type_and_data_model_and_resourc": 48, "count_resources_by_refer": 48, "count_resources_by_resourc": 48, "count_resources_via_by_data_model": 48, "count_resources_via_by_interaction_typ": 48, "count_resources_via_by_interaction_type_and_data_model": 48, "count_resources_via_by_interaction_type_and_data_model_and_resourc": 48, "count_resources_via_by_refer": 48, "count_resources_via_by_resourc": 48, "count_small_molecule_identifiers_by_data_model": 48, "count_small_molecule_identifiers_by_interaction_typ": 48, "count_small_molecule_identifiers_by_interaction_type_and_data_model": 48, "count_small_molecule_identifiers_by_interaction_type_and_data_model_and_resourc": 48, "count_small_molecule_identifiers_by_refer": 48, "count_small_molecule_identifiers_by_resourc": 48, "count_small_molecule_labels_by_data_model": 48, "count_small_molecule_labels_by_interaction_typ": 48, "count_small_molecule_labels_by_interaction_type_and_data_model": 48, "count_small_molecule_labels_by_interaction_type_and_data_model_and_resourc": 48, "count_small_molecule_labels_by_refer": 48, "count_small_molecule_labels_by_resourc": 48, "count_small_molecules_by_data_model": 48, "count_small_molecules_by_interaction_typ": 48, "count_small_molecules_by_interaction_type_and_data_model": 48, "count_small_molecules_by_interaction_type_and_data_model_and_resourc": 48, "count_small_molecules_by_refer": 48, "count_small_molecules_by_resourc": 48, "count_suppressed_bi": 48, "count_suppress": 48, "count_transcriptionally_activated_bi": 48, "count_transcriptionally_activ": 48, "count_transcriptionally_regulated_bi": 48, "count_transcriptionally_regul": 48, "count_transcriptionally_suppressed_bi": 48, "count_transcriptionally_suppress": 48, "curation_effort_by_data_model": 48, "curation_effort_by_interaction_typ": 48, "curation_effort_by_interaction_type_and_data_model": 48, "curation_effort_by_interaction_type_and_data_model_and_resourc": 48, "curation_effort_by_refer": 48, "curation_effort_by_resourc": 48, "direction_consist": 48, "statist": [48, 1090], "total_direct": 48, "shared_direct": 48, "overlap": [48, 911, 1076, 1077, 1078, 1079, 1080, 1081, 1090], "consistent_edg": 48, "inconsistent_edg": 48, "inconsist": 48, "total_consist": 48, "sum": 48, "total_inconsist": 48, "entity_by_id": 48, "entity_by_label": 48, "evidences_by_data_model": 48, "evidences_by_interaction_typ": 48, "evidences_by_interaction_type_and_data_model": 48, "evidences_by_interaction_type_and_data_model_and_resourc": 48, "evidences_by_refer": 48, "evidences_by_resourc": 48, "extra_direct": [48, 911], "use_laudanna": 48, "use_str": 48, "directionextra": 48, "curat": [48, 107, 173, 205, 247, 249, 250, 251, 253, 255, 256, 274, 404, 405, 530, 540, 542, 544, 557, 559, 560, 647, 649, 651, 652, 918, 919, 1093], "give": [48, 863, 870, 874, 881, 956, 1015, 1018, 1027, 1090], "suffici": [48, 921], "find_path": 48, "end": [48, 269, 456, 457, 458, 610, 620, 878, 882, 970, 981, 983, 1090], "maxlen": 48, "minlen": 48, "silent": [48, 939, 1015, 1018, 1027], "find": [48, 557, 970, 981, 992, 999, 1015, 1089, 1090], "path": [48, 112, 197, 262, 366, 730, 793, 911, 932, 933, 935, 939, 969, 1018, 1089, 1090], "motif": [48, 243, 420, 497, 498, 499, 766, 876, 883, 1043, 1090], "length": [48, 610, 616, 812, 818, 821, 831, 1090], "search": [48, 812, 818, 821, 831, 969, 1015, 1064], "subnetwork": [48, 761], "accept": [48, 173, 408, 961, 971, 1072, 1084, 1087, 1090, 1093], "opposit": [48, 970, 1090], "maximum": [48, 155], "step": [48, 346, 351, 356, 911, 951, 956, 970, 1090], "longest": 48, "minimum": [48, 757, 760, 761], "indic": [48, 155, 761, 939, 961, 1076, 1077, 1078, 1079, 1080, 1081, 1084, 1086, 1087, 1090], "progress": [48, 939, 1018], "bar": [48, 956, 1018], "relev": [48, 95, 96, 1090], "shorter": 48, "last": [48, 902, 970, 981, 990, 992, 994, 997, 999, 1008, 1018, 1090], "longer": [48, 249, 255, 969, 970, 971, 1090], "remain": [48, 970, 1090], "discard": [48, 797, 970], "motiv": 48, "let": [48, 943, 1090], "sai": [48, 1090], "estrogen": [48, 1090], "factor": [48, 776, 1090, 1093], "esr1": [48, 1090], "transcription": 48, "translation": 48, "n": [48, 344, 345, 346, 349, 350, 351, 354, 355, 356, 568, 569, 764, 994, 997, 1003, 1004, 1007, 1008, 1090], "post_transl": [48, 868, 911, 1090], "interest": [48, 345, 350, 355, 661, 662, 875, 1088, 1089, 1091], "feedback": [48, 420], "from_igraph": 48, "igraph": [48, 964, 967, 1069, 1072, 1084, 1086, 1087, 1088, 1089, 1092], "graph": [48, 314, 963, 964, 967, 1068, 1069, 1072, 1075, 1082, 1084, 1086, 1087, 1090, 1092], "from_pickl": 48, "pickl": [48, 375, 784, 793, 969, 973, 1088, 1089], "file": [48, 53, 60, 95, 96, 100, 104, 112, 147, 168, 169, 170, 171, 197, 205, 206, 250, 251, 256, 258, 262, 310, 345, 363, 366, 368, 370, 375, 490, 499, 617, 621, 649, 651, 652, 653, 658, 681, 715, 716, 719, 730, 743, 793, 848, 911, 932, 939, 940, 942, 943, 969, 970, 973, 1015, 1018, 1027, 1046, 1088, 1089, 1092], "get_curation_effort": 48, "get_evid": 48, "get_organ": 48, "occur": 48, "htp_interact": 48, "threshold": [48, 155, 568, 569, 756, 994, 997, 1003, 1004, 1007, 1008, 1090], "50": [48, 927, 1090], "ignore_direct": 48, "high": [48, 116, 404, 405, 861, 895, 990, 997, 1003, 1004, 1007, 1008, 1090], "throughput": [48, 87, 88, 195, 330, 331, 637, 895, 918, 1090], "studi": [48, 895, 1089, 1090], "htp_refer": 48, "cite": [48, 87, 88], "init_network": [48, 921, 1090], "reread": 48, "redownload": 48, "keep_raw": 48, "top_cal": 48, "cache_fil": 48, "first_n": 48, "among": [48, 858, 911, 970, 981, 1027, 1090, 1093], "pathwai": [48, 115, 116, 173, 191, 206, 344, 349, 354, 453, 455, 465, 469, 472, 476, 477, 478, 560, 667, 668, 717, 722, 723, 750, 911, 914, 919, 942, 943, 944, 945, 946, 947, 948, 949, 950, 951, 953, 954, 1089, 1090, 1093], "recurs": 48, "after": [48, 971, 1018, 1027, 1090, 1093], "few": [48, 718, 1089, 1090, 1092], "interaction_by_id": 48, "similarli": [48, 1090], "interaction_by_label": 48, "label_a": 48, "label_b": 48, "load_from_pickl": 48, "load_resourc": [48, 942, 943, 944, 945, 946, 947, 948, 949, 950, 951, 953, 954, 1090], "clean": [48, 715, 1011, 1040, 1090], "attach": [48, 939, 1076, 1077, 1078, 1079, 1080, 1081], "input_format": [48, 914, 915, 916, 917, 918, 919, 920, 921, 969, 970, 981, 983, 1089, 1090], "networkinput": [48, 911, 914, 915, 916, 917, 918, 919, 920, 921, 1090], "definit": [48, 359, 382, 796, 860, 861, 911, 928, 969, 970, 1088, 1089, 1092], "download": [48, 82, 85, 87, 88, 93, 95, 96, 102, 104, 107, 112, 115, 116, 131, 147, 180, 199, 211, 212, 221, 227, 229, 234, 269, 306, 308, 324, 327, 335, 363, 368, 370, 375, 385, 404, 405, 420, 434, 435, 436, 437, 455, 467, 480, 487, 488, 514, 532, 551, 552, 553, 572, 577, 582, 583, 614, 617, 621, 635, 637, 648, 649, 652, 655, 656, 664, 690, 694, 716, 718, 719, 730, 748, 757, 760, 761, 762, 764, 776, 781, 782, 793, 794, 795, 797, 798, 815, 848, 850, 874, 897, 939, 943, 944, 950, 951, 969, 970, 1011, 1015, 1040, 1088, 1089, 1092], "moment": [48, 1090], "clean_graph": 48, "cach": [48, 96, 287, 375, 419, 420, 552, 617, 621, 649, 651, 652, 653, 684, 694, 716, 798, 939, 942, 943, 944, 945, 946, 947, 950, 951, 969, 1011, 1040, 1088, 1089], "bypass": [48, 812, 818, 821, 831], "omit": [48, 990, 992, 994, 997, 999, 1008, 1018], "similar": [48, 568, 569, 610, 933, 994, 997, 1003, 1004, 1007, 1008, 1064, 1089, 1090, 1093], "column": [48, 84, 85, 104, 170, 209, 346, 351, 356, 569, 678, 764, 990, 992, 994, 997, 999, 1003, 1008, 1089, 1090, 1093], "dtype": 48, "mirna_target": [48, 911, 1090], "mrna": [48, 289, 290, 1092, 1093], "numof_interactions_per_refer": 48, "counter": 48, "organisms_check": 48, "remove_mismatch": 48, "remove_nonspecif": 48, "scan": [48, 1090], "too": [48, 205, 1090], "discrep": 48, "zero": [48, 748, 1079, 1080], "return_interact": 48, "post_transcriptionally_activated_bi": 48, "post_transcriptionally_activ": 48, "post_transcriptionally_regulated_bi": 48, "post_transcriptionally_regul": 48, "post_transcriptionally_suppressed_bi": 48, "post_transcriptionally_suppress": 48, "post_translationally_activated_bi": 48, "post_translationally_activ": 48, "post_translationally_regulated_bi": 48, "post_translationally_regul": 48, "post_translationally_suppressed_bi": 48, "post_translationally_suppress": 48, "random_interact": 48, "pick": [48, 970, 982], "random": [48, 970, 982, 1018, 1090], "regulated_bi": 48, "remove_interact": 48, "remove_nod": 48, "leav": 48, "remove_zero_degre": 48, "reset": [48, 970, 971], "save_to_pickl": [48, 1090], "save": [48, 366, 793, 969, 1088, 1089], "summaries_tab": 48, "outfil": [48, 245, 658], "return_t": 48, "label_typ": 48, "v": [48, 209, 900, 1090], "write": [48, 969, 1015, 1088, 1089], "suppressed_bi": 48, "suppress": [48, 1090], "to_igraph": 48, "original_resourc": 48, "transcriptionally_activated_bi": 48, "transcriptionally_activ": 48, "transcriptionally_regulated_bi": 48, "transcriptionally_regul": 48, "transcriptionally_suppressed_bi": 48, "transcriptionally_suppress": 48, "total": [50, 116, 269, 956, 1018, 1079, 1080], "by_resourc": 50, "by_categori": 50, "percent": [50, 956], "shared_res_cat": 50, "unique_res_cat": 50, "percent_res_cat": 50, "shared_cat": 50, "unique_cat": 50, "percent_cat": 50, "resource_cat": 50, "cat_resourc": 50, "13": [50, 178, 247, 404, 405, 858, 1088, 1090], "15": [50, 245, 1090], "14": [50, 247, 407, 911, 1088, 1090], "11": [50, 245, 247, 858, 1088, 1090], "12": [50, 247, 600, 858, 1088, 1090], "10": [50, 178, 247, 278, 279, 280, 281, 287, 351, 356, 432, 456, 457, 458, 482, 677, 684, 847, 853, 855, 858, 970, 997, 1015, 1032, 1068, 1088, 1090, 1093], "use_omnipath": 52, "licens": [53, 54, 107, 401, 408, 911, 1088, 1092], "page": [53, 112, 269, 911, 1089, 1090, 1091, 1093], "biomart": [53, 969, 973, 1090], "goos": [53, 304, 309, 314, 318], "templat": [53, 1090], "configur": [53, 1090], "print": [54, 55, 806, 944, 945, 946, 947, 948, 949, 1018, 1064, 1090], "copyright": [54, 1090], "point": [54, 557, 610, 697, 812, 821, 831, 911, 1089, 1090], "loglevel": 55, "basic": [55, 821, 831, 1088], "session": [55, 911, 1088, 1089], "tf": [58, 115, 116, 163, 164, 247, 248, 249, 250, 251, 253, 255, 256, 582, 583, 776, 791, 1090, 1092, 1093], "keep_in_complex_interact": 60, "expans": [60, 748], "sif": [61, 1090, 1092], "distribut": [61, 1089], "offici": [61, 1090], "websit": [61, 552, 812, 821, 831], "adr_class": 66, "badd": [66, 68, 70, 74], "namedtupl": [66, 67, 68, 69, 70, 155, 156, 216, 217, 218, 258, 330, 331, 732, 733, 734, 735], "child": [67, 74, 969, 1090], "parent": [67, 74, 382, 681, 858, 859, 861, 963, 1019, 1020, 1021, 1023, 1026, 1028, 1029, 1090], "adrecsadr": 67, "synonym": [68, 70, 73, 351, 356, 382, 577, 681, 795, 877, 911, 1052, 1090], "drugbank": [68, 73, 216, 218], "pubchem_cid": 68, "mesh": [68, 73], "kegg": [68, 73, 115, 116, 173, 249, 255, 463, 464, 465, 466, 467, 468, 469, 470, 471, 472, 473, 474, 475, 476, 477, 478, 921, 1090], "tdd": [68, 73], "drug_badd": 69, "adr_badd": 69, "adr": [69, 71, 72, 577], "adrecs_class": 70, "meddra": [70, 737, 738, 739], "return_df": [71, 72, 73, 173, 215, 217, 218, 234, 235, 236, 237, 238, 239, 240, 292, 293, 344, 349, 354, 568, 569, 574, 575, 576, 577, 578, 696, 721, 722, 723, 724, 1090], "adrecsterm": 71, "advers": [71, 566, 574, 804, 1090], "reaction": [71, 574, 911, 1029, 1090, 1093], "ontologi": [71, 74, 314, 380, 381, 382, 383, 551, 553, 664, 722, 870, 961, 962, 963, 964, 967, 973, 1088, 1089, 1092], "term": [71, 74, 301, 303, 304, 305, 309, 310, 311, 313, 314, 315, 317, 318, 319, 320, 381, 382, 383, 401, 408, 434, 437, 572, 961, 962, 963, 1090], "adrecsdrugadr": 72, "pd": [72, 173, 234, 235, 236, 237, 238, 239, 240, 293, 349, 351, 354, 356, 569, 574, 575, 576, 577, 578, 697, 721, 722, 723, 724, 1090], "iupac": [73, 681, 1090], "http": [73, 94, 107, 108, 128, 129, 130, 131, 132, 133, 134, 135, 136, 146, 148, 178, 183, 184, 269, 287, 399, 400, 401, 408, 420, 482, 530, 540, 551, 552, 553, 559, 560, 568, 569, 585, 586, 617, 626, 677, 748, 781, 782, 801, 807, 812, 818, 821, 831, 847, 939, 969, 970, 1015, 1064, 1069, 1089, 1093], "www": [73, 94, 107, 108, 128, 129, 130, 131, 132, 133, 134, 135, 136, 178, 287, 482, 530, 540, 617, 677, 807, 812, 818, 821, 831, 847, 969, 970, 1015, 1064, 1069, 1090], "bio": 73, "org": [73, 94, 107, 108, 128, 129, 130, 131, 132, 133, 134, 135, 136, 178, 324, 401, 482, 530, 551, 552, 553, 559, 560, 568, 569, 617, 677, 812, 818, 821, 831, 847, 875, 969, 970, 1015, 1069, 1090, 1093], "jsp": [73, 551, 552, 553], "adrecschildpar": 74, "numer": [74, 287, 806, 809, 833, 1064, 1090], "url": [81, 83, 112, 231, 269, 276, 302, 577, 730, 812, 887, 939, 952, 1090, 1093], "express": [82, 83, 84, 85, 208, 249, 250, 251, 253, 255, 256, 575, 625, 630, 759, 861, 961, 962, 1015, 1089, 1090, 1093], "commonli": 82, "shown": [82, 85, 91, 577, 795, 1090], "biogps_dataset": [82, 84, 85], "profil": [83, 84, 1090], "biogpsdataset": 84, "tissu": [84, 85, 1015, 1090, 1093], "cell": [84, 85, 150, 335, 336, 585, 586, 853, 861, 961, 1090, 1093], "row": [84, 85, 209, 346, 351, 356, 738, 880, 990, 992, 994, 997, 999, 1008, 1090, 1093], "microarrai": [84, 85, 91, 92, 93, 863, 969, 1090], "probe": [84, 85, 91, 93, 863, 969, 1090], "htp_limit": [87, 88], "ltp": [87, 88], "low": [87, 88, 195, 637, 918], "physic": [88, 757, 760, 761], "multi": [88, 209, 877, 1090, 1092], "target_organ": 90, "10090": [90, 322, 748, 812, 818, 821, 831, 1089, 1090, 1093], "extra_field": 90, "external_gene_nam": 90, "ensembl": [90, 91, 93, 94, 970, 973, 981, 983, 990, 992, 994, 997, 999, 1003, 1004, 1007, 1008, 1089, 1090], "orthologu": [90, 990, 992, 994, 999], "homologi": [90, 115, 116, 1088, 1090, 1093], "relat": [90, 152, 205, 263, 285, 310, 313, 315, 437, 463, 464, 465, 466, 468, 469, 470, 471, 472, 474, 475, 476, 477, 478, 568, 569, 963, 990, 994, 997, 1003, 1004, 1007, 1008, 1018, 1089, 1090, 1093], "array_typ": 91, "peptid": [91, 93, 94, 1090], "webpag": [91, 112, 221, 551, 553, 730, 793, 794, 795, 798, 848, 1015, 1090, 1093], "biomart_microarray_typ": 91, "vendor": 93, "arrai": [93, 346, 351, 356, 911, 1090], "minut": [93, 1089, 1090], "affi": [93, 1090], "illumina": 93, "agil": [93, 1090], "codelink": 93, "phalanx": 93, "hsapiens_gene_ensembl": 94, "servic": [94, 269, 314, 571, 572, 681, 816, 875, 969, 1064, 1089, 1090, 1092], "martview": 94, "repositori": [95, 848, 1092], "bioservic": [95, 97, 100], "individu": [95, 467, 566, 970, 981, 1015, 1090], "pars": [95, 345, 346, 350, 351, 355, 356, 614, 626, 1018, 1046, 1090], "enter": 95, "model_id": [96, 100], "integr": [96, 754, 921, 1088, 1090, 1092], "fetch": [97, 630, 683, 875, 1069, 1090], "smbl": 97, "submiss": 97, "date": [97, 250, 251, 256, 310, 314, 813, 1064, 1090], "author": [97, 499, 661, 662, 1090], "verbos": [98, 422, 946, 947, 1090, 1092], "eg": 100, "descript": [100, 678, 882, 956, 1090, 1092], "associ": [100, 180, 576, 578, 667, 668, 760, 1072, 1084, 1086, 1087, 1090], "signal": [102, 566, 635, 804, 861, 1088, 1093], "ma": 102, "ayan": 102, "2005": [102, 399, 1090], "scraper": 105, "cancerdrugs_db": [105, 106], "pubchem": [106, 108, 135, 216, 218, 495, 736, 737, 739, 1090], "cancer": [107, 108, 110, 188, 191, 439, 670, 671, 1090], "world": 107, "anticancerfund": [107, 108], "en": [107, 108, 269, 1090], "cancerdrug": [107, 108], "describ": [108, 117, 131, 571, 812, 818, 821, 831, 1064], "funciton": 110, "supp_url": 112, "article_url": 112, "supplementari": [112, 278, 279, 280, 281, 490, 677, 678, 690, 730, 847, 853, 861], "materi": [112, 677, 730], "journal": [112, 730, 1015], "articl": [112, 540, 801, 1090], "extend": [114, 115, 116, 117, 1027, 1090], "shellycod": [114, 115, 116, 117], "core": [114, 115, 116, 117, 209, 861, 1089, 1090, 1092], "cellcall_download_al": 115, "incomprehens": [123, 124, 125, 146, 147, 148], "fall": [123, 124, 125, 146, 147, 148], "back": [123, 124, 125, 146, 147, 148, 970], "fhe": 124, "r": [124, 248, 939, 940, 1089, 1090, 1093], "rda": 124, "raw": [124, 176, 456, 583, 648, 677, 697, 748, 816, 1015, 1042, 1043, 1084, 1086, 1087, 1089, 1090], "ligand_receptor": [125, 911, 1090, 1092], "cofactor": 125, "agonist": 125, "antagonist": 125, "coreceptor": 125, "ligand_loc": 127, "receptor_loc": 127, "pmid": [127, 683, 684, 685, 686, 855, 894, 1090], "rna": [128, 129, 130, 131, 132, 133, 134, 135, 136, 1092], "societi": [128, 129, 130, 131, 132, 133, 134, 135, 136], "preprocess": [132, 135, 180, 199, 385, 456, 458, 552, 648, 649, 651, 652, 653, 656, 664, 781, 782, 793, 812, 1042, 1043, 1089], "cid": [135, 681, 734, 736, 737, 738, 739], "cellinker_complexes_raw": 137, "guess": [137, 970, 975], "receptor_class": 139, "peripher": [139, 1090, 1093], "secret": [139, 197, 520, 939, 1090, 1093], "secreted_class": 139, "transmembran": [139, 1090, 1093], "integrin": [139, 1090], "add_complex_annot": 144, "deprec": [144, 229, 300, 301, 312], "wrong": [144, 1090], "tcm": [146, 148], "zju": [146, 148], "edu": [146, 148, 408, 544], "cn": [146, 148, 544, 1090], "php": [146, 148, 408, 544, 939, 1090], "filenam": [147, 939, 941, 1018, 1068, 1090], "lr_pair": 147, "gene_info": 147, "gene2ensembl": 147, "immun": 150, "marker": [150, 585, 586], "teichlab": 150, "celltypist_wiki": 150, "standard_rel": 152, "pchembl_value_non": 152, "todo": 152, "pchembl": 152, "standard": [152, 274, 970, 981, 983, 1064, 1090], "standard_unit": 152, "why": [152, 1090], "data_validity_com": 152, "assai": 153, "document": [154, 1089, 1090, 1091], "convers": [154, 875, 969, 1088, 1090, 1092], "max_phase_threshold": 155, "phase": 155, "mechan": [156, 766, 1090], "variant": [159, 160, 161, 397, 456, 457, 458, 1089, 1090], "citat": 160, "protein_cod": [163, 164], "collectri_raw": 163, "csv": [166, 171, 250, 251, 256, 677, 678, 1090], "old": [166, 250, 251, 256, 848, 911, 956, 970, 981, 983, 1089, 1090], "glom": [167, 168, 269, 572], "spec": [167, 168, 269, 572], "protect": 167, "coalesc": 167, "io": [168, 169, 183, 184, 269], "arbitrari": [168, 1090, 1093], "depth": [168, 712], "read": [169, 170, 171, 269, 490, 491, 492, 493, 499, 617, 626, 677, 743, 911, 940, 943, 950, 951, 969, 973, 1015, 1064, 1088, 1089, 1092], "through": [169, 895, 1089, 1090], "col": [170, 990, 992, 994, 997, 999, 1008, 1067, 1090], "fileobject": 170, "sep": [170, 941, 1023], "sep2": 170, "rem": 170, "hdr": 170, "ascii": 170, "open": [170, 363, 368, 574, 575, 576, 577, 578, 686, 939, 940, 1015, 1018, 1089, 1090], "stringio": 170, "subfield": 170, "prefix": [170, 287, 956, 1018, 1090], "header": [170, 245, 419, 420, 812, 865, 868, 872, 939, 941, 1046, 1090], "assum": [170, 197, 877, 990, 992, 994, 997, 999, 1008], "replac": [170, 309, 314, 813, 939, 1090], "xls_file": 171, "sheet": [171, 276], "use_openpyxl": 171, "cell_rang": 171, "m": [171, 568, 569, 994, 997, 1003, 1004, 1007, 1008, 1090], "excel": [171, 1090], "xl": 171, "source_db": 173, "wikipathwai": 173, "reactom": [173, 716, 717, 718, 719, 1018], "target_db": 173, "cross": [173, 260, 382, 437], "propos": 173, "user": [173, 188, 197, 232, 258, 259, 260, 261, 262, 263, 757, 760, 761, 941, 1015, 1089, 1090], "predict": [175, 247, 249, 250, 251, 253, 255, 256, 420, 505, 764, 796, 797], "return_detail": 178, "intact": [178, 195, 728, 916, 917, 970, 1090], "ebi": [178, 571, 572, 807, 1064, 1089], "ac": [178, 620, 622, 781, 782, 807, 962, 970, 981, 1064, 1089, 1090], "uk": [178, 807, 1064], "nar": [178, 801, 1090], "oxfordjourn": [178, 1090], "earli": 178, "2014": [178, 400, 407, 848, 1015], "gku975": 178, "pdf": [178, 1067, 1068], "cellular": [180, 1088, 1089], "compart": 180, "score": [180, 443, 568, 569, 576, 578, 757, 760, 761, 764, 993, 994, 1090], "score_threshold": [181, 340, 757, 759, 760, 761], "connectomedb2020": [183, 184, 1090], "asrhou": [183, 184], "github": [183, 184, 1089, 1090], "natmi": [183, 184], "passwd": [188, 232, 258, 259, 260, 261, 262, 263, 941], "credentials_fnam": [188, 258, 259, 260, 261, 262, 263], "cosmic_credenti": 188, "driver": [188, 439], "censu": [188, 776], "sanger": 188, "catalogu": 188, "somat": 188, "mutat": [188, 885], "include_unknown_typ": 190, "consensuspathdb": [194, 195], "cpdb_interact": 195, "hprd": [195, 917, 1090], "biogrid": [195, 916, 917, 1090], "phosphopoint": 195, "mint": 195, "bind": [195, 617, 757, 760, 876, 961, 1090], "from_fil": 197, "requir": [197, 718, 757, 760, 761, 836, 970, 1018, 1089, 1090], "password": [197, 258, 259, 260, 261, 262, 263, 1015], "_credenti": 197, "locat": [197, 691, 861, 971, 1089, 1090, 1092, 1093], "directori": [197, 621, 934, 935, 1089, 1090, 1092], "unchang": [197, 685, 748, 963], "runtimeerror": 197, "catalyt": 199, "tell": [199, 843, 844, 845, 961, 963, 969, 970, 1090, 1093], "relation_typ": 205, "diseas": [205, 206, 381, 463, 464, 465, 466, 467, 470, 476, 576, 578, 588, 589, 624, 630, 675], "directevid": 205, "chemical_gen": 205, "chemical_diseas": 205, "disease_pathwai": 205, "chemical_phenotyp": 205, "gene_diseas": 205, "vocabulary_typ": 206, "vocabulari": 206, "chemic": [206, 757, 1064], "anatomi": 206, "phenotyp": [206, 380, 381, 383, 553], "compendium": 208, "signatur": [208, 209, 667, 668], "cytokin": [208, 209], "perturb": 208, "experi": [208, 234, 235, 236, 557, 1090], "long": [209, 970, 1055, 1089, 1090], "matrix": [209, 514, 517, 568, 569, 997, 1003, 1004, 1007, 1008, 1015, 1090, 1093], "wide": [209, 1090], "action": [215, 217], "chembl": [216, 218, 262, 495, 1064, 1090, 1092], "html": [221, 269, 295, 585, 586, 614, 798, 1015, 1090, 1093], "rescu": [222, 848], "druggabl": [227, 229], "interacton": 228, "Will": 229, "soon": [229, 300, 301, 312, 1090], "genesymbol": [229, 331, 371, 491, 970, 976, 977, 981, 983, 1089, 1090, 1093], "core_onli": 231, "direct_onli": 231, "small_scale_onli": 231, "reason": [232, 420, 1089, 1090], "binary_data": [232, 939], "curl": [232, 1015, 1093], "below": [232, 397, 812, 818, 821, 831, 1089, 1090], "data_origin": 234, "textmin": [234, 239, 240], "knowledg": [234, 237, 238, 557, 677], "jensen": [234, 235, 236, 237, 238, 239, 240], "lab": [234, 235, 236, 237, 238, 239, 240, 408, 487, 488, 848, 850, 1089, 1090], "warn": [234, 239, 240, 1090], "enorm": [234, 239, 240], "ddi": 243, "dmi": 243, "none_valu": 245, "uniprot_a": 245, "uniprot_b": 245, "isoform_a": [245, 881], "isoform_b": [245, 881], "exp_method": 245, "role_a": 245, "role_b": 245, "binding_site_range_a": 245, "binding_site_range_b": 245, "domains_a": 245, "domains_b": 245, "ptm_residue_a": 245, "ptm_residue_b": 245, "ptm_type_mi_a": 245, "ptm_type_mi_b": 245, "ptm_type_a": 245, "ptm_type_b": 245, "19": [245, 1090], "ptm_res_name_a": 245, "ptm_res_name_b": 245, "mutations_a": 245, "mutations_b": 245, "23": [245, 1090], "mutation_effects_a": 245, "mutation_effects_b": 245, "domains_interpro_a": 245, "26": [245, 1090], "domains_interpro_b": 245, "28": [245, 1090], "chipseq": 247, "coexp": 247, "curated_sourc": 247, "chipseq_sourc": 247, "predicted_sourc": 247, "coexp_sourc": 247, "all_sourc": 247, "kegg_pathwai": [247, 249, 255], "packag": [248, 1089, 1090], "complet": [248, 630, 812, 818, 821, 831, 969, 1056, 1089, 1090, 1092], "only_cur": [249, 250, 251, 253, 255, 256], "confidence_pairwis": [249, 255], "regulon": [249, 255, 1093], "chip": [249, 250, 251, 253, 255, 256], "seq": [249, 250, 251, 253, 255, 256, 882, 883, 885, 1027, 1090], "pwm": [249, 250, 251, 253, 255, 256], "hocomoco": [249, 250, 251, 253, 255, 256], "jaspar": [249, 250, 251, 253, 255, 256], "matric": [249, 250, 251, 253, 255, 256], "gtex": [249, 250, 251, 253, 255, 256, 627, 630], "aracn": [249, 250, 251, 253, 255, 256], "As": [249, 255, 945, 946, 1027, 1090, 1093], "version": [249, 250, 251, 255, 256, 401, 404, 405, 551, 552, 553, 592, 600, 848, 911, 1056, 1089, 1090, 1092], "alwai": [249, 255, 377, 382, 928, 970, 983, 1027, 1090], "saezlab": [249, 250, 251, 253, 255, 256, 667, 668, 1089], "2018": [250, 251, 256], "dorothea_interact": [250, 251, 256], "wrapper": [258, 900, 939, 956, 971, 1015, 1090], "xml": [258, 345, 350, 355, 499, 1015, 1018, 1090], "drugbank_drugs_ful": 258, "drugbank_targets_ful": 258, "mail": [258, 259, 260, 261, 262, 263, 1015], "address": [258, 259, 260, 261, 262, 263, 551, 552, 553, 1015, 1090], "regist": [258, 259, 260, 261, 262, 263, 408, 551, 552, 553, 933, 996, 1015], "account": [258, 259, 260, 261, 262, 263, 1090], "drugbank_external_ids_ful": 258, "extern": [258, 437, 505, 1090], "drugbank_properties_ful": 258, "calcul": [258, 427], "statu": [259, 939, 956, 1018, 1090], "pharma_act": [261, 263], "pharmacolog": [261, 263], "target_id_typ": [262, 267, 665, 875, 969, 970, 971, 972, 981, 982, 983, 985, 986, 1090], "ca": [262, 267, 1090], "inchikei": [262, 267, 1090], "inchi": [262, 267, 495, 681, 1064, 1090], "smile": [262, 267, 351, 356, 495, 681, 1064, 1090], "formula": 262, "kegg_compound": 262, "kegg_drug": 262, "pubchem_compound": 262, "pubchem_subst": 262, "chebi": [262, 473, 495, 721, 1090], "pharmgkb": 262, "het": [262, 1090], "login": 262, "credenti": 262, "central": [265, 266, 267, 911, 1090], "comment": [266, 1090], "retain": 266, "inn": 267, "q": [269, 675], "pagin": [269, 1090], "page_length": 269, "500": [269, 313, 315, 419, 420, 812, 818, 821, 831, 1090], "size_param": 269, "page_param": 269, "by_pag": 269, "page_field": 269, "total_field": 269, "totalpag": 269, "record_nam": 269, "append": [269, 911], "until": [269, 1090, 1091], "per": [269, 760, 761, 1015], "readthedoc": 269, "latest": [269, 370, 1090], "tutori": [269, 1089, 1090], "downlod": 274, "manual": [274, 918, 919, 1090], "gold": 274, "init_url": [276, 939], "s11": [278, 279, 280, 281], "1016": [278, 279, 280, 281, 853], "j": [278, 279, 280, 281, 853], "isci": [278, 279, 280, 281], "2019": [278, 279, 280, 281, 677, 1090], "026": [278, 279, 280, 281], "sheikh": [278, 279, 280, 281], "et": [278, 279, 280, 281, 432, 482, 635, 677, 847, 853, 861, 1015, 1090], "al": [278, 279, 280, 281, 432, 482, 635, 677, 847, 853, 861, 1015, 1090], "metadata": [285, 684, 895, 900, 1090], "cache_smal": [287, 684], "metainform": 287, "client": [287, 821, 831, 1064, 1089, 1090], "nlm": [287, 399, 400], "nih": [287, 399, 400, 623, 626, 630, 685], "gov": [287, 399, 400, 626], "book": [287, 1088, 1089], "nbk25499": 287, "chapter4": 287, "interst": 287, "understand": [287, 420, 1090], "strip": [287, 812, 1090], "geoprofil": [287, 1090], "less": [287, 684, 970, 981, 983, 1090], "lower": [287, 317, 318, 319, 320, 553, 568, 569, 662, 684, 739, 994, 997, 1003, 1004, 1007, 1008, 1018, 1049, 1090], "classif": [292, 330, 331, 414], "digit": 292, "ec": [292, 1090], "datasheet": [295, 296, 297, 814, 970], "bs4": [296, 717, 794, 798], "beautifulsoup": [296, 717, 794], "summari": [297, 1090, 1092], "text": [297, 677, 812, 818, 821, 831, 1090], "module_nam": 298, "method_nam": 298, "submodul": [298, 1089, 1090, 1092], "go_id": [300, 1090], "slim": 301, "names_onli": 301, "aspect": [301, 303, 304, 305, 309, 310, 311, 313, 314, 315, 317, 318, 319, 320, 858, 861, 961, 963, 964, 967, 1090, 1093], "f": [301, 303, 304, 305, 309, 310, 311, 313, 314, 315, 317, 318, 319, 320, 900, 964, 967], "p": [301, 303, 304, 305, 309, 310, 311, 313, 314, 315, 317, 318, 319, 320, 667, 668, 964, 967, 1090], "quickgo": [301, 303, 305, 310, 313, 314, 315, 317, 319], "ancestor": [303, 304, 305, 316, 961, 963], "cellular_compon": [303, 304, 305, 309, 310, 311, 313, 314, 315, 317, 318, 319, 320], "molecular_funct": [303, 304, 305, 309, 310, 311, 313, 314, 315, 317, 318, 319, 320], "biological_process": [303, 304, 305, 309, 310, 311, 313, 314, 315, 317, 318, 319, 320], "amigo": [304, 309, 311, 314, 318, 320], "evidence_cod": [306, 308], "goa": [306, 308, 310, 1090], "output": [306, 308, 344, 349, 354, 694, 760, 1064, 1090], "recent": [309, 310, 314, 824, 970, 1089, 1090], "go_annotations_solr": 309, "mysql": [309, 314, 694, 1090, 1092], "sinc": [309, 314, 1090], "dec": [309, 314], "2016": [309, 314], "unfortun": [309, 314, 1090], "ceas": [309, 314], "flexibl": [309, 314, 911, 1090], "perform": [309, 314, 419, 420, 574, 575, 576, 577, 578, 812, 818, 821, 831, 939, 950, 951, 1090], "solr": [309, 311, 314, 320], "far": [309, 314], "featur": [309, 314, 888, 889, 890, 891, 1042, 1043, 1088, 1090], "is_a": 310, "part_of": 310, "go_annotations_goa": 310, "contrari": 310, "super": 310, "slow": [310, 694, 939, 1090], "befor": [311, 911, 956, 1018, 1090], "now": [311, 499, 956, 1015, 1090], "implement": [311, 467, 779, 877, 956, 970, 983, 1015, 1072, 1076, 1077, 1078, 1079, 1080, 1081, 1082, 1086, 1087, 1089, 1092, 1093], "ye": [312, 875], "quickgo_download_s": [313, 315], "descend": [313, 314, 315, 316, 961, 963], "go_terms_solr": [313, 315], "go_descendants_quickgo": 314, "unabl": 314, "nice": [314, 1090], "desc": 316, "turn": [316, 943, 944, 945], "swap": [316, 970], "upper": [317, 318, 319, 320, 553, 662], "graph_attr": 324, "vertex_attr": 324, "edge_attr": 324, "endogen": 327, "process_interact": 327, "process_complex": 327, "guid": [327, 1089, 1090], "pharmacologi": [327, 1090], "microbe_taxon": [330, 331], "microbe_ncbi_tax_id": [330, 331], "gut_microbiota_id": [330, 331], "gutmgeneannot": 332, "microbi": 332, "effector": 332, "top": [332, 346, 351, 356, 574, 575, 576, 577, 578, 782, 812, 821, 831, 906, 1090], "gut": 333, "microbiota": 333, "supplement": [335, 336], "s3": [335, 336, 764], "2012": [335, 336, 490], "150": [335, 336, 1089, 1090], "1068": [335, 336], "1081": [335, 336], "75": [340, 1090], "only_human": 340, "only_sourc": 340, "only_method": 340, "itert": [343, 348, 353], "head": [344, 345, 346, 349, 350, 351, 354, 355, 356, 1090], "purpos": [344, 349, 354, 887, 911, 1090], "weight": [344, 349, 354, 667, 668, 1090], "though": [344, 349, 354, 1090, 1093], "guarante": [344, 349, 354, 1090], "meaning": [344, 349, 354], "id_field": [344, 349, 354], "simple_field": [344, 349, 354], "peek": [344, 345, 346, 349, 350, 351, 354, 355, 356, 1090], "schema": [345, 346, 350, 351, 355, 356, 1090], "cover": [345, 350, 355, 821, 1089, 1090], "nearli": [345, 350, 355], "don": [345, 350, 355, 970, 981, 1089, 1090, 1091, 1093], "task": [345, 350, 355, 956], "metabolite_schema": 345, "proteins_schema": [345, 355, 1090], "your": [345, 350, 355, 1015, 1090, 1093], "own": [345, 350, 355, 1090, 1092], "These": [345, 346, 350, 351, 355, 356, 428, 557, 611, 812, 818, 821, 831, 848, 863, 870, 874, 875, 916, 918, 919, 932, 970, 983, 1018, 1027, 1090, 1093], "deepli": [345, 350, 355], "nest": [345, 346, 350, 351, 355, 356, 456, 457, 458, 812, 818, 821, 831, 1090], "named_field": [346, 351, 356], "simpl": [346, 351, 356, 812, 818, 821, 831, 911, 1027, 1089, 1090, 1093], "sequeti": [346, 351, 356], "special": [346, 351, 356, 616, 911, 1090, 1092], "sub": [346, 351, 356], "expand": [346, 351, 356, 748, 1020, 1022, 1025, 1027, 1029, 1030, 1090], "Be": [346, 351, 356], "care": [346, 351, 356, 970, 971, 981, 1090], "appli": [346, 351, 356, 718, 812, 911, 950, 1090], "combinatori": [346, 351, 356, 1090], "rown": [346, 351, 356], "35": [346, 351, 356, 1090], "excess": [346, 351, 356], "memori": [346, 351, 356, 430, 697, 718, 970, 971, 1011, 1018, 1040, 1042, 1043, 1089, 1090, 1092], "time": [346, 351, 356, 420, 435, 793, 911, 969, 970, 971, 1089, 1090], "metabolites_schema": [350, 1090], "block": [351, 356], "hmdb_metabolites_t": 351, "substitu": [351, 356, 1090], "proteins_t": [356, 1090], "hmdb_id": [365, 366], "2d": [365, 366, 1072], "browser": [365, 686, 1090, 1093], "pictur": 366, "svg": 366, "iterpars": [368, 1018], "releas": [370, 1088, 1090], "pointer": [370, 939, 940], "refseq": [371, 372, 616, 970, 981, 983, 992, 999], "gi": [371, 970, 981, 983, 992], "only_swissprot": [372, 990, 992, 994, 997, 998, 999, 1000, 1001, 1003, 1004, 1007, 1008], "partner_rol": 374, "unambigu": [374, 377, 1027, 1090], "use_cach": [375, 376, 377, 378], "plasma": [375, 1090, 1093], "membran": [375, 519, 1090, 1093], "receptom": 375, "intermedi": [375, 617, 970, 1090], "famili": [375, 414, 456, 457, 458, 748, 1027, 1090], "unmaintain": [377, 970, 981, 983], "probabl": [377, 945, 1090], "never": [377, 1090], "tree": [382, 1090, 1092], "def": [382, 1090], "xref": [382, 630, 631], "in_vivo": [385, 386, 387], "kinas": [386, 480, 492, 637, 812, 818, 821, 831, 1090, 1093], "min_confid": [394, 753, 754], "missens": 397, "uniprotkb": [397, 435, 665, 1090], "swiss": [397, 1090], "prot": [397, 1090], "rual": 399, "16189514": 399, "rolland": [400, 407], "25416956": 400, "unbias": [401, 407, 408, 1090], "interactom": [401, 407, 408, 1090], "iii": [401, 408, 1090], "hi": [401, 407, 408], "unpublish": 401, "condit": [401, 911, 1090], "carefulli": 401, "baderlab": 401, "lit": [404, 405], "bm": [404, 405], "2013": 404, "ccsb": [404, 405], "2017": [405, 635], "luck": 406, "2020": [406, 853, 861, 911, 1090], "ii": [407, 1090], "scale": [407, 408, 888, 889, 890, 891, 1084, 1086, 1087, 1090], "screen": [407, 408, 1090], "fname": [408, 869, 1090], "preliminari": 408, "next": [408, 793, 932, 969, 970, 971, 1090], "vidal": [408, 1090], "dfci": 408, "harvard": 408, "h_sapien": 408, "dload_trk": 408, "interaction3d": 412, "chain": [412, 427, 610, 620, 661, 778, 780, 878, 1010, 1011, 1013, 1090], "pdb": [412, 427, 428, 620, 662, 780, 782, 879, 880, 881, 1040, 1090, 1093], "stuctur": 412, "instruct": [412, 1090], "pfam": [412, 878, 1090], "subfamili": [414, 1090], "uniprotkb_ac": [419, 420], "mydomain": [419, 420], "hmm": [419, 420], "maxwait": [419, 420], "180": [419, 420], "part_siz": [419, 420], "get_ielm_hug": 419, "chunk": [420, 630], "retri": [420, 939], "failur": [420, 1088], "reduc": [420, 1090], "consol": [420, 939, 943, 1088], "suppli": [420, 497, 498, 916, 1018], "what": [420, 949, 970, 971, 1090, 1093], "detect": [420, 797], "wait": 420, "everyth": [420, 970, 981, 1090], "again": [420, 911, 943, 1027, 1076, 1077, 1078, 1079, 1080, 1081, 1089, 1090], "understood": [428, 1072], "miscor": 430, "complex_expans": 430, "only_id": 430, "smaller": [430, 1090, 1093], "footprint": 430, "takada": 432, "2007": [432, 847], "1186": 432, "gb": [432, 1089, 1090], "215": [432, 1090], "go": [434, 437, 949, 1089, 1090, 1092], "entri": [434, 435, 436, 437, 454, 568, 569, 1090], "page_s": 435, "200": 435, "review": [435, 812, 818, 821, 823, 826, 827, 830, 831, 834, 835, 875, 970, 1047, 1090], "tax_id": 435, "db_type": 437, "enzyme_isoform": [443, 1090], "substrate_isoform": [443, 1090], "ptm_type": [443, 1090], "resaa": [443, 1090], "resnum": [443, 1010, 1011, 1090], "dbget": 454, "interfac": [454, 662, 875, 876, 1005, 1089, 1090], "jp": 454, "bin": 454, "www_bget": 454, "max_entity_vari": [456, 457, 458], "medicu": [456, 457, 458, 921], "flatten": [456, 963], "Then": [456, 943, 970, 981, 1018, 1090], "often": [456, 457, 458, 971, 1089, 1090], "largest": [456, 457, 458, 1015], "hundr": [456, 457, 458, 1015, 1090], "combinatiori": [456, 457, 458], "regulatori": [458, 656, 657, 658, 801, 917, 1089, 1092], "join": [467, 1090], "asynchron": 467, "els": [467, 900, 970], "togeth": [467, 875, 1090], "com": [480, 540, 542, 801, 939, 1015, 1089, 1090], "kirouac": 482, "2010": 482, "embopress": [482, 847], "doi": [482, 683, 685, 847], "1038": [482, 847], "msb": 482, "71": 482, "signalingflow": 487, "signalingdirect": 488, "li": 490, "get_li2012": [491, 492, 493], "brand": 495, "compani": [495, 1090], "load_lmpid": [497, 498], "lmpid_data_pubmed_ref": 499, "redistribut": [499, 887, 911, 1090, 1092], "cell_typ": 507, "matrisomedb": 514, "extracellular": [514, 517, 861, 1090, 1093], "subclass": [514, 764, 996, 1090], "ecm": [517, 1090, 1093], "cdd201287": 540, "c1": [542, 1090], "accurasci": 542, "strong": [544, 1090], "experiment": [544, 1090], "cuhk": 544, "mirtarbase_2019": 544, "registered_email": [551, 552, 553], "only_collect": [551, 553], "c5": [551, 553, 1090], "m5": [551, 553], "email": [551, 552, 553], "msigdb_email": [551, 552, 553], "h": [551, 552, 553, 1064, 1090], "c2cgp": 551, "softwar": [551, 552, 553, 1090], "broadinstitut": [551, 552, 553], "gsea": [551, 552, 553], "force_download": 552, "gmt": 552, "c2": [552, 553, 1090], "cpg": 552, "geneset": [552, 553], "distinguish": [552, 1018, 1089], "come": [552, 898, 970, 983, 1089, 1090, 1093], "even": [552, 911, 944, 1027, 1090, 1092, 1093], "cgp": 553, "best": [557, 1090], "our": [557, 1088, 1089], "paper": [557, 1090, 1093], "test": [557, 911, 939, 1092], "outcom": 557, "autophagi": 559, "autophagyregul": 559, "nrf2": [560, 914, 1090], "nrf2ome": [560, 1090], "side": [566, 737, 738, 739, 969, 1090], "off": [566, 944, 956], "mine": [566, 677, 804], "fda": [566, 577, 804], "event": [566, 804], "report": [566, 804, 1090], "system": [566, 804, 939, 1089, 1090], "organism_a": [568, 569], "organism_b": [568, 569], "rel_typ": [568, 569, 993, 994, 1090], "float": [568, 569, 735, 994, 997, 1003, 1004, 1007, 1008], "pairwis": 568, "genom": [568, 970, 981, 983, 1090], "omabrows": [568, 569], "home": [568, 569, 781, 782, 911, 1090], "sometim": [568, 569, 1018, 1089, 1090, 1092, 1093], "control": [568, 569, 713, 922, 1020, 1072, 1090, 1092], "metric": [568, 569, 994, 997, 1003, 1004, 1007, 1008, 1064], "full_config": 571, "config": [571, 933], "abbrevi": [571, 1018], "ol": 572, "listof_ontologi": 572, "simpli": [572, 969, 992, 1090], "section": [572, 1015, 1090], "respons": [572, 626, 667, 668, 812, 1089, 1090], "variabl": [574, 575, 576, 577, 578, 626, 942, 943, 944, 945, 946, 947, 948, 949, 950, 951, 953, 954, 1090], "baselin": 575, "assoc_direct": 577, "assoc_indirect": 577, "expr": [577, 961], "associationbyoverallindirect": 577, "associationbyoveralldirect": 577, "significantadversedrugreact": 577, "baselineexpress": 577, "shorthand": 577, "indirect": [578, 1090], "se": [585, 586], "disease_id": 588, "pathogen_taxid": 588, "pathogen": [588, 589, 1092], "pc_label": 592, "by_interact": 600, "integ": [610, 808, 888, 889, 890, 891, 1076, 1077, 1078, 1079, 1080, 1081, 1084, 1086, 1087, 1090], "previou": [610, 812, 821, 831], "constitut": [611, 1027, 1090], "stoichiometri": [611, 712, 877, 1090], "analysi": [612, 1090, 1092], "resolut": [612, 766, 996], "num": 616, "_ref": 616, "categori": [616, 766, 858, 861, 962, 1088, 1092, 1093], "phosphoprotein": [617, 1090], "readabl": [619, 970, 980, 1090], "inner": 620, "keepfil": 621, "neither": [621, 685, 1090], "chunk_siz": [624, 625, 627, 628, 629, 630, 631], "100": [624, 625, 627, 628, 629, 630, 631, 812, 818, 821, 831, 1027, 1089, 1090], "half": [624, 625, 627, 628, 629, 630, 631, 1090], "hour": [624, 625, 627, 628, 629, 630, 631, 1090], "batch": [624, 625, 627, 628, 629, 630, 631, 875], "better": [624, 625, 627, 628, 629, 630, 631, 900, 1018, 1090, 1092, 1093], "stai": [624, 625, 627, 628, 629, 630, 631, 1090], "caus": [624, 625, 627, 628, 629, 630, 631], "timeout": [624, 625, 627, 628, 629, 630, 631, 939], "graphql": [626, 630], "thousand": [630, 1090], "phosphatas": [635, 1090], "chen": 635, "scienc": [635, 1089], "s1": [635, 1090], "ltp_onli": 637, "homo": [638, 821, 1090], "sapien": [638, 821, 1090], "htp": [647, 649, 652, 653], "biopax": [649, 652, 715, 718, 1018, 1027, 1089, 1092], "disrupt": 656, "induc": [656, 1090], "vast": [657, 939, 1090], "close": [657, 939, 1015, 1018, 1090], "enough": [657, 1090], "safe": [657, 1018], "align": [657, 1076, 1077, 1078, 1079, 1080, 1081], "regsit": 658, "export": [658, 969, 1088, 1089, 1092], "tabular": [658, 1090, 1093], "uniprot_1": 660, "chain_1": 660, "residue_1": 660, "seqnum_1": 660, "uniprot_2": 660, "chain_2": 660, "residue_2": 660, "seqnum_2": 660, "bond": [661, 881], "refactor": [661, 662, 1089], "futur": [661, 662, 877, 1090, 1093], "contact": [661, 662, 780, 781, 782, 1088, 1090], "return_unmap": 662, "unmap": 662, "normal": [662, 670, 671, 677, 861, 1005, 1015, 1089, 1090], "could": [662, 970, 983, 990, 992, 994, 997, 999, 1008, 1090], "uniprot_isoform": 665, "transcriptom": [667, 668], "pathologi": [670, 671], "sourcetyp": 675, "mix": [675, 1090, 1093], "consequencetyp": 675, "feature_field": 675, "dictread": 677, "bachman": 677, "assembl": 677, "phosphoproteom": 677, "biorxiv": 677, "1101": 677, "822668v3": 677, "only_evid": 678, "only_literatur": 678, "ftp": [681, 939, 1090], "simpler": 681, "lowercas": [681, 1049, 1090], "sid": 681, "idlist": [683, 685, 687, 688], "pmc": [683, 685], "compli": 685, "attempt": [685, 795, 922, 970, 981, 1011, 1040, 1089, 1090], "manuscript": [685, 1092], "put": [690, 768, 769, 770], "ramilowski": [690, 691], "2015": [690, 691, 1090], "long_not": 691, "subcellular": 691, "ramp_id_typ": [694, 1090], "former": [694, 858, 875, 1090, 1092], "fast": [694, 1090], "sql": [694, 695, 697, 698, 1090], "huge": [694, 868, 970, 1015, 1090, 1091], "curi": 696, "sqlite": [697, 1090], "sqlite3": [697, 1090], "temporari": [697, 1018], "acsn": [703, 919], "protein_name_typ": [704, 715], "mandatory_ref": [705, 713], "elem": 707, "cref": 712, "entity_uniprot": [712, 714], "complexvari": [712, 1027, 1029], "cplex": [712, 1090], "biopax_fil": 715, "binari": [715, 718, 939], "sbml": [716, 717, 719], "representationa": 717, "pathwaya": 717, "cachefil": [718, 793, 895], "ask": [718, 1090], "veri": [718, 1089, 1090, 1093], "stringent": 718, "free": [718, 911, 1011, 1015, 1018, 1040, 1042, 1043, 1089, 1090, 1092], "approx": [718, 1090], "2g": 718, "hierarchi": 722, "jonetjakobsson": [726, 727, 728], "fruitfli": [726, 727], "zebrafish": [726, 727], "chicken": [726, 727], "elegan": [726, 727], "xenopu": [726, 727], "tropicali": [726, 727], "yeast": [726, 727], "anoli": [726, 727], "carolinensi": [726, 727], "left": [728, 970, 1028], "atc": [732, 736], "umls_concept_on_label": [733, 735], "umls_concept_in_meddra": [733, 735], "side_effect": [733, 735], "meddra_id": [734, 737], "side_effect_nam": [734, 737], "frequenc": [735, 738, 739], "uml": [738, 739], "concept": [738, 739, 1090], "attent": 738, "sider_side_effect": 738, "20k": 738, "freq": 739, "independ": [739, 1090], "coverag": [739, 921, 1093], "exclude_secondari": 743, "signalink3": [743, 914, 1090, 1093], "raw_record": 748, "expand_famili": 748, "uniroma2": [748, 1090], "split": [748, 812, 1092], "10116": [748, 812, 818, 821, 831, 1090, 1093], "span": [754, 1090], "highest_confid": [757, 760, 761], "high_confid": [757, 760, 761], "medium_confid": [757, 760, 761], "low_confid": [757, 760, 761], "physical_interaction_scor": [757, 760], "link": 757, "subscor": [757, 760, 761], "interactor": [757, 798], "pre": [757, 760, 761, 1088], "channel": [760, 761, 1090, 1093], "form": [760, 939], "tax": [762, 875], "scientif": [762, 1052, 1088], "silico": 764, "surfac": [764, 961, 1069, 1090], "switch": 766, "elm": [766, 882, 915], "classifi": [766, 1090, 1093], "only_class": 776, "known": [776, 875, 1090, 1093], "vaqueriza": 776, "2009": [776, 1090], "3d": [778, 780, 781, 1090], "pdb_uniprot": 780, "threedcomplex_chain": 780, "automat": [780, 781, 863, 870, 874, 1005, 1089, 1090, 1092], "pdb_chain": 780, "3dcomplex": [781, 782], "shmoo": [781, 782], "weizmann": [781, 782], "il": [781, 782], "elevi": [781, 782], "3dcomplexv6": [781, 782], "cgi": [781, 782], "threedcomplex_contact": 781, "ddi_flat": [784, 785], "dmi_flat": 786, "intract": 791, "soup": 794, "trip_get_uniprot": 794, "syn": [795, 1090], "exclude_method": [796, 797], "specul": [796, 797], "trip_process": 796, "dadio": 797, "take_a_trip": 797, "provcess": 797, "bait": 797, "tab": [798, 812], "intr": 798, "trp_uniprot": 798, "tag": [798, 1018, 1090], "fill": 798, "twice": 798, "trp": 798, "trrustinteract": 801, "v2": 801, "academ": [801, 887, 911, 1090], "oup": 801, "46": [801, 1090], "d1": [801, 1090], "d380": 801, "4566018": 801, "safeti": 804, "ucqueri": [807, 1064], "listsourc": [807, 1064], "unichem_sourc": 808, "unichem_info": 809, "ncbi_id": [811, 1090], "latin": [811, 1055, 1056, 1090], "english": [811, 1049, 1052, 1090], "latin_synonym": [811, 1090], "construct": [812, 939, 969, 1072, 1076, 1077, 1078, 1079, 1080, 1081, 1084, 1086, 1087], "concaten": [812, 818, 821, 831], "sever": [812, 818, 821, 831, 1089, 1090], "query_build": [812, 821, 831, 1090], "AND": [812, 818, 821, 831, 961, 1015, 1090, 1093], "organism_id": [812, 818, 821, 831, 1090], "abov": [812, 818, 821, 831, 863, 870, 874, 895, 1089, 1090, 1093], "OR": [812, 818, 821, 831, 961, 1090], "op": [812, 818, 821, 831, 860, 1089, 1090], "underscor": [812, 818, 821, 831, 902, 911, 1090], "mass": [812, 818, 821, 831, 1090], "50000": [812, 818, 821, 831, 1090], "TO": [812, 818, 821, 831, 1090], "lit_author": [812, 818, 821, 831, 1090], "huang": [812, 818, 821, 831, 1090], "kovac": [812, 818, 821, 831, 1090], "_and": [812, 818, 821, 831, 1090], "parenthes": [812, 818, 821, 831, 961, 1090], "interv": [812, 818, 821, 831, 956], "help": [812, 818, 821, 831, 969, 970, 1088], "syntax": [812, 818, 821, 831], "_field_synonym": [812, 821, 831], "return_field": [812, 821, 831], "__iter__": 812, "skip": [812, 1067], "linebreak": 812, "fail_on_empti": 812, "name_process": 812, "appropri": [812, 1001, 1002, 1018, 1089, 1090], "especi": [812, 1090, 1092], "were": [812, 821, 831, 900, 1090], "exactli": [812, 821, 831, 1090, 1093], "urlencod": 812, "suitabl": [812, 970, 1029, 1090], "url_plain": 812, "plain": [812, 1090], "entry_vers": [813, 1090], "sequence_vers": [813, 1090], "entry_nam": [813, 1090], "replaced_bi": [813, 1090], "archiv": [814, 939, 940, 970, 1018], "delet": [814, 942, 943, 970, 1018, 1089, 1090, 1092], "insert": 818, "confirm": [820, 822], "uniprotqueri": [821, 831, 1090], "histori": [824, 1088], "oldest": [824, 1089], "fit": [836, 970, 1090], "cui": 847, "msb4100200": 847, "researchg": 848, "humansignalingnetwork": [848, 850], "publish": [848, 1090], "jan": 848, "edwin": 848, "omnipath": [848, 861, 911, 916, 918, 919, 1088, 1092, 1093], "research": [848, 1090], "gate": 848, "wang_interact": 848, "s4": 853, "07": [853, 1090], "025": 853, "wojtowicz": 853, "1111": 855, "nya": 855, "12776": 855, "25988664": 855, "scope": [858, 861, 1090, 1093], "resource_specif": [858, 861, 1090, 1093], "transmitt": [858, 861, 1090, 1093], "receiv": [858, 861, 1090, 1093], "avoid": [858, 861, 948, 953, 1076, 1077, 1078, 1079, 1080, 1081, 1089, 1090], "enabl": [858, 861, 887, 1015, 1090], "annotdefbas": 858, "customannot": [858, 860, 861, 1090], "class_definit": [858, 860], "to_set": 858, "get_subset": [858, 1090], "union": 860, "annotopbas": 860, "intersect": [860, 861, 1020, 1026, 1067], "behav": [861, 1090], "instanti": [861, 922, 1090], "intercell_annot": [861, 1090], "s10": 861, "turei": 861, "prep": 861, "composit": [861, 911, 1090, 1093], "actual": [861, 932, 1072, 1090, 1091], "annot_composite_database_nam": 861, "entit": 861, "cell_surfac": 861, "itself": [861, 953, 954, 1090], "isdisjoint": 861, "null": [861, 1090], "mappinginput": [863, 864, 865, 866, 869, 870, 871, 873, 874, 875, 969], "pro_id_type_a": [863, 870], "pro": [863, 870, 973, 1090], "overrid": [863, 870, 874, 875, 990, 992, 994, 999], "pro_id_type_b": [863, 870], "biomart_id_type_a": 864, "biomart_id_type_b": 864, "input_": 865, "col_a": 865, "col_b": 865, "paramat": [866, 871, 873], "metabolom": [866, 969, 1088, 1089], "type_": 867, "resource_id_type_a": [867, 1090], "resource_id_type_b": [867, 1090], "id_col_a": [868, 1090], "id_col_b": [868, 1090], "extra_edge_attr": [868, 1090], "extra_node_attrs_a": 868, "extra_node_attrs_b": 868, "positive_filt": 868, "negative_filt": 868, "mark_sourc": 868, "mark_target": 868, "curl_arg": 868, "must_have_refer": 868, "unique_field": 868, "expand_complex": [868, 970, 981, 982, 983], "only_default_organ": 868, "vertex": [868, 964, 967, 1072, 1076, 1077, 1078, 1079, 1080, 1081, 1090], "particular": [868, 887, 1090], "vertic": [868, 1072, 1076, 1077, 1078, 1079, 1080, 1081, 1082, 1084, 1086, 1087, 1090], "consortium": [870, 1090], "ramp": [871, 969, 1088], "id_col": 872, "extra_attr": [872, 898, 1090], "unichem": [873, 969, 1090, 1092], "uniprot_id_type_a": 874, "uniprot_id_type_b": 874, "upload": [874, 969], "webservic": [874, 1088], "would": [875, 1090, 1091], "directli": [875, 902, 969, 970, 971, 1018, 1069, 1088, 1089, 1093], "programmat": [875, 1090], "slightli": [875, 911], "capabl": 875, "static": [875, 970, 1064], "resource_id_typ": [875, 969], "short": [876, 1056, 1090, 1093], "stoichiometr": 877, "coeffici": 877, "repetit": 877, "impli": 877, "kept": [877, 970, 1090], "compat": [877, 887, 911, 1092], "add_attr": 877, "domain_id_typ": 878, "domain_a": 879, "domain_b": 879, "ref": [879, 884], "contact_residu": 879, "get_lin": 880, "resources_only_primari": 880, "intend": [880, 1090], "enzyme_genesymbol": [880, 1090], "substrate_genesymbol": [880, 1090], "residue_typ": [880, 1090], "residue_offset": [880, 1090], "css": 881, "stab_en": 881, "solv_en": 881, "area": [881, 1072], "add_residu": 881, "res_a": 881, "res_b": 881, "undefin": [881, 1090], "124": [881, 1090], "serin": 881, "hbond": 881, "sbridg": 881, "ssbond": 881, "covbond": 881, "bond_typ": 881, "get_bond": 881, "throught": 881, "numof_residu": 881, "bound": [881, 1072, 1084, 1086, 1087, 1090], "regex": 882, "motif_nam": 882, "prob": 882, "full_nam": [887, 1090], "attrib": [887, 911], "alik": [887, 911], "licensefeatur": [888, 890, 891], "check_level": [888, 889, 890, 891], "int_to_level": [888, 889, 890, 891], "nearest": [888, 889, 890, 891], "ordin": [888, 889, 890, 891], "level_to_int": [888, 889, 890, 891], "to_int": [888, 889, 890, 891], "pp": 895, "htp_threshold": 895, "20": [895, 1090], "data_attr_nam": 897, "evidence_typ": [898, 901, 903], "resource_attr": 898, "get_via": 898, "data_typ": [899, 902, 903], "mutablemap": 900, "formerli": [900, 1090], "thin": 900, "solut": [900, 1090], "clear": [900, 1090], "k": [900, 1090], "view": [900, 1089], "pop": 900, "keyerror": 900, "popitem": 900, "setdefault": 900, "lack": [900, 915], "networkresourcekeybas": 902, "came": 902, "brows": [908, 1088], "logfil": [908, 1090], "resource_info_path": 911, "posixpath": 911, "runner": 911, "use_package_path": 911, "aim": [911, 1089, 1090], "01": [911, 1090], "develop": [911, 1089], "info": [911, 1064, 1088, 1093], "02": [911, 1090], "inherit": [911, 1090], "add_resource_attr": 911, "place": [911, 1090], "pathway_noref": [911, 1090], "pathway_al": [911, 1090], "tfregulon": [911, 921], "reaction_pc": 911, "enzyme_substr": [911, 1090], "small_molecule_protein": [911, 1090], "tf_mirna": [911, 1090], "pathwaycommon": [911, 1090, 1092], "pathwaycommons_transcript": 911, "interaction_htp": 911, "interaction_misc": [911, 1090], "lncrna_target": 911, "transcription_onebyon": [911, 1090], "transcription_dorothea": 911, "ptm_noref": [911, 1090], "ptm_all": [911, 1090], "reaction_misc": [911, 1090], "post_transcript": 911, "process_descript": 911, "drug_target": 911, "license_purpos": [911, 1090], "commerci": 911, "profit": [911, 1090], "license_shar": 911, "noderiv": 911, "noshar": 911, "license_attrib": 911, "noattrib": 911, "incld": 911, "safest": 911, "sequenti": 911, "legal": [911, 1090], "desir": [911, 956, 992, 1076, 1077, 1078, 1079, 1080, 1081], "alter": [911, 1090], "mention": [911, 1090], "who": 911, "__resource__": 911, "whole": [911, 1090], "incid": 911, "collect_network": [911, 1090], "license_filt": 911, "secondary_resourc": 911, "postfix": [911, 1090], "tfacts_collectri": 911, "forc": [911, 956, 1090], "remove_old": 911, "potenti": [911, 970, 1090], "adhesom": [914, 1090], "arn": [914, 1090], "baccin2019": [914, 1090], "ca1": [914, 1090], "cellchatdb": [914, 1090], "cellink": [914, 1090], "cellphonedb": [914, 1088], "celltalkdb": [914, 1090], "connectomedb": [914, 1090], "death": [914, 1090], "guide2pharma": [914, 1090], "hpmr": [914, 1090], "icellnet": [914, 1090], "lrdb": [914, 1090], "macrophag": [914, 1090], "pdz": [914, 1090], "ramilowski2015": [914, 1090], "scconnect": [914, 1090], "signor": [914, 921, 942, 943, 944, 945, 946, 947, 948, 949, 950, 951, 953, 954, 1090, 1093], "spike": [914, 1090, 1093], "talklr": [914, 1090], "trip": [914, 1090], "flow": [914, 1093], "dbptm": [915, 1090], "depod": [915, 1090], "domino": 915, "hprd_p": 915, "iptmnet": [915, 1090], "kea": [915, 1090], "lmpid": 915, "phelm": 915, "psite": 915, "alz": 916, "ccmap": [916, 917], "dip": [916, 917], "innatedb": [916, 917], "lit17": 916, "matrixdb": [916, 917, 1090], "mppi": [916, 917], "netpath": [916, 1090], "laudanna_direct": 918, "laudanna_effect": 918, "subset": 918, "oreganno_old": 920, "ab": 921, "encode_dist": 921, "encode_prox": 921, "htri": 921, "oreganno": 921, "pazar": 921, "trrust": 921, "demand": [922, 990, 992, 994, 997, 999, 1008, 1090], "license_dir": 924, "dataset_a": 926, "dataset_b": 926, "No": [928, 1090], "typic": [932, 970, 981, 983, 1089, 1090], "quicker": 932, "cache_item": 933, "md5": [933, 969], "hash": [933, 969, 1090], "cachedir": 935, "ensur": [935, 1089, 1090], "req_head": [939, 1090], "debug": [939, 948, 949, 954], "outf": [939, 1067], "compr": [939, 940], "files_need": [939, 940], "connect_timeout": 939, "ignore_content_length": 939, "init_fun": 939, "get_jsessionid": 939, "init_use_cach": 939, "default_mod": [939, 940], "override_post": 939, "init_head": 939, "return_head": 939, "compress": [939, 940, 1018], "write_cach": [939, 969], "force_quot": 939, "sftp_user": 939, "sftp_passwd": 939, "sftp_passwd_fil": 939, "sftp_port": 939, "22": [939, 941, 1090, 1093], "sftp_host": 939, "sftp_ask": 939, "setup": [939, 951, 1090], "cache_dir": 939, "bypass_url_encod": 939, "empty_attempt_again": 939, "keep_fail": 939, "alpn": 939, "http2": 939, "fileopen": [939, 1018], "pycurl": [939, 1090], "amount": [939, 1090], "cooki": 939, "param": [939, 969, 1015, 1072, 1076, 1077, 1078, 1079, 1080, 1081, 1084, 1086, 1087], "multipart": 939, "quot": 939, "redirect": 939, "gzip": [939, 940], "tar": [939, 940, 1018], "gz": [939, 940, 1018], "zip": [939, 940, 1018], "cache_path": 939, "construct_binary_data": 939, "byte": [939, 1015], "is_quot": 939, "stackoverflow": 939, "question": [939, 1089], "1637762": 939, "open_tgz": [939, 940], "replace_forbidden": 939, "repl": 939, "_": 939, "charact": [939, 970, 981, 983, 1090], "forbidden": 939, "slash": 939, "unix": 939, "window": 939, "environ": [939, 1090], "set_binary_data": 939, "transmit": 939, "url_fix": 939, "charset": 939, "utf": [939, 940], "121017": 939, "854988": 939, "file_param": 940, "_open": 940, "set_fileobj": 940, "bz2": 940, "multifil": 940, "examin": 940, "host": [941, 1090, 1092], "port": 941, "rownam": 941, "_global_context_off": [942, 944, 946, 948, 950, 953], "context": [942, 943, 944, 945, 946, 947, 948, 949, 950, 951, 953, 954, 1072, 1076, 1077, 1078, 1079, 1080, 1081, 1084, 1087, 1090], "behaviour": [942, 945, 946, 950, 970, 981, 983, 1090], "behind": [942, 943, 944, 945, 946, 947, 948, 949, 950, 951, 953, 954, 1090], "scene": [942, 943, 944, 945, 946, 947, 948, 949, 950, 951, 953, 954, 1090], "cachedel": [942, 943], "data_format": [942, 943, 944, 945, 946, 947, 948, 949, 950, 951, 953, 954, 1090, 1092], "_global_context_on": [943, 945, 947, 949, 951, 954], "dryrun": [943, 950, 951], "upon": [943, 969, 1090], "know": [943, 1090], "cache_on": 944, "cacheprint": [946, 947], "restor": [948, 950, 953], "cache_debug_off": 948, "issu": [949, 954, 1089], "cache_debug_on": 949, "cache_dryrun_off": 950, "cache_dryrun_on": 951, "lastcurl": [953, 954, 1090], "preserv": [953, 954, 1090], "cache_preserve_off": 953, "cache_preserve_on": 954, "done": [956, 1089], "init": 956, "unit": 956, "had": 956, "my": [956, 1089], "progressbar": 956, "great": [956, 1090], "tqdm": 956, "move": [956, 1092], "oldprogress": 956, "get_desc": 956, "suppos": 956, "someth": [956, 1089, 1090], "constant": [956, 1076, 1077, 1078, 1079, 1080, 1081], "life": 956, "stage": [956, 1090], "init_tqdm": 956, "set_don": 956, "set_statu": 956, "set_tot": 956, "msg": [956, 1090], "busi": 956, "termin": [956, 1090], "finish": [956, 1090], "destroi": 956, "use_pickle_cach": [961, 965, 966], "geneontologi": [961, 1090], "expr_names_to_term": 961, "logic": 961, "get_annot": [961, 962], "get_annot_ancestor": 961, "lowest": [961, 963], "get_annots_ancestor": 961, "get_nam": [961, 963, 1090], "get_term": [961, 963], "has_any_term": 961, "has_term": 961, "i_select_by_term": 961, "return_uniprot": 961, "select_by_expr": 961, "select_by_al": 961, "preced": 961, "0005576": [961, 1090], "0070062": 961, "0005887": 961, "hormon": [961, 1090], "0009897": 961, "select_by_expr_term": 961, "select_by_nam": 961, "select_by_term": 961, "go_annot": 962, "goannot": [962, 1090], "process_categori": 962, "all_from_aspect": 963, "aspect_from_nam": 963, "get_all_ancestor": 963, "include_se": 963, "get_all_descend": [963, 1090], "get_aspect": 963, "is_leaf": 963, "leaf": 963, "is_nam": 963, "is_root": 963, "root": [963, 1090, 1092], "is_term": 963, "names_to_term": 963, "names_to_terms_aspect": 963, "namess": 963, "set_of": 963, "terms_nam": 963, "to_term": 963, "set_of_nam": 963, "set_of_term": 963, "subgraph_nod": 963, "subgraph": 963, "terms_to_nam": 963, "terms_to_names_aspect": 963, "load_a_to_b": 969, "load_b_to_a": 969, "lifetim": [969, 970, 971, 997, 1032], "300": [969, 970, 971, 997, 1032, 1090], "mappingt": [969, 970, 985, 986, 1090], "coupl": [969, 1015], "much": [969, 1089, 1090, 1092, 1093], "faster": [969, 1089, 1090], "mandatori": [969, 1090, 1092, 1093], "identif": [969, 997, 1007], "entrez_protein": 969, "entrez_mirna": 969, "preiod": [969, 970, 971], "cleanup": [969, 970, 971], "id_type_sid": 969, "success": [969, 970], "mapping_table_a_to_b": 969, "mapping_table_b_to_a": 969, "read_cach": 969, "previous": [969, 1015], "read_mapping_arrai": 969, "read_mapping_biomart": 969, "read_mapping_fil": 969, "read_mapping_hmdb": 969, "read_mapping_ramp": 969, "read_mapping_unichem": 969, "read_mapping_uniprot": 969, "programmatic_access": 969, "read_mapping_uniprot_list": 969, "set_uniprot_spac": 969, "space": [969, 1090], "setup_cach": 969, "tables_load": 969, "cleanup_period": [970, 997, 1018, 1032], "translate_deleted_uniprot": 970, "keep_invalid_uniprot": 970, "trembl_swissprot_by_genesymbol": 970, "period": [970, 1090], "unus": 970, "forev": 970, "obsolet": 970, "chain_map": [970, 1090], "by_id_typ": [970, 1090], "via_id_typ": 970, "map_nam": [970, 982, 1089, 1090], "create_revers": 970, "get_table_kei": 970, "unambig": [970, 971, 982], "guess_typ": 970, "tri": [970, 975, 1076, 1077, 1078, 1079, 1080, 1081], "has_mapping_t": 970, "expiri": [970, 971], "timer": 970, "load_genesymbol5": 970, "load_map": [970, 1011], "mapread": [970, 1090], "load_uniprot_stat": 970, "thing": 970, "try": [970, 981, 983, 1089, 1090], "fail": 970, "uniprot_cleanup": [970, 981, 982, 983, 1090], "ideal": [970, 981], "think": [970, 981, 1090], "how": [970, 981, 1088, 1089], "predefin": [970, 981, 1089, 1090], "couldn": [970, 981], "refseqp": [970, 981, 983, 1090], "np_": [970, 981, 983], "xp_": [970, 981, 983], "ensp": [970, 981, 983], "enst": [970, 981, 983], "ensg": [970, 981, 983], "dna": [970, 981, 983], "hgnc": [970, 981, 983, 1090], "embl": [970, 981, 983, 1089, 1090], "ddbj": [970, 981, 983], "genebank": [970, 981, 983], "cd": [970, 981, 983], "embl_id": [970, 981, 983], "And": [970, 981, 983, 1090, 1093], "encount": [970, 981, 983, 1089], "map_name0": [970, 1090], "recommend": [970, 982, 997, 1003, 1004, 1007, 1008, 1090], "mostli": [970, 982], "loss": [970, 982], "seamlessli": [970, 983], "mapping_t": [970, 1090], "loader": [970, 1043], "only_uniprot_ac": 970, "accession_numb": 970, "other_organism_uniprot": 970, "primary_uniprot": 970, "remove_expir": 970, "ago": 970, "remove_kei": 970, "remove_t": 970, "reverse_kei": 970, "reverse_map": 970, "whenev": 970, "translate_deleted_uniprot_by_genesymbol": 970, "translation_df": [970, 1090], "translation_dict": [970, 1090], "trembl_swissprot": 970, "callback": 970, "correct": 970, "counterpart": [970, 1093], "valid_uniprot": [970, 1090], "which_tabl": 970, "unload": [971, 1005, 1042, 1043, 1090], "usag": [971, 996, 1018, 1064], "get_kei": 971, "pri": 973, "sec": 973, "mirbas": [973, 1090], "manag": [974, 1005, 1006, 1088], "label_id_typ": [976, 977], "idtyp": [978, 1090], "mappingtabledefinit": [984, 1090], "hc": [989, 990], "ensemblorthologbas": 989, "one2on": [990, 997, 1003, 1004, 1007, 1008, 1090], "one2mani": [990, 997, 1003, 1004, 1007, 1008], "many2mani": [990, 997, 1003, 1004, 1007, 1008], "proteinorthologi": [990, 992, 994], "ensembl_hc": [990, 997, 1003, 1004, 1007, 1008, 1090], "ensembl_typ": [990, 997, 1003, 1004, 1007, 1008, 1090], "full_record": [990, 992, 994, 997, 999, 1003, 1004, 1007, 1090], "orthologbas": [990, 992, 994, 997, 999, 1004], "against": [990, 994, 1090, 1093], "translate_df": [990, 992, 994, 997, 999], "ortho_df": [990, 992, 994, 999], "layout": [990, 992, 994, 997, 999, 1008, 1068, 1072, 1084, 1086, 1087], "homologeneorthologbas": 991, "homologen": [992, 997, 999, 1003, 1004, 1007, 1008, 1089, 1090, 1092, 1093], "homologu": [992, 999], "omaorthologbas": 993, "supercl": 996, "abcmeta": 996, "mro": 996, "virtual": 996, "abc": 996, "decor": 996, "get_df": [997, 1090], "oma": [997, 1003, 1004, 1007, 1008, 1090], "oma_rel_typ": [997, 1003, 1004, 1007, 1008], "oma_scor": [997, 1003, 1004, 1007, 1008], "get_dict": [997, 1090], "bewar": [997, 1008], "preload_prot": 1000, "orthology_arg": 1001, "preload_seq": [1002, 1090], "namespac": 1006, "get_residu": 1011, "pdb_start": 1012, "pdb_end": 1012, "uniprot_start": 1012, "uniprot_end": 1012, "usernam": 1015, "output_format": 1015, "extens": 1015, "feel": [1015, 1089, 1090], "wilhelm": 1015, "v509": 1015, "n7502": 1015, "nature13319": 1015, "descritpion": 1015, "visit": 1015, "dai": [1015, 1090], "admin": [1015, 1090], "get_express": 1015, "tissue_averag": 1015, "unnorm": 1015, "disk": [1015, 1090], "averag": [1015, 1090], "sampl": 1015, "get_piec": 1015, "20480": 1015, "delimit": 1015, "mb": [1015, 1089, 1090], "segment": [1015, 1090], "curli": 1015, "brace": 1015, "tissue_id": 1015, "calculation_method": 1015, "swissprot_onli": 1015, "no_isoform": 1015, "get_tissu": 1015, "pandas_matrix": 1015, "Not": [1015, 1090], "shold": 1015, "tissues_x_protein": 1015, "800": 1018, "file_from_arch": 1018, "easili": [1018, 1090, 1093], "lxml": [1018, 1090], "etre": [1018, 1090], "minim": [1018, 1090], "me": 1018, "thod": 1018, "arbit": 1018, "rari": 1018, "parser": 1018, "id42": 1018, "akt1": [1018, 1090], "ffjh2": 1018, "tr9gy": 1018, "bp": 1018, "everi": [1018, 1090, 1092], "nucleic": [1018, 1090], "But": [1018, 1089, 1090], "minor": 1018, "mo": 1018, "dific": 1018, "ternal": 1018, "dure": 1018, "risk": 1018, "homo_sapien": 1018, "owl": 1018, "biopax_s": 1018, "uncompress": 1018, "cleanup_hook": 1018, "close_biopax": 1018, "init_etre": 1018, "open_biopax": 1018, "execut": [1018, 1090], "workflow": [1018, 1092], "set_progress": 1018, "entityset": [1019, 1020, 1022, 1025, 1026, 1030], "itermemb": 1020, "conveni": [1020, 1090], "reactionsid": 1020, "er": 1021, "ed": 1021, "protein_id": 1025, "default_id_typ": 1027, "max_complex_combin": 1027, "max_reaction_combin": 1027, "gen_cvari": 1027, "in_same_compon": 1027, "merge_complex": 1027, "this_round": 1027, "biopaxread": [1027, 1092], "subcomplex": 1027, "rcomplex": 1027, "merge_cvari": 1027, "fact": [1027, 1090], "variat": 1027, "right": 1028, "left_attr": 1028, "right_attr": 1028, "proteinfamili": 1029, "ref_id": 1030, "is_not": 1032, "iterdb": [1042, 1043], "iterprotein": [1042, 1043], "processor": [1042, 1043, 1089], "region": [1044, 1090], "canon": 1044, "findal": [1044, 1090], "fragment": [1044, 1090], "fasta": 1046, "taxon_id": [1049, 1050, 1051, 1052], "capit": 1049, "languag": [1052, 1089, 1090], "codenam": 1052, "long_nam": 1055, "shorten": [1055, 1056], "dot": 1056, "genu": [1056, 1090], "mark": 1056, "taxon_nam": [1057, 1058, 1059, 1060, 1061], "connectivity_search": 1064, "id_list": 1064, "cheminformat": 1064, "widesearchinfo": 1064, "inchikey2anyth": 1064, "lst": [1064, 1090], "smiles2chembl": 1064, "xsize": 1067, "cairotest": 1067, "width": 1067, "1024": 1067, "height": 1067, "bgcol": 1067, "embl_gray125": 1067, "interscol": 1067, "ysize": 1067, "ycol": 1067, "margin": [1067, 1068, 1090], "24": [1067, 1090], "mincircl": 1067, "cellpad": 1067, "graphix_dir": 1068, "graphix_format": 1068, "title_text": 1068, "title_font_famili": 1068, "title_font_s": 1068, "title_color": 1068, "646567": 1068, "fruchterman_reingold": 1068, "layout_param": 1068, "vertex_label": 1068, "vertex_s": [1068, 1090], "vertex_label_s": [1068, 1090], "degree_label_s": 1068, "edge_width": [1068, 1090], "vertex_color": [1068, 1090], "6ea945": 1068, "vertex_label_color": [1068, 1090], "007b7f": 1068, "vertex_alpha": 1068, "aa": [1068, 1090], "vertex_frame_color": 1068, "ffffff00": 1068, "vertex_frame_width": [1068, 1090], "edge_label": 1068, "edge_label_s": 1068, "edge_label_color": 1068, "edge_curv": 1068, "edge_color": [1068, 1090], "818284": 1068, "edge_alpha": 1068, "autocurv": 1068, "vertex_label_font": 1068, "san": 1068, "serif": 1068, "edge_label_font": 1068, "edge_arrow_s": 1068, "edge_arrow_width": 1068, "palett": [1068, 1072, 1076, 1077, 1078, 1079, 1080, 1081, 1084, 1086, 1087], "bbox": [1068, 1072, 1084, 1087], "dimens": 1068, "1280": 1068, "draw": [1069, 1072, 1076, 1077, 1078, 1079, 1080, 1081, 1082, 1084, 1086, 1087], "routin": [1069, 1082], "cairo": [1069, 1072, 1076, 1077, 1078, 1079, 1080, 1081, 1084, 1087, 1090], "l": [1069, 1072, 1076, 1077, 1078, 1079, 1080, 1081, 1084, 1086, 1087, 1090], "defaultgraphdraw": [1069, 1084, 1086, 1087], "ubigraph": 1069, "displai": [1069, 1090], "ubigraphdraw": 1069, "u": [1069, 1089, 1090], "ubietylab": 1069, "net": [1069, 1090], "cytoscap": [1069, 1089, 1090], "cytoscaperpc": 1069, "plugin": 1069, "gforg": 1069, "nbic": 1069, "nl": 1069, "project": 1069, "cytoscapegraphdraw": 1069, "abstractcairographdraw": [1071, 1072, 1073, 1074], "vertex_drawer_factori": 1072, "edge_drawer_factori": 1072, "label_drawer_factori": 1072, "visualis": 1072, "plane": 1072, "curv": 1072, "invok": 1072, "plot": [1072, 1075, 1088, 1092], "__plot__": 1072, "drawer": [1072, 1075, 1076, 1077, 1078, 1079, 1080, 1081, 1082, 1084, 1086, 1087], "boundingbox": [1072, 1084, 1087], "box": [1072, 1084, 1086, 1087], "factori": 1072, "abstractcairovertexdraw": [1072, 1087], "color": [1072, 1076, 1077, 1078, 1079, 1080, 1081, 1084, 1086, 1087], "defaultvertexdraw": 1072, "abstractedgedraw": [1072, 1077, 1078, 1081], "style": [1072, 1075, 1092, 1093], "drawn": [1072, 1076, 1077, 1078, 1079, 1080, 1081, 1084, 1086, 1087], "arrowedgedraw": 1072, "textdraw": 1072, "abstract": [1076, 1084, 1086], "concret": [1076, 1086], "draw_directed_edg": [1076, 1077, 1078, 1079, 1080, 1081], "src_vertex": [1076, 1077, 1078, 1079, 1080, 1081], "dest_vertex": [1076, 1077, 1078, 1079, 1080, 1081], "draw_loop_edg": [1076, 1077, 1078, 1079, 1080, 1081], "circl": [1076, 1077, 1078, 1079, 1080, 1081], "draw_undirected_edg": [1076, 1077, 1078, 1079, 1080, 1081], "get_label_posit": [1076, 1077, 1078, 1079, 1080, 1081], "midpoint": [1076, 1077, 1078, 1079, 1080, 1081], "y": [1076, 1077, 1078, 1079, 1080, 1081, 1084, 1086, 1087, 1090], "horizont": [1076, 1077, 1078, 1079, 1080, 1081], "taken": [1076, 1077, 1078, 1079, 1080, 1081], "textalign": [1076, 1077, 1078, 1079, 1080, 1081], "alpha_at_src": 1077, "alpha_at_dest": 1077, "vari": 1077, "alpha": [1077, 1079, 1080, 1090], "destin": [1077, 1079, 1080, 1081], "arrow": 1078, "alphavaryingedgedraw": [1079, 1080], "opac": [1079, 1080], "transpar": [1079, 1080], "interpol": [1079, 1080], "taper": 1081, "wider": 1081, "narrow": 1081, "abstractvertexdraw": 1084, "abstractcairodraw": 1084, "canva": 1084, "visual_vertex": [1084, 1086, 1087], "coord": [1084, 1086, 1087], "Its": [1084, 1086, 1087, 1090], "visualvertexbuild": [1084, 1086, 1087], "coordin": [1084, 1086, 1087, 1089, 1090], "algorithm": [1084, 1086, 1087], "abstractdraw": 1086, "welcom": [1088, 1090], "pypath": [1088, 1092, 1093], "instal": 1088, "faq": 1088, "impressum": 1088, "inter": [1088, 1089], "explor": [1088, 1090], "32": [1088, 1090], "31": [1088, 1090], "74": [1088, 1090], "93": 1088, "110": [1088, 1090], "upcom": 1088, "navig": 1088, "introduct": 1088, "app": [1088, 1089], "hmdb": 1088, "sanit": 1088, "quantit": 1088, "overview": 1088, "intercel": [1088, 1089, 1092, 1093], "log": [1088, 1089, 1092], "disabl": 1088, "bel": [1088, 1089, 1092], "quickli": 1088, "plai": 1088, "omnipathr": [1089, 1090], "popular": 1089, "versatil": [1089, 1090, 1092], "yourself": 1089, "builder": 1089, "peopl": [1089, 1090], "satisfi": 1089, "realli": [1089, 1090], "fresh": [1089, 1090], "pypi": [1089, 1090], "pip": 1089, "git": 1089, "experienc": 1089, "well": [1089, 1090], "platform": 1089, "biolog": [1089, 1090], "overal": [1089, 1090], "downlad": 1089, "alon": 1089, "begin": 1089, "fundament": [1089, 1090], "design": [1089, 1090], "principl": 1089, "todai": 1089, "enz_sub": [1089, 1090, 1093], "get_db": [1089, 1090], "easi": [1089, 1090], "prone": 1089, "truncat": [1089, 1090], "interrupt": 1089, "problemat": 1089, "possibli": [1089, 1090], "offlin": 1089, "fix": [1089, 1090, 1092], "standalon": [1089, 1090], "script": [1089, 1090], "varieti": [1089, 1090, 1093], "q01279": [1089, 1090], "run": [1089, 1090, 1093], "pyproject": 1089, "toml": 1089, "besid": [1089, 1090], "privat": 1089, "sensit": 1089, "omnipathdb": [1089, 1090, 1093], "gmail": 1089, "d\u00e9ne": 1089, "t\u00fcrei": 1089, "saez": 1089, "contribut": 1089, "scientist": 1089, "erva": 1089, "ulusoi": 1089, "melih": 1089, "darcan": 1089, "\u00f6mer": 1089, "kaan": 1089, "vural": 1089, "tennur": 1089, "k\u0131l\u0131\u00e7": 1089, "elif": 1089, "\u00e7evrim": 1089, "b\u00fcnyamin": 1089, "\u015fen": 1089, "atabei": 1089, "\u00fcnl\u00fc": 1089, "mert": 1089, "erg\u00fcn": 1089, "hu": [1089, 1090], "pi": [1089, 1090], "tunca": 1089, "do\u011fan": 1089, "leila": 1089, "gul": 1089, "dezs\u0151": 1089, "m\u00f3do": 1089, "m\u00e1rton": 1089, "\u00f6lbei": 1089, "tam\u00e1": 1089, "korcsm\u00e1ro": 1089, "korcsmaro": 1089, "michael": 1089, "klein": 1089, "fabian": 1089, "charl": 1089, "taplei": 1089, "hoyt": 1089, "daniel": 1089, "domingo": 1089, "fern\u00e1ndez": 1089, "olga": 1089, "ivanova": 1089, "introduc": 1089, "sophia": 1089, "m\u00fcller": 1089, "dott": 1089, "nicol\u00e0": 1089, "palacio": 1089, "sebastian": 1089, "lobentanz": 1089, "ahmet": 1089, "rifaioglu": 1089, "mainten": [1089, 1090], "aurelien": 1089, "dugourd": 1089, "christina": 1089, "schmidt": 1089, "maintain": [1089, 1090], "francesco": 1089, "ceccarelli": 1089, "attila": 1089, "g\u00e1bor": 1089, "alberto": 1089, "valdeoliva": 1089, "logo": 1089, "jakob": 1089, "wirbel": 1089, "graphic": 1089, "spencer": 1089, "phillip": 1089, "bird": 1089, "ey": 1089, "16": 1090, "17": 1090, "18": 1090, "21": 1090, "bioconductor": 1090, "furthermor": 1090, "enjoi": 1090, "almost": [1090, 1092], "unlimit": 1090, "tour": 1090, "chanc": 1090, "hesit": 1090, "__version__": 1090, "0m": 1090, "49": 1090, "47": 1090, "2023": 1090, "03": 1090, "09": 1090, "39": 1090, "36": 1090, "easiest": 1090, "quick": 1090, "34": 1090, "27": 1090, "2022": 1090, "lt": 1090, "databasemanag": 1090, "0x602fb851cd90": 1090, "gt": 1090, "tf_target": [1090, 1093], "mirna_mrna": 1090, "lncrna_mrna": 1090, "offer": [1090, 1092], "cu": 1090, "83": 1090, "7980": 1090, "35551": 1090, "1m": 1090, "55": 1090, "18558": 1090, "94358": 1090, "tft": 1090, "2m": 1090, "72": 1090, "54": 1090, "18986": 1090, "326708": 1090, "mi": 1090, "1264": 1090, "3288": 1090, "tmi": 1090, "41": 1090, "1032": 1090, "4960": 1090, "lnc": 1090, "33": 1090, "243": 1090, "217": 1090, "alloster": 1090, "smol": 1090, "94": 1090, "57": 1090, "1980": 1090, "3147": 1090, "41426": 1090, "co": 1090, "28173": 1090, "quit": 1090, "43": 1090, "60": 1090, "5490653": 1090, "50872": 1090, "68": 1090, "heavi": 1090, "ic": 1090, "37": 1090, "301527": 1090, "48570": 1090, "biomed": 1090, "troublesom": 1090, "broken": 1090, "daili": 1090, "cytosig": 1090, "signor_interact": 1090, "_interact": 1090, "_enz_sub": 1090, "_complex": 1090, "_annot": 1090, "fulli": 1090, "_raw": 1090, "_map": 1090, "bring": 1090, "observ": 1090, "repeat": 1090, "pattern": 1090, "arbitrarili": 1090, "toward": 1090, "straightforward": 1090, "outsid": 1090, "signor_complex": 1090, "complexaggreg": 1090, "p23511_p25208_q13952": 1090, "nfy": 1090, "p68104_p85299_q6r327_q8tb45_q9bvc4": 1090, "mtorc2": 1090, "p42345_q8n122_q8tb45_q96b36_q9bvc4": 1090, "mtorc1": 1090, "p63208_q13616_q9y297": 1090, "scf": 1090, "betatrcp": 1090, "q09472_q92793": 1090, "cbp": 1090, "p300": 1090, "q09472_q92793_q92831": 1090, "pcaf": 1090, "q13485_q15796": 1090, "smad2": [1090, 1093], "smad4": 1090, "p84022_q13485": 1090, "smad3": 1090, "p05412_q13485": 1090, "jun": 1090, "q15796_q9hau4": 1090, "smurf2": 1090, "o15105_q01094_q13547": 1090, "smad7": 1090, "hdac1": 1090, "e2f": 1090, "p19838_q04206": 1090, "nfkb": 1090, "p65": 1090, "p50": 1090, "o14920_o15111": 1090, "ik": 1090, "1000": 1090, "17699": 1090, "52": 1090, "signorinteract": 1090, "o15530": 1090, "source_isoform": 1090, "target_isoform": 1090, "source_typ": 1090, "target_typ": 1090, "10455013": 1090, "ptm_residu": 1090, "ser396": 1090, "ptm_motif": 1090, "sssssshslsasdtg": 1090, "q9nq66": 1090, "18035": 1090, "smallmolecul": 1090, "quantiti": 1090, "23880553": 1090, "catalysi": 1090, "p62136": 1090, "o15169": 1090, "down": 1090, "dephosphoryl": 1090, "17318175": 1090, "ser77": 1090, "yepegsasptppylk": 1090, "sou": 1090, "3285": 1090, "signor_enzyme_substr": 1090, "easier": 1090, "58": 1090, "396": 1090, "389": 1090, "403": 1090, "77": 1090, "70": 1090, "84": 1090, "final": 1090, "signor_pathway_annot": 1090, "practic": 1090, "o14733": 1090, "48": 1090, "signorpathwai": 1090, "tnf": 1090, "toll": 1090, "haven": 1090, "four": 1090, "signor_protein_famili": 1090, "pf2": 1090, "53": 1090, "q9hbw0": 1090, "q92633": 1090, "showcas": 1090, "metabol": 1090, "enzymat": 1090, "closer": 1090, "ramp_list_t": 1090, "51": 1090, "analyt": 1090, "rampid": 1090, "analytehasontologi": 1090, "rampcompoundid": 1090, "rampontologyid": 1090, "analytehaspathwai": 1090, "pathwayrampid": 1090, "pathwaysourc": 1090, "analytesynonym": 1090, "geneorcompound": 1090, "catalyz": 1090, "rampgeneid": 1090, "chem_prop": 1090, "ramp_id": 1090, "chem_data_sourc": 1090, "chem_source_id": 1090, "iso_smil": 1090, "inchi_key_prefix": 1090, "inchi_kei": 1090, "mw": 1090, "monoisotop_mass": 1090, "common_nam": 1090, "mol_formula": 1090, "db_version": 1090, "ramp_vers": 1090, "load_timestamp": 1090, "version_not": 1090, "met_intersects_json": 1090, "gene_intersects_json": 1090, "met_intersects_json_pw_map": 1090, "gene_intersects_json_pw_map": 1090, "db_sql_url": 1090, "entity_status_info": 1090, "status_categori": 1090, "entity_source_id": 1090, "entity_source_nam": 1090, "entity_count": 1090, "metabolite_class": 1090, "class_source_id": 1090, "class_level_nam": 1090, "class_nam": 1090, "commonnam": 1090, "hmdbontologytyp": 1090, "metcount": 1090, "pathwayr": 1090, "1368": 1090, "ramp_raw": 1090, "At": 1090, "bottleneck": 1090, "thank": 1090, "happen": 1090, "25": [1090, 1093], "sourceid": 1090, "priorityhmdbstatu": 1090, "datasourc": 1090, "pathwaycount": 1090, "hmdb0000001": 1090, "ramp_c_000000001": 1090, "methylhistidin": 1090, "quantifi": 1090, "hmdb0000479": 1090, "50599": 1090, "chemspid": 1090, "83153": 1090, "c01152": 1090, "hmdb_kegg": 1090, "756552": 1090, "h0ydb7": 1090, "ramp_g_000009307": 1090, "rab38": 1090, "wiki": 1090, "756553": 1090, "a0a024r191": 1090, "756554": 1090, "h0yea4": 1090, "756555": 1090, "23682": 1090, "756556": 1090, "gene_symbol": 1090, "756557": 1090, "physicochem": 1090, "00": 1090, "oc": 1090, "o": 1090, "brmwtnujhumwm": 1090, "lurjtmiesa": 1090, "c7h11n3o2": 1090, "169": 1090, "181": 1090, "085": 1090, "cc1": 1090, "cn1c": 1090, "jdhildinmrgul": 1090, "27596": 1090, "cn1cncc1c": 1090, "methyl": 1090, "histidin": 1090, "cn1cnc": 1090, "tele": 1090, "ramp_c_000000002": 1090, "hmdb0000002": 1090, "ncccn": 1090, "xfnjvjplkcpibv": 1090, "uhfffaoysa": 1090, "c3h10n2": 1090, "c4": 1090, "h1": 1090, "5h2": 1090, "1249": 1090, "0844": 1090, "diaminopropan": 1090, "275898": 1090, "ramp_c_000258279": 1090, "lipidmap": 1090, "lmpk15050003": 1090, "ccccccccccccc": 1090, "uxlmjhnfdrmgpw": 1090, "ljqanchmsa": 1090, "c24h38o6": 1090, "422": 1090, "267": 1090, "hydroxi": 1090, "methoxi": 1090, "2r": 1090, "acetoxi": 1090, "pentadecyl": 1090, "275899": 1090, "ramp_c_000258280": 1090, "lmpk15050004": 1090, "cc": 1090, "cvznklnahbtint": 1090, "jochjyfzsa": 1090, "c24h38o5": 1090, "406": 1090, "272": 1090, "benzoq": 1090, "275900": 1090, "ramp_c_000226089": 1090, "lmpk15050005": 1090, "ccccccccccc": 1090, "jiugzsypfredlg": 1090, "hxuwfjfhsa": 1090, "c22h34o5": 1090, "378": 1090, "241": 1090, "tridecyl": 1090, "benzoqui": 1090, "275901": 1090, "ramp_c_000258283": 1090, "lmpk15050008": 1090, "ccccccccccccccc": 1090, "gxdurrguxldzkn": 1090, "c21h34o4": 1090, "350": 1090, "246": 1090, "suberonon": 1090, "275902": 1090, "ramp_c_000258284": 1090, "lmpk15050009": 1090, "amknobhckrzhio": 1090, "c19h30o4": 1090, "322": 1090, "214": 1090, "rapanon": 1090, "275903": 1090, "advantag": 1090, "vice": 1090, "versa": 1090, "con": 1090, "56": 1090, "0x6fa1e9e4e940": 1090, "big": 1090, "format_byt": 1090, "python_memory_usag": 1090, "44": 1090, "list_column": 1090, "subqueri": 1090, "distinct": 1090, "ON": 1090, "read_sql_queri": 1090, "hmdb00001": 1090, "104129": 1090, "hmdb0126033": 1090, "25882": 1090, "104130": 1090, "hmdb0141947": 1090, "180150": 1090, "104131": 1090, "hmdb0128505": 1090, "7870": 1090, "104132": 1090, "hmdb0130984": 1090, "8227": 1090, "104133": 1090, "hmdb0130987": 1090, "8630": 1090, "104134": 1090, "Such": 1090, "ramp_map": 1090, "45": 1090, "brenda": 1090, "kegg_glycan": 1090, "lipidbank": 1090, "ncbiprotein": 1090, "plantfa": 1090, "swisslipid": 1090, "wikidata": 1090, "29": 1090, "lmfa00000008": 1090, "slm": 1090, "000390048": 1090, "lmfa01010001": 1090, "000000510": 1090, "lmfa01010002": 1090, "000000449": 1090, "lmfa01010003": 1090, "000001194": 1090, "lmfa01010004": 1090, "000001195": 1090, "lmfa01010005": 1090, "000389552": 1090, "lmfa01010006": 1090, "000001196": 1090, "lmfa01010007": 1090, "000389947": 1090, "lmfa01010008": 1090, "000000853": 1090, "lmfa01010010": 1090, "000000855": 1090, "lmfa01010011": 1090, "000389946": 1090, "lmfa01010012": 1090, "000000719": 1090, "lmfa01010013": 1090, "000001198": 1090, "lmfa01010014": 1090, "000000825": 1090, "lmfa01010015": 1090, "000001199": 1090, "lmfa01010017": 1090, "000001095": 1090, "lmfa01010019": 1090, "000001205": 1090, "lmfa01010020": 1090, "000000829": 1090, "lmfa01010021": 1090, "000001207": 1090, "lmfa01010022": 1090, "000000827": 1090, "lmfa01010023": 1090, "000001128": 1090, "lmfa01010024": 1090, "000000414": 1090, "lmfa01010026": 1090, "000000539": 1090, "lmfa01010027": 1090, "000000980": 1090, "lmfa01010028": 1090, "000000540": 1090, "lmfa01010030": 1090, "000000543": 1090, "lmfa01010032": 1090, "000000544": 1090, "lmfa01010034": 1090, "00000": 1090, "44684": 1090, "got": 1090, "63": 1090, "30": 1090, "lmst02030086": 1090, "000485328": 1090, "lmst02030087": 1090, "000485330": 1090, "lmsp06020013": 1090, "000000534": 1090, "lmst02020001": 1090, "000001055": 1090, "000485315": 1090, "35218": 1090, "lmpr0104010007": 1090, "000389242": 1090, "35219": 1090, "lmpr0104030005": 1090, "000390232": 1090, "35220": 1090, "lmpr0104030006": 1090, "000390227": 1090, "35221": 1090, "lmpr01070626": 1090, "000000432": 1090, "35222": 1090, "lmpr01090015": 1090, "000389419": 1090, "35223": 1090, "get_mapp": 1090, "38": 1090, "medchemexpress": 1090, "actor": 1090, "affymetrix": 1090, "alzforum": 1090, "alzforum_mut": 1090, "araport": 1090, "atla": [1090, 1093], "bindingdb": 1090, "carotenoiddb": 1090, "cas_id": 1090, "cgnc": 1090, "chemicalbook": 1090, "clinicaltri": 1090, "clinic": 1090, "7422": 1090, "input_class": 1090, "rampmap": 1090, "3238": 1090, "insight": 1090, "99": 1090, "131431": 1090, "hmdb0094709": 1090, "iter_metabolit": 1090, "04": 1090, "0x60b1846262c0": 1090, "On": 1090, "direct_par": 1090, "kingdom": 1090, "sub_class": 1090, "molecular_framework": 1090, "alternative_par": 1090, "spectra": 1090, "spectrum": 1090, "spectrum_id": 1090, "biological_properti": 1090, "cellular_loc": 1090, "biospecimen_loc": 1090, "biospecimen": 1090, "tissue_loc": 1090, "kegg_map_id": 1090, "smpdb_id": 1090, "experimental_properti": 1090, "4037": 1090, "gene_properti": 1090, "chromosome_loc": 1090, "locu": 1090, "gene_sequ": 1090, "protein_properti": 1090, "residue_numb": 1090, "molecular_weight": 1090, "theoretical_pi": 1090, "polypeptide_sequ": 1090, "transmembrane_region": 1090, "signal_region": 1090, "pfam_id": 1090, "metabolite_associ": 1090, "go_classif": 1090, "go_class": 1090, "general_refer": 1090, "general_": 1090, "2072": 1090, "metabolites_raw": 1090, "proteins_raw": 1090, "cystein": 1090, "thereof": 1090, "carboxi": 1090, "hydrogen": 1090, "glycin": 1090, "heteroatom": 1090, "carboxyl": 1090, "analogu": 1090, "aromat": 1090, "heteromonocycl": 1090, "aralkylamin": 1090, "azacycl": 1090, "carbonyl": 1090, "heteroaromat": 1090, "hydrocarbon": 1090, "imidazolyl": 1090, "monoalkylamin": 1090, "monocarboxyl": 1090, "substitut": 1090, "imidazol": 1090, "oxid": 1090, "132354": 1090, "hmdb0000005": 1090, "ketobutyr": 1090, "hmdb0000008": 1090, "hydroxybutyr": 1090, "hmdb0000010": 1090, "methoxyestron": 1090, "hmdb0000011": 1090, "hmdb0000012": 1090, "deoxyuridin": 1090, "hmdb0000014": 1090, "deoxycytidin": 1090, "hmdb0000015": 1090, "cortexolon": 1090, "hmdb0000016": 1090, "deoxycorticosteron": 1090, "hmdb0000017": 1090, "pyridox": 1090, "hmdb0000019": 1090, "ketoisovaler": 1090, "hmdb0000020": 1090, "hydroxyphenylacet": 1090, "hmdb0000021": 1090, "iodotyrosin": 1090, "hmdb0000022": 1090, "methoxytyramin": 1090, "hmdb0000023": 1090, "hydroxyisobutyr": 1090, "hmdb00": 1090, "1291": 1090, "gene_nam": 1090, "nucleotidas": 1090, "nt5e": 1090, "deoxycytidyl": 1090, "deaminas": 1090, "dctd": 1090, "ump": 1090, "cmp": 1090, "cmpk1": 1090, "cytosol": 1090, "1b": 1090, "nt5c1b": 1090, "1a": 1090, "nt5c1a": 1090, "deoxyribonucleotidas": 1090, "nt5c": 1090, "dck": 1090, "mitochondri": 1090, "nt5m": 1090, "hydroxymethylglutaryl": 1090, "coa": 1090, "lyas": 1090, "hmgcl": 1090, "atp": 1090, "citrat": 1090, "synthas": 1090, "acli": 1090, "histon": 1090, "acetyltransferas": 1090, "ep300": 1090, "pyruv": 1090, "dehydrogenas": 1090, "e1": 1090, "subunit": 1090, "beta": 1090, "pdhb": 1090, "acetyl": [1090, 1093], "acat2": 1090, "creb": 1090, "crebbp": 1090, "diamin": 1090, "acetyltransf": 1090, "1478": 1090, "metabolites_t": 1090, "nameless": 1090, "_tabl": 1090, "nc": 1090, "ccc": 1090, "tyeybosbbbhjiv": 1090, "afendnxgafykqo": 1090, "vkhmyheasa": 1090, "12ccc": 1090, "c3": 1090, "wheuwnkscxykbu": 1090, "qpwughhjsa": 1090, "whbmmwsbfzvssr": 1090, "gsvougtgsa": 1090, "1o": 1090, "n1c": 1090, "nc1": 1090, "mxhrcpnrjammim": 1090, "shyzeuofsa": 1090, "1c": 1090, "o1": 1090, "cktsbutuhbmzgz": 1090, "12cc": 1090, "whbhbvvogneclv": 1090, "obqkjfggsa": 1090, "zesrjspzrdmnhi": 1090, "yfwfahhusa": 1090, "c1o": 1090, "hxacouqixzgnbf": 1090, "1h": 1090, "yl": 1090, "propanediamin": 1090, "propylenediamin": 1090, "ketobutano": 1090, "oxobutyr": 1090, "met": 1090, "hydroxybutano": 1090, "meth": 1090, "hydro": 1090, "du": 1090, "deo": 1090, "5r": 1090, "hydroxymet": 1090, "desoxi": 1090, "hydroxycorticosteron": 1090, "cortodoxo": 1090, "pregnen": 1090, "dion": 1090, "hydroxyp": 1090, "hydroxymethylp": 1090, "hmdb_synonym": 1090, "propano": 1090, "mhi": 1090, "n1": 1090, "dihydrochlorid": 1090, "prop": 1090, "291": 1090, "hydroxymethyl": 1090, "isonicotin": 1090, "292": 1090, "pyridoxin": 1090, "293": 1090, "pyridoxinecarboxyl": 1090, "294": 1090, "pyridoxyl": 1090, "295": 1090, "296": 1090, "grow": 1090, "taxonomy__alternative_par": 1090, "taxonomy__class": 1090, "taxonomy__descript": 1090, "taxonomy__direct_par": 1090, "taxonomy__kingdom": 1090, "taxonomy__molecular_framework": 1090, "taxonomy__sub_class": 1090, "taxonomy__substitu": 1090, "compoun": 1090, "kno": 1090, "amin": 1090, "aralkyla": 1090, "organopnictogen": 1090, "comp": 1090, "organonitrogen": 1090, "aliphat": 1090, "acycl": 1090, "keton": 1090, "keto": 1090, "ket": 1090, "fatti": 1090, "alcohol": 1090, "hy": 1090, "unsubstitut": 1090, "benzenoid": 1090, "oxo": 1090, "steroid": 1090, "homopolycycl": 1090, "estran": 1090, "oxost": 1090, "hyd": 1090, "pyrimidin": 1090, "nucleosid": 1090, "deoxyribonucleosid": 1090, "aminopyrimidin": 1090, "hydroxysteroid": 1090, "oxosteroid": 1090, "del": 1090, "delta": 1090, "carbo": 1090, "pyridin": 1090, "pyridinecarboxyl": 1090, "heteromon": 1090, "gave": 1090, "birth": 1090, "000": [1090, 1093], "2235": 1090, "vinylog": 1090, "organooxygen": 1090, "2236": 1090, "2237": 1090, "2238": 1090, "2239": 1090, "2240": 1090, "metabolites_map": 1090, "proteins_map": 1090, "c00109": 1090, "c00526": 1090, "c00847": 1090, "c00881": 1090, "c00986": 1090, "c01089": 1090, "c03205": 1090, "ccc2": 1090, "12c": 1090, "c05299": 1090, "c05488": 1090, "c05984": 1090, "pretti": 1090, "h3": 1090, "6h": 1090, "8h2": 1090, "1h3": 1090, "t6": 1090, "m0": 1090, "isom": 1090, "hydrid": 1090, "tau": 1090, "n3": 1090, "81": 1090, "figur": [1090, 1092], "hmdb_name": 1090, "esummari": 1090, "eutil": 1090, "6063": 1090, "uid": 1090, "gd": 1090, "gpl": 1090, "erank": 1090, "8esiq": 1090, "joaz": 1090, "titl": 1090, "diurnal": 1090, "circadian": 1090, "arabidopsi": 1090, "thaliana": 1090, "gdstype": 1090, "valtyp": 1090, "ratio": 1090, "idref": 1090, "genenam": 1090, "genedesc": 1090, "ugnam": 1090, "at4g11560": 1090, "ugdesc": 1090, "bromo": 1090, "adjac": 1090, "bah": 1090, "nucdesc": 1090, "9366": 1090, "lambda": 1090, "prl2": 1090, "cdna": 1090, "clone": 1090, "135j10t7": 1090, "entrez_gene_id": 1090, "gbacc": 1090, "t46103": 1090, "ptacc": 1090, "cloneid": 1090, "orf": 1090, "spotid": 1090, "vmin": 1090, "395000": 1090, "vmax": 1090, "201000": 1090, "a1b3c1": 1090, "abscal": 1090, "aflag": 1090, "aoutl": 1090, "rstd": 1090, "rmean": 1090, "get_pubm": 1090, "33209674": 1090, "42": 1090, "pubdat": 1090, "oct": 1090, "epubd": 1090, "transl": 1090, "androl": 1090, "urol": 1090, "kim": 1090, "authtyp": 1090, "clusterid": 1090, "lee": 1090, "sh": 1090, "dh": 1090, "jy": 1090, "hong": 1090, "ih": 1090, "lastauthor": 1090, "gemcitabin": 1090, "versu": 1090, "chemotherapi": 1090, "patient": 1090, "metastat": 1090, "urotheli": 1090, "carcinoma": 1090, "retrospect": 1090, "sorttitl": 1090, "volum": 1090, "2113": 1090, "2121": 1090, "lang": 1090, "eng": 1090, "2263": 1090, "epiderm": 1090, "growth": 1090, "currentid": 1090, "chromosom": 1090, "geneticsourc": 1090, "maploc": 1090, "7p11": 1090, "otheralias": 1090, "erbb": 1090, "erbb1": 1090, "errp": 1090, "her1": 1090, "nisbd2": 1090, "pig61": 1090, "mena": 1090, "otherdesign": 1090, "viii": 1090, "avian": 1090, "erythroblast": 1090, "leukemia": 1090, "viral": 1090, "erb": 1090, "oncogen": 1090, "40": 1090, "prolifer": 1090, "61": 1090, "tyrosin": 1090, "b2": 1090, "proto": 1090, "nomenclaturesymbol": 1090, "nomenclaturenam": 1090, "nomenclaturestatu": 1090, "mim": 1090, "131550": 1090, "genomicinfo": 1090, "chrloc": 1090, "chraccver": 1090, "nc_000007": 1090, "chrstart": 1090, "55019016": 1090, "chrstop": 1090, "55211627": 1090, "exoncount": 1090, "geneweight": 1090, "580393": 1090, "5417": 1090, "90": 1090, "min": 1090, "dozen": [1090, 1093], "sooner": 1090, "accid": 1090, "cache_delete_on": 1090, "depod_enzyme_substr": 1090, "59": 1090, "cache_off": 1090, "cache_print_on": 1090, "dry_run_on": 1090, "debug_on": 1090, "curl_connect_timeout": 1090, "establish": 1090, "curl_extended_timeout": 1090, "exception": 1090, "curl_retri": 1090, "curl_timeout": 1090, "360": 1090, "deep": 1090, "stack": 1090, "investig": 1090, "difficult": 1090, "preserve_on": 1090, "depod_curl": 1090, "0x6947386dc8b0": 1090, "fileobj": 1090, "bioss": 1090, "uni": 1090, "freiburg": 1090, "de": 1090, "depod_201405_human_phosphatas": 1090, "mitab": 1090, "_io": 1090, "textiowrapp": 1090, "dene": 1090, "6a711369ecf9dcff8c5ed88996685b54": 1090, "iso": 1090, "8859": 1090, "okai": 1090, "wether": 1090, "successfulli": 1090, "night": 1090, "transient": 1090, "disappear": 1090, "perman": 1090, "mayb": 1090, "third": 1090, "parti": 1090, "lot": [1090, 1092], "notebook": 1090, "pypath_log": 1090, "s3e92": 1090, "535b06d53a59e75bb693369bc5fdc556": 1090, "112963": 1090, "verifi": 1090, "certif": 1090, "expir": 1090, "miss": 1090, "encrypt": 1090, "trust": 1090, "reach": [1090, 1091], "global": 1090, "comput": 1090, "program": 1090, "correctli": 1090, "duti": 1090, "procedur": 1090, "97": 1090, "cipher": 1090, "libcurl": 1090, "anaconda": 1090, "java": 1090, "mozilla": 1090, "firefox": 1090, "seriou": 1090, "rc": 1090, "get_control": 1090, "resourcecontrol": 1090, "0x6cc25e25dcf0": 1090, "BY": 1090, "sa": 1090, "pw_academ": 1090, "pw_commerci": 1090, "len": 1090, "pdzbase": 1090, "gplv3": 1090, "mit": 1090, "net_academ": 1090, "net_commerci": 1090, "79": 1090, "6833": 1090, "25607": 1090, "6429": 1090, "23288": 1090, "usabl": 1090, "400": 1090, "fine": 1090, "grain": 1090, "expert": 1090, "thought": 1090, "owner": 1090, "permiss": 1090, "pai": 1090, "fee": 1090, "product": 1090, "yearusedreleas": 1090, "2011": 1090, "bioinformat": 1090, "690": 1090, "d321": 1090, "suppl_1": 1090, "d235": 1090, "univ": 1090, "lyon1": 1090, "fr": 1090, "omictool": 1090, "tool": 1090, "19147664": 1090, "20852260": 1090, "25378329": 1090, "mammalia": 1090, "bairoch": 1090, "repor": 1090, "4479": 1090, "197": 1090, "collect_enzyme_substr": 1090, "08": 1090, "enzymesubstrateresourc": 1090, "phosphoelm": 1090, "li2012": 1090, "phosphonetwork": [1090, 1093], "mimp": 1090, "protmapp": 1090, "202": 1090, "phosphoelm_enzyme_substr": 1090, "larger": 1090, "netr": 1090, "deathdomain": 1090, "1864": 1090, "05": 1090, "7979": 1090, "35550": 1090, "8002": 1090, "35748": 1090, "older": 1090, "mentin": 1090, "focu": 1090, "constraint": 1090, "lncrna_protein": 1090, "06": 1090, "trpc1": 1090, "kcnma1": 1090, "ppp3ca": 1090, "calm2": 1090, "calm3": 1090, "calm1": 1090, "casp1": 1090, "casp4": 1090, "cacna1c": 1090, "cav1": 1090, "ev": 1090, "118492": 1090, "sync": 1090, "facilit": 1090, "p48995": 1090, "q12791": 1090, "q08209": 1090, "p29466": 1090, "p49662": 1090, "p56539": 1090, "cav3": 1090, "q14247": 1090, "cttn": 1090, "drd2": 1090, "p11532": 1090, "dmd": 1090, "fgfr1": 1090, "q02790": 1090, "fkbp4": 1090, "q86ym7": 1090, "homer1": 1090, "q9nsc5": 1090, "homer3": 1090, "q99750": 1090, "mdfi": 1090, "q14571": 1090, "itpr2": 1090, "q14573": 1090, "itpr3": 1090, "p29966": 1090, "marck": 1090, "grm1": 1090, "p20591": 1090, "mx1": 1090, "p62166": 1090, "ncs1": 1090, "q96d31": 1090, "orai1": 1090, "orai2": 1090, "q9brq5": 1090, "orai3": 1090, "p11171": 1090, "epb41": 1090, "p61586": 1090, "rhoa": 1090, "q9y225": 1090, "rnf24": 1090, "p21817": 1090, "ryr1": 1090, "p16615": 1090, "atp2a2": 1090, "q93084": 1090, "atp2a3": 1090, "p60880": 1090, "snap25": 1090, "q13586": 1090, "sti": 1090, "30573": 1090, "egf": 1090, "fantom5": 1090, "cellsign": 1090, "ia": 1090, "10085134": 1090, "10209155": 1090, "10788520": 1090, "12093292": 1090, "12297050": 1090, "12620237": 1090, "12648462": 1090, "15620700": 1090, "16274239": 1090, "17145710": 1090, "19531499": 1090, "20458382": 1090, "21071413": 1090, "23331499": 1090, "3494473": 1090, "6289330": 1090, "8639530": 1090, "get_": 1090, "_by_": 1090, "nan": 1090, "44033": 1090, "q14289": 1090, "q9ulz3": 1090, "44034": 1090, "p54646": 1090, "q9y2i7": 1090, "44035": 1090, "q9bxm7": 1090, "q9y2n7": 1090, "44036": 1090, "p49137": 1090, "q9y385": 1090, "44037": 1090, "q9uhc7": 1090, "p04637": 1090, "44038": 1090, "unique_pair": 1090, "65": 1090, "source_genesymbol": 1090, "target_genesymbol": 1090, "consensus_direct": 1090, "consensus_stimul": 1090, "consensus_inhibit": 1090, "19168436": 1090, "25139746": 1090, "23228564": 1090, "11290752": 1090, "11983166": 1090, "12601176": 1090, "36729": 1090, "ptk2b": 1090, "pycard": 1090, "27796369": 1090, "36730": 1090, "prkaa2": 1090, "pikfyv": 1090, "24070423": 1090, "36731": 1090, "pink1": 1090, "hif3a": 1090, "27551449": 1090, "36732": 1090, "mapkapk2": 1090, "ube2j1": 1090, "24020373": 1090, "36733": 1090, "mkrn1": 1090, "tp53": 1090, "19536131": 1090, "36734": 1090, "extra_node_attr": 1090, "customis": 1090, "webservice_interactions_df": 1090, "dorothea_tfb": 1090, "dorothea_coexp": 1090, "ncbi_tax_id_sourc": 1090, "entity_type_sourc": 1090, "ncbi_tax_id_target": 1090, "entity_type_target": 1090, "trip_method": 1090, "immunoprecipit": 1090, "fluoresc": 1090, "downstream": 1090, "benefici": 1090, "undesir": 1090, "grn": 1090, "network_allow_loop": 1090, "wish": 1090, "pw": 1090, "gr": 1090, "count_loop": 1090, "149": 1090, "33571": 1090, "281262": 1090, "topologi": [1090, 1093], "network_expand_complex": 1090, "fos_jun": 1090, "fos_junb": 1090, "fos_jund": 1090, "fosl1_jun": 1090, "fosl2_jun": 1090, "jun_junb": 1090, "jun_jund": 1090, "fosb_jun": 1090, "fosl1_junb": 1090, "fosl1_jund": 1090, "fosl2_junb": 1090, "fosl2_jund": 1090, "junb": 1090, "junb_jund": 1090, "fosb_junb": 1090, "jund": 1090, "fosb_jund": 1090, "nfkb1": 1090, "nfkb1_nfkb2": 1090, "nfkb1_relb": 1090, "nfkb1_rela": 1090, "nfkb1_rel": 1090, "nfkb2": 1090, "nfkb2_relb": 1090, "nfkb2_rela": 1090, "nfkb2_rel": 1090, "relb": 1090, "rela_relb": 1090, "rel_relb": 1090, "rela": 1090, "rel_rela": 1090, "rel": 1090, "cplex_ent": 1090, "q04206_q04864": 1090, "isinst": 1090, "p17535": 1090, "p15407": 1090, "p04040": 1090, "cat": 1090, "extri_collectri": 1090, "10022519": 1090, "10329043": 1090, "collectr": 1090, "p05412": 1090, "p15408": 1090, "p17275": 1090, "54980": 1090, "p01100": 1090, "p01270": 1090, "pth": 1090, "9989817": 1090, "54981": 1090, "54982": 1090, "p53539": 1090, "54983": 1090, "54984": 1090, "23235": 1090, "iloc": 1090, "p15407_p17535": 1090, "p01106": 1090, "o14746": 1090, "myc": 1090, "tert": 1090, "67945": 1090, "q01196": 1090, "q13094": 1090, "runx1": 1090, "lcp2": 1090, "67946": 1090, "q6mzq0": 1090, "prr5l": 1090, "67947": 1090, "q15672": 1090, "p08151": 1090, "twist1": 1090, "gli1": 1090, "67948": 1090, "p22415": 1090, "q5sre5": 1090, "usf1": 1090, "nup188": 1090, "67949": 1090, "q9uqr1": 1090, "q5vyx0": 1090, "znf148": 1090, "rnl": 1090, "67950": 1090, "familiar": 1090, "to_csv": 1090, "kinaseextra": [1090, 1093], "ligrecextra": [1090, 1093], "pathwayextra": [1090, 1093], "mirnatarget": [1090, 1093], "dorothea_cur": 1090, "dorothea_chipseq": 1090, "ncomplex": 1090, "12036993": 1090, "12538496": 1090, "17935786": 1090, "7489329": 1090, "7651432": 1090, "7818486": 1090, "8867782": 1090, "9030359": 1090, "9136992": 1090, "9142914": 1090, "9168892": 1090, "9687385": 1090, "p05412_p15408": 1090, "extri_c": 1090, "1004": 1090, "gabarapl3": 1090, "q9by60": 1090, "shortcut": 1090, "id_from_label": 1090, "o75385": 1090, "ulk1": [1090, 1093], "id_from_label0": 1090, "certainli": 1090, "q15796": 1090, "q62432": 1090, "8408": 1090, "autumn": 1090, "uniprotmap": 1090, "uploadlist": 1090, "outdat": 1090, "inputs_format": 1090, "uniprotlistmap": 1090, "biomartmap": 1090, "arraymap": 1090, "promap": 1090, "unichemmap": 1090, "filemap": 1090, "hmdbmap": 1090, "fly": 1090, "dispatch": 1090, "geneid": 1090, "input_cl": 1090, "29850": 1090, "eas": 1090, "ac_queri": 1090, "ac_map": 1090, "biomart_map": 1090, "pro_map": 1090, "array_map": 1090, "bigg": 1090, "biocyc": 1090, "cas_registry_numb": 1090, "ch": 1090, "8561": 1090, "tbl": 1090, "20243": 1090, "q00604": 1090, "ndp": 1090, "q9hb19": 1090, "plekha2": 1090, "q16718": 1090, "ndufa5": 1090, "p55769": 1090, "snu13": 1090, "q92886": 1090, "neurog1": 1090, "q6t4r5": 1090, "nh": 1090, "lcn2": 1090, "q86xr2": 1090, "fam129c": 1090, "q5t2w1": 1090, "pdzk1": 1090, "q9bsh3": 1090, "nicn1": 1090, "20375": 1090, "q96l92": 1090, "snx27": 1090, "20376": 1090, "q9unh6": 1090, "snx7": 1090, "20377": 1090, "q5vwj9": 1090, "snx30": 1090, "20378": 1090, "siglec1": 1090, "20379": 1090, "q96bd0": 1090, "slco4a1": 1090, "20380": 1090, "human_mouse_genesymbol": 1090, "confdenc": 1090, "omaortholog": 1090, "12704": 1090, "5703125": 1090, "h4c3": 1090, "h4c1": 1090, "1262": 1090, "050049": 1090, "h4c12": 1090, "h4c11": 1090, "h4c9": 1090, "18446": 1090, "gdap2": 1090, "5553": 1090, "779785": 1090, "18447": 1090, "itga8": 1090, "10772": 1090, "969727": 1090, "18448": 1090, "sema3f": 1090, "9121": 1090, "080078": 1090, "18449": 1090, "eepd1": 1090, "5874": 1090, "350098": 1090, "18450": 1090, "drg2": 1090, "4423": 1090, "589844": 1090, "18451": 1090, "everywher": 1090, "deal": 1090, "hsapien": 1090, "ensmebl": 1090, "hsa": 1090, "ensure_ncbi_tax_id": 1090, "ensure_latin_nam": 1090, "cow": 1090, "bo": 1090, "tauru": 1090, "ensure_common_nam": 1090, "erithacu": 1090, "rubecula": 1090, "european": 1090, "robin": 1090, "uniprot_taxid": 1090, "p53104": 1090, "saccharomyc": 1090, "cerevisia": 1090, "divers": 1090, "essenti": 1090, "harbor": 1090, "littl": 1090, "119": 1090, "iuniprot": 1090, "all_swissprot": 1090, "all_trembl": 1090, "3m": 1090, "86440": 1090, "17131": 1090, "69300": 1090, "a0a8d0h0c2": 1090, "inde": 1090, "125": 1090, "is_uniprot": 1090, "122": 1090, "is_swissprot": 1090, "123": 1090, "126": 1090, "protein_datasheet": 1090, "egfr_human": 1090, "1210": 1090, "o00688": 1090, "o00732": 1090, "p06268": 1090, "q14225": 1090, "q68gs5": 1090, "q92795": 1090, "q9bzs2": 1090, "q9gzx1": 1090, "q9h2c9": 1090, "q9h3c9": 1090, "q9umd7": 1090, "q9umd8": 1090, "q9umg5": 1090, "dt": 1090, "jul": 1090, "1986": 1090, "nov": 1090, "1997": 1090, "283": 1090, "recnam": 1090, "eco": 1090, "0000305": 1090, "altnam": 1090, "flag": 1090, "precursor": 1090, "gn": 1090, "0000312": 1090, "3236": 1090, "eukaryota": 1090, "metazoa": 1090, "chordata": 1090, "craniata": 1090, "vertebrata": 1090, "euteleostomi": 1090, "eutheria": 1090, "euarchontoglir": 1090, "primat": 1090, "haplorrhini": 1090, "catarrhini": 1090, "hominida": 1090, "ox": 1090, "ncbi_taxid": 1090, "rn": 1090, "rp": 1090, "nucleotid": 1090, "58080": 1090, "131": 1090, "egfr_histori": 1090, "uniprot_histori": 1090, "uniprotrecordhistori": 1090, "2022_04": 1090, "282": 1090, "2022_03": 1090, "281": 1090, "2022_02": 1090, "280": 1090, "2022_01": 1090, "279": 1090, "2021_04": 1090, "2021": 1090, "278": 1090, "50933": 1090, "132": 1090, "uniprot_recent_vers": 1090, "133": 1090, "uniprot_history_recent_datasheet": 1090, "deploi": 1090, "transit": 1090, "uniprot_data": 1090, "uniprot_queri": 1090, "situat": 1090, "uniprot_preprocess": 1090, "clutter": 1090, "a0a087x1c5": 1090, "cytochrom": 1090, "p450": 1090, "a0a0b4j2f2": 1090, "superfamili": 1090, "camk": 1090, "ser": 1090, "thr": 1090, "ampk": 1090, "a0a0k2s4q6": 1090, "cd300": 1090, "a0a1b0gtw7": 1090, "peptidas": 1090, "m8": 1090, "a0av02": 1090, "slc12a": 1090, "transport": 1090, "a0av96": 1090, "rrm": 1090, "rbm47": 1090, "a0avf1": 1090, "ift56": 1090, "a0avi4": 1090, "tmem129": 1090, "a0avk6": 1090, "dp": 1090, "a0avt1": 1090, "ubiquitin": [1090, 1093], "a0fgr8": 1090, "synaptotagmin": 1090, "a0fgr9": 1090, "a0jlt2": 1090, "mediat": 1090, "a0jp26": 1090, "pote": 1090, "a0mz66": 1090, "shootin": 1090, "a0pjk1": 1090, "sodium": 1090, "symport": 1090, "ssf": 1090, "tc": 1090, "a0pjy2": 1090, "krueppel": 1090, "c2h2": 1090, "zinc": 1090, "finger": 1090, "a0pk00": 1090, "tmem120": 1090, "a0pk11": 1090, "clarin": 1090, "a1a4y4": 1090, "trafac": 1090, "dynamin": 1090, "gtpase": 1090, "irg": 1090, "a1a519": 1090, "fam170": 1090, "a1a5b4": 1090, "anoctamin": 1090, "a1a5c7": 1090, "orga": 1090, "510530": 1090, "uiprot": 1090, "funcion": 1090, "up000004102": 1090, "d1ym56": 1090, "d1ymj2": 1090, "d1yn32": 1090, "d1ynb3": 1090, "d1ypz1": 1090, "d1yr07": 1090, "d1yr15": 1090, "d1yr93": 1090, "d1yrb4": 1090, "d1yrb7": 1090, "cleaner": 1090, "imperfect": 1090, "job": 1090, "badli": 1090, "136": 1090, "uniprot_taxonomi": 1090, "p00521": 1090, "abelson": 1090, "murin": 1090, "viru": 1090, "p03333": 1090, "h8zm73": 1090, "abi": 1090, "balsamea": 1090, "balsam": 1090, "fir": 1090, "pinu": 1090, "h8zm71": 1090, "q9mv51": 1090, "firma": 1090, "momi": 1090, "o81086": 1090, "grandi": 1090, "grand": 1090, "o24474": 1090, "o24475": 1090, "o64404": 1090, "o64405": 1090, "q948z0": 1090, "q9m7d1": 1090, "q9m7d0": 1090, "o22340": 1090, "q9m7c9": 1090, "q5k3v1": 1090, "homolepi": 1090, "nikko": 1090, "p21715": 1090, "abrothrix": 1090, "jelskii": 1090, "akodon": 1090, "jelski": 1090, "altiplano": 1090, "p11140": 1090, "abru": 1090, "56985": 1090, "139": 1090, "uniprot_ncbi_taxids_2": 1090, "648330": 1090, "aed": 1090, "albopictu": 1090, "densoviru": 1090, "isol": 1090, "boublik": 1090, "1994": 1090, "aaldnv": 1090, "10804": 1090, "adeno": 1090, "aav": 1090, "648242": 1090, "srivastava": 1090, "1982": 1090, "118452": 1090, "abacion": 1090, "magnum": 1090, "milliped": 1090, "72259": 1090, "abaei": 1090, "nicipp": 1090, "sleepi": 1090, "orang": 1090, "butterfli": 1090, "eurema": 1090, "102642": 1090, "abax": 1090, "parallelepipedu": 1090, "ground": 1090, "beetl": 1090, "392897": 1090, "abalist": 1090, "stellari": 1090, "starri": 1090, "triggerfish": 1090, "balist": 1090, "75332": 1090, "abbottina": 1090, "rivulari": 1090, "chines": 1090, "gudgeon": 1090, "gobio": 1090, "515833": 1090, "abdopu": 1090, "aculeatu": 1090, "engl": 1090, "118050": 1090, "140": 1090, "uniprot_loc": 1090, "q96ec8": 1090, "uniprotloc": 1090, "golgi": 1090, "apparatu": 1090, "q6zms4": 1090, "nucleu": 1090, "q8n8l2": 1090, "q15916": 1090, "q3mis6": 1090, "q6p280": 1090, "q969w1": 1090, "endoplasm": 1090, "reticulum": 1090, "o14978": 1090, "q66k41": 1090, "q15937": 1090, "q9p2j8": 1090, "q8nd82": 1090, "q9np64": 1090, "nucleolu": 1090, "143466": 1090, "141": 1090, "uniprot_keyword": 1090, "p63120": 1090, "uniprotkeyword": 1090, "aspartyl": 1090, "proteas": 1090, "autocatalyt": 1090, "cleavag": 1090, "erv": 1090, "hydrolas": 1090, "ribosom": 1090, "frameshift": 1090, "transpos": 1090, "splice": 1090, "helix": 1090, "metal": 1090, "unipro": 1090, "445111": 1090, "142": 1090, "uniprot_famili": 1090, "uniprotfamili": 1090, "a2": 1090, "herv": 1090, "hml": 1090, "yip1": 1090, "q86uk7": 1090, "znf598": 1090, "dhhc": 1090, "palmitoyltransferas": 1090, "q8iuh4": 1090, "77892": 1090, "143": 1090, "uniprot_tissu": 1090, "uniprottissu": 1090, "brain": 1090, "colon": 1090, "heart": 1090, "kidnei": 1090, "leukocyt": 1090, "liver": 1090, "lung": 1090, "ovari": 1090, "pancrea": 1090, "placenta": 1090, "prostat": 1090, "skelet": 1090, "muscl": [1090, 1093], "intestin": 1090, "spleen": 1090, "testi": 1090, "318790": 1090, "144": 1090, "uniprot_topologi": 1090, "uniprottopologi": 1090, "cytoplasm": 1090, "137": 1090, "146": 1090, "206": 1090, "212": 1090, "lumen": 1090, "106": 1090, "115": 1090, "168": 1090, "184": 1090, "234": 1090, "236": 1090, "85": 1090, "105": 1090, "116": 1090, "147": 1090, "167": 1090, "185": 1090, "205": 1090, "213": 1090, "233": 1090, "138": 1090, "198": 1090, "288": 1090, "377": 1090, "220": 1090, "544230": 1090, "bulk": 1090, "153": 1090, "q14457": 1090, "becn1": 1090, "154": 1090, "156": 1090, "subcellular_loc": 1090, "112631": 1090, "1050": 1090, "preautophagosom": 1090, "starvat": 1090, "puncat": 1090, "primarili": 1090, "sequest": 1090, "portion": 1090, "autophagosom": 1090, "mepgrggtetvgkfefsrkdlighgafavvfkgrhrekhdlevavkcinkknlaksqtllgkeikilkelkhenivalydfqemansvylvmeycnggdladylhamrtlsedtirlflqqiagamrllhskgiihrdlkpqnillsnpagrranpnsirvkiadfgfarylqsnmmaatlcgspmymapevimsqhydgkadlwsigtivyqcltgkapfqasspqdlrlfyeknktlvptipretsaplrqlllallqrnhkdrmdfdeffhhpfldaspsvrksppvpvpsypssgsgssssssstshlasppslgemqqlqktlaspadtagflhssrdsggskdsscdtddfvmvpaqfpgdlvaeapsakpppdslmcsgsslvasagleshgrtpspsppcssspspsgragpfsssrcgasvpipvptqvqnyqriernlqsptqfqtprssairrsgstsplgfaraspsppahaehggvlarkmslgggrpytpspqvgtiperpgwsgtpspqgaemrggrsprpgssapehsprtsglgcrlhsapnlsdlhvvrpklpkpptdplgavfsppqasppqpshglqscrnlrgspklpdflqrnplppilgsptkavpsfdfpktpssqnllallarqgvvmtpprnrtlpdlsevgpfhgqplgpglrpgedpkgpfgrsfstsrltdlllkaafgtqapdpgsteslqek": 1090, "1329": 1090, "ineffici": 1090, "hand": 1090, "158": 1090, "ordereddict": 1090, "134277": 1090, "51896": 1090, "450": 1090, "159": 1090, "print_featur": 1090, "There": 1090, "character": 1090, "160": 1090, "function_o": 1090, "subcellula": 1090, "r_genecard": 1090, "r_locat": 1090, "alternativ": 1090, "20254": 1090, "exploit": 1090, "162": 1090, "q9uq28": 1090, "8m": 1090, "acquir": 1090, "mtor": [1090, 1093], "s473": 1090, "sparser": 1090, "t450": 1090, "t308": 1090, "e_ptm": 1090, "473": 1090, "14761976": 1090, "15047712": 1090, "15364915": 1090, "15718470": 1090, "15899889": 1090, "16221682": 1090, "17013611": 1090, "19844585": 1090, "20333297": 1090, "20489726": 1090, "21157483": 1090, "21592956": 1090, "23006971": 1090, "8978681": 1090, "9736715": 1090, "dabas": 1090, "p63104": 1090, "ywhaz": 1090, "hprd_mimp": 1090, "11956222": 1090, "12861023": 1090, "phosphosite_mimp": 1090, "phosp": 1090, "15071501": 1090, "p45983": 1090, "mapk8": 1090, "phosph": 1090, "15696159": 1090, "p06493": 1090, "cdk1": 1090, "712": 1090, "rea": 1090, "15525677": 1090, "18220": 1090, "2171679": 1090, "41421": 1090, "p29597": 1090, "tyk2": 1090, "p51692": 1090, "stat5b": 1090, "699": 1090, "10830280": 1090, "11751923": 1090, "12411494": 1090, "41422": 1090, "q06418": 1090, "tyro3": 1090, "p19174": 1090, "plcg1": 1090, "771": 1090, "12601080": 1090, "15144186": 1090, "15592455": 1090, "41423": 1090, "q9h4a3": 1090, "wnk1": 1090, "q8tax0": 1090, "osr1": 1090, "18270262": 1090, "41424": 1090, "q96j92": 1090, "wnk4": 1090, "335": 1090, "15883153": 1090, "41425": 1090, "q9nyl2": 1090, "map3k20": 1090, "q92903": 1090, "cds1": 1090, "10973490": 1090, "ve": 1090, "power": 1090, "believ": 1090, "ever": 1090, "topic": 1090, "186": 1090, "seqc": 1090, "get_seq": 1090, "get_region": 1090, "tfiirclqwt": 1090, "187": 1090, "human_proteom": 1090, "swissprot_seq": 1090, "0x689900d45cc0": 1090, "0x689908ea8f70": 1090, "0x689908eaa4a0": 1090, "0x6899223538b0": 1090, "0x689922353c70": 1090, "o60384": 1090, "0x689922350730": 1090, "0x689922353310": 1090, "0x689922353760": 1090, "0x689922353190": 1090, "0x689922350d90": 1090, "0x689922353220": 1090, "p61129": 1090, "0x689922353370": 1090, "0x6899223534f0": 1090, "0x689922350c70": 1090, "0x689922351450": 1090, "0x689922353910": 1090, "0x6899223502b0": 1090, "p98182": 1090, "0x689922350280": 1090, "0x68992235": 1090, "53045": 1090, "191": 1090, "ygct": 1090, "seqlookup": 1090, "625": 1090, "annotationt": 1090, "3788067": 1090, "51636": 1090, "78": 1090, "cpad": 1090, "2308": 1090, "1358": 1090, "annotationbas": 1090, "regulator_typ": 1090, "effect_on_pathwai": 1090, "effect_on_canc": 1090, "effect_on_cancer_outcom": 1090, "pathway_categori": 1090, "get_valu": 1090, "acut": 1090, "lymphoblast": 1090, "myeloid": 1090, "aml": 1090, "basal": 1090, "bladder": 1090, "breast": 1090, "cervic": 1090, "cholangiocarcinoma": 1090, "choriocarcinoma": 1090, "chronic": 1090, "lymphocyt": 1090, "cll": 1090, "cml": 1090, "colorect": 1090, "endometri": 1090, "esophag": 1090, "ew": 1090, "sarcoma": 1090, "gallbladd": 1090, "gastric": 1090, "glioma": 1090, "hepatocellular": 1090, "hodgkin": 1090, "lymphoma": 1090, "infantil": 1090, "hemangioma": 1090, "laryng": 1090, "malign": 1090, "melanoma": 1090, "pleural": 1090, "mesothelioma": 1090, "mantl": 1090, "myeloma": 1090, "nasopharyng": 1090, "neuroblastoma": 1090, "oral": 1090, "osteosarcoma": 1090, "ovarian": 1090, "pancreat": 1090, "pituitari": 1090, "adenoma": 1090, "renal": 1090, "squamou": 1090, "synovi": 1090, "testicular": 1090, "thyroid": 1090, "a6ndv4": 1090, "o14745": 1090, "o14862": 1090, "o15169_p25054": 1090, "o94813": 1090, "o94953": 1090, "p06733": 1090, "glucos": 1090, "p11166": 1090, "p25054": 1090, "p40261": 1090, "p49327": 1090, "p54687": 1090, "pten": 1090, "p60484": 1090, "q01973": 1090, "q12888": 1090, "q13620": 1090, "q96cx2": 1090, "q99558": 1090, "mimat0000069": 1090, "mimat0000089": 1090, "mimat0000093": 1090, "mimat0000262": 1090, "mimat0000274": 1090, "mimat0000422": 1090, "mimat0000427": 1090, "mimat0000437": 1090, "mimat0000449": 1090, "mimat0000455": 1090, "mimat0000460": 1090, "mimat0000461": 1090, "mimat0000617": 1090, "mimat0003266": 1090, "mimat0003320": 1090, "o75473": 1090, "o75888": 1090, "o76041": 1090, "p13631": 1090, "p22676": 1090, "p25791": 1090, "p546": 1090, "1279": 1090, "celltypist": 1090, "927": 1090, "62": 1090, "cellcellinteract": 1090, "5544": 1090, "panglaodb": 1090, "8479": 1090, "4813": 1090, "lambert2018": 1090, "3281": 1090, "3277": 1090, "cancersea": 1090, "2515": 1090, "1992": 1090, "phobiu": 1090, "35382": 1090, "go_intercel": 1090, "48799": 1090, "18377": 1090, "18127": 1090, "15903": 1090, "surfaceom": 1090, "3558": 1090, "matrisom": 1090, "1514": 1090, "hpa_secretom": 1090, "3568": 1090, "1748": 1090, "1695": 1090, "annotati": 1090, "5842": 1090, "exempl": 1090, "mainclass": 1090, "subsubclass": 1090, "collagen": 1090, "glycoprotein": 1090, "affili": 1090, "proteoglycan": 1090, "a6nmz7": 1090, "a8tx70": 1090, "b4dz39": 1090, "homotrim": 1090, "ht_dm_cluster278": 1090, "p02452_p02462_p08572_p29400_p53420_q01955_q02388_q14031_q17rw2_q8nfw1": 1090, "trimer": 1090, "p02452_p08123": 1090, "xi": 1090, "p02458_p12107_p13942": 1090, "p02458_p20908_p25067": 1090, "p02458_p20908_p25067_p29400": 1090, "p02458_p25067_p29400": 1090, "iv": 1090, "p02462_p08572": 1090, "p05997_p12107": 1090, "p05997_p12107_p20908": 1090, "p05997_p20908": 1090, "p05997_p20908_p25940": 1090, "p12109_p12110": 1090, "3072": 1090, "membership": 1090, "signalink": [1090, 1093], "protein_sourc": 1090, "signalinkpathwai": 1090, "keggpathwai": 1090, "netpathpathwai": 1090, "complex_sourc": 1090, "28745": 1090, "6762": 1090, "all_annot": 1090, "jak": 1090, "stat": 1090, "actin": 1090, "cytoskeleton": 1090, "oxytocin": 1090, "phospholipas": 1090, "inhibitor": 1090, "resist": 1090, "papillomaviru": 1090, "infect": 1090, "carbon": 1090, "endocytosi": 1090, "cholin": 1090, "parathyroid": 1090, "synthesi": 1090, "2540": 1090, "record_id": [1090, 1093], "q16181": 1090, "sept7": 1090, "upregul": 1090, "migrat": 1090, "14396": 1090, "p30990": 1090, "nt": 1090, "2306": 1090, "14397": 1090, "2307": 1090, "14398": 1090, "erk": 1090, "14399": 1090, "14400": 1090, "14401": 1090, "convent": 1090, "tidyvers": 1090, "tidyr": [1090, 1093], "pivot_wid": 1090, "unintuit": 1090, "index_col": 1090, "axi": 1090, "set_index": 1090, "unstack": 1090, "droplevel": 1090, "reset_index": 1090, "mimat0000431": 1090, "mir": 1090, "tumor": 1090, "invas": 1090, "adam10": 1090, "notch1": [1090, 1093], "notch": 1090, "mimat0005886": 1090, "1297": 1090, "aeg1": 1090, "wnt": 1090, "q9up65": 1090, "pla2g4c": 1090, "chemotaxi": 1090, "downregul": 1090, "akt": 1090, "pi3k": 1090, "q92600": 1090, "cnot9": 1090, "2303": 1090, "epcam": 1090, "2304": 1090, "q9y6y0": 1090, "ivns1abp": 1090, "2305": 1090, "kctd12": 1090, "catenin": 1090, "goe": 1090, "anyon": 1090, "intercellannot": 1090, "310033": 1090, "43617": 1090, "annot_combined_class": 1090, "revis": 1090, "tgf": 1090, "annotdefkei": 1090, "annotationgroup": 1090, "5150": 1090, "5760": 1090, "7041": 1090, "transmembrane_predict": 1090, "6444": 1090, "transmembrane_phobiu": 1090, "almen2009": 1090, "transmembrane_sosui": 1090, "1663": 1090, "tran": 1090, "143945": 1090, "gaba_receptor": 1090, "gaba": 1090, "a8mpy1": 1090, "gabra1": 1090, "gabrb2": 1090, "gabrd": 1090, "o14764_p14867_p47870": 1090, "o14764_p28472_p48169": 1090, "o14764_p28472_q16445": 1090, "o14764_p47870_p48169": 1090, "o14764_p47870_q16445": 1090, "gabbr1": 1090, "gabbr2": 1090, "o75899_q9ubs5": 1090, "p14867": 1090, "gamma": 1090, "p14867_p18507_p28472": 1090, "gabrg2": 1090, "p14867_p18507_p47870": 1090, "p18507_p28472_p31644": 1090, "p18507_p28472_p34903": 1090, "p18507_p28472_p47869": 1090, "p18507_p28472_q16445": 1090, "p18507_q8n1c3": 1090, "register_network": 1090, "counts_df": 1090, "consensus_scor": 1090, "plasma_membrane_transmembran": 1090, "plasma_membrane_peripher": 1090, "n_uniprot": 1090, "1120": 1090, "parin_adhesion_regul": 1090, "intracellular_intercellular_rel": 1090, "1121": 1090, "plakophilin_adhesion_regul": 1090, "1122": 1090, "actin_regulation_adhesom": 1090, "1123": 1090, "adhesion_cytoskeleton_adaptor": 1090, "118": 1090, "1124": 1090, "1125": 1090, "q96jp9": 1090, "cdhr1": 1090, "q9p126": 1090, "clec1b": 1090, "q13585": 1090, "gpr50": 1090, "q8n9i0": 1090, "syt2": 1090, "o43614": 1090, "hcrtr2": 1090, "a6njy1": 1090, "slc9b1p1": 1090, "q5ri15": 1090, "cox20": 1090, "q13948": 1090, "cux1": 1090, "q8ngk4": 1090, "or52k1": 1090, "q8iys2": 1090, "kiaa2013": 1090, "neurotensin": 1090, "recom": 1090, "o95665": 1090, "ntsr2": 1090, "410": 1090, "45385": 1090, "neurotensi": 1090, "tr": 1090, "idecapepti": 1090, "disulfid": 1090, "7598": 1090, "80": 1090, "0x689946b55570": 1090, "82": 1090, "0x68991cdc9b40": 1090, "NOT": 1090, "p21333": 1090, "p80108": 1090, "p62258": 1090, "q9nrx4": 1090, "p54710": 1090, "q8ner1": 1090, "0001507": 1090, "0001527": 1090, "0003351": 1090, "0003355": 1090, "0005201": 1090, "0005577": 1090, "0005582": 1090, "0005583": 1090, "0005584": 1090, "0005585": 1090, "0005586": 1090, "0005587": 1090, "0005588": 1090, "0005590": 1090, "0005591": 1090, "0005592": 1090, "0005595": 1090, "0005596": 1090, "0005599": 1090, "0005601": 1090, "0005602": 1090, "0005604": 1090, "0005606": 1090, "0005607": 1090, "0005608": 1090, "0005609": 1090, "0005610": 1090, "0005611": 1090, "0005612": 1090, "0005614": 1090, "0005615": 1090, "0005616": 1090, "0006858": 1090, "0006859": 1090, "0006860": 1090, "0009519": 1090, "0010367": 1090, "0016914": 1090, "0016942": 1090, "0020003": 1090, "0020004": 1090, "0020005": 1090, "0020006": 1090, "0030020": 1090, "0030021": 1090, "0030023": 1090, "0030197": 1090, "0030345": 1090, "0030934": 1090, "0030935": 1090, "0030938": 1090, "0031012": 1090, "0031395": 1090, "0032311": 1090, "0032579": 1090, "0033165": 1090, "0033166": 1090, "0034358": 1090, "0034359": 1090, "0034360": 1090, "0034361": 1090, "0034362": 1090, "0034363": 1090, "0034364": 1090, "0034365": 1090, "00343": 1090, "3104": 1090, "homomultim": 1090, "update_index": 1090, "91": 1090, "p42345": [1090, 1093], "o00141_o15530_o75879_p23443_p34931_p42345_q6r327_q8n122_q9bpz7_q9bvc4_q9h672": 1090, "o00141_o15530_p07900_p23443_p31749_p31751_p42345_p78527_q05513_q05655_q6r327_q8n122_q9bpz7_q9bvc4": 1090, "o00141_o15530_p0cg47_p0cg48_p23443_p42345_q15118_q6r327_q8n122_q96br1_q9bpz7_q9bvc4": 1090, "o00141_o15530_p23443_p42345_q15118_q6r327_q8n122_q96br1_q96j02_q9bpz7_q9bvc4": 1090, "o00141_o75879_p0cg48_p23443_p34931_p42345_p62753_q6r327_q8n122_q9bpz7_q9bvc4_q9ny26": 1090, "o00141_p0cg48_p23443_p36894_p42345_p62942_p68106_q15427_q6r327_q8n122_q9bpz7_q9bvc4": 1090, "o00141_p0cg48_p23443_p42345_p46781_p62753_q6r327_q8n122_q96kq7_q9bpz7_q9bvc4_q9ny26": 1090, "o00141_p0cg48_p23443_p42345_p62753_p62942_q6r327_q8n122_q9bpz7_q9bvc4_q9ny26": 1090, "o00141_p0cg48_p23443_p42345_p62753_q15172_q6r327_q8iw41_q9bpz7_q9bvc4_q9h672": 1090, "o00141_p0cg48_p23443_p42345_p62753_q6r327_q70z35_q8n122_q8tcu6_q9bpz7": 1090, "5348": 1090, "equival": 1090, "despit": [1090, 1092], "98": 1090, "q92793": 1090, "q09472": 1090, "components_genesymbol": 1090, "nfya_nfyb_nfyc": 1090, "corum": [1090, 1093], "compleat": 1090, "complexport": 1090, "15243141": 1090, "14755292": 1090, "9372932": 1090, "4478": 1090, "hc1449": 1090, "deptor_eef1a1_mlst8_prr5_rictor": 1090, "akt1s1_deptor_mlst8_mtor_rptor": 1090, "btrc_cul1_skp1": 1090, "9990852": 1090, "227": 1090, "hc757": 1090, "crebbp_ep300": 1090, "c6": 1090, "28168": 1090, "npnt": 1090, "q5szk8_q6uxi9_q86xx4": 1090, "fras1_frem2_npnt": 1090, "28169": 1090, "nrp1_nrp2": 1090, "o14786_o60462_q9y4d7": 1090, "nrp1_nrp2_plxnd1": 1090, "28170": 1090, "nrp2_plxna2": 1090, "o60462_o75051": 1090, "28171": 1090, "nrp2_plxna4": 1090, "o60462_q9hcm2": 1090, "28172": 1090, "ptch2_smo": 1090, "q99835_q9y6c5": 1090, "good": 1090, "myannot": 1090, "complexdb": 1090, "mycomplex": 1090, "char": 1090, "xxxxx": 1090, "ten": 1090, "l0n17": 1090, "disclaim": 1090, "annoi": 1090, "101": 1090, "educ": 1090, "credit": 1090, "gnu": 1090, "104": 1090, "prioriti": 1090, "107": 1090, "console_level": 1090, "si": 1090, "download_complex": 1090, "d7b8673e83e43a01c533f9de5a2b04b9": 1090, "1046": 1090, "creation": 1090, "builtin": 1090, "shell": 1090, "dev": 1090, "108": 1090, "devnul": 1090, "notic": 1090, "109": 1090, "greet": 1090, "childoflogg": 1090, "say_someth": 1090, "_log": 1090, "anywher": 1090, "111": 1090, "_logger": 1090, "mylogg": 1090, "strai": 1090, "flood": 1090, "112": 1090, "hasn": 1090, "thoroughli": 1090, "scai": 1090, "fraunhof": 1090, "captur": 1090, "rang": 1090, "ptmaggreg": 1090, "belgraph": 1090, "bel_graph": 1090, "summar": 1090, "export_relationship": 1090, "omnipath_pathwai": 1090, "fp": 1090, "bel_str": 1090, "333": 1090, "interaction_input": 1090, "singnalink": 1090, "interaction_datafram": 1090, "protein_datafram": 1090, "load_omnipath": 1090, "entir": 1090, "worri": 1090, "network1": 1090, "entreza": 1090, "entrezb": 1090, "1950": 1090, "5290": 1090, "207": 1090, "2932": 1090, "network2": 1090, "pik3ca": 1090, "sos1": 1090, "rac1": 1090, "map3k1": 1090, "hra": 1090, "gsk3b": 1090, "iinput_format": 1090, "input1": 1090, "readset": 1090, "egf1": 1090, "input2": 1090, "egf2": 1090, "ecount": 1090, "vcount": 1090, "dgraph": 1090, "3241": 1090, "p17252": 1090, "q15139": 1090, "get_dir": 1090, "contradict": 1090, "decid": 1090, "rid": 1090, "helper": 1090, "plural": 1090, "gss": 1090, "atg16l2": 1090, "affect": 1090, "gs_stimulated_bi": 1090, "_namedvertexseq": 1090, "bit": 1090, "contraintuit": 1090, "gs_stimul": 1090, "affected_bi": 1090, "similari": 1090, "inhibited_bi": 1090, "gs_": 1090, "up_": 1090, "neighbor": 1090, "neighborhood": 1090, "rapidli": 1090, "atg3": [1090, 1093], "get_edg": 1090, "map1lc3b": [1090, 1093], "sqstm1": [1090, 1093], "refs_by_sourc": 1090, "abil": 1090, "librari": 1090, "egf_network": 1090, "png": 1090, "777777": 1090, "97be73": 1090, "ffffff": 1090, "bug": 1090, "ipython": 1090, "visibl": 1090, "inlin": 1090, "120": 1090, "imag": 1090, "click": 1091, "changelog": 1092, "improv": 1092, "remot": 1092, "partial": 1092, "pyreact": 1092, "rule": [1092, 1093], "mysql_connect": 1092, "python3": 1092, "websrvtab": 1092, "dataio": 1092, "docstr": 1092, "focus": 1092, "rewritten": 1092, "workaround": 1092, "terribl": 1092, "reflist": 1092, "becam": 1092, "paremet": 1092, "reorgan": 1092, "redesign": 1092, "yml": 1092, "neo4j": 1092, "backend": 1092, "biocyph": 1092, "dlmanag": 1092, "protocol": 1093, "wget": 1093, "whatev": 1093, "recogn": 1093, "webserv": 1093, "optimum": 1093, "qualiti": 1093, "interacion": 1093, "rodent": 1093, "omic": 1093, "arget": 1093, "source_target": 1093, "atg7": 1093, "atg4b": 1093, "map1lc3a": 1093, "map1lc3c": 1093, "q9h0r8": 1093, "gabarap": 1093, "gabarapl2": 1093, "appear": 1093, "fyn": 1093, "ens_sub": 1093, "phosphosite_noref": 1093, "hearth": 1093, "dplyr": 1093, "signalink_pathwai": 1093, "bmp7": 1093, "hpa_tissu": 1093, "funtion": 1093, "ion": 1093, "interleukin": 1093, "deliv": 1093, "exact": 1093, "atg4a": 1093, "bmp8b": 1093, "intuit": 1093, "repli": 1093}, "objects": {"": [[0, 0, 0, "-", "pypath"]], "pypath": [[1, 0, 0, "-", "core"], [53, 0, 0, "-", "data"], [54, 3, 1, "", "disclaimer"], [55, 3, 1, "", "info"], [56, 0, 0, "-", "inputs"], [856, 0, 0, "-", "internals"], [904, 0, 0, "-", "legacy"], [908, 3, 1, "", "log"], [909, 0, 0, "-", "resources"], [930, 0, 0, "-", "share"], [959, 0, 0, "-", "utils"], [1065, 0, 0, "-", "visual"]], "pypath.core": [[2, 0, 0, "-", "attrs"], [4, 0, 0, "-", "common"], [6, 0, 0, "-", "complex"], [28, 0, 0, "-", "entity"], [32, 0, 0, "-", "enz_sub"], [38, 0, 0, "-", "evidence"], [41, 0, 0, "-", "interaction"], [45, 0, 0, "-", "intercell_annot"], [47, 0, 0, "-", "network"]], "pypath.core.attrs": [[3, 1, 1, "", "AttributeHandler"]], "pypath.core.attrs.AttributeHandler": [[3, 2, 1, "", "__init__"], [3, 2, 1, "", "serialize"], [3, 2, 1, "", "update_attrs"]], "pypath.core.common": [[5, 3, 1, "", "filter_network_df"]], "pypath.core.complex": [[7, 1, 1, "", "AbstractComplexResource"], [8, 1, 1, "", "CellPhoneDB"], [9, 1, 1, "", "Cellchatdb"], [10, 1, 1, "", "Cellinker"], [11, 1, 1, "", "Compleat"], [12, 1, 1, "", "ComplexAggregator"], [13, 1, 1, "", "ComplexPortal"], [14, 1, 1, "", "Corum"], [15, 1, 1, "", "GuideToPharmacology"], [16, 1, 1, "", "Havugimana"], [17, 1, 1, "", "Hpmr"], [18, 1, 1, "", "Humap"], [19, 1, 1, "", "Humap2"], [20, 1, 1, "", "Icellnet"], [21, 1, 1, "", "Kegg"], [22, 1, 1, "", "Pdb"], [23, 1, 1, "", "Signor"], [24, 1, 1, "", "Spike"], [25, 3, 1, "", "all_complexes"], [26, 3, 1, "", "get_db"], [27, 3, 1, "", "init_db"]], "pypath.core.complex.AbstractComplexResource": [[7, 2, 1, "", "__init__"], [7, 2, 1, "", "load_data"], [7, 2, 1, "", "process"], [7, 2, 1, "", "set_method"]], "pypath.core.complex.CellPhoneDB": [[8, 2, 1, "", "__init__"], [8, 2, 1, "", "load_data"], [8, 2, 1, "", "process"], [8, 2, 1, "", "set_method"]], "pypath.core.complex.Cellchatdb": [[9, 2, 1, "", "__init__"], [9, 2, 1, "", "load_data"], [9, 2, 1, "", "process"], [9, 2, 1, "", "set_method"]], "pypath.core.complex.Cellinker": [[10, 2, 1, "", "__init__"], [10, 2, 1, "", "load_data"], [10, 2, 1, "", "process"], [10, 2, 1, "", "set_method"]], "pypath.core.complex.Compleat": [[11, 2, 1, "", "__init__"], [11, 2, 1, "", "load_data"], [11, 2, 1, "", "process"], [11, 2, 1, "", "set_method"]], "pypath.core.complex.ComplexAggregator": [[12, 2, 1, "", "__init__"], [12, 2, 1, "", "load_data"], [12, 2, 1, "", "process"], [12, 2, 1, "", "reload"], [12, 2, 1, "", "set_method"]], "pypath.core.complex.ComplexPortal": [[13, 2, 1, "", "__init__"], [13, 2, 1, "", "load_data"], [13, 2, 1, "", "process"], [13, 2, 1, "", "set_method"]], "pypath.core.complex.Corum": [[14, 2, 1, "", "__init__"], [14, 2, 1, "", "load_data"], [14, 2, 1, "", "process"], [14, 2, 1, "", "set_method"]], "pypath.core.complex.GuideToPharmacology": [[15, 2, 1, "", "__init__"], [15, 2, 1, "", "load_data"], [15, 2, 1, "", "process"], [15, 2, 1, "", "set_method"]], "pypath.core.complex.Havugimana": [[16, 2, 1, "", "__init__"], [16, 2, 1, "", "load_data"], [16, 2, 1, "", "process"], [16, 2, 1, "", "set_method"]], "pypath.core.complex.Hpmr": [[17, 2, 1, "", "__init__"], [17, 2, 1, "", "load_data"], [17, 2, 1, "", "process"], [17, 2, 1, "", "set_method"]], "pypath.core.complex.Humap": [[18, 2, 1, "", "__init__"], [18, 2, 1, "", "load_data"], [18, 2, 1, "", "process"], [18, 2, 1, "", "set_method"]], "pypath.core.complex.Humap2": [[19, 2, 1, "", "__init__"], [19, 2, 1, "", "load_data"], [19, 2, 1, "", "process"], [19, 2, 1, "", "set_method"]], "pypath.core.complex.Icellnet": [[20, 2, 1, "", "__init__"], [20, 2, 1, "", "load_data"], [20, 2, 1, "", "process"], [20, 2, 1, "", "set_method"]], "pypath.core.complex.Kegg": [[21, 2, 1, "", "__init__"], [21, 2, 1, "", "load_data"], [21, 2, 1, "", "process"], [21, 2, 1, "", "set_method"]], "pypath.core.complex.Pdb": [[22, 2, 1, "", "__init__"], [22, 2, 1, "", "load_data"], [22, 2, 1, "", "process"], [22, 2, 1, "", "set_method"]], "pypath.core.complex.Signor": [[23, 2, 1, "", "__init__"], [23, 2, 1, "", "load_data"], [23, 2, 1, "", "process"], [23, 2, 1, "", "set_method"]], "pypath.core.complex.Spike": [[24, 2, 1, "", "__init__"], [24, 2, 1, "", "load_data"], [24, 2, 1, "", "process"], [24, 2, 1, "", "set_method"]], "pypath.core.entity": [[29, 1, 1, "", "Entity"], [30, 1, 1, "", "EntityKey"], [31, 1, 1, "", "EntityList"]], "pypath.core.entity.Entity": [[29, 2, 1, "", "__init__"], [29, 2, 1, "", "count_entity_type"], [29, 2, 1, "", "filter_entity_type"], [29, 2, 1, "", "serialize"], [29, 2, 1, "", "update_attrs"]], "pypath.core.entity.EntityKey": [[30, 2, 1, "", "__init__"], [30, 2, 1, "", "count"], [30, 4, 1, "", "entity_type"], [30, 4, 1, "", "id_type"], [30, 4, 1, "", "identifier"], [30, 2, 1, "", "index"], [30, 4, 1, "", "taxon"]], "pypath.core.entity.EntityList": [[31, 2, 1, "", "__init__"]], "pypath.core.enz_sub": [[33, 1, 1, "", "EnzymeSubstrateAggregator"], [34, 1, 1, "", "EnzymeSubstrateOrthologyProcessor"], [35, 1, 1, "", "EnzymeSubstrateProcessor"], [36, 3, 1, "", "get_db"], [37, 3, 1, "", "init_db"]], "pypath.core.enz_sub.EnzymeSubstrateAggregator": [[33, 2, 1, "", "__init__"], [33, 2, 1, "", "assign_to_network"], [33, 2, 1, "", "build_list"], [33, 2, 1, "", "unique"]], "pypath.core.enz_sub.EnzymeSubstrateOrthologyProcessor": [[34, 2, 1, "", "__init__"], [34, 2, 1, "", "load_data"], [34, 2, 1, "", "ptm_orthology"], [34, 2, 1, "", "set_inputargs"], [34, 2, 1, "", "set_method"], [34, 2, 1, "", "translate"], [34, 2, 1, "", "translate_site"]], "pypath.core.enz_sub.EnzymeSubstrateProcessor": [[35, 2, 1, "", "__init__"], [35, 2, 1, "", "load_data"], [35, 2, 1, "", "set_inputargs"], [35, 2, 1, "", "set_method"]], "pypath.core.evidence": [[39, 1, 1, "", "Evidence"], [40, 1, 1, "", "Evidences"]], "pypath.core.evidence.Evidence": [[39, 2, 1, "", "__init__"], [39, 2, 1, "", "asdict"], [39, 2, 1, "", "has_interaction_type"], [39, 2, 1, "", "merge"], [39, 5, 1, "", "pubmeds"], [39, 2, 1, "", "reload"], [39, 2, 1, "", "serialize"], [39, 2, 1, "", "update_attrs"]], "pypath.core.evidence.Evidences": [[40, 2, 1, "", "__init__"], [40, 2, 1, "", "asdict"], [40, 5, 1, "", "attrs"], [40, 5, 1, "", "datasets"], [40, 2, 1, "", "has_dataset"], [40, 2, 1, "", "has_interaction_type"], [40, 2, 1, "", "items"], [40, 2, 1, "", "keys"], [40, 2, 1, "", "reload"], [40, 2, 1, "", "serialize_attrs"], [40, 5, 1, "", "simple_dict"]], "pypath.core.interaction": [[42, 1, 1, "", "Interaction"], [43, 1, 1, "", "InteractionDataFrameRecord"], [44, 1, 1, "", "InteractionKey"]], "pypath.core.interaction.Interaction": [[42, 2, 1, "", "__init__"], [42, 2, 1, "", "add_evidence"], [42, 2, 1, "", "add_sign"], [42, 2, 1, "", "asdict"], [42, 2, 1, "", "complex_identifiers_by_data_model"], [42, 2, 1, "", "complex_identifiers_by_interaction_type"], [42, 2, 1, "", "complex_identifiers_by_interaction_type_and_data_model"], [42, 2, 1, "", "complex_identifiers_by_interaction_type_and_data_model_and_resource"], [42, 2, 1, "", "complex_identifiers_by_reference"], [42, 2, 1, "", "complex_identifiers_by_resource"], [42, 2, 1, "", "complex_labels_by_data_model"], [42, 2, 1, "", "complex_labels_by_interaction_type"], [42, 2, 1, "", "complex_labels_by_interaction_type_and_data_model"], [42, 2, 1, "", "complex_labels_by_interaction_type_and_data_model_and_resource"], [42, 2, 1, "", "complex_labels_by_reference"], [42, 2, 1, "", "complex_labels_by_resource"], [42, 2, 1, "", "complexes_by_data_model"], [42, 2, 1, "", "complexes_by_interaction_type"], [42, 2, 1, "", "complexes_by_interaction_type_and_data_model"], [42, 2, 1, "", "complexes_by_interaction_type_and_data_model_and_resource"], [42, 2, 1, "", "complexes_by_reference"], [42, 2, 1, "", "complexes_by_resource"], [42, 2, 1, "", "consensus"], [42, 2, 1, "", "consensus_edges"], [42, 2, 1, "", "count_complex_identifiers"], [42, 2, 1, "", "count_complex_labels"], [42, 2, 1, "", "count_complexes"], [42, 4, 1, "", "count_data_models"], [42, 4, 1, "", "count_degrees_directed"], [42, 4, 1, "", "count_degrees_directed_in"], [42, 4, 1, "", "count_degrees_directed_out"], [42, 4, 1, "", "count_degrees_negative"], [42, 4, 1, "", "count_degrees_negative_in"], [42, 4, 1, "", "count_degrees_negative_out"], [42, 4, 1, "", "count_degrees_non_directed"], [42, 4, 1, "", "count_degrees_positive"], [42, 4, 1, "", "count_degrees_positive_in"], [42, 4, 1, "", "count_degrees_positive_out"], [42, 4, 1, "", "count_degrees_signed"], [42, 4, 1, "", "count_degrees_signed_in"], [42, 4, 1, "", "count_degrees_signed_out"], [42, 4, 1, "", "count_degrees_undirected"], [42, 2, 1, "", "count_entities"], [42, 2, 1, "", "count_identifiers"], [42, 4, 1, "", "count_interaction_types"], [42, 2, 1, "", "count_interactions"], [42, 2, 1, "", "count_interactions_0"], [42, 2, 1, "", "count_interactions_directed"], [42, 2, 1, "", "count_interactions_mutual"], [42, 2, 1, "", "count_interactions_negative"], [42, 2, 1, "", "count_interactions_non_directed"], [42, 2, 1, "", "count_interactions_positive"], [42, 2, 1, "", "count_interactions_signed"], [42, 2, 1, "", "count_interactions_undirected"], [42, 2, 1, "", "count_labels"], [42, 2, 1, "", "count_lncrna_identifiers"], [42, 2, 1, "", "count_lncrna_labels"], [42, 2, 1, "", "count_lncrnas"], [42, 2, 1, "", "count_mirna_identifiers"], [42, 2, 1, "", "count_mirna_labels"], [42, 2, 1, "", "count_mirnas"], [42, 2, 1, "", "count_protein_identifiers"], [42, 2, 1, "", "count_protein_labels"], [42, 2, 1, "", "count_proteins"], [42, 4, 1, "", "count_references"], [42, 4, 1, "", "count_resource_names"], [42, 4, 1, "", "count_resource_names_via"], [42, 4, 1, "", "count_resources"], [42, 4, 1, "", "count_resources_via"], [42, 2, 1, "", "count_small_molecule_identifiers"], [42, 2, 1, "", "count_small_molecule_labels"], [42, 2, 1, "", "count_small_molecules"], [42, 4, 1, "", "data_models_by_data_model"], [42, 4, 1, "", "data_models_by_interaction_type"], [42, 4, 1, "", "data_models_by_interaction_type_and_data_model"], [42, 4, 1, "", "data_models_by_interaction_type_and_data_model_and_resource"], [42, 4, 1, "", "data_models_by_reference"], [42, 4, 1, "", "data_models_by_resource"], [42, 4, 1, "", "datasets_by_data_model"], [42, 4, 1, "", "datasets_by_interaction_type"], [42, 4, 1, "", "datasets_by_interaction_type_and_data_model"], [42, 4, 1, "", "datasets_by_interaction_type_and_data_model_and_resource"], [42, 4, 1, "", "datasets_by_reference"], [42, 4, 1, "", "datasets_by_resource"], [42, 4, 1, "", "degrees_directed_by_data_model"], [42, 4, 1, "", "degrees_directed_by_interaction_type"], [42, 4, 1, "", "degrees_directed_by_interaction_type_and_data_model"], [42, 4, 1, "", "degrees_directed_by_interaction_type_and_data_model_and_resource"], [42, 4, 1, "", "degrees_directed_by_reference"], [42, 4, 1, "", "degrees_directed_by_resource"], [42, 4, 1, "", "degrees_directed_in_by_data_model"], [42, 4, 1, "", "degrees_directed_in_by_interaction_type"], [42, 4, 1, "", "degrees_directed_in_by_interaction_type_and_data_model"], [42, 4, 1, "", "degrees_directed_in_by_interaction_type_and_data_model_and_resource"], [42, 4, 1, "", "degrees_directed_in_by_reference"], [42, 4, 1, "", "degrees_directed_in_by_resource"], [42, 4, 1, "", "degrees_directed_out_by_data_model"], [42, 4, 1, "", "degrees_directed_out_by_interaction_type"], [42, 4, 1, "", "degrees_directed_out_by_interaction_type_and_data_model"], [42, 4, 1, "", "degrees_directed_out_by_interaction_type_and_data_model_and_resource"], [42, 4, 1, "", "degrees_directed_out_by_reference"], [42, 4, 1, "", "degrees_directed_out_by_resource"], [42, 4, 1, "", "degrees_negative_by_data_model"], [42, 4, 1, "", "degrees_negative_by_interaction_type"], [42, 4, 1, "", "degrees_negative_by_interaction_type_and_data_model"], [42, 4, 1, "", "degrees_negative_by_interaction_type_and_data_model_and_resource"], [42, 4, 1, "", "degrees_negative_by_reference"], [42, 4, 1, "", "degrees_negative_by_resource"], [42, 4, 1, "", "degrees_negative_in_by_data_model"], [42, 4, 1, "", "degrees_negative_in_by_interaction_type"], [42, 4, 1, "", "degrees_negative_in_by_interaction_type_and_data_model"], [42, 4, 1, "", "degrees_negative_in_by_interaction_type_and_data_model_and_resource"], [42, 4, 1, "", "degrees_negative_in_by_reference"], [42, 4, 1, "", "degrees_negative_in_by_resource"], [42, 4, 1, "", "degrees_negative_out_by_data_model"], [42, 4, 1, "", "degrees_negative_out_by_interaction_type"], [42, 4, 1, "", "degrees_negative_out_by_interaction_type_and_data_model"], [42, 4, 1, "", "degrees_negative_out_by_interaction_type_and_data_model_and_resource"], [42, 4, 1, "", "degrees_negative_out_by_reference"], [42, 4, 1, "", "degrees_negative_out_by_resource"], [42, 4, 1, "", "degrees_non_directed_by_data_model"], [42, 4, 1, "", "degrees_non_directed_by_interaction_type"], [42, 4, 1, "", "degrees_non_directed_by_interaction_type_and_data_model"], [42, 4, 1, "", "degrees_non_directed_by_interaction_type_and_data_model_and_resource"], [42, 4, 1, "", "degrees_non_directed_by_reference"], [42, 4, 1, "", "degrees_non_directed_by_resource"], [42, 4, 1, "", "degrees_positive_by_data_model"], [42, 4, 1, "", "degrees_positive_by_interaction_type"], [42, 4, 1, "", "degrees_positive_by_interaction_type_and_data_model"], [42, 4, 1, "", "degrees_positive_by_interaction_type_and_data_model_and_resource"], [42, 4, 1, "", "degrees_positive_by_reference"], [42, 4, 1, "", "degrees_positive_by_resource"], [42, 4, 1, "", "degrees_positive_in_by_data_model"], [42, 4, 1, "", "degrees_positive_in_by_interaction_type"], [42, 4, 1, "", "degrees_positive_in_by_interaction_type_and_data_model"], [42, 4, 1, "", "degrees_positive_in_by_interaction_type_and_data_model_and_resource"], [42, 4, 1, "", "degrees_positive_in_by_reference"], [42, 4, 1, "", "degrees_positive_in_by_resource"], [42, 4, 1, "", "degrees_positive_out_by_data_model"], [42, 4, 1, "", "degrees_positive_out_by_interaction_type"], [42, 4, 1, "", "degrees_positive_out_by_interaction_type_and_data_model"], [42, 4, 1, "", "degrees_positive_out_by_interaction_type_and_data_model_and_resource"], [42, 4, 1, "", "degrees_positive_out_by_reference"], [42, 4, 1, "", "degrees_positive_out_by_resource"], [42, 4, 1, "", "degrees_signed_by_data_model"], [42, 4, 1, "", "degrees_signed_by_interaction_type"], [42, 4, 1, "", "degrees_signed_by_interaction_type_and_data_model"], [42, 4, 1, "", "degrees_signed_by_interaction_type_and_data_model_and_resource"], [42, 4, 1, "", "degrees_signed_by_reference"], [42, 4, 1, "", "degrees_signed_by_resource"], [42, 4, 1, "", "degrees_signed_in_by_data_model"], [42, 4, 1, "", "degrees_signed_in_by_interaction_type"], [42, 4, 1, "", "degrees_signed_in_by_interaction_type_and_data_model"], [42, 4, 1, "", "degrees_signed_in_by_interaction_type_and_data_model_and_resource"], [42, 4, 1, "", "degrees_signed_in_by_reference"], [42, 4, 1, "", "degrees_signed_in_by_resource"], [42, 4, 1, "", "degrees_signed_out_by_data_model"], [42, 4, 1, "", "degrees_signed_out_by_interaction_type"], [42, 4, 1, "", "degrees_signed_out_by_interaction_type_and_data_model"], [42, 4, 1, "", "degrees_signed_out_by_interaction_type_and_data_model_and_resource"], [42, 4, 1, "", "degrees_signed_out_by_reference"], [42, 4, 1, "", "degrees_signed_out_by_resource"], [42, 4, 1, "", "degrees_undirected_by_data_model"], [42, 4, 1, "", "degrees_undirected_by_interaction_type"], [42, 4, 1, "", "degrees_undirected_by_interaction_type_and_data_model"], [42, 4, 1, "", "degrees_undirected_by_interaction_type_and_data_model_and_resource"], [42, 4, 1, "", "degrees_undirected_by_reference"], [42, 4, 1, "", "degrees_undirected_by_resource"], [42, 2, 1, "", "direction_key"], [42, 2, 1, "", "dorothea_level"], [42, 2, 1, "", "dorothea_levels"], [42, 2, 1, "", "entities_by_data_model"], [42, 2, 1, "", "entities_by_interaction_type"], [42, 2, 1, "", "entities_by_interaction_type_and_data_model"], [42, 2, 1, "", "entities_by_interaction_type_and_data_model_and_resource"], [42, 2, 1, "", "entities_by_reference"], [42, 2, 1, "", "entities_by_resource"], [42, 2, 1, "", "evaluate_evidences"], [42, 2, 1, "", "generate_df_records"], [42, 2, 1, "", "get_attr"], [42, 2, 1, "", "get_complex_identifiers"], [42, 2, 1, "", "get_complex_labels"], [42, 2, 1, "", "get_complexes"], [42, 4, 1, "", "get_data_models"], [42, 4, 1, "", "get_datasets"], [42, 2, 1, "", "get_degrees"], [42, 4, 1, "", "get_degrees_directed"], [42, 4, 1, "", "get_degrees_directed_in"], [42, 4, 1, "", "get_degrees_directed_out"], [42, 4, 1, "", "get_degrees_negative"], [42, 4, 1, "", "get_degrees_negative_in"], [42, 4, 1, "", "get_degrees_negative_out"], [42, 4, 1, "", "get_degrees_non_directed"], [42, 4, 1, "", "get_degrees_positive"], [42, 4, 1, "", "get_degrees_positive_in"], [42, 4, 1, "", "get_degrees_positive_out"], [42, 4, 1, "", "get_degrees_signed"], [42, 4, 1, "", "get_degrees_signed_in"], [42, 4, 1, "", "get_degrees_signed_out"], [42, 4, 1, "", "get_degrees_undirected"], [42, 2, 1, "", "get_direction"], [42, 2, 1, "", "get_directions"], [42, 2, 1, "", "get_entities"], [42, 2, 1, "", "get_identifiers"], [42, 4, 1, "", "get_interaction_types"], [42, 2, 1, "", "get_interactions"], [42, 2, 1, "", "get_interactions_0"], [42, 2, 1, "", "get_interactions_directed"], [42, 2, 1, "", "get_interactions_mutual"], [42, 2, 1, "", "get_interactions_negative"], [42, 2, 1, "", "get_interactions_non_directed"], [42, 2, 1, "", "get_interactions_non_directed_0"], [42, 2, 1, "", "get_interactions_positive"], [42, 2, 1, "", "get_interactions_signed"], [42, 2, 1, "", "get_interactions_undirected"], [42, 2, 1, "", "get_interactions_undirected_0"], [42, 2, 1, "", "get_labels"], [42, 2, 1, "", "get_lncrna_identifiers"], [42, 2, 1, "", "get_lncrna_labels"], [42, 2, 1, "", "get_lncrnas"], [42, 2, 1, "", "get_mirna_identifiers"], [42, 2, 1, "", "get_mirna_labels"], [42, 2, 1, "", "get_mirnas"], [42, 2, 1, "", "get_protein_identifiers"], [42, 2, 1, "", "get_protein_labels"], [42, 2, 1, "", "get_proteins"], [42, 4, 1, "", "get_references"], [42, 4, 1, "", "get_resource_names"], [42, 4, 1, "", "get_resource_names_via"], [42, 4, 1, "", "get_resources"], [42, 4, 1, "", "get_resources_via"], [42, 2, 1, "", "get_sign"], [42, 2, 1, "", "get_small_molecule_identifiers"], [42, 2, 1, "", "get_small_molecule_labels"], [42, 2, 1, "", "get_small_molecules"], [42, 2, 1, "", "has_sign"], [42, 2, 1, "", "identifiers_by_data_model"], [42, 2, 1, "", "identifiers_by_interaction_type"], [42, 2, 1, "", "identifiers_by_interaction_type_and_data_model"], [42, 2, 1, "", "identifiers_by_interaction_type_and_data_model_and_resource"], [42, 2, 1, "", "identifiers_by_reference"], [42, 2, 1, "", "identifiers_by_resource"], [42, 4, 1, "", "interaction_types_by_data_model"], [42, 4, 1, "", "interaction_types_by_interaction_type"], [42, 4, 1, "", "interaction_types_by_interaction_type_and_data_model"], [42, 4, 1, "", "interaction_types_by_interaction_type_and_data_model_and_resource"], [42, 4, 1, "", "interaction_types_by_reference"], [42, 4, 1, "", "interaction_types_by_resource"], [42, 2, 1, "", "interactions_0_by_data_model"], [42, 2, 1, "", "interactions_0_by_interaction_type"], [42, 2, 1, "", "interactions_0_by_interaction_type_and_data_model"], [42, 2, 1, "", "interactions_0_by_interaction_type_and_data_model_and_resource"], [42, 2, 1, "", "interactions_0_by_reference"], [42, 2, 1, "", "interactions_0_by_resource"], [42, 2, 1, "", "interactions_by_data_model"], [42, 2, 1, "", "interactions_by_interaction_type"], [42, 2, 1, "", "interactions_by_interaction_type_and_data_model"], [42, 2, 1, "", "interactions_by_interaction_type_and_data_model_and_resource"], [42, 2, 1, "", "interactions_by_reference"], [42, 2, 1, "", "interactions_by_resource"], [42, 2, 1, "", "interactions_directed_by_data_model"], [42, 2, 1, "", "interactions_directed_by_interaction_type"], [42, 2, 1, "", "interactions_directed_by_interaction_type_and_data_model"], [42, 2, 1, "", "interactions_directed_by_interaction_type_and_data_model_and_resource"], [42, 2, 1, "", "interactions_directed_by_reference"], [42, 2, 1, "", "interactions_directed_by_resource"], [42, 2, 1, "", "interactions_mutual_by_data_model"], [42, 2, 1, "", "interactions_mutual_by_interaction_type"], [42, 2, 1, "", "interactions_mutual_by_interaction_type_and_data_model"], [42, 2, 1, "", "interactions_mutual_by_interaction_type_and_data_model_and_resource"], [42, 2, 1, "", "interactions_mutual_by_reference"], [42, 2, 1, "", "interactions_mutual_by_resource"], [42, 2, 1, "", "interactions_negative_by_data_model"], [42, 2, 1, "", "interactions_negative_by_interaction_type"], [42, 2, 1, "", "interactions_negative_by_interaction_type_and_data_model"], [42, 2, 1, "", "interactions_negative_by_interaction_type_and_data_model_and_resource"], [42, 2, 1, "", "interactions_negative_by_reference"], [42, 2, 1, "", "interactions_negative_by_resource"], [42, 2, 1, "", "interactions_non_directed_0_by_data_model"], [42, 2, 1, "", "interactions_non_directed_0_by_interaction_type"], [42, 2, 1, "", "interactions_non_directed_0_by_interaction_type_and_data_model"], [42, 2, 1, "", "interactions_non_directed_0_by_interaction_type_and_data_model_and_resource"], [42, 2, 1, "", "interactions_non_directed_0_by_reference"], [42, 2, 1, "", "interactions_non_directed_0_by_resource"], [42, 2, 1, "", "interactions_non_directed_by_data_model"], [42, 2, 1, "", "interactions_non_directed_by_interaction_type"], [42, 2, 1, "", "interactions_non_directed_by_interaction_type_and_data_model"], [42, 2, 1, "", "interactions_non_directed_by_interaction_type_and_data_model_and_resource"], [42, 2, 1, "", "interactions_non_directed_by_reference"], [42, 2, 1, "", "interactions_non_directed_by_resource"], [42, 2, 1, "", "interactions_positive_by_data_model"], [42, 2, 1, "", "interactions_positive_by_interaction_type"], [42, 2, 1, "", "interactions_positive_by_interaction_type_and_data_model"], [42, 2, 1, "", "interactions_positive_by_interaction_type_and_data_model_and_resource"], [42, 2, 1, "", "interactions_positive_by_reference"], [42, 2, 1, "", "interactions_positive_by_resource"], [42, 2, 1, "", "interactions_signed_by_data_model"], [42, 2, 1, "", "interactions_signed_by_interaction_type"], [42, 2, 1, "", "interactions_signed_by_interaction_type_and_data_model"], [42, 2, 1, "", "interactions_signed_by_interaction_type_and_data_model_and_resource"], [42, 2, 1, "", "interactions_signed_by_reference"], [42, 2, 1, "", "interactions_signed_by_resource"], [42, 2, 1, "", "interactions_undirected_0_by_data_model"], [42, 2, 1, "", "interactions_undirected_0_by_interaction_type"], [42, 2, 1, "", "interactions_undirected_0_by_interaction_type_and_data_model"], [42, 2, 1, "", "interactions_undirected_0_by_interaction_type_and_data_model_and_resource"], [42, 2, 1, "", "interactions_undirected_0_by_reference"], [42, 2, 1, "", "interactions_undirected_0_by_resource"], [42, 2, 1, "", "interactions_undirected_by_data_model"], [42, 2, 1, "", "interactions_undirected_by_interaction_type"], [42, 2, 1, "", "interactions_undirected_by_interaction_type_and_data_model"], [42, 2, 1, "", "interactions_undirected_by_interaction_type_and_data_model_and_resource"], [42, 2, 1, "", "interactions_undirected_by_reference"], [42, 2, 1, "", "interactions_undirected_by_resource"], [42, 2, 1, "", "is_directed"], [42, 2, 1, "", "is_directed_by_resources"], [42, 2, 1, "", "is_inhibition"], [42, 2, 1, "", "is_loop"], [42, 2, 1, "", "is_mutual"], [42, 2, 1, "", "is_mutual_by_resources"], [42, 2, 1, "", "is_stimulation"], [42, 2, 1, "", "iter_evidences"], [42, 2, 1, "", "iter_match_evidences"], [42, 2, 1, "", "labels_by_data_model"], [42, 2, 1, "", "labels_by_interaction_type"], [42, 2, 1, "", "labels_by_interaction_type_and_data_model"], [42, 2, 1, "", "labels_by_interaction_type_and_data_model_and_resource"], [42, 2, 1, "", "labels_by_reference"], [42, 2, 1, "", "labels_by_resource"], [42, 2, 1, "", "lncrna_identifiers_by_data_model"], [42, 2, 1, "", "lncrna_identifiers_by_interaction_type"], [42, 2, 1, "", "lncrna_identifiers_by_interaction_type_and_data_model"], [42, 2, 1, "", "lncrna_identifiers_by_interaction_type_and_data_model_and_resource"], [42, 2, 1, "", "lncrna_identifiers_by_reference"], [42, 2, 1, "", "lncrna_identifiers_by_resource"], [42, 2, 1, "", "lncrna_labels_by_data_model"], [42, 2, 1, "", "lncrna_labels_by_interaction_type"], [42, 2, 1, "", "lncrna_labels_by_interaction_type_and_data_model"], [42, 2, 1, "", "lncrna_labels_by_interaction_type_and_data_model_and_resource"], [42, 2, 1, "", "lncrna_labels_by_reference"], [42, 2, 1, "", "lncrna_labels_by_resource"], [42, 2, 1, "", "lncrnas_by_data_model"], [42, 2, 1, "", "lncrnas_by_interaction_type"], [42, 2, 1, "", "lncrnas_by_interaction_type_and_data_model"], [42, 2, 1, "", "lncrnas_by_interaction_type_and_data_model_and_resource"], [42, 2, 1, "", "lncrnas_by_reference"], [42, 2, 1, "", "lncrnas_by_resource"], [42, 2, 1, "", "majority_dir"], [42, 2, 1, "", "majority_sign"], [42, 2, 1, "", "merge"], [42, 2, 1, "", "mirna_identifiers_by_data_model"], [42, 2, 1, "", "mirna_identifiers_by_interaction_type"], [42, 2, 1, "", "mirna_identifiers_by_interaction_type_and_data_model"], [42, 2, 1, "", "mirna_identifiers_by_interaction_type_and_data_model_and_resource"], [42, 2, 1, "", "mirna_identifiers_by_reference"], [42, 2, 1, "", "mirna_identifiers_by_resource"], [42, 2, 1, "", "mirna_labels_by_data_model"], [42, 2, 1, "", "mirna_labels_by_interaction_type"], [42, 2, 1, "", "mirna_labels_by_interaction_type_and_data_model"], [42, 2, 1, "", "mirna_labels_by_interaction_type_and_data_model_and_resource"], [42, 2, 1, "", "mirna_labels_by_reference"], [42, 2, 1, "", "mirna_labels_by_resource"], [42, 2, 1, "", "mirnas_by_data_model"], [42, 2, 1, "", "mirnas_by_interaction_type"], [42, 2, 1, "", "mirnas_by_interaction_type_and_data_model"], [42, 2, 1, "", "mirnas_by_interaction_type_and_data_model_and_resource"], [42, 2, 1, "", "mirnas_by_reference"], [42, 2, 1, "", "mirnas_by_resource"], [42, 2, 1, "", "negative_a_b"], [42, 2, 1, "", "negative_b_a"], [42, 2, 1, "", "negative_resources_a_b"], [42, 2, 1, "", "negative_resources_b_a"], [42, 2, 1, "", "negative_reverse"], [42, 2, 1, "", "negative_straight"], [42, 2, 1, "", "positive_a_b"], [42, 2, 1, "", "positive_b_a"], [42, 2, 1, "", "positive_resources_a_b"], [42, 2, 1, "", "positive_resources_b_a"], [42, 2, 1, "", "positive_reverse"], [42, 2, 1, "", "positive_straight"], [42, 2, 1, "", "protein_identifiers_by_data_model"], [42, 2, 1, "", "protein_identifiers_by_interaction_type"], [42, 2, 1, "", "protein_identifiers_by_interaction_type_and_data_model"], [42, 2, 1, "", "protein_identifiers_by_interaction_type_and_data_model_and_resource"], [42, 2, 1, "", "protein_identifiers_by_reference"], [42, 2, 1, "", "protein_identifiers_by_resource"], [42, 2, 1, "", "protein_labels_by_data_model"], [42, 2, 1, "", "protein_labels_by_interaction_type"], [42, 2, 1, "", "protein_labels_by_interaction_type_and_data_model"], [42, 2, 1, "", "protein_labels_by_interaction_type_and_data_model_and_resource"], [42, 2, 1, "", "protein_labels_by_reference"], [42, 2, 1, "", "protein_labels_by_resource"], [42, 2, 1, "", "proteins_by_data_model"], [42, 2, 1, "", "proteins_by_interaction_type"], [42, 2, 1, "", "proteins_by_interaction_type_and_data_model"], [42, 2, 1, "", "proteins_by_interaction_type_and_data_model_and_resource"], [42, 2, 1, "", "proteins_by_reference"], [42, 2, 1, "", "proteins_by_resource"], [42, 4, 1, "", "references_by_data_model"], [42, 4, 1, "", "references_by_interaction_type"], [42, 4, 1, "", "references_by_interaction_type_and_data_model"], [42, 4, 1, "", "references_by_interaction_type_and_data_model_and_resource"], [42, 4, 1, "", "references_by_reference"], [42, 4, 1, "", "references_by_resource"], [42, 2, 1, "", "reload"], [42, 4, 1, "", "resource_names_by_data_model"], [42, 4, 1, "", "resource_names_by_interaction_type"], [42, 4, 1, "", "resource_names_by_interaction_type_and_data_model"], [42, 4, 1, "", "resource_names_by_interaction_type_and_data_model_and_resource"], [42, 4, 1, "", "resource_names_by_reference"], [42, 4, 1, "", "resource_names_by_resource"], [42, 4, 1, "", "resource_names_via_by_data_model"], [42, 4, 1, "", "resource_names_via_by_interaction_type"], [42, 4, 1, "", "resource_names_via_by_interaction_type_and_data_model"], [42, 4, 1, "", "resource_names_via_by_interaction_type_and_data_model_and_resource"], [42, 4, 1, "", "resource_names_via_by_reference"], [42, 4, 1, "", "resource_names_via_by_resource"], [42, 2, 1, "", "resources_a_b"], [42, 2, 1, "", "resources_b_a"], [42, 4, 1, "", "resources_by_data_model"], [42, 4, 1, "", "resources_by_interaction_type"], [42, 4, 1, "", "resources_by_interaction_type_and_data_model"], [42, 4, 1, "", "resources_by_interaction_type_and_data_model_and_resource"], [42, 4, 1, "", "resources_by_reference"], [42, 4, 1, "", "resources_by_resource"], [42, 2, 1, "", "resources_undirected"], [42, 4, 1, "", "resources_via_by_data_model"], [42, 4, 1, "", "resources_via_by_interaction_type"], [42, 4, 1, "", "resources_via_by_interaction_type_and_data_model"], [42, 4, 1, "", "resources_via_by_interaction_type_and_data_model_and_resource"], [42, 4, 1, "", "resources_via_by_reference"], [42, 4, 1, "", "resources_via_by_resource"], [42, 2, 1, "", "serialize"], [42, 2, 1, "", "serialize_attrs"], [42, 2, 1, "", "serialize_evidences"], [42, 2, 1, "", "small_molecule_identifiers_by_data_model"], [42, 2, 1, "", "small_molecule_identifiers_by_interaction_type"], [42, 2, 1, "", "small_molecule_identifiers_by_interaction_type_and_data_model"], [42, 2, 1, "", "small_molecule_identifiers_by_interaction_type_and_data_model_and_resource"], [42, 2, 1, "", "small_molecule_identifiers_by_reference"], [42, 2, 1, "", "small_molecule_identifiers_by_resource"], [42, 2, 1, "", "small_molecule_labels_by_data_model"], [42, 2, 1, "", "small_molecule_labels_by_interaction_type"], [42, 2, 1, "", "small_molecule_labels_by_interaction_type_and_data_model"], [42, 2, 1, "", "small_molecule_labels_by_interaction_type_and_data_model_and_resource"], [42, 2, 1, "", "small_molecule_labels_by_reference"], [42, 2, 1, "", "small_molecule_labels_by_resource"], [42, 2, 1, "", "small_molecules_by_data_model"], [42, 2, 1, "", "small_molecules_by_interaction_type"], [42, 2, 1, "", "small_molecules_by_interaction_type_and_data_model"], [42, 2, 1, "", "small_molecules_by_interaction_type_and_data_model_and_resource"], [42, 2, 1, "", "small_molecules_by_reference"], [42, 2, 1, "", "small_molecules_by_resource"], [42, 2, 1, "", "source"], [42, 2, 1, "", "sources_reverse"], [42, 2, 1, "", "sources_straight"], [42, 2, 1, "", "sources_undirected"], [42, 2, 1, "", "src"], [42, 2, 1, "", "src_by_resource"], [42, 2, 1, "", "target"], [42, 2, 1, "", "tgt"], [42, 2, 1, "", "tgt_by_resource"], [42, 2, 1, "", "translate"], [42, 2, 1, "", "unset_dir"], [42, 2, 1, "", "unset_direction"], [42, 2, 1, "", "unset_interaction_type"], [42, 2, 1, "", "unset_sign"], [42, 2, 1, "", "update_attrs"], [42, 2, 1, "", "which_directions"], [42, 2, 1, "", "which_dirs"], [42, 2, 1, "", "which_signs"]], "pypath.core.interaction.InteractionDataFrameRecord": [[43, 2, 1, "", "__init__"], [43, 2, 1, "", "count"], [43, 4, 1, "", "directed"], [43, 4, 1, "", "dmodel"], [43, 4, 1, "", "effect"], [43, 4, 1, "", "id_a"], [43, 4, 1, "", "id_b"], [43, 2, 1, "", "index"], [43, 4, 1, "", "references"], [43, 4, 1, "", "sources"], [43, 4, 1, "", "type"], [43, 4, 1, "", "type_a"], [43, 4, 1, "", "type_b"]], "pypath.core.interaction.InteractionKey": [[44, 2, 1, "", "__init__"], [44, 2, 1, "", "count"], [44, 4, 1, "", "entity_a"], [44, 4, 1, "", "entity_b"], [44, 2, 1, "", "index"]], "pypath.core.intercell_annot": [[46, 6, 1, "", "excludes"]], "pypath.core.network": [[48, 1, 1, "", "Network"], [49, 1, 1, "", "NetworkEntityCollection"], [50, 1, 1, "", "NetworkStatsRecord"], [51, 3, 1, "", "get_db"], [52, 3, 1, "", "init_db"]], "pypath.core.network.Network": [[48, 2, 1, "", "__init__"], [48, 4, 1, "", "activated_by"], [48, 4, 1, "", "activates"], [48, 2, 1, "", "add_interaction"], [48, 2, 1, "", "add_node"], [48, 4, 1, "", "collect_complex_identifiers"], [48, 4, 1, "", "collect_complex_labels"], [48, 4, 1, "", "collect_complexes"], [48, 4, 1, "", "collect_curation_effort"], [48, 4, 1, "", "collect_data_models"], [48, 4, 1, "", "collect_datasets"], [48, 4, 1, "", "collect_degrees_directed"], [48, 4, 1, "", "collect_degrees_directed_in"], [48, 4, 1, "", "collect_degrees_directed_out"], [48, 4, 1, "", "collect_degrees_negative"], [48, 4, 1, "", "collect_degrees_negative_in"], [48, 4, 1, "", "collect_degrees_negative_out"], [48, 4, 1, "", "collect_degrees_non_directed"], [48, 4, 1, "", "collect_degrees_positive"], [48, 4, 1, "", "collect_degrees_positive_in"], [48, 4, 1, "", "collect_degrees_positive_out"], [48, 4, 1, "", "collect_degrees_signed"], [48, 4, 1, "", "collect_degrees_signed_in"], [48, 4, 1, "", "collect_degrees_signed_out"], [48, 4, 1, "", "collect_degrees_undirected"], [48, 4, 1, "", "collect_entities"], [48, 4, 1, "", "collect_evidences"], [48, 4, 1, "", "collect_identifiers"], [48, 4, 1, "", "collect_interaction_types"], [48, 4, 1, "", "collect_interactions"], [48, 4, 1, "", "collect_interactions_0"], [48, 4, 1, "", "collect_interactions_directed"], [48, 4, 1, "", "collect_interactions_mutual"], [48, 4, 1, "", "collect_interactions_negative"], [48, 4, 1, "", "collect_interactions_non_directed"], [48, 4, 1, "", "collect_interactions_non_directed_0"], [48, 4, 1, "", "collect_interactions_positive"], [48, 4, 1, "", "collect_interactions_signed"], [48, 4, 1, "", "collect_interactions_undirected"], [48, 4, 1, "", "collect_interactions_undirected_0"], [48, 4, 1, "", "collect_labels"], [48, 4, 1, "", "collect_lncrna_identifiers"], [48, 4, 1, "", "collect_lncrna_labels"], [48, 4, 1, "", "collect_lncrnas"], [48, 4, 1, "", "collect_mirna_identifiers"], [48, 4, 1, "", "collect_mirna_labels"], [48, 4, 1, "", "collect_mirnas"], [48, 4, 1, "", "collect_protein_identifiers"], [48, 4, 1, "", "collect_protein_labels"], [48, 4, 1, "", "collect_proteins"], [48, 4, 1, "", "collect_references"], [48, 4, 1, "", "collect_resource_names"], [48, 4, 1, "", "collect_resource_names_via"], [48, 4, 1, "", "collect_resources"], [48, 4, 1, "", "collect_resources_via"], [48, 4, 1, "", "collect_small_molecule_identifiers"], [48, 4, 1, "", "collect_small_molecule_labels"], [48, 4, 1, "", "collect_small_molecules"], [48, 2, 1, "", "collectri"], [48, 4, 1, "", "complex_identifiers_by_data_model"], [48, 4, 1, "", "complex_identifiers_by_interaction_type"], [48, 4, 1, "", "complex_identifiers_by_interaction_type_and_data_model"], [48, 4, 1, "", "complex_identifiers_by_interaction_type_and_data_model_and_resource"], [48, 4, 1, "", "complex_identifiers_by_reference"], [48, 4, 1, "", "complex_identifiers_by_resource"], [48, 4, 1, "", "complex_labels_by_data_model"], [48, 4, 1, "", "complex_labels_by_interaction_type"], [48, 4, 1, "", "complex_labels_by_interaction_type_and_data_model"], [48, 4, 1, "", "complex_labels_by_interaction_type_and_data_model_and_resource"], [48, 4, 1, "", "complex_labels_by_reference"], [48, 4, 1, "", "complex_labels_by_resource"], [48, 4, 1, "", "complexes_by_data_model"], [48, 4, 1, "", "complexes_by_interaction_type"], [48, 4, 1, "", "complexes_by_interaction_type_and_data_model"], [48, 4, 1, "", "complexes_by_interaction_type_and_data_model_and_resource"], [48, 4, 1, "", "complexes_by_reference"], [48, 4, 1, "", "complexes_by_resource"], [48, 4, 1, "", "count_activated_by"], [48, 4, 1, "", "count_activates"], [48, 4, 1, "", "count_complex_identifiers"], [48, 4, 1, "", "count_complex_identifiers_by_data_model"], [48, 4, 1, "", "count_complex_identifiers_by_interaction_type"], [48, 4, 1, "", "count_complex_identifiers_by_interaction_type_and_data_model"], [48, 4, 1, "", "count_complex_identifiers_by_interaction_type_and_data_model_and_resource"], [48, 4, 1, "", "count_complex_identifiers_by_reference"], [48, 4, 1, "", "count_complex_identifiers_by_resource"], [48, 4, 1, "", "count_complex_labels"], [48, 4, 1, "", "count_complex_labels_by_data_model"], [48, 4, 1, "", "count_complex_labels_by_interaction_type"], [48, 4, 1, "", "count_complex_labels_by_interaction_type_and_data_model"], [48, 4, 1, "", "count_complex_labels_by_interaction_type_and_data_model_and_resource"], [48, 4, 1, "", "count_complex_labels_by_reference"], [48, 4, 1, "", "count_complex_labels_by_resource"], [48, 4, 1, "", "count_complexes"], [48, 4, 1, "", "count_complexes_by_data_model"], [48, 4, 1, "", "count_complexes_by_interaction_type"], [48, 4, 1, "", "count_complexes_by_interaction_type_and_data_model"], [48, 4, 1, "", "count_complexes_by_interaction_type_and_data_model_and_resource"], [48, 4, 1, "", "count_complexes_by_reference"], [48, 4, 1, "", "count_complexes_by_resource"], [48, 4, 1, "", "count_curation_effort"], [48, 4, 1, "", "count_curation_effort_by_data_model"], [48, 4, 1, "", "count_curation_effort_by_interaction_type"], [48, 4, 1, "", "count_curation_effort_by_interaction_type_and_data_model"], [48, 4, 1, "", "count_curation_effort_by_interaction_type_and_data_model_and_resource"], [48, 4, 1, "", "count_curation_effort_by_reference"], [48, 4, 1, "", "count_curation_effort_by_resource"], [48, 4, 1, "", "count_data_models"], [48, 4, 1, "", "count_data_models_by_data_model"], [48, 4, 1, "", "count_data_models_by_interaction_type"], [48, 4, 1, "", "count_data_models_by_interaction_type_and_data_model"], [48, 4, 1, "", "count_data_models_by_interaction_type_and_data_model_and_resource"], [48, 4, 1, "", "count_data_models_by_reference"], [48, 4, 1, "", "count_data_models_by_resource"], [48, 4, 1, "", "count_datasets"], [48, 4, 1, "", "count_datasets_by_data_model"], [48, 4, 1, "", "count_datasets_by_interaction_type"], [48, 4, 1, "", "count_datasets_by_interaction_type_and_data_model"], [48, 4, 1, "", "count_datasets_by_interaction_type_and_data_model_and_resource"], [48, 4, 1, "", "count_datasets_by_reference"], [48, 4, 1, "", "count_datasets_by_resource"], [48, 4, 1, "", "count_degrees_directed"], [48, 4, 1, "", "count_degrees_directed_by_data_model"], [48, 4, 1, "", "count_degrees_directed_by_interaction_type"], [48, 4, 1, "", "count_degrees_directed_by_interaction_type_and_data_model"], [48, 4, 1, "", "count_degrees_directed_by_interaction_type_and_data_model_and_resource"], [48, 4, 1, "", "count_degrees_directed_by_reference"], [48, 4, 1, "", "count_degrees_directed_by_resource"], [48, 4, 1, "", "count_degrees_directed_in"], [48, 4, 1, "", "count_degrees_directed_in_by_data_model"], [48, 4, 1, "", "count_degrees_directed_in_by_interaction_type"], [48, 4, 1, "", "count_degrees_directed_in_by_interaction_type_and_data_model"], [48, 4, 1, "", "count_degrees_directed_in_by_interaction_type_and_data_model_and_resource"], [48, 4, 1, "", "count_degrees_directed_in_by_reference"], [48, 4, 1, "", "count_degrees_directed_in_by_resource"], [48, 4, 1, "", "count_degrees_directed_out"], [48, 4, 1, "", "count_degrees_directed_out_by_data_model"], [48, 4, 1, "", "count_degrees_directed_out_by_interaction_type"], [48, 4, 1, "", "count_degrees_directed_out_by_interaction_type_and_data_model"], [48, 4, 1, "", "count_degrees_directed_out_by_interaction_type_and_data_model_and_resource"], [48, 4, 1, "", "count_degrees_directed_out_by_reference"], [48, 4, 1, "", "count_degrees_directed_out_by_resource"], [48, 4, 1, "", "count_degrees_negative"], [48, 4, 1, "", "count_degrees_negative_by_data_model"], [48, 4, 1, "", "count_degrees_negative_by_interaction_type"], [48, 4, 1, "", "count_degrees_negative_by_interaction_type_and_data_model"], [48, 4, 1, "", "count_degrees_negative_by_interaction_type_and_data_model_and_resource"], [48, 4, 1, "", "count_degrees_negative_by_reference"], [48, 4, 1, "", "count_degrees_negative_by_resource"], [48, 4, 1, "", "count_degrees_negative_in"], [48, 4, 1, "", "count_degrees_negative_in_by_data_model"], [48, 4, 1, "", "count_degrees_negative_in_by_interaction_type"], [48, 4, 1, "", "count_degrees_negative_in_by_interaction_type_and_data_model"], [48, 4, 1, "", "count_degrees_negative_in_by_interaction_type_and_data_model_and_resource"], [48, 4, 1, "", "count_degrees_negative_in_by_reference"], [48, 4, 1, "", "count_degrees_negative_in_by_resource"], [48, 4, 1, "", "count_degrees_negative_out"], [48, 4, 1, "", "count_degrees_negative_out_by_data_model"], [48, 4, 1, "", "count_degrees_negative_out_by_interaction_type"], [48, 4, 1, "", "count_degrees_negative_out_by_interaction_type_and_data_model"], [48, 4, 1, "", "count_degrees_negative_out_by_interaction_type_and_data_model_and_resource"], [48, 4, 1, "", "count_degrees_negative_out_by_reference"], [48, 4, 1, "", "count_degrees_negative_out_by_resource"], [48, 4, 1, "", "count_degrees_non_directed"], [48, 4, 1, "", "count_degrees_non_directed_by_data_model"], [48, 4, 1, "", "count_degrees_non_directed_by_interaction_type"], [48, 4, 1, "", "count_degrees_non_directed_by_interaction_type_and_data_model"], [48, 4, 1, "", "count_degrees_non_directed_by_interaction_type_and_data_model_and_resource"], [48, 4, 1, "", "count_degrees_non_directed_by_reference"], [48, 4, 1, "", "count_degrees_non_directed_by_resource"], [48, 4, 1, "", "count_degrees_positive"], [48, 4, 1, "", "count_degrees_positive_by_data_model"], [48, 4, 1, "", "count_degrees_positive_by_interaction_type"], [48, 4, 1, "", "count_degrees_positive_by_interaction_type_and_data_model"], [48, 4, 1, "", "count_degrees_positive_by_interaction_type_and_data_model_and_resource"], [48, 4, 1, "", "count_degrees_positive_by_reference"], [48, 4, 1, "", "count_degrees_positive_by_resource"], [48, 4, 1, "", "count_degrees_positive_in"], [48, 4, 1, "", "count_degrees_positive_in_by_data_model"], [48, 4, 1, "", "count_degrees_positive_in_by_interaction_type"], [48, 4, 1, "", "count_degrees_positive_in_by_interaction_type_and_data_model"], [48, 4, 1, "", "count_degrees_positive_in_by_interaction_type_and_data_model_and_resource"], [48, 4, 1, "", "count_degrees_positive_in_by_reference"], [48, 4, 1, "", "count_degrees_positive_in_by_resource"], [48, 4, 1, "", "count_degrees_positive_out"], [48, 4, 1, "", "count_degrees_positive_out_by_data_model"], [48, 4, 1, "", "count_degrees_positive_out_by_interaction_type"], [48, 4, 1, "", "count_degrees_positive_out_by_interaction_type_and_data_model"], [48, 4, 1, "", "count_degrees_positive_out_by_interaction_type_and_data_model_and_resource"], [48, 4, 1, "", "count_degrees_positive_out_by_reference"], [48, 4, 1, "", "count_degrees_positive_out_by_resource"], [48, 4, 1, "", "count_degrees_signed"], [48, 4, 1, "", "count_degrees_signed_by_data_model"], [48, 4, 1, "", "count_degrees_signed_by_interaction_type"], [48, 4, 1, "", "count_degrees_signed_by_interaction_type_and_data_model"], [48, 4, 1, "", "count_degrees_signed_by_interaction_type_and_data_model_and_resource"], [48, 4, 1, "", "count_degrees_signed_by_reference"], [48, 4, 1, "", "count_degrees_signed_by_resource"], [48, 4, 1, "", "count_degrees_signed_in"], [48, 4, 1, "", "count_degrees_signed_in_by_data_model"], [48, 4, 1, "", "count_degrees_signed_in_by_interaction_type"], [48, 4, 1, "", "count_degrees_signed_in_by_interaction_type_and_data_model"], [48, 4, 1, "", "count_degrees_signed_in_by_interaction_type_and_data_model_and_resource"], [48, 4, 1, "", "count_degrees_signed_in_by_reference"], [48, 4, 1, "", "count_degrees_signed_in_by_resource"], [48, 4, 1, "", "count_degrees_signed_out"], [48, 4, 1, "", "count_degrees_signed_out_by_data_model"], [48, 4, 1, "", "count_degrees_signed_out_by_interaction_type"], [48, 4, 1, "", "count_degrees_signed_out_by_interaction_type_and_data_model"], [48, 4, 1, "", "count_degrees_signed_out_by_interaction_type_and_data_model_and_resource"], [48, 4, 1, "", "count_degrees_signed_out_by_reference"], [48, 4, 1, "", "count_degrees_signed_out_by_resource"], [48, 4, 1, "", "count_degrees_undirected"], [48, 4, 1, "", "count_degrees_undirected_by_data_model"], [48, 4, 1, "", "count_degrees_undirected_by_interaction_type"], [48, 4, 1, "", "count_degrees_undirected_by_interaction_type_and_data_model"], [48, 4, 1, "", "count_degrees_undirected_by_interaction_type_and_data_model_and_resource"], [48, 4, 1, "", "count_degrees_undirected_by_reference"], [48, 4, 1, "", "count_degrees_undirected_by_resource"], [48, 4, 1, "", "count_entities"], [48, 4, 1, "", "count_entities_by_data_model"], [48, 4, 1, "", "count_entities_by_interaction_type"], [48, 4, 1, "", "count_entities_by_interaction_type_and_data_model"], [48, 4, 1, "", "count_entities_by_interaction_type_and_data_model_and_resource"], [48, 4, 1, "", "count_entities_by_reference"], [48, 4, 1, "", "count_entities_by_resource"], [48, 4, 1, "", "count_evidences"], [48, 4, 1, "", "count_evidences_by_data_model"], [48, 4, 1, "", "count_evidences_by_interaction_type"], [48, 4, 1, "", "count_evidences_by_interaction_type_and_data_model"], [48, 4, 1, "", "count_evidences_by_interaction_type_and_data_model_and_resource"], [48, 4, 1, "", "count_evidences_by_reference"], [48, 4, 1, "", "count_evidences_by_resource"], [48, 4, 1, "", "count_identifiers"], [48, 4, 1, "", "count_identifiers_by_data_model"], [48, 4, 1, "", "count_identifiers_by_interaction_type"], [48, 4, 1, "", "count_identifiers_by_interaction_type_and_data_model"], [48, 4, 1, "", "count_identifiers_by_interaction_type_and_data_model_and_resource"], [48, 4, 1, "", "count_identifiers_by_reference"], [48, 4, 1, "", "count_identifiers_by_resource"], [48, 4, 1, "", "count_interaction_types"], [48, 4, 1, "", "count_interaction_types_by_data_model"], [48, 4, 1, "", "count_interaction_types_by_interaction_type"], [48, 4, 1, "", "count_interaction_types_by_interaction_type_and_data_model"], [48, 4, 1, "", "count_interaction_types_by_interaction_type_and_data_model_and_resource"], [48, 4, 1, "", "count_interaction_types_by_reference"], [48, 4, 1, "", "count_interaction_types_by_resource"], [48, 4, 1, "", "count_interactions"], [48, 4, 1, "", "count_interactions_0"], [48, 4, 1, "", "count_interactions_0_by_data_model"], [48, 4, 1, "", "count_interactions_0_by_interaction_type"], [48, 4, 1, "", "count_interactions_0_by_interaction_type_and_data_model"], [48, 4, 1, "", "count_interactions_0_by_interaction_type_and_data_model_and_resource"], [48, 4, 1, "", "count_interactions_0_by_reference"], [48, 4, 1, "", "count_interactions_0_by_resource"], [48, 4, 1, "", "count_interactions_by_data_model"], [48, 4, 1, "", "count_interactions_by_interaction_type"], [48, 4, 1, "", "count_interactions_by_interaction_type_and_data_model"], [48, 4, 1, "", "count_interactions_by_interaction_type_and_data_model_and_resource"], [48, 4, 1, "", "count_interactions_by_reference"], [48, 4, 1, "", "count_interactions_by_resource"], [48, 4, 1, "", "count_interactions_directed"], [48, 4, 1, "", "count_interactions_directed_by_data_model"], [48, 4, 1, "", "count_interactions_directed_by_interaction_type"], [48, 4, 1, "", "count_interactions_directed_by_interaction_type_and_data_model"], [48, 4, 1, "", "count_interactions_directed_by_interaction_type_and_data_model_and_resource"], [48, 4, 1, "", "count_interactions_directed_by_reference"], [48, 4, 1, "", "count_interactions_directed_by_resource"], [48, 4, 1, "", "count_interactions_mutual"], [48, 4, 1, "", "count_interactions_mutual_by_data_model"], [48, 4, 1, "", "count_interactions_mutual_by_interaction_type"], [48, 4, 1, "", "count_interactions_mutual_by_interaction_type_and_data_model"], [48, 4, 1, "", "count_interactions_mutual_by_interaction_type_and_data_model_and_resource"], [48, 4, 1, "", "count_interactions_mutual_by_reference"], [48, 4, 1, "", "count_interactions_mutual_by_resource"], [48, 4, 1, "", "count_interactions_negative"], [48, 4, 1, "", "count_interactions_negative_by_data_model"], [48, 4, 1, "", "count_interactions_negative_by_interaction_type"], [48, 4, 1, "", "count_interactions_negative_by_interaction_type_and_data_model"], [48, 4, 1, "", "count_interactions_negative_by_interaction_type_and_data_model_and_resource"], [48, 4, 1, "", "count_interactions_negative_by_reference"], [48, 4, 1, "", "count_interactions_negative_by_resource"], [48, 4, 1, "", "count_interactions_non_directed"], [48, 4, 1, "", "count_interactions_non_directed_0"], [48, 4, 1, "", "count_interactions_non_directed_0_by_data_model"], [48, 4, 1, "", "count_interactions_non_directed_0_by_interaction_type"], [48, 4, 1, "", "count_interactions_non_directed_0_by_interaction_type_and_data_model"], [48, 4, 1, "", "count_interactions_non_directed_0_by_interaction_type_and_data_model_and_resource"], [48, 4, 1, "", "count_interactions_non_directed_0_by_reference"], [48, 4, 1, "", "count_interactions_non_directed_0_by_resource"], [48, 4, 1, "", "count_interactions_non_directed_by_data_model"], [48, 4, 1, "", "count_interactions_non_directed_by_interaction_type"], [48, 4, 1, "", "count_interactions_non_directed_by_interaction_type_and_data_model"], [48, 4, 1, "", "count_interactions_non_directed_by_interaction_type_and_data_model_and_resource"], [48, 4, 1, "", "count_interactions_non_directed_by_reference"], [48, 4, 1, "", "count_interactions_non_directed_by_resource"], [48, 4, 1, "", "count_interactions_positive"], [48, 4, 1, "", "count_interactions_positive_by_data_model"], [48, 4, 1, "", "count_interactions_positive_by_interaction_type"], [48, 4, 1, "", "count_interactions_positive_by_interaction_type_and_data_model"], [48, 4, 1, "", "count_interactions_positive_by_interaction_type_and_data_model_and_resource"], [48, 4, 1, "", "count_interactions_positive_by_reference"], [48, 4, 1, "", "count_interactions_positive_by_resource"], [48, 4, 1, "", "count_interactions_signed"], [48, 4, 1, "", "count_interactions_signed_by_data_model"], [48, 4, 1, "", "count_interactions_signed_by_interaction_type"], [48, 4, 1, "", "count_interactions_signed_by_interaction_type_and_data_model"], [48, 4, 1, "", "count_interactions_signed_by_interaction_type_and_data_model_and_resource"], [48, 4, 1, "", "count_interactions_signed_by_reference"], [48, 4, 1, "", "count_interactions_signed_by_resource"], [48, 4, 1, "", "count_interactions_undirected"], [48, 4, 1, "", "count_interactions_undirected_0"], [48, 4, 1, "", "count_interactions_undirected_0_by_data_model"], [48, 4, 1, "", "count_interactions_undirected_0_by_interaction_type"], [48, 4, 1, "", "count_interactions_undirected_0_by_interaction_type_and_data_model"], [48, 4, 1, "", "count_interactions_undirected_0_by_interaction_type_and_data_model_and_resource"], [48, 4, 1, "", "count_interactions_undirected_0_by_reference"], [48, 4, 1, "", "count_interactions_undirected_0_by_resource"], [48, 4, 1, "", "count_interactions_undirected_by_data_model"], [48, 4, 1, "", "count_interactions_undirected_by_interaction_type"], [48, 4, 1, "", "count_interactions_undirected_by_interaction_type_and_data_model"], [48, 4, 1, "", "count_interactions_undirected_by_interaction_type_and_data_model_and_resource"], [48, 4, 1, "", "count_interactions_undirected_by_reference"], [48, 4, 1, "", "count_interactions_undirected_by_resource"], [48, 4, 1, "", "count_labels"], [48, 4, 1, "", "count_labels_by_data_model"], [48, 4, 1, "", "count_labels_by_interaction_type"], [48, 4, 1, "", "count_labels_by_interaction_type_and_data_model"], [48, 4, 1, "", "count_labels_by_interaction_type_and_data_model_and_resource"], [48, 4, 1, "", "count_labels_by_reference"], [48, 4, 1, "", "count_labels_by_resource"], [48, 4, 1, "", "count_lncrna_identifiers"], [48, 4, 1, "", "count_lncrna_identifiers_by_data_model"], [48, 4, 1, "", "count_lncrna_identifiers_by_interaction_type"], [48, 4, 1, "", "count_lncrna_identifiers_by_interaction_type_and_data_model"], [48, 4, 1, "", "count_lncrna_identifiers_by_interaction_type_and_data_model_and_resource"], [48, 4, 1, "", "count_lncrna_identifiers_by_reference"], [48, 4, 1, "", "count_lncrna_identifiers_by_resource"], [48, 4, 1, "", "count_lncrna_labels"], [48, 4, 1, "", "count_lncrna_labels_by_data_model"], [48, 4, 1, "", "count_lncrna_labels_by_interaction_type"], [48, 4, 1, "", "count_lncrna_labels_by_interaction_type_and_data_model"], [48, 4, 1, "", "count_lncrna_labels_by_interaction_type_and_data_model_and_resource"], [48, 4, 1, "", "count_lncrna_labels_by_reference"], [48, 4, 1, "", "count_lncrna_labels_by_resource"], [48, 4, 1, "", "count_lncrnas"], [48, 4, 1, "", "count_lncrnas_by_data_model"], [48, 4, 1, "", "count_lncrnas_by_interaction_type"], [48, 4, 1, "", "count_lncrnas_by_interaction_type_and_data_model"], [48, 4, 1, "", "count_lncrnas_by_interaction_type_and_data_model_and_resource"], [48, 4, 1, "", "count_lncrnas_by_reference"], [48, 4, 1, "", "count_lncrnas_by_resource"], [48, 4, 1, "", "count_mirna_identifiers"], [48, 4, 1, "", "count_mirna_identifiers_by_data_model"], [48, 4, 1, "", "count_mirna_identifiers_by_interaction_type"], [48, 4, 1, "", "count_mirna_identifiers_by_interaction_type_and_data_model"], [48, 4, 1, "", "count_mirna_identifiers_by_interaction_type_and_data_model_and_resource"], [48, 4, 1, "", "count_mirna_identifiers_by_reference"], [48, 4, 1, "", "count_mirna_identifiers_by_resource"], [48, 4, 1, "", "count_mirna_labels"], [48, 4, 1, "", "count_mirna_labels_by_data_model"], [48, 4, 1, "", "count_mirna_labels_by_interaction_type"], [48, 4, 1, "", "count_mirna_labels_by_interaction_type_and_data_model"], [48, 4, 1, "", "count_mirna_labels_by_interaction_type_and_data_model_and_resource"], [48, 4, 1, "", "count_mirna_labels_by_reference"], [48, 4, 1, "", "count_mirna_labels_by_resource"], [48, 4, 1, "", "count_mirnas"], [48, 4, 1, "", "count_mirnas_by_data_model"], [48, 4, 1, "", "count_mirnas_by_interaction_type"], [48, 4, 1, "", "count_mirnas_by_interaction_type_and_data_model"], [48, 4, 1, "", "count_mirnas_by_interaction_type_and_data_model_and_resource"], [48, 4, 1, "", "count_mirnas_by_reference"], [48, 4, 1, "", "count_mirnas_by_resource"], [48, 2, 1, "", "count_partners"], [48, 4, 1, "", "count_post_transcriptionally_activated_by"], [48, 4, 1, "", "count_post_transcriptionally_activates"], [48, 4, 1, "", "count_post_transcriptionally_regulated_by"], [48, 4, 1, "", "count_post_transcriptionally_regulates"], [48, 4, 1, "", "count_post_transcriptionally_suppressed_by"], [48, 4, 1, "", "count_post_transcriptionally_suppresses"], [48, 4, 1, "", "count_post_translationally_activated_by"], [48, 4, 1, "", "count_post_translationally_activates"], [48, 4, 1, "", "count_post_translationally_regulated_by"], [48, 4, 1, "", "count_post_translationally_regulates"], [48, 4, 1, "", "count_post_translationally_suppressed_by"], [48, 4, 1, "", "count_post_translationally_suppresses"], [48, 4, 1, "", "count_protein_identifiers"], [48, 4, 1, "", "count_protein_identifiers_by_data_model"], [48, 4, 1, "", "count_protein_identifiers_by_interaction_type"], [48, 4, 1, "", "count_protein_identifiers_by_interaction_type_and_data_model"], [48, 4, 1, "", "count_protein_identifiers_by_interaction_type_and_data_model_and_resource"], [48, 4, 1, "", "count_protein_identifiers_by_reference"], [48, 4, 1, "", "count_protein_identifiers_by_resource"], [48, 4, 1, "", "count_protein_labels"], [48, 4, 1, "", "count_protein_labels_by_data_model"], [48, 4, 1, "", "count_protein_labels_by_interaction_type"], [48, 4, 1, "", "count_protein_labels_by_interaction_type_and_data_model"], [48, 4, 1, "", "count_protein_labels_by_interaction_type_and_data_model_and_resource"], [48, 4, 1, "", "count_protein_labels_by_reference"], [48, 4, 1, "", "count_protein_labels_by_resource"], [48, 4, 1, "", "count_proteins"], [48, 4, 1, "", "count_proteins_by_data_model"], [48, 4, 1, "", "count_proteins_by_interaction_type"], [48, 4, 1, "", "count_proteins_by_interaction_type_and_data_model"], [48, 4, 1, "", "count_proteins_by_interaction_type_and_data_model_and_resource"], [48, 4, 1, "", "count_proteins_by_reference"], [48, 4, 1, "", "count_proteins_by_resource"], [48, 4, 1, "", "count_references"], [48, 4, 1, "", "count_references_by_data_model"], [48, 4, 1, "", "count_references_by_interaction_type"], [48, 4, 1, "", "count_references_by_interaction_type_and_data_model"], [48, 4, 1, "", "count_references_by_interaction_type_and_data_model_and_resource"], [48, 4, 1, "", "count_references_by_reference"], [48, 4, 1, "", "count_references_by_resource"], [48, 4, 1, "", "count_regulated_by"], [48, 4, 1, "", "count_regulates"], [48, 4, 1, "", "count_resource_names"], [48, 4, 1, "", "count_resource_names_by_data_model"], [48, 4, 1, "", "count_resource_names_by_interaction_type"], [48, 4, 1, "", "count_resource_names_by_interaction_type_and_data_model"], [48, 4, 1, "", "count_resource_names_by_interaction_type_and_data_model_and_resource"], [48, 4, 1, "", "count_resource_names_by_reference"], [48, 4, 1, "", "count_resource_names_by_resource"], [48, 4, 1, "", "count_resource_names_via"], [48, 4, 1, "", "count_resource_names_via_by_data_model"], [48, 4, 1, "", "count_resource_names_via_by_interaction_type"], [48, 4, 1, "", "count_resource_names_via_by_interaction_type_and_data_model"], [48, 4, 1, "", "count_resource_names_via_by_interaction_type_and_data_model_and_resource"], [48, 4, 1, "", "count_resource_names_via_by_reference"], [48, 4, 1, "", "count_resource_names_via_by_resource"], [48, 4, 1, "", "count_resources"], [48, 4, 1, "", "count_resources_by_data_model"], [48, 4, 1, "", "count_resources_by_interaction_type"], [48, 4, 1, "", "count_resources_by_interaction_type_and_data_model"], [48, 4, 1, "", "count_resources_by_interaction_type_and_data_model_and_resource"], [48, 4, 1, "", "count_resources_by_reference"], [48, 4, 1, "", "count_resources_by_resource"], [48, 4, 1, "", "count_resources_via"], [48, 4, 1, "", "count_resources_via_by_data_model"], [48, 4, 1, "", "count_resources_via_by_interaction_type"], [48, 4, 1, "", "count_resources_via_by_interaction_type_and_data_model"], [48, 4, 1, "", "count_resources_via_by_interaction_type_and_data_model_and_resource"], [48, 4, 1, "", "count_resources_via_by_reference"], [48, 4, 1, "", "count_resources_via_by_resource"], [48, 4, 1, "", "count_small_molecule_identifiers"], [48, 4, 1, "", "count_small_molecule_identifiers_by_data_model"], [48, 4, 1, "", "count_small_molecule_identifiers_by_interaction_type"], [48, 4, 1, "", "count_small_molecule_identifiers_by_interaction_type_and_data_model"], [48, 4, 1, "", "count_small_molecule_identifiers_by_interaction_type_and_data_model_and_resource"], [48, 4, 1, "", "count_small_molecule_identifiers_by_reference"], [48, 4, 1, "", "count_small_molecule_identifiers_by_resource"], [48, 4, 1, "", "count_small_molecule_labels"], [48, 4, 1, "", "count_small_molecule_labels_by_data_model"], [48, 4, 1, "", "count_small_molecule_labels_by_interaction_type"], [48, 4, 1, "", "count_small_molecule_labels_by_interaction_type_and_data_model"], [48, 4, 1, "", "count_small_molecule_labels_by_interaction_type_and_data_model_and_resource"], [48, 4, 1, "", "count_small_molecule_labels_by_reference"], [48, 4, 1, "", "count_small_molecule_labels_by_resource"], [48, 4, 1, "", "count_small_molecules"], [48, 4, 1, "", "count_small_molecules_by_data_model"], [48, 4, 1, "", "count_small_molecules_by_interaction_type"], [48, 4, 1, "", "count_small_molecules_by_interaction_type_and_data_model"], [48, 4, 1, "", "count_small_molecules_by_interaction_type_and_data_model_and_resource"], [48, 4, 1, "", "count_small_molecules_by_reference"], [48, 4, 1, "", "count_small_molecules_by_resource"], [48, 4, 1, "", "count_suppressed_by"], [48, 4, 1, "", "count_suppresses"], [48, 4, 1, "", "count_transcriptionally_activated_by"], [48, 4, 1, "", "count_transcriptionally_activates"], [48, 4, 1, "", "count_transcriptionally_regulated_by"], [48, 4, 1, "", "count_transcriptionally_regulates"], [48, 4, 1, "", "count_transcriptionally_suppressed_by"], [48, 4, 1, "", "count_transcriptionally_suppresses"], [48, 4, 1, "", "curation_effort_by_data_model"], [48, 4, 1, "", "curation_effort_by_interaction_type"], [48, 4, 1, "", "curation_effort_by_interaction_type_and_data_model"], [48, 4, 1, "", "curation_effort_by_interaction_type_and_data_model_and_resource"], [48, 4, 1, "", "curation_effort_by_reference"], [48, 4, 1, "", "curation_effort_by_resource"], [48, 4, 1, "", "data_models_by_data_model"], [48, 4, 1, "", "data_models_by_interaction_type"], [48, 4, 1, "", "data_models_by_interaction_type_and_data_model"], [48, 4, 1, "", "data_models_by_interaction_type_and_data_model_and_resource"], [48, 4, 1, "", "data_models_by_reference"], [48, 4, 1, "", "data_models_by_resource"], [48, 4, 1, "", "datasets_by_data_model"], [48, 4, 1, "", "datasets_by_interaction_type"], [48, 4, 1, "", "datasets_by_interaction_type_and_data_model"], [48, 4, 1, "", "datasets_by_interaction_type_and_data_model_and_resource"], [48, 4, 1, "", "datasets_by_reference"], [48, 4, 1, "", "datasets_by_resource"], [48, 4, 1, "", "degrees_directed_by_data_model"], [48, 4, 1, "", "degrees_directed_by_interaction_type"], [48, 4, 1, "", "degrees_directed_by_interaction_type_and_data_model"], [48, 4, 1, "", "degrees_directed_by_interaction_type_and_data_model_and_resource"], [48, 4, 1, "", "degrees_directed_by_reference"], [48, 4, 1, "", "degrees_directed_by_resource"], [48, 4, 1, "", "degrees_directed_in_by_data_model"], [48, 4, 1, "", "degrees_directed_in_by_interaction_type"], [48, 4, 1, "", "degrees_directed_in_by_interaction_type_and_data_model"], [48, 4, 1, "", "degrees_directed_in_by_interaction_type_and_data_model_and_resource"], [48, 4, 1, "", "degrees_directed_in_by_reference"], [48, 4, 1, "", "degrees_directed_in_by_resource"], [48, 4, 1, "", "degrees_directed_out_by_data_model"], [48, 4, 1, "", "degrees_directed_out_by_interaction_type"], [48, 4, 1, "", "degrees_directed_out_by_interaction_type_and_data_model"], [48, 4, 1, "", "degrees_directed_out_by_interaction_type_and_data_model_and_resource"], [48, 4, 1, "", "degrees_directed_out_by_reference"], [48, 4, 1, "", "degrees_directed_out_by_resource"], [48, 4, 1, "", "degrees_negative_by_data_model"], [48, 4, 1, "", "degrees_negative_by_interaction_type"], [48, 4, 1, "", "degrees_negative_by_interaction_type_and_data_model"], [48, 4, 1, "", "degrees_negative_by_interaction_type_and_data_model_and_resource"], [48, 4, 1, "", "degrees_negative_by_reference"], [48, 4, 1, "", "degrees_negative_by_resource"], [48, 4, 1, "", "degrees_negative_in_by_data_model"], [48, 4, 1, "", "degrees_negative_in_by_interaction_type"], [48, 4, 1, "", "degrees_negative_in_by_interaction_type_and_data_model"], [48, 4, 1, "", "degrees_negative_in_by_interaction_type_and_data_model_and_resource"], [48, 4, 1, "", "degrees_negative_in_by_reference"], [48, 4, 1, "", "degrees_negative_in_by_resource"], [48, 4, 1, "", "degrees_negative_out_by_data_model"], [48, 4, 1, "", "degrees_negative_out_by_interaction_type"], [48, 4, 1, "", "degrees_negative_out_by_interaction_type_and_data_model"], [48, 4, 1, "", "degrees_negative_out_by_interaction_type_and_data_model_and_resource"], [48, 4, 1, "", "degrees_negative_out_by_reference"], [48, 4, 1, "", "degrees_negative_out_by_resource"], [48, 4, 1, "", "degrees_non_directed_by_data_model"], [48, 4, 1, "", "degrees_non_directed_by_interaction_type"], [48, 4, 1, "", "degrees_non_directed_by_interaction_type_and_data_model"], [48, 4, 1, "", "degrees_non_directed_by_interaction_type_and_data_model_and_resource"], [48, 4, 1, "", "degrees_non_directed_by_reference"], [48, 4, 1, "", "degrees_non_directed_by_resource"], [48, 4, 1, "", "degrees_positive_by_data_model"], [48, 4, 1, "", "degrees_positive_by_interaction_type"], [48, 4, 1, "", "degrees_positive_by_interaction_type_and_data_model"], [48, 4, 1, "", "degrees_positive_by_interaction_type_and_data_model_and_resource"], [48, 4, 1, "", "degrees_positive_by_reference"], [48, 4, 1, "", "degrees_positive_by_resource"], [48, 4, 1, "", "degrees_positive_in_by_data_model"], [48, 4, 1, "", "degrees_positive_in_by_interaction_type"], [48, 4, 1, "", "degrees_positive_in_by_interaction_type_and_data_model"], [48, 4, 1, "", "degrees_positive_in_by_interaction_type_and_data_model_and_resource"], [48, 4, 1, "", "degrees_positive_in_by_reference"], [48, 4, 1, "", "degrees_positive_in_by_resource"], [48, 4, 1, "", "degrees_positive_out_by_data_model"], [48, 4, 1, "", "degrees_positive_out_by_interaction_type"], [48, 4, 1, "", "degrees_positive_out_by_interaction_type_and_data_model"], [48, 4, 1, "", "degrees_positive_out_by_interaction_type_and_data_model_and_resource"], [48, 4, 1, "", "degrees_positive_out_by_reference"], [48, 4, 1, "", "degrees_positive_out_by_resource"], [48, 4, 1, "", "degrees_signed_by_data_model"], [48, 4, 1, "", "degrees_signed_by_interaction_type"], [48, 4, 1, "", "degrees_signed_by_interaction_type_and_data_model"], [48, 4, 1, "", "degrees_signed_by_interaction_type_and_data_model_and_resource"], [48, 4, 1, "", "degrees_signed_by_reference"], [48, 4, 1, "", "degrees_signed_by_resource"], [48, 4, 1, "", "degrees_signed_in_by_data_model"], [48, 4, 1, "", "degrees_signed_in_by_interaction_type"], [48, 4, 1, "", "degrees_signed_in_by_interaction_type_and_data_model"], [48, 4, 1, "", "degrees_signed_in_by_interaction_type_and_data_model_and_resource"], [48, 4, 1, "", "degrees_signed_in_by_reference"], [48, 4, 1, "", "degrees_signed_in_by_resource"], [48, 4, 1, "", "degrees_signed_out_by_data_model"], [48, 4, 1, "", "degrees_signed_out_by_interaction_type"], [48, 4, 1, "", "degrees_signed_out_by_interaction_type_and_data_model"], [48, 4, 1, "", "degrees_signed_out_by_interaction_type_and_data_model_and_resource"], [48, 4, 1, "", "degrees_signed_out_by_reference"], [48, 4, 1, "", "degrees_signed_out_by_resource"], [48, 4, 1, "", "degrees_undirected_by_data_model"], [48, 4, 1, "", "degrees_undirected_by_interaction_type"], [48, 4, 1, "", "degrees_undirected_by_interaction_type_and_data_model"], [48, 4, 1, "", "degrees_undirected_by_interaction_type_and_data_model_and_resource"], [48, 4, 1, "", "degrees_undirected_by_reference"], [48, 4, 1, "", "degrees_undirected_by_resource"], [48, 2, 1, "", "direction_consistency"], [48, 2, 1, "", "dorothea"], [48, 4, 1, "", "entities_by_data_model"], [48, 4, 1, "", "entities_by_interaction_type"], [48, 4, 1, "", "entities_by_interaction_type_and_data_model"], [48, 4, 1, "", "entities_by_interaction_type_and_data_model_and_resource"], [48, 4, 1, "", "entities_by_reference"], [48, 4, 1, "", "entities_by_resource"], [48, 2, 1, "", "entity_by_id"], [48, 2, 1, "", "entity_by_label"], [48, 4, 1, "", "evidences_by_data_model"], [48, 4, 1, "", "evidences_by_interaction_type"], [48, 4, 1, "", "evidences_by_interaction_type_and_data_model"], [48, 4, 1, "", "evidences_by_interaction_type_and_data_model_and_resource"], [48, 4, 1, "", "evidences_by_reference"], [48, 4, 1, "", "evidences_by_resource"], [48, 2, 1, "", "extra_directions"], [48, 2, 1, "", "find_paths"], [48, 2, 1, "", "from_igraph"], [48, 2, 1, "", "from_pickle"], [48, 4, 1, "", "get_complex_identifiers"], [48, 4, 1, "", "get_complex_labels"], [48, 4, 1, "", "get_complexes"], [48, 4, 1, "", "get_curation_effort"], [48, 4, 1, "", "get_data_models"], [48, 4, 1, "", "get_datasets"], [48, 4, 1, "", "get_degrees_directed"], [48, 4, 1, "", "get_degrees_directed_in"], [48, 4, 1, "", "get_degrees_directed_out"], [48, 4, 1, "", "get_degrees_negative"], [48, 4, 1, "", "get_degrees_negative_in"], [48, 4, 1, "", "get_degrees_negative_out"], [48, 4, 1, "", "get_degrees_non_directed"], [48, 4, 1, "", "get_degrees_positive"], [48, 4, 1, "", "get_degrees_positive_in"], [48, 4, 1, "", "get_degrees_positive_out"], [48, 4, 1, "", "get_degrees_signed"], [48, 4, 1, "", "get_degrees_signed_in"], [48, 4, 1, "", "get_degrees_signed_out"], [48, 4, 1, "", "get_degrees_undirected"], [48, 4, 1, "", "get_entities"], [48, 4, 1, "", "get_evidences"], [48, 4, 1, "", "get_identifiers"], [48, 4, 1, "", "get_interaction_types"], [48, 4, 1, "", "get_interactions"], [48, 4, 1, "", "get_interactions_0"], [48, 4, 1, "", "get_interactions_directed"], [48, 4, 1, "", "get_interactions_mutual"], [48, 4, 1, "", "get_interactions_negative"], [48, 4, 1, "", "get_interactions_non_directed"], [48, 4, 1, "", "get_interactions_non_directed_0"], [48, 4, 1, "", "get_interactions_positive"], [48, 4, 1, "", "get_interactions_signed"], [48, 4, 1, "", "get_interactions_undirected"], [48, 4, 1, "", "get_interactions_undirected_0"], [48, 4, 1, "", "get_labels"], [48, 4, 1, "", "get_lncrna_identifiers"], [48, 4, 1, "", "get_lncrna_labels"], [48, 4, 1, "", "get_lncrnas"], [48, 4, 1, "", "get_mirna_identifiers"], [48, 4, 1, "", "get_mirna_labels"], [48, 4, 1, "", "get_mirnas"], [48, 2, 1, "", "get_organisms"], [48, 4, 1, "", "get_protein_identifiers"], [48, 4, 1, "", "get_protein_labels"], [48, 4, 1, "", "get_proteins"], [48, 4, 1, "", "get_references"], [48, 4, 1, "", "get_resource_names"], [48, 4, 1, "", "get_resource_names_via"], [48, 4, 1, "", "get_resources"], [48, 4, 1, "", "get_resources_via"], [48, 4, 1, "", "get_small_molecule_identifiers"], [48, 4, 1, "", "get_small_molecule_labels"], [48, 4, 1, "", "get_small_molecules"], [48, 2, 1, "", "htp_interactions"], [48, 2, 1, "", "htp_references"], [48, 4, 1, "", "identifiers_by_data_model"], [48, 4, 1, "", "identifiers_by_interaction_type"], [48, 4, 1, "", "identifiers_by_interaction_type_and_data_model"], [48, 4, 1, "", "identifiers_by_interaction_type_and_data_model_and_resource"], [48, 4, 1, "", "identifiers_by_reference"], [48, 4, 1, "", "identifiers_by_resource"], [48, 2, 1, "", "init_network"], [48, 2, 1, "", "interaction"], [48, 2, 1, "", "interaction_by_id"], [48, 2, 1, "", "interaction_by_label"], [48, 4, 1, "", "interaction_types_by_data_model"], [48, 4, 1, "", "interaction_types_by_interaction_type"], [48, 4, 1, "", "interaction_types_by_interaction_type_and_data_model"], [48, 4, 1, "", "interaction_types_by_interaction_type_and_data_model_and_resource"], [48, 4, 1, "", "interaction_types_by_reference"], [48, 4, 1, "", "interaction_types_by_resource"], [48, 4, 1, "", "interactions_0_by_data_model"], [48, 4, 1, "", "interactions_0_by_interaction_type"], [48, 4, 1, "", "interactions_0_by_interaction_type_and_data_model"], [48, 4, 1, "", "interactions_0_by_interaction_type_and_data_model_and_resource"], [48, 4, 1, "", "interactions_0_by_reference"], [48, 4, 1, "", "interactions_0_by_resource"], [48, 4, 1, "", "interactions_by_data_model"], [48, 4, 1, "", "interactions_by_interaction_type"], [48, 4, 1, "", "interactions_by_interaction_type_and_data_model"], [48, 4, 1, "", "interactions_by_interaction_type_and_data_model_and_resource"], [48, 4, 1, "", "interactions_by_reference"], [48, 4, 1, "", "interactions_by_resource"], [48, 4, 1, "", "interactions_directed_by_data_model"], [48, 4, 1, "", "interactions_directed_by_interaction_type"], [48, 4, 1, "", "interactions_directed_by_interaction_type_and_data_model"], [48, 4, 1, "", "interactions_directed_by_interaction_type_and_data_model_and_resource"], [48, 4, 1, "", "interactions_directed_by_reference"], [48, 4, 1, "", "interactions_directed_by_resource"], [48, 4, 1, "", "interactions_mutual_by_data_model"], [48, 4, 1, "", "interactions_mutual_by_interaction_type"], [48, 4, 1, "", "interactions_mutual_by_interaction_type_and_data_model"], [48, 4, 1, "", "interactions_mutual_by_interaction_type_and_data_model_and_resource"], [48, 4, 1, "", "interactions_mutual_by_reference"], [48, 4, 1, "", "interactions_mutual_by_resource"], [48, 4, 1, "", "interactions_negative_by_data_model"], [48, 4, 1, "", "interactions_negative_by_interaction_type"], [48, 4, 1, "", "interactions_negative_by_interaction_type_and_data_model"], [48, 4, 1, "", "interactions_negative_by_interaction_type_and_data_model_and_resource"], [48, 4, 1, "", "interactions_negative_by_reference"], [48, 4, 1, "", "interactions_negative_by_resource"], [48, 4, 1, "", "interactions_non_directed_0_by_data_model"], [48, 4, 1, "", "interactions_non_directed_0_by_interaction_type"], [48, 4, 1, "", "interactions_non_directed_0_by_interaction_type_and_data_model"], [48, 4, 1, "", "interactions_non_directed_0_by_interaction_type_and_data_model_and_resource"], [48, 4, 1, "", "interactions_non_directed_0_by_reference"], [48, 4, 1, "", "interactions_non_directed_0_by_resource"], [48, 4, 1, "", "interactions_non_directed_by_data_model"], [48, 4, 1, "", "interactions_non_directed_by_interaction_type"], [48, 4, 1, "", "interactions_non_directed_by_interaction_type_and_data_model"], [48, 4, 1, "", "interactions_non_directed_by_interaction_type_and_data_model_and_resource"], [48, 4, 1, "", "interactions_non_directed_by_reference"], [48, 4, 1, "", "interactions_non_directed_by_resource"], [48, 4, 1, "", "interactions_positive_by_data_model"], [48, 4, 1, "", "interactions_positive_by_interaction_type"], [48, 4, 1, "", "interactions_positive_by_interaction_type_and_data_model"], [48, 4, 1, "", "interactions_positive_by_interaction_type_and_data_model_and_resource"], [48, 4, 1, "", "interactions_positive_by_reference"], [48, 4, 1, "", "interactions_positive_by_resource"], [48, 4, 1, "", "interactions_signed_by_data_model"], [48, 4, 1, "", "interactions_signed_by_interaction_type"], [48, 4, 1, "", "interactions_signed_by_interaction_type_and_data_model"], [48, 4, 1, "", "interactions_signed_by_interaction_type_and_data_model_and_resource"], [48, 4, 1, "", "interactions_signed_by_reference"], [48, 4, 1, "", "interactions_signed_by_resource"], [48, 4, 1, "", "interactions_undirected_0_by_data_model"], [48, 4, 1, "", "interactions_undirected_0_by_interaction_type"], [48, 4, 1, "", "interactions_undirected_0_by_interaction_type_and_data_model"], [48, 4, 1, "", "interactions_undirected_0_by_interaction_type_and_data_model_and_resource"], [48, 4, 1, "", "interactions_undirected_0_by_reference"], [48, 4, 1, "", "interactions_undirected_0_by_resource"], [48, 4, 1, "", "interactions_undirected_by_data_model"], [48, 4, 1, "", "interactions_undirected_by_interaction_type"], [48, 4, 1, "", "interactions_undirected_by_interaction_type_and_data_model"], [48, 4, 1, "", "interactions_undirected_by_interaction_type_and_data_model_and_resource"], [48, 4, 1, "", "interactions_undirected_by_reference"], [48, 4, 1, "", "interactions_undirected_by_resource"], [48, 4, 1, "", "labels_by_data_model"], [48, 4, 1, "", "labels_by_interaction_type"], [48, 4, 1, "", "labels_by_interaction_type_and_data_model"], [48, 4, 1, "", "labels_by_interaction_type_and_data_model_and_resource"], [48, 4, 1, "", "labels_by_reference"], [48, 4, 1, "", "labels_by_resource"], [48, 4, 1, "", "lncrna_identifiers_by_data_model"], [48, 4, 1, "", "lncrna_identifiers_by_interaction_type"], [48, 4, 1, "", "lncrna_identifiers_by_interaction_type_and_data_model"], [48, 4, 1, "", "lncrna_identifiers_by_interaction_type_and_data_model_and_resource"], [48, 4, 1, "", "lncrna_identifiers_by_reference"], [48, 4, 1, "", "lncrna_identifiers_by_resource"], [48, 4, 1, "", "lncrna_labels_by_data_model"], [48, 4, 1, "", "lncrna_labels_by_interaction_type"], [48, 4, 1, "", "lncrna_labels_by_interaction_type_and_data_model"], [48, 4, 1, "", "lncrna_labels_by_interaction_type_and_data_model_and_resource"], [48, 4, 1, "", "lncrna_labels_by_reference"], [48, 4, 1, "", "lncrna_labels_by_resource"], [48, 4, 1, "", "lncrnas_by_data_model"], [48, 4, 1, "", "lncrnas_by_interaction_type"], [48, 4, 1, "", "lncrnas_by_interaction_type_and_data_model"], [48, 4, 1, "", "lncrnas_by_interaction_type_and_data_model_and_resource"], [48, 4, 1, "", "lncrnas_by_reference"], [48, 4, 1, "", "lncrnas_by_resource"], [48, 2, 1, "", "load"], [48, 2, 1, "", "load_from_pickle"], [48, 2, 1, "", "load_resource"], [48, 2, 1, "", "load_resources"], [48, 2, 1, "", "make_df"], [48, 4, 1, "", "mirna_identifiers_by_data_model"], [48, 4, 1, "", "mirna_identifiers_by_interaction_type"], [48, 4, 1, "", "mirna_identifiers_by_interaction_type_and_data_model"], [48, 4, 1, "", "mirna_identifiers_by_interaction_type_and_data_model_and_resource"], [48, 4, 1, "", "mirna_identifiers_by_reference"], [48, 4, 1, "", "mirna_identifiers_by_resource"], [48, 4, 1, "", "mirna_labels_by_data_model"], [48, 4, 1, "", "mirna_labels_by_interaction_type"], [48, 4, 1, "", "mirna_labels_by_interaction_type_and_data_model"], [48, 4, 1, "", "mirna_labels_by_interaction_type_and_data_model_and_resource"], [48, 4, 1, "", "mirna_labels_by_reference"], [48, 4, 1, "", "mirna_labels_by_resource"], [48, 2, 1, "", "mirna_target"], [48, 4, 1, "", "mirnas_by_data_model"], [48, 4, 1, "", "mirnas_by_interaction_type"], [48, 4, 1, "", "mirnas_by_interaction_type_and_data_model"], [48, 4, 1, "", "mirnas_by_interaction_type_and_data_model_and_resource"], [48, 4, 1, "", "mirnas_by_reference"], [48, 4, 1, "", "mirnas_by_resource"], [48, 2, 1, "", "numof_interactions_per_reference"], [48, 2, 1, "", "organisms_check"], [48, 2, 1, "", "partners"], [48, 4, 1, "", "post_transcriptionally_activated_by"], [48, 4, 1, "", "post_transcriptionally_activates"], [48, 4, 1, "", "post_transcriptionally_regulated_by"], [48, 4, 1, "", "post_transcriptionally_regulates"], [48, 4, 1, "", "post_transcriptionally_suppressed_by"], [48, 4, 1, "", "post_transcriptionally_suppresses"], [48, 4, 1, "", "post_translationally_activated_by"], [48, 4, 1, "", "post_translationally_activates"], [48, 4, 1, "", "post_translationally_regulated_by"], [48, 4, 1, "", "post_translationally_regulates"], [48, 4, 1, "", "post_translationally_suppressed_by"], [48, 4, 1, "", "post_translationally_suppresses"], [48, 4, 1, "", "protein_identifiers_by_data_model"], [48, 4, 1, "", "protein_identifiers_by_interaction_type"], [48, 4, 1, "", "protein_identifiers_by_interaction_type_and_data_model"], [48, 4, 1, "", "protein_identifiers_by_interaction_type_and_data_model_and_resource"], [48, 4, 1, "", "protein_identifiers_by_reference"], [48, 4, 1, "", "protein_identifiers_by_resource"], [48, 4, 1, "", "protein_labels_by_data_model"], [48, 4, 1, "", "protein_labels_by_interaction_type"], [48, 4, 1, "", "protein_labels_by_interaction_type_and_data_model"], [48, 4, 1, "", "protein_labels_by_interaction_type_and_data_model_and_resource"], [48, 4, 1, "", "protein_labels_by_reference"], [48, 4, 1, "", "protein_labels_by_resource"], [48, 4, 1, "", "proteins_by_data_model"], [48, 4, 1, "", "proteins_by_interaction_type"], [48, 4, 1, "", "proteins_by_interaction_type_and_data_model"], [48, 4, 1, "", "proteins_by_interaction_type_and_data_model_and_resource"], [48, 4, 1, "", "proteins_by_reference"], [48, 4, 1, "", "proteins_by_resource"], [48, 2, 1, "", "random_interaction"], [48, 4, 1, "", "references_by_data_model"], [48, 4, 1, "", "references_by_interaction_type"], [48, 4, 1, "", "references_by_interaction_type_and_data_model"], [48, 4, 1, "", "references_by_interaction_type_and_data_model_and_resource"], [48, 4, 1, "", "references_by_reference"], [48, 4, 1, "", "references_by_resource"], [48, 4, 1, "", "regulated_by"], [48, 4, 1, "", "regulates"], [48, 2, 1, "", "reload"], [48, 2, 1, "", "remove_interaction"], [48, 2, 1, "", "remove_loops"], [48, 2, 1, "", "remove_node"], [48, 2, 1, "", "remove_zero_degree"], [48, 2, 1, "", "reset"], [48, 5, 1, "", "resource_names"], [48, 4, 1, "", "resource_names_by_data_model"], [48, 4, 1, "", "resource_names_by_interaction_type"], [48, 4, 1, "", "resource_names_by_interaction_type_and_data_model"], [48, 4, 1, "", "resource_names_by_interaction_type_and_data_model_and_resource"], [48, 4, 1, "", "resource_names_by_reference"], [48, 4, 1, "", "resource_names_by_resource"], [48, 4, 1, "", "resource_names_via_by_data_model"], [48, 4, 1, "", "resource_names_via_by_interaction_type"], [48, 4, 1, "", "resource_names_via_by_interaction_type_and_data_model"], [48, 4, 1, "", "resource_names_via_by_interaction_type_and_data_model_and_resource"], [48, 4, 1, "", "resource_names_via_by_reference"], [48, 4, 1, "", "resource_names_via_by_resource"], [48, 5, 1, "", "resources"], [48, 4, 1, "", "resources_by_data_model"], [48, 4, 1, "", "resources_by_interaction_type"], [48, 4, 1, "", "resources_by_interaction_type_and_data_model"], [48, 4, 1, "", "resources_by_interaction_type_and_data_model_and_resource"], [48, 4, 1, "", "resources_by_reference"], [48, 4, 1, "", "resources_by_resource"], [48, 4, 1, "", "resources_via_by_data_model"], [48, 4, 1, "", "resources_via_by_interaction_type"], [48, 4, 1, "", "resources_via_by_interaction_type_and_data_model"], [48, 4, 1, "", "resources_via_by_interaction_type_and_data_model_and_resource"], [48, 4, 1, "", "resources_via_by_reference"], [48, 4, 1, "", "resources_via_by_resource"], [48, 2, 1, "", "save_to_pickle"], [48, 4, 1, "", "small_molecule_identifiers_by_data_model"], [48, 4, 1, "", "small_molecule_identifiers_by_interaction_type"], [48, 4, 1, "", "small_molecule_identifiers_by_interaction_type_and_data_model"], [48, 4, 1, "", "small_molecule_identifiers_by_interaction_type_and_data_model_and_resource"], [48, 4, 1, "", "small_molecule_identifiers_by_reference"], [48, 4, 1, "", "small_molecule_identifiers_by_resource"], [48, 4, 1, "", "small_molecule_labels_by_data_model"], [48, 4, 1, "", "small_molecule_labels_by_interaction_type"], [48, 4, 1, "", "small_molecule_labels_by_interaction_type_and_data_model"], [48, 4, 1, "", "small_molecule_labels_by_interaction_type_and_data_model_and_resource"], [48, 4, 1, "", "small_molecule_labels_by_reference"], [48, 4, 1, "", "small_molecule_labels_by_resource"], [48, 4, 1, "", "small_molecules_by_data_model"], [48, 4, 1, "", "small_molecules_by_interaction_type"], [48, 4, 1, "", "small_molecules_by_interaction_type_and_data_model"], [48, 4, 1, "", "small_molecules_by_interaction_type_and_data_model_and_resource"], [48, 4, 1, "", "small_molecules_by_reference"], [48, 4, 1, "", "small_molecules_by_resource"], [48, 2, 1, "", "summaries_tab"], [48, 4, 1, "", "suppressed_by"], [48, 4, 1, "", "suppresses"], [48, 2, 1, "", "to_igraph"], [48, 2, 1, "", "transcription"], [48, 4, 1, "", "transcriptionally_activated_by"], [48, 4, 1, "", "transcriptionally_activates"], [48, 4, 1, "", "transcriptionally_regulated_by"], [48, 4, 1, "", "transcriptionally_regulates"], [48, 4, 1, "", "transcriptionally_suppressed_by"], [48, 4, 1, "", "transcriptionally_suppresses"]], "pypath.core.network.NetworkEntityCollection": [[49, 2, 1, "", "__init__"]], "pypath.core.network.NetworkStatsRecord": [[50, 2, 1, "", "__init__"], [50, 4, 1, "", "by_category"], [50, 4, 1, "", "by_resource"], [50, 4, 1, "", "cat_resource"], [50, 2, 1, "", "count"], [50, 2, 1, "", "index"], [50, 4, 1, "", "label"], [50, 4, 1, "", "method"], [50, 4, 1, "", "percent"], [50, 4, 1, "", "percent_cat"], [50, 4, 1, "", "percent_res_cat"], [50, 4, 1, "", "resource_cat"], [50, 4, 1, "", "shared"], [50, 4, 1, "", "shared_cat"], [50, 4, 1, "", "shared_res_cat"], [50, 4, 1, "", "total"], [50, 4, 1, "", "unique"], [50, 4, 1, "", "unique_cat"], [50, 4, 1, "", "unique_res_cat"]], "pypath.inputs": [[57, 0, 0, "-", "abs"], [59, 0, 0, "-", "acsn"], [62, 0, 0, "-", "adhesome"], [65, 0, 0, "-", "adrecs"], [75, 0, 0, "-", "almen2009"], [77, 0, 0, "-", "baccin2019"], [80, 0, 0, "-", "biogps"], [86, 0, 0, "-", "biogrid"], [89, 0, 0, "-", "biomart"], [95, 0, 0, "-", "biomodels"], [101, 0, 0, "-", "ca1"], [103, 0, 0, "-", "cancercellmap"], [105, 0, 0, "-", "cancerdrugsdb"], [109, 0, 0, "-", "cancersea"], [111, 0, 0, "-", "cell"], [113, 0, 0, "-", "cellcall"], [118, 0, 0, "-", "cellcellinteractions"], [120, 0, 0, "-", "cellchatdb"], [126, 0, 0, "-", "cellinker"], [138, 0, 0, "-", "cellphonedb"], [145, 0, 0, "-", "celltalkdb"], [149, 0, 0, "-", "celltypist"], [151, 0, 0, "-", "chembl"], [159, 0, 0, "-", "clinvar"], [162, 0, 0, "-", "collectri"], [165, 0, 0, "-", "common"], [172, 0, 0, "-", "compath"], [174, 0, 0, "-", "compleat"], [177, 0, 0, "-", "complexportal"], [179, 0, 0, "-", "comppi"], [182, 0, 0, "-", "connectomedb"], [185, 0, 0, "-", "corum"], [187, 0, 0, "-", "cosmic"], [189, 0, 0, "-", "cpad"], [193, 0, 0, "-", "cpdb"], [196, 0, 0, "-", "credentials"], [198, 0, 0, "-", "csa"], [200, 0, 0, "-", "cspa"], [204, 0, 0, "-", "ctdbase"], [207, 0, 0, "-", "cytosig"], [210, 0, 0, "-", "dbptm"], [214, 0, 0, "-", "ddinter"], [220, 0, 0, "-", "deathdomain"], [223, 0, 0, "-", "depod"], [226, 0, 0, "-", "dgidb"], [230, 0, 0, "-", "dip"], [233, 0, 0, "-", "diseases"], [241, 0, 0, "-", "domino"], [246, 0, 0, "-", "dorothea"], [257, 0, 0, "-", "drugbank"], [264, 0, 0, "-", "drugcentral"], [268, 0, 0, "-", "ebi"], [270, 0, 0, "-", "elm"], [275, 0, 0, "-", "embopress"], [277, 0, 0, "-", "embrace"], [282, 0, 0, "-", "encode"], [284, 0, 0, "-", "ensembl"], [286, 0, 0, "-", "eutils"], [288, 0, 0, "-", "exocarta"], [291, 0, 0, "-", "expasy"], [294, 0, 0, "-", "genecards"], [298, 3, 1, "", "get_method"], [299, 0, 0, "-", "go"], [321, 0, 0, "-", "gpcrdb"], [323, 0, 0, "-", "graphviz"], [325, 0, 0, "-", "guide2pharma"], [329, 0, 0, "-", "gutmgene"], [334, 0, 0, "-", "havugimana"], [337, 0, 0, "-", "hgnc"], [339, 0, 0, "-", "hippie"], [341, 0, 0, "-", "hmdb"], [369, 0, 0, "-", "homologene"], [373, 0, 0, "-", "hpmr"], [379, 0, 0, "-", "hpo"], [384, 0, 0, "-", "hprd"], [389, 0, 0, "-", "htri"], [391, 0, 0, "-", "humancellmap"], [393, 0, 0, "-", "humap"], [396, 0, 0, "-", "humsavar"], [398, 0, 0, "-", "huri"], [411, 0, 0, "-", "i3d"], [413, 0, 0, "-", "icellnet"], [418, 0, 0, "-", "ielm"], [421, 0, 0, "-", "imweb"], [424, 0, 0, "-", "innatedb"], [426, 0, 0, "-", "instruct"], [429, 0, 0, "-", "intact"], [431, 0, 0, "-", "integrins"], [433, 0, 0, "-", "interpro"], [438, 0, 0, "-", "intogen"], [440, 0, 0, "-", "ipi"], [442, 0, 0, "-", "iptmnet"], [445, 0, 0, "-", "italk"], [449, 0, 0, "-", "kea"], [452, 0, 0, "-", "kegg"], [462, 0, 0, "-", "kegg_api"], [479, 0, 0, "-", "kinasedotcom"], [481, 0, 0, "-", "kirouac2010"], [483, 0, 0, "-", "lambert2018"], [486, 0, 0, "-", "laudanna"], [489, 0, 0, "-", "li2012"], [494, 0, 0, "-", "lincs"], [496, 0, 0, "-", "lmpid"], [500, 0, 0, "-", "lncdisease"], [502, 0, 0, "-", "lncrnadb"], [504, 0, 0, "-", "locate"], [506, 0, 0, "-", "lrdb"], [510, 0, 0, "-", "macrophage"], [512, 0, 0, "-", "main"], [513, 0, 0, "-", "matrisome"], [515, 0, 0, "-", "matrixdb"], [521, 0, 0, "-", "mcam"], [523, 0, 0, "-", "membranome"], [525, 0, 0, "-", "mimp"], [529, 0, 0, "-", "mir2disease"], [531, 0, 0, "-", "mirbase"], [539, 0, 0, "-", "mirdeathdb"], [541, 0, 0, "-", "mirecords"], [543, 0, 0, "-", "mirtarbase"], [545, 0, 0, "-", "mitab"], [548, 0, 0, "-", "mppi"], [550, 0, 0, "-", "msigdb"], [554, 0, 0, "-", "ncrdeathdb"], [556, 0, 0, "-", "negatome"], [558, 0, 0, "-", "netbiol"], [561, 0, 0, "-", "netpath"], [565, 0, 0, "-", "offsides"], [567, 0, 0, "-", "oma"], [570, 0, 0, "-", "ontology"], [573, 0, 0, "-", "opentargets"], [579, 0, 0, "-", "opm"], [581, 0, 0, "-", "oreganno"], [584, 0, 0, "-", "panglaodb"], [587, 0, 0, "-", "pathophenodb"], [590, 0, 0, "-", "pathwaycommons"], [607, 0, 0, "-", "pazar"], [609, 0, 0, "-", "pdb"], [613, 0, 0, "-", "pdzbase"], [615, 0, 0, "-", "pepcyber"], [618, 0, 0, "-", "pfam"], [623, 0, 0, "-", "pharos"], [632, 0, 0, "-", "phobius"], [634, 0, 0, "-", "phosphatome"], [636, 0, 0, "-", "phosphoelm"], [640, 0, 0, "-", "phosphonetworks"], [643, 0, 0, "-", "phosphopoint"], [646, 0, 0, "-", "phosphosite"], [659, 0, 0, "-", "pisa"], [663, 0, 0, "-", "pro"], [666, 0, 0, "-", "progeny"], [669, 0, 0, "-", "proteinatlas"], [674, 0, 0, "-", "proteins"], [676, 0, 0, "-", "protmapper"], [680, 0, 0, "-", "pubchem"], [682, 0, 0, "-", "pubmed"], [689, 0, 0, "-", "ramilowski2015"], [692, 0, 0, "-", "ramp"], [699, 0, 0, "-", "rdata"], [700, 0, 0, "-", "reaction"], [720, 0, 0, "-", "reactome"], [725, 0, 0, "-", "scconnect"], [729, 0, 0, "-", "science"], [731, 0, 0, "-", "sider"], [740, 0, 0, "-", "signalink"], [745, 0, 0, "-", "signor"], [752, 0, 0, "-", "spike"], [755, 0, 0, "-", "stitch"], [758, 0, 0, "-", "string"], [763, 0, 0, "-", "surfaceome"], [765, 0, 0, "-", "switches_elm"], [767, 0, 0, "-", "talklr"], [771, 0, 0, "-", "tcdb"], [775, 0, 0, "-", "tfcensus"], [777, 0, 0, "-", "threedcomplex"], [783, 0, 0, "-", "threedid"], [788, 0, 0, "-", "topdb"], [790, 0, 0, "-", "transmir"], [792, 0, 0, "-", "trip"], [799, 0, 0, "-", "trrust"], [803, 0, 0, "-", "twosides"], [805, 0, 0, "-", "unichem"], [810, 0, 0, "-", "uniprot"], [837, 0, 0, "-", "uniprot_db"], [846, 0, 0, "-", "wang"], [851, 0, 0, "-", "wojtowicz2020"], [854, 0, 0, "-", "zhong2015"]], "pypath.inputs.abs": [[58, 3, 1, "", "abs_interactions"]], "pypath.inputs.acsn": [[60, 3, 1, "", "acsn_interactions"], [61, 3, 1, "", "acsn_interactions_sif"]], "pypath.inputs.adhesome": [[63, 3, 1, "", "adhesome_annotations"], [64, 3, 1, "", "adhesome_interactions"]], "pypath.inputs.adrecs": [[66, 1, 1, "", "AdrecsAdr"], [67, 1, 1, "", "AdrecsChildParent"], [68, 1, 1, "", "AdrecsDrug"], [69, 1, 1, "", "AdrecsDrugAdr"], [70, 1, 1, "", "AdrecsTerm"], [71, 3, 1, "", "adrecs_adr_ontology"], [72, 3, 1, "", "adrecs_drug_adr"], [73, 3, 1, "", "adrecs_drug_identifiers"], [74, 3, 1, "", "adrecs_hierarchy"]], "pypath.inputs.adrecs.AdrecsAdr": [[66, 2, 1, "", "__init__"], [66, 4, 1, "", "adr_class"], [66, 4, 1, "", "badd"], [66, 2, 1, "", "count"], [66, 2, 1, "", "index"]], "pypath.inputs.adrecs.AdrecsChildParent": [[67, 2, 1, "", "__init__"], [67, 4, 1, "", "child"], [67, 2, 1, "", "count"], [67, 2, 1, "", "index"], [67, 4, 1, "", "parent"]], "pypath.inputs.adrecs.AdrecsDrug": [[68, 2, 1, "", "__init__"], [68, 4, 1, "", "badd"], [68, 2, 1, "", "count"], [68, 4, 1, "", "drug"], [68, 4, 1, "", "drugbank"], [68, 2, 1, "", "index"], [68, 4, 1, "", "kegg"], [68, 4, 1, "", "mesh"], [68, 4, 1, "", "pubchem_cid"], [68, 4, 1, "", "synonyms"], [68, 4, 1, "", "tdd"]], "pypath.inputs.adrecs.AdrecsDrugAdr": [[69, 2, 1, "", "__init__"], [69, 4, 1, "", "adr"], [69, 4, 1, "", "adr_badd"], [69, 2, 1, "", "count"], [69, 4, 1, "", "drug"], [69, 4, 1, "", "drug_badd"], [69, 2, 1, "", "index"]], "pypath.inputs.adrecs.AdrecsTerm": [[70, 2, 1, "", "__init__"], [70, 4, 1, "", "adrecs_class"], [70, 4, 1, "", "badd"], [70, 2, 1, "", "count"], [70, 2, 1, "", "index"], [70, 4, 1, "", "meddra"], [70, 4, 1, "", "name"], [70, 4, 1, "", "synonyms"]], "pypath.inputs.almen2009": [[76, 3, 1, "", "almen2009_annotations"]], "pypath.inputs.baccin2019": [[78, 3, 1, "", "baccin2019_annotations"], [79, 3, 1, "", "baccin2019_interactions"]], "pypath.inputs.biogps": [[81, 1, 1, "", "BiogpsDataset"], [82, 3, 1, "", "biogps_annotations"], [83, 3, 1, "", "biogps_datasets"], [84, 3, 1, "", "biogps_download"], [85, 3, 1, "", "biogps_download_all"]], "pypath.inputs.biogps.BiogpsDataset": [[81, 2, 1, "", "__init__"], [81, 2, 1, "", "count"], [81, 2, 1, "", "index"], [81, 4, 1, "", "label"], [81, 4, 1, "", "organism"], [81, 4, 1, "", "url"]], "pypath.inputs.biogrid": [[87, 3, 1, "", "biogrid_all_interactions"], [88, 3, 1, "", "biogrid_interactions"]], "pypath.inputs.biomart": [[90, 3, 1, "", "biomart_homology"], [91, 3, 1, "", "biomart_microarray"], [92, 3, 1, "", "biomart_microarray_types"], [93, 3, 1, "", "biomart_microarrays"], [94, 3, 1, "", "biomart_query"]], "pypath.inputs.biomodels": [[96, 3, 1, "", "download_single_model"], [97, 3, 1, "", "get_all_models"], [98, 3, 1, "", "get_biomodels"], [99, 3, 1, "", "get_biomodels_req"], [100, 3, 1, "", "get_single_model"]], "pypath.inputs.ca1": [[102, 3, 1, "", "ca1_interactions"]], "pypath.inputs.cancercellmap": [[104, 3, 1, "", "ccmap_interactions"]], "pypath.inputs.cancerdrugsdb": [[106, 3, 1, "", "cancerdrugsdb_annotations"], [107, 3, 1, "", "cancerdrugsdb_download"], [108, 3, 1, "", "cancerdrugsdb_interactions"]], "pypath.inputs.cancersea": [[110, 3, 1, "", "cancersea_annotations"]], "pypath.inputs.cell": [[112, 3, 1, "", "cell_supplementary"]], "pypath.inputs.cellcall": [[114, 3, 1, "", "cellcall_annotations"], [115, 3, 1, "", "cellcall_download"], [116, 3, 1, "", "cellcall_download_all"], [117, 3, 1, "", "cellcall_interactions"]], "pypath.inputs.cellcellinteractions": [[119, 3, 1, "", "cellcellinteractions_annotations"]], "pypath.inputs.cellchatdb": [[121, 3, 1, "", "cellchatdb_annotations"], [122, 3, 1, "", "cellchatdb_cofactors"], [123, 3, 1, "", "cellchatdb_complexes"], [124, 3, 1, "", "cellchatdb_download"], [125, 3, 1, "", "cellchatdb_interactions"]], "pypath.inputs.cellinker": [[127, 1, 1, "", "CellinkerInteraction"], [128, 3, 1, "", "cellinker_annotations"], [129, 3, 1, "", "cellinker_complex_annotations"], [130, 3, 1, "", "cellinker_complexes"], [131, 3, 1, "", "cellinker_complexes_raw"], [132, 3, 1, "", "cellinker_lr_interactions"], [133, 3, 1, "", "cellinker_lr_interactions_raw"], [134, 3, 1, "", "cellinker_protein_annotations"], [135, 3, 1, "", "cellinker_smol_interactions"], [136, 3, 1, "", "cellinker_smol_interactions_raw"], [137, 3, 1, "", "components_to_complex"]], "pypath.inputs.cellinker.CellinkerInteraction": [[127, 2, 1, "", "__init__"], [127, 2, 1, "", "count"], [127, 2, 1, "", "index"], [127, 4, 1, "", "ligand"], [127, 4, 1, "", "ligand_location"], [127, 4, 1, "", "pmids"], [127, 4, 1, "", "receptor"], [127, 4, 1, "", "receptor_location"], [127, 4, 1, "", "resources"], [127, 4, 1, "", "type"]], "pypath.inputs.cellphonedb": [[139, 1, 1, "", "CellPhoneDBAnnotation"], [140, 3, 1, "", "cellphonedb_complex_annotations"], [141, 3, 1, "", "cellphonedb_complexes"], [142, 3, 1, "", "cellphonedb_interactions"], [143, 3, 1, "", "cellphonedb_ligands_receptors"], [144, 3, 1, "", "cellphonedb_protein_annotations"]], "pypath.inputs.cellphonedb.CellPhoneDBAnnotation": [[139, 2, 1, "", "__init__"], [139, 2, 1, "", "count"], [139, 2, 1, "", "index"], [139, 4, 1, "", "integrin"], [139, 4, 1, "", "peripheral"], [139, 4, 1, "", "receptor"], [139, 4, 1, "", "receptor_class"], [139, 4, 1, "", "secreted"], [139, 4, 1, "", "secreted_class"], [139, 4, 1, "", "transmembrane"]], "pypath.inputs.celltalkdb": [[146, 3, 1, "", "celltalkdb_annotations"], [147, 3, 1, "", "celltalkdb_download"], [148, 3, 1, "", "celltalkdb_interactions"]], "pypath.inputs.celltypist": [[150, 3, 1, "", "celltypist_annotations"]], "pypath.inputs.chembl": [[152, 3, 1, "", "chembl_activities"], [153, 3, 1, "", "chembl_assays"], [154, 3, 1, "", "chembl_documents"], [155, 3, 1, "", "chembl_drug_indications"], [156, 3, 1, "", "chembl_mechanisms"], [157, 3, 1, "", "chembl_molecules"], [158, 3, 1, "", "chembl_targets"]], "pypath.inputs.clinvar": [[160, 3, 1, "", "clinvar_citations"], [161, 3, 1, "", "clinvar_raw"]], "pypath.inputs.collectri": [[163, 3, 1, "", "collectri_interactions"], [164, 3, 1, "", "collectri_raw"]], "pypath.inputs.common": [[166, 3, 1, "", "csv_sep_change"], [167, 3, 1, "", "glom_fields"], [168, 3, 1, "", "json_extract"], [169, 3, 1, "", "json_read"], [170, 3, 1, "", "read_table"], [171, 3, 1, "", "read_xls"]], "pypath.inputs.compath": [[173, 3, 1, "", "compath_mappings"]], "pypath.inputs.compleat": [[175, 3, 1, "", "compleat_complexes"], [176, 3, 1, "", "compleat_raw"]], "pypath.inputs.complexportal": [[178, 3, 1, "", "complexportal_complexes"]], "pypath.inputs.comppi": [[180, 3, 1, "", "comppi_interaction_locations"], [181, 3, 1, "", "comppi_locations"]], "pypath.inputs.connectomedb": [[183, 3, 1, "", "connectomedb_annotations"], [184, 3, 1, "", "connectomedb_interactions"]], "pypath.inputs.corum": [[186, 3, 1, "", "corum_complexes"]], "pypath.inputs.cosmic": [[188, 3, 1, "", "cancer_gene_census_annotations"]], "pypath.inputs.cpad": [[190, 3, 1, "", "cpad_annotations"], [191, 3, 1, "", "cpad_pathway_cancer"], [192, 3, 1, "", "get_cpad"]], "pypath.inputs.cpdb": [[194, 3, 1, "", "cpdb_interactions"], [195, 3, 1, "", "cpdb_interactions_ltp"]], "pypath.inputs.credentials": [[197, 3, 1, "", "credentials"]], "pypath.inputs.csa": [[199, 3, 1, "", "get_csa"]], "pypath.inputs.cspa": [[201, 3, 1, "", "cspa_annotations"], [202, 3, 1, "", "cspa_cell_type_annotations"], [203, 3, 1, "", "cspa_cell_types"]], "pypath.inputs.ctdbase": [[205, 3, 1, "", "ctdbase_relations"], [206, 3, 1, "", "ctdbase_vocabulary"]], "pypath.inputs.cytosig": [[208, 3, 1, "", "cytosig_annotations"], [209, 3, 1, "", "cytosig_df"]], "pypath.inputs.dbptm": [[211, 3, 1, "", "dbptm_enzyme_substrate"], [212, 3, 1, "", "dbptm_enzyme_substrate_old"], [213, 3, 1, "", "dbptm_interactions"]], "pypath.inputs.ddinter": [[215, 3, 1, "", "ddinter_drug_interactions"], [216, 3, 1, "", "ddinter_identifiers"], [217, 3, 1, "", "ddinter_interactions"], [218, 3, 1, "", "ddinter_mappings"], [219, 3, 1, "", "ddinter_n_drugs"]], "pypath.inputs.deathdomain": [[221, 3, 1, "", "deathdomain_interactions"], [222, 3, 1, "", "deathdomain_interactions_rescued"]], "pypath.inputs.depod": [[224, 3, 1, "", "depod_enzyme_substrate"], [225, 3, 1, "", "depod_interactions"]], "pypath.inputs.dgidb": [[227, 3, 1, "", "dgidb_annotations"], [228, 3, 1, "", "dgidb_interactions"], [229, 3, 1, "", "get_dgidb_old"]], "pypath.inputs.dip": [[231, 3, 1, "", "dip_interactions"], [232, 3, 1, "", "dip_login"]], "pypath.inputs.diseases": [[234, 3, 1, "", "diseases_general"], [235, 3, 1, "", "experiments_filtered"], [236, 3, 1, "", "experiments_full"], [237, 3, 1, "", "knowledge_filtered"], [238, 3, 1, "", "knowledge_full"], [239, 3, 1, "", "textmining_filtered"], [240, 3, 1, "", "textmining_full"]], "pypath.inputs.domino": [[242, 3, 1, "", "domino_ddi"], [243, 3, 1, "", "domino_enzsub"], [244, 3, 1, "", "domino_interactions"], [245, 3, 1, "", "get_domino"]], "pypath.inputs.dorothea": [[247, 1, 1, "", "DorotheaInteraction"], [248, 3, 1, "", "dorothea_full_raw"], [249, 3, 1, "", "dorothea_interactions"], [250, 3, 1, "", "dorothea_interactions_old"], [251, 3, 1, "", "dorothea_old_csv"], [252, 3, 1, "", "dorothea_rda_raw"], [253, 3, 1, "", "get_dorothea_old"], [254, 3, 1, "", "get_tfregulons"], [255, 3, 1, "", "tfregulons_interactions"], [256, 3, 1, "", "tfregulons_interactions_old"]], "pypath.inputs.dorothea.DorotheaInteraction": [[247, 2, 1, "", "__init__"], [247, 4, 1, "", "all_sources"], [247, 4, 1, "", "chipseq"], [247, 4, 1, "", "chipseq_sources"], [247, 4, 1, "", "coexp"], [247, 4, 1, "", "coexp_sources"], [247, 2, 1, "", "count"], [247, 4, 1, "", "curated"], [247, 4, 1, "", "curated_sources"], [247, 4, 1, "", "effect"], [247, 2, 1, "", "index"], [247, 4, 1, "", "kegg_pathways"], [247, 4, 1, "", "level"], [247, 4, 1, "", "predicted"], [247, 4, 1, "", "predicted_sources"], [247, 4, 1, "", "pubmed"], [247, 4, 1, "", "target"], [247, 4, 1, "", "tf"]], "pypath.inputs.drugbank": [[258, 1, 1, "", "DrugbankFull"], [259, 3, 1, "", "drugbank_annotations"], [260, 3, 1, "", "drugbank_drugs"], [261, 3, 1, "", "drugbank_interactions"], [262, 3, 1, "", "drugbank_mapping"], [263, 3, 1, "", "drugbank_raw_interactions"]], "pypath.inputs.drugbank.DrugbankFull": [[258, 2, 1, "", "__init__"], [258, 2, 1, "", "drugbank_drugs_full"], [258, 2, 1, "", "drugbank_external_ids_full"], [258, 2, 1, "", "drugbank_properties_full"], [258, 2, 1, "", "drugbank_targets_full"]], "pypath.inputs.drugcentral": [[265, 3, 1, "", "drugcentral_drugs"], [266, 3, 1, "", "drugcentral_interactions"], [267, 3, 1, "", "drugcentral_mapping"]], "pypath.inputs.ebi": [[269, 3, 1, "", "ebi_rest"]], "pypath.inputs.elm": [[271, 3, 1, "", "elm_classes"], [272, 3, 1, "", "elm_domains"], [273, 3, 1, "", "elm_instances"], [274, 3, 1, "", "elm_interactions"]], "pypath.inputs.embopress": [[276, 3, 1, "", "embopress_supplementary"]], "pypath.inputs.embrace": [[278, 3, 1, "", "embrace_annotations"], [279, 3, 1, "", "embrace_interactions"], [280, 3, 1, "", "embrace_raw"], [281, 3, 1, "", "embrace_translated"]], "pypath.inputs.encode": [[283, 3, 1, "", "encode_tf_mirna_interactions"]], "pypath.inputs.ensembl": [[285, 3, 1, "", "ensembl_organisms"]], "pypath.inputs.eutils": [[287, 3, 1, "", "esummary"]], "pypath.inputs.exocarta": [[289, 3, 1, "", "get_exocarta"], [290, 3, 1, "", "get_vesiclepedia"]], "pypath.inputs.expasy": [[292, 3, 1, "", "expasy_enzyme_classes"], [293, 3, 1, "", "expasy_enzymes"]], "pypath.inputs.genecards": [[295, 3, 1, "", "genecards_datasheet"], [296, 3, 1, "", "genecards_soup"], [297, 3, 1, "", "genecards_summaries"]], "pypath.inputs.go": [[300, 3, 1, "", "get_go_desc"], [301, 3, 1, "", "get_go_quick"], [302, 3, 1, "", "get_goslim"], [303, 3, 1, "", "go_ancestors"], [304, 3, 1, "", "go_ancestors_goose"], [305, 3, 1, "", "go_ancestors_quickgo"], [306, 3, 1, "", "go_annotations"], [307, 3, 1, "", "go_annotations_all"], [308, 3, 1, "", "go_annotations_goa"], [309, 3, 1, "", "go_annotations_goose"], [310, 3, 1, "", "go_annotations_quickgo"], [311, 3, 1, "", "go_annotations_solr"], [312, 3, 1, "", "go_annotations_uniprot"], [313, 3, 1, "", "go_descendants"], [314, 3, 1, "", "go_descendants_goose"], [315, 3, 1, "", "go_descendants_quickgo"], [316, 3, 1, "", "go_descendants_to_ancestors"], [317, 3, 1, "", "go_terms"], [318, 3, 1, "", "go_terms_goose"], [319, 3, 1, "", "go_terms_quickgo"], [320, 3, 1, "", "go_terms_solr"]], "pypath.inputs.gpcrdb": [[322, 3, 1, "", "gpcrdb_annotations"]], "pypath.inputs.graphviz": [[324, 3, 1, "", "graphviz_attrs"]], "pypath.inputs.guide2pharma": [[326, 3, 1, "", "guide2pharma_complexes"], [327, 3, 1, "", "guide2pharma_download"], [328, 3, 1, "", "guide2pharma_interactions"]], "pypath.inputs.gutmgene": [[330, 1, 1, "", "GutmgeneAnnotation"], [331, 1, 1, "", "GutmgeneRaw"], [332, 3, 1, "", "gutmgene_annotations"], [333, 3, 1, "", "gutmgene_raw"]], "pypath.inputs.gutmgene.GutmgeneAnnotation": [[330, 2, 1, "", "__init__"], [330, 4, 1, "", "classification"], [330, 2, 1, "", "count"], [330, 4, 1, "", "effect"], [330, 4, 1, "", "gut_microbiota_id"], [330, 2, 1, "", "index"], [330, 4, 1, "", "microbe_ncbi_tax_id"], [330, 4, 1, "", "microbe_taxon"], [330, 4, 1, "", "throughput"]], "pypath.inputs.gutmgene.GutmgeneRaw": [[331, 2, 1, "", "__init__"], [331, 4, 1, "", "classification"], [331, 2, 1, "", "count"], [331, 4, 1, "", "effect"], [331, 4, 1, "", "entrez"], [331, 4, 1, "", "genesymbol"], [331, 4, 1, "", "gut_microbiota_id"], [331, 2, 1, "", "index"], [331, 4, 1, "", "microbe_ncbi_tax_id"], [331, 4, 1, "", "microbe_taxon"], [331, 4, 1, "", "throughput"]], "pypath.inputs.havugimana": [[335, 3, 1, "", "get_havugimana"], [336, 3, 1, "", "havugimana_complexes"]], "pypath.inputs.hgnc": [[338, 3, 1, "", "hgnc_genegroups"]], "pypath.inputs.hippie": [[340, 3, 1, "", "hippie_interactions"]], "pypath.inputs.hmdb": [[342, 0, 0, "-", "common"], [347, 0, 0, "-", "metabolites"], [352, 0, 0, "-", "proteins"], [357, 0, 0, "-", "schema"], [362, 0, 0, "-", "structures"], [364, 0, 0, "-", "visual"], [367, 0, 0, "-", "xml"]], "pypath.inputs.hmdb.common": [[343, 3, 1, "", "iter"], [344, 3, 1, "", "mapping"], [345, 3, 1, "", "raw"], [346, 3, 1, "", "table"]], "pypath.inputs.hmdb.metabolites": [[348, 3, 1, "", "iter"], [349, 3, 1, "", "mapping"], [350, 3, 1, "", "raw"], [351, 3, 1, "", "table"]], "pypath.inputs.hmdb.proteins": [[353, 3, 1, "", "iter"], [354, 3, 1, "", "mapping"], [355, 3, 1, "", "raw"], [356, 3, 1, "", "table"]], "pypath.inputs.hmdb.schema": [[358, 0, 0, "-", "common"], [360, 0, 0, "-", "metabolites"], [361, 0, 0, "-", "proteins"]], "pypath.inputs.hmdb.schema.common": [[359, 1, 1, "", "Field"]], "pypath.inputs.hmdb.schema.common.Field": [[359, 2, 1, "", "__init__"]], "pypath.inputs.hmdb.structures": [[363, 3, 1, "", "sdf"]], "pypath.inputs.hmdb.visual": [[365, 3, 1, "", "show_structure"], [366, 3, 1, "", "structure_svg"]], "pypath.inputs.hmdb.xml": [[368, 3, 1, "", "hmdb_xml"]], "pypath.inputs.homologene": [[370, 3, 1, "", "get_homologene"], [371, 3, 1, "", "homologene_dict"], [372, 3, 1, "", "homologene_uniprot_dict"]], "pypath.inputs.hpmr": [[374, 1, 1, "", "HpmrInteraction"], [375, 3, 1, "", "get_hpmr"], [376, 3, 1, "", "hpmr_annotations"], [377, 3, 1, "", "hpmr_complexes"], [378, 3, 1, "", "hpmr_interactions"]], "pypath.inputs.hpmr.HpmrInteraction": [[374, 2, 1, "", "__init__"], [374, 2, 1, "", "count"], [374, 2, 1, "", "index"], [374, 4, 1, "", "partner"], [374, 4, 1, "", "partner_role"], [374, 4, 1, "", "receptor"], [374, 4, 1, "", "references"], [374, 4, 1, "", "unambiguous"]], "pypath.inputs.hpo": [[380, 3, 1, "", "hpo_annotations"], [381, 3, 1, "", "hpo_diseases"], [382, 3, 1, "", "hpo_ontology"], [383, 3, 1, "", "hpo_terms"]], "pypath.inputs.hprd": [[385, 3, 1, "", "get_hprd"], [386, 3, 1, "", "hprd_enzyme_substrate"], [387, 3, 1, "", "hprd_interactions"], [388, 3, 1, "", "hprd_interactions_htp"]], "pypath.inputs.htri": [[390, 3, 1, "", "htri_interactions"]], "pypath.inputs.humancellmap": [[392, 3, 1, "", "humancellmap_annotations"]], "pypath.inputs.humap": [[394, 3, 1, "", "humap2_complexes"], [395, 3, 1, "", "humap_complexes"]], "pypath.inputs.humsavar": [[397, 3, 1, "", "uniprot_variants"]], "pypath.inputs.huri": [[399, 3, 1, "", "hi_i_interactions"], [400, 3, 1, "", "hi_ii_interactions"], [401, 3, 1, "", "hi_iii_old"], [402, 3, 1, "", "hi_union_interactions"], [403, 3, 1, "", "huri_interactions"], [404, 3, 1, "", "lit_bm_13_interactions"], [405, 3, 1, "", "lit_bm_17_interactions"], [406, 3, 1, "", "lit_bm_interactions"], [407, 3, 1, "", "rolland_hi_ii_14"], [408, 3, 1, "", "vidal_hi_iii_old"], [409, 3, 1, "", "yang2016_interactions"], [410, 3, 1, "", "yu2011_interactions"]], "pypath.inputs.i3d": [[412, 3, 1, "", "get_i3d"]], "pypath.inputs.icellnet": [[414, 1, 1, "", "IcellnetRecord"], [415, 3, 1, "", "icellnet_annotations"], [416, 3, 1, "", "icellnet_complexes"], [417, 3, 1, "", "icellnet_interactions"]], "pypath.inputs.icellnet.IcellnetRecord": [[414, 2, 1, "", "__init__"], [414, 4, 1, "", "classification"], [414, 2, 1, "", "count"], [414, 4, 1, "", "family"], [414, 2, 1, "", "index"], [414, 4, 1, "", "ligand"], [414, 4, 1, "", "receptor"], [414, 4, 1, "", "references"], [414, 4, 1, "", "resources"], [414, 4, 1, "", "subfamily"]], "pypath.inputs.ielm": [[419, 3, 1, "", "get_ielm"], [420, 3, 1, "", "get_ielm_huge"]], "pypath.inputs.imweb": [[422, 3, 1, "", "get_imweb"], [423, 3, 1, "", "get_imweb_req"]], "pypath.inputs.innatedb": [[425, 3, 1, "", "innatedb_interactions"]], "pypath.inputs.instruct": [[427, 3, 1, "", "get_instruct"], [428, 3, 1, "", "get_instruct_offsets"]], "pypath.inputs.intact": [[430, 3, 1, "", "intact_interactions"]], "pypath.inputs.integrins": [[432, 3, 1, "", "get_integrins"]], "pypath.inputs.interpro": [[434, 3, 1, "", "interpro2go_annotations"], [435, 3, 1, "", "interpro_annotations"], [436, 3, 1, "", "interpro_entries"], [437, 3, 1, "", "interpro_xrefs"]], "pypath.inputs.intogen": [[439, 3, 1, "", "intogen_annotations"]], "pypath.inputs.ipi": [[441, 3, 1, "", "ipi_uniprot"]], "pypath.inputs.iptmnet": [[443, 1, 1, "", "IptmnetInteraction"], [444, 3, 1, "", "iptmnet_interactions"]], "pypath.inputs.iptmnet.IptmnetInteraction": [[443, 2, 1, "", "__init__"], [443, 2, 1, "", "count"], [443, 4, 1, "", "enzyme"], [443, 4, 1, "", "enzyme_isoform"], [443, 2, 1, "", "index"], [443, 4, 1, "", "ptm_type"], [443, 4, 1, "", "references"], [443, 4, 1, "", "resaa"], [443, 4, 1, "", "resnum"], [443, 4, 1, "", "score"], [443, 4, 1, "", "substrate"], [443, 4, 1, "", "substrate_isoform"]], "pypath.inputs.italk": [[446, 3, 1, "", "italk_annotations"], [447, 3, 1, "", "italk_interactions"], [448, 3, 1, "", "italk_raw"]], "pypath.inputs.kea": [[450, 3, 1, "", "kea_enzyme_substrate"], [451, 3, 1, "", "kea_interactions"]], "pypath.inputs.kegg": [[453, 1, 1, "", "KeggPathway"], [454, 3, 1, "", "kegg_dbget"], [455, 3, 1, "", "kegg_interactions"], [456, 3, 1, "", "kegg_medicus"], [457, 3, 1, "", "kegg_medicus_complexes"], [458, 3, 1, "", "kegg_medicus_interactions"], [459, 3, 1, "", "kegg_pathway_annotations"], [460, 3, 1, "", "kegg_pathway_annotations_pathwaycommons"], [461, 3, 1, "", "kegg_pathways"]], "pypath.inputs.kegg.KeggPathway": [[453, 2, 1, "", "__init__"], [453, 2, 1, "", "count"], [453, 2, 1, "", "index"], [453, 4, 1, "", "pathway"]], "pypath.inputs.kegg_api": [[463, 3, 1, "", "disease_to_drug"], [464, 3, 1, "", "disease_to_gene"], [465, 3, 1, "", "disease_to_pathway"], [466, 3, 1, "", "drug_to_disease"], [467, 3, 1, "", "drug_to_drug"], [468, 3, 1, "", "drug_to_gene"], [469, 3, 1, "", "drug_to_pathway"], [470, 3, 1, "", "gene_to_disease"], [471, 3, 1, "", "gene_to_drug"], [472, 3, 1, "", "gene_to_pathway"], [473, 3, 1, "", "kegg_drug_to_chebi"], [474, 3, 1, "", "kegg_gene_to_ncbi_geneid"], [475, 3, 1, "", "kegg_gene_to_uniprot"], [476, 3, 1, "", "pathway_to_disease"], [477, 3, 1, "", "pathway_to_drug"], [478, 3, 1, "", "pathway_to_gene"]], "pypath.inputs.kinasedotcom": [[480, 3, 1, "", "kinasedotcom_annotations"]], "pypath.inputs.kirouac2010": [[482, 3, 1, "", "kirouac2010_interactions"]], "pypath.inputs.lambert2018": [[484, 3, 1, "", "lambert2018_annotations"], [485, 3, 1, "", "lambert2018_s1_raw"]], "pypath.inputs.laudanna": [[487, 3, 1, "", "laudanna_directions"], [488, 3, 1, "", "laudanna_effects"]], "pypath.inputs.li2012": [[490, 3, 1, "", "get_li2012"], [491, 3, 1, "", "li2012_dmi"], [492, 3, 1, "", "li2012_enzyme_substrate"], [493, 3, 1, "", "li2012_interactions"]], "pypath.inputs.lincs": [[495, 3, 1, "", "lincs_compounds"]], "pypath.inputs.lmpid": [[497, 3, 1, "", "lmpid_dmi"], [498, 3, 1, "", "lmpid_interactions"], [499, 3, 1, "", "load_lmpid"]], "pypath.inputs.lncdisease": [[501, 3, 1, "", "lncdisease_interactions"]], "pypath.inputs.lncrnadb": [[503, 3, 1, "", "lncrnadb_interactions"]], "pypath.inputs.locate": [[505, 3, 1, "", "locate_localizations"]], "pypath.inputs.lrdb": [[507, 1, 1, "", "LrdbAnnotation"], [508, 3, 1, "", "lrdb_annotations"], [509, 3, 1, "", "lrdb_interactions"]], "pypath.inputs.lrdb.LrdbAnnotation": [[507, 2, 1, "", "__init__"], [507, 4, 1, "", "cell_type"], [507, 2, 1, "", "count"], [507, 2, 1, "", "index"], [507, 4, 1, "", "references"], [507, 4, 1, "", "role"], [507, 4, 1, "", "sources"]], "pypath.inputs.macrophage": [[511, 3, 1, "", "macrophage_interactions"]], "pypath.inputs.matrisome": [[514, 3, 1, "", "matrisome_annotations"]], "pypath.inputs.matrixdb": [[516, 3, 1, "", "matrixdb_annotations"], [517, 3, 1, "", "matrixdb_ecm_proteins"], [518, 3, 1, "", "matrixdb_interactions"], [519, 3, 1, "", "matrixdb_membrane_proteins"], [520, 3, 1, "", "matrixdb_secreted_proteins"]], "pypath.inputs.mcam": [[522, 3, 1, "", "mcam_cell_adhesion_molecules"]], "pypath.inputs.membranome": [[524, 3, 1, "", "membranome_annotations"]], "pypath.inputs.mimp": [[526, 3, 1, "", "get_kinase_class"], [527, 3, 1, "", "mimp_enzyme_substrate"], [528, 3, 1, "", "mimp_interactions"]], "pypath.inputs.mir2disease": [[530, 3, 1, "", "mir2disease_interactions"]], "pypath.inputs.mirbase": [[532, 3, 1, "", "get_mirbase_aliases"], [533, 3, 1, "", "mirbase_ids"], [534, 3, 1, "", "mirbase_mature"], [535, 3, 1, "", "mirbase_mature_all"], [536, 3, 1, "", "mirbase_precursor"], [537, 3, 1, "", "mirbase_precursor_all"], [538, 3, 1, "", "mirbase_precursor_to_mature"]], "pypath.inputs.mirdeathdb": [[540, 3, 1, "", "mirdeathdb_interactions"]], "pypath.inputs.mirecords": [[542, 3, 1, "", "mirecords_interactions"]], "pypath.inputs.mirtarbase": [[544, 3, 1, "", "mirtarbase_interactions"]], "pypath.inputs.mitab": [[546, 3, 1, "", "mitab_field_list"], [547, 3, 1, "", "mitab_field_uniprot"]], "pypath.inputs.mppi": [[549, 3, 1, "", "mppi_interactions"]], "pypath.inputs.msigdb": [[551, 3, 1, "", "msigdb_annotations"], [552, 3, 1, "", "msigdb_download"], [553, 3, 1, "", "msigdb_download_collections"]], "pypath.inputs.ncrdeathdb": [[555, 3, 1, "", "ncrdeathdb_interactions"]], "pypath.inputs.negatome": [[557, 3, 1, "", "negatome_interactions"]], "pypath.inputs.netbiol": [[559, 3, 1, "", "arn_interactions"], [560, 3, 1, "", "nrf2ome_interactions"]], "pypath.inputs.netpath": [[562, 3, 1, "", "netpath_interactions"], [563, 3, 1, "", "netpath_names"], [564, 3, 1, "", "netpath_pathway_annotations"]], "pypath.inputs.offsides": [[566, 3, 1, "", "offsides_side_effects"]], "pypath.inputs.oma": [[568, 3, 1, "", "oma_orthologs"], [569, 3, 1, "", "oma_table"]], "pypath.inputs.ontology": [[571, 3, 1, "", "listof_ontologies"], [572, 3, 1, "", "ontology"]], "pypath.inputs.opentargets": [[574, 3, 1, "", "opentargets_adverse_reactions"], [575, 3, 1, "", "opentargets_baseline_expression"], [576, 3, 1, "", "opentargets_direct_score"], [577, 3, 1, "", "opentargets_general"], [578, 3, 1, "", "opentargets_indirect_score"]], "pypath.inputs.opm": [[580, 3, 1, "", "opm_annotations"]], "pypath.inputs.oreganno": [[582, 3, 1, "", "oreganno_interactions"], [583, 3, 1, "", "oreganno_raw"]], "pypath.inputs.panglaodb": [[585, 3, 1, "", "panglaodb_annotations"], [586, 3, 1, "", "panglaodb_raw"]], "pypath.inputs.pathophenodb": [[588, 1, 1, "", "DiseasePathogen"], [589, 3, 1, "", "disease_pathogen_interactions"]], "pypath.inputs.pathophenodb.DiseasePathogen": [[588, 2, 1, "", "__init__"], [588, 2, 1, "", "count"], [588, 4, 1, "", "disease"], [588, 4, 1, "", "disease_id"], [588, 4, 1, "", "evidence"], [588, 2, 1, "", "index"], [588, 4, 1, "", "pathogen"], [588, 4, 1, "", "pathogen_taxid"]], "pypath.inputs.pathwaycommons": [[591, 1, 1, "", "PathwayCommonsInteraction"], [592, 1, 1, "", "PathwayCommonsResource"], [593, 3, 1, "", "pathwaycommons_bind_interactions"], [594, 3, 1, "", "pathwaycommons_biogrid_interactions"], [595, 3, 1, "", "pathwaycommons_corum_interactions"], [596, 3, 1, "", "pathwaycommons_dip_interactions"], [597, 3, 1, "", "pathwaycommons_hprd_interactions"], [598, 3, 1, "", "pathwaycommons_inoh_interactions"], [599, 3, 1, "", "pathwaycommons_intact_interactions"], [600, 3, 1, "", "pathwaycommons_interactions"], [601, 3, 1, "", "pathwaycommons_kegg_interactions"], [602, 3, 1, "", "pathwaycommons_netpath_interactions"], [603, 3, 1, "", "pathwaycommons_panther_interactions"], [604, 3, 1, "", "pathwaycommons_phosphosite_interactions"], [605, 3, 1, "", "pathwaycommons_reactome_interactions"], [606, 3, 1, "", "pathwaycommons_wikipathways_interactions"]], "pypath.inputs.pathwaycommons.PathwayCommonsInteraction": [[591, 2, 1, "", "__init__"], [591, 2, 1, "", "count"], [591, 4, 1, "", "id_a"], [591, 4, 1, "", "id_b"], [591, 2, 1, "", "index"], [591, 4, 1, "", "interaction_type"], [591, 4, 1, "", "resource"]], "pypath.inputs.pathwaycommons.PathwayCommonsResource": [[592, 2, 1, "", "__init__"], [592, 2, 1, "", "count"], [592, 2, 1, "", "index"], [592, 4, 1, "", "name"], [592, 4, 1, "", "pc_label"], [592, 4, 1, "", "version"]], "pypath.inputs.pazar": [[608, 3, 1, "", "pazar_interactions"]], "pypath.inputs.pdb": [[610, 3, 1, "", "pdb_chains"], [611, 3, 1, "", "pdb_complexes"], [612, 3, 1, "", "pdb_uniprot"]], "pypath.inputs.pdzbase": [[614, 3, 1, "", "pdzbase_interactions"]], "pypath.inputs.pepcyber": [[616, 3, 1, "", "pepcyber_details"], [617, 3, 1, "", "pepcyber_interactions"]], "pypath.inputs.pfam": [[619, 3, 1, "", "pfam_names"], [620, 3, 1, "", "pfam_pdb"], [621, 3, 1, "", "pfam_regions"], [622, 3, 1, "", "pfam_uniprot"]], "pypath.inputs.pharos": [[624, 3, 1, "", "pharos_diseases"], [625, 3, 1, "", "pharos_expression"], [626, 3, 1, "", "pharos_general"], [627, 3, 1, "", "pharos_gtex"], [628, 3, 1, "", "pharos_ligands"], [629, 3, 1, "", "pharos_orthologs"], [630, 3, 1, "", "pharos_targets"], [631, 3, 1, "", "pharos_xrefs"]], "pypath.inputs.phobius": [[633, 3, 1, "", "phobius_annotations"]], "pypath.inputs.phosphatome": [[635, 3, 1, "", "phosphatome_annotations"]], "pypath.inputs.phosphoelm": [[637, 3, 1, "", "phosphoelm_enzyme_substrate"], [638, 3, 1, "", "phosphoelm_interactions"], [639, 3, 1, "", "phosphoelm_kinases"]], "pypath.inputs.phosphonetworks": [[641, 3, 1, "", "phosphonetworks_enzyme_substrate"], [642, 3, 1, "", "phosphonetworks_interactions"]], "pypath.inputs.phosphopoint": [[644, 3, 1, "", "phosphopoint_directions"], [645, 3, 1, "", "phosphopoint_interactions"]], "pypath.inputs.phosphosite": [[647, 3, 1, "", "phosphosite_directions"], [648, 3, 1, "", "phosphosite_enzyme_substrate"], [649, 3, 1, "", "phosphosite_interactions"], [650, 3, 1, "", "phosphosite_interactions_all"], [651, 3, 1, "", "phosphosite_interactions_curated"], [652, 3, 1, "", "phosphosite_interactions_new"], [653, 3, 1, "", "phosphosite_interactions_noref"], [654, 3, 1, "", "phosphosite_ptm_orthology"], [655, 3, 1, "", "phosphosite_ptms"], [656, 3, 1, "", "phosphosite_regsites"], [657, 3, 1, "", "phosphosite_regsites_one_organism"], [658, 3, 1, "", "regsites_tab"]], "pypath.inputs.pisa": [[660, 1, 1, "", "PisaBond"], [661, 3, 1, "", "pisa_bonds"], [662, 3, 1, "", "pisa_interfaces"]], "pypath.inputs.pisa.PisaBond": [[660, 2, 1, "", "__init__"], [660, 4, 1, "", "chain_1"], [660, 4, 1, "", "chain_2"], [660, 2, 1, "", "count"], [660, 2, 1, "", "index"], [660, 4, 1, "", "residue_1"], [660, 4, 1, "", "residue_2"], [660, 4, 1, "", "seqnum_1"], [660, 4, 1, "", "seqnum_2"], [660, 4, 1, "", "uniprot_1"], [660, 4, 1, "", "uniprot_2"]], "pypath.inputs.pro": [[664, 3, 1, "", "get_pro"], [665, 3, 1, "", "pro_mapping"]], "pypath.inputs.progeny": [[667, 3, 1, "", "progeny_annotations"], [668, 3, 1, "", "progeny_raw"]], "pypath.inputs.proteinatlas": [[670, 3, 1, "", "get_proteinatlas"], [671, 3, 1, "", "proteinatlas_annotations"], [672, 3, 1, "", "proteinatlas_secretome_annotations"], [673, 3, 1, "", "proteinatlas_subcellular_annotations"]], "pypath.inputs.proteins": [[675, 3, 1, "", "variants"]], "pypath.inputs.protmapper": [[677, 3, 1, "", "get_protmapper"], [678, 3, 1, "", "protmapper_enzyme_substrate"], [679, 3, 1, "", "protmapper_interactions"]], "pypath.inputs.pubchem": [[681, 3, 1, "", "pubchem_mapping"]], "pypath.inputs.pubmed": [[683, 3, 1, "", "get_pmid"], [684, 3, 1, "", "get_pubmeds"], [685, 3, 1, "", "only_pmids"], [686, 3, 1, "", "open_pubmed"], [687, 3, 1, "", "pmids_dict"], [688, 3, 1, "", "pmids_list"]], "pypath.inputs.ramilowski2015": [[690, 3, 1, "", "ramilowski_interactions"], [691, 3, 1, "", "ramilowski_locations"]], "pypath.inputs.ramp": [[693, 3, 1, "", "ramp_id_types"], [694, 3, 1, "", "ramp_id_types_2"], [695, 3, 1, "", "ramp_list_tables"], [696, 3, 1, "", "ramp_mapping"], [697, 3, 1, "", "ramp_raw"], [698, 3, 1, "", "ramp_show_tables"]], "pypath.inputs.reaction": [[701, 3, 1, "", "acsn_biopax"], [702, 3, 1, "", "acsn_interactions_2"], [703, 3, 1, "", "get_acsn_effects"], [704, 3, 1, "", "get_controls"], [705, 3, 1, "", "get_interactions"], [706, 3, 1, "", "get_reactions"], [707, 3, 1, "", "get_soup"], [708, 3, 1, "", "panther_biopax"], [709, 3, 1, "", "panther_interactions"], [710, 3, 1, "", "pid_biopax"], [711, 3, 1, "", "pid_interactions"], [712, 3, 1, "", "process_complex"], [713, 3, 1, "", "process_controls"], [714, 3, 1, "", "process_reactions"], [715, 3, 1, "", "reactions_biopax"], [716, 3, 1, "", "reactome_biopax"], [717, 3, 1, "", "reactome_bs"], [718, 3, 1, "", "reactome_interactions"], [719, 3, 1, "", "reactome_sbml"]], "pypath.inputs.reactome": [[721, 3, 1, "", "reactome_chebis"], [722, 3, 1, "", "reactome_pathway_relations"], [723, 3, 1, "", "reactome_pathways"], [724, 3, 1, "", "reactome_uniprots"]], "pypath.inputs.scconnect": [[726, 3, 1, "", "scconnect_annotations"], [727, 3, 1, "", "scconnect_complexes"], [728, 3, 1, "", "scconnect_interactions"]], "pypath.inputs.science": [[730, 3, 1, "", "science_download"]], "pypath.inputs.sider": [[732, 1, 1, "", "SiderDrug"], [733, 1, 1, "", "SiderSideeffect"], [734, 1, 1, "", "SiderSideeffectMeddra"], [735, 1, 1, "", "SiderSideeffetFrequency"], [736, 3, 1, "", "sider_drug_names"], [737, 3, 1, "", "sider_meddra_side_effects"], [738, 3, 1, "", "sider_side_effect_frequencies"], [739, 3, 1, "", "sider_side_effects"]], "pypath.inputs.sider.SiderDrug": [[732, 2, 1, "", "__init__"], [732, 4, 1, "", "atc"], [732, 2, 1, "", "count"], [732, 2, 1, "", "index"], [732, 4, 1, "", "name"]], "pypath.inputs.sider.SiderSideeffect": [[733, 2, 1, "", "__init__"], [733, 2, 1, "", "count"], [733, 2, 1, "", "index"], [733, 4, 1, "", "side_effect"], [733, 4, 1, "", "umls_concept_in_meddra"], [733, 4, 1, "", "umls_concept_on_label"]], "pypath.inputs.sider.SiderSideeffectMeddra": [[734, 2, 1, "", "__init__"], [734, 4, 1, "", "cid"], [734, 2, 1, "", "count"], [734, 2, 1, "", "index"], [734, 4, 1, "", "meddra_id"], [734, 4, 1, "", "side_effect_name"]], "pypath.inputs.sider.SiderSideeffetFrequency": [[735, 2, 1, "", "__init__"], [735, 2, 1, "", "count"], [735, 4, 1, "", "frequency"], [735, 2, 1, "", "index"], [735, 4, 1, "", "side_effect"], [735, 4, 1, "", "umls_concept_in_meddra"], [735, 4, 1, "", "umls_concept_on_label"]], "pypath.inputs.signalink": [[741, 3, 1, "", "signalink_annotations"], [742, 3, 1, "", "signalink_function_annotations"], [743, 3, 1, "", "signalink_interactions"], [744, 3, 1, "", "signalink_pathway_annotations"]], "pypath.inputs.signor": [[746, 3, 1, "", "signor_complexes"], [747, 3, 1, "", "signor_enzyme_substrate"], [748, 3, 1, "", "signor_interactions"], [749, 3, 1, "", "signor_pathway_annotations"], [750, 3, 1, "", "signor_pathways"], [751, 3, 1, "", "signor_protein_families"]], "pypath.inputs.spike": [[753, 3, 1, "", "spike_complexes"], [754, 3, 1, "", "spike_interactions"]], "pypath.inputs.stitch": [[756, 3, 1, "", "stitch_actions_interactions"], [757, 3, 1, "", "stitch_links_interactions"]], "pypath.inputs.string": [[759, 3, 1, "", "string_effects"], [760, 3, 1, "", "string_links_interactions"], [761, 3, 1, "", "string_physical_interactions"], [762, 3, 1, "", "string_species"]], "pypath.inputs.surfaceome": [[764, 3, 1, "", "surfaceome_annotations"]], "pypath.inputs.switches_elm": [[766, 3, 1, "", "get_switches_elm"]], "pypath.inputs.talklr": [[768, 3, 1, "", "talklr_annotations"], [769, 3, 1, "", "talklr_interactions"], [770, 3, 1, "", "talklr_raw"]], "pypath.inputs.tcdb": [[772, 3, 1, "", "tcdb_annotations"], [773, 3, 1, "", "tcdb_classes"], [774, 3, 1, "", "tcdb_families"]], "pypath.inputs.tfcensus": [[776, 3, 1, "", "tfcensus_annotations"]], "pypath.inputs.threedcomplex": [[778, 3, 1, "", "threedcomplex_chains"], [779, 3, 1, "", "threedcomplex_complexes"], [780, 3, 1, "", "threedcomplex_contacts"], [781, 3, 1, "", "threedcomplex_ddi"], [782, 3, 1, "", "threedcomplex_nresidues"]], "pypath.inputs.threedid": [[784, 3, 1, "", "get_3did"], [785, 3, 1, "", "get_3did_ddi"], [786, 3, 1, "", "get_3did_dmi"], [787, 3, 1, "", "process_3did_dmi"]], "pypath.inputs.topdb": [[789, 3, 1, "", "topdb_annotations"]], "pypath.inputs.transmir": [[791, 3, 1, "", "transmir_interactions"]], "pypath.inputs.trip": [[793, 3, 1, "", "take_a_trip"], [794, 3, 1, "", "trip_find_uniprot"], [795, 3, 1, "", "trip_get_uniprot"], [796, 3, 1, "", "trip_interactions"], [797, 3, 1, "", "trip_process"], [798, 3, 1, "", "trip_process_table"]], "pypath.inputs.trrust": [[800, 3, 1, "", "trrust_human"], [801, 3, 1, "", "trrust_interactions"], [802, 3, 1, "", "trrust_mouse"]], "pypath.inputs.twosides": [[804, 3, 1, "", "twosides_interactions"]], "pypath.inputs.unichem": [[806, 3, 1, "", "info"], [807, 3, 1, "", "unichem_info"], [808, 3, 1, "", "unichem_mapping"], [809, 3, 1, "", "unichem_sources"]], "pypath.inputs.uniprot": [[811, 1, 1, "", "Taxon"], [812, 1, 1, "", "UniprotQuery"], [813, 1, 1, "", "UniprotRecordHistory"], [814, 3, 1, "", "deleted_uniprot_genesymbol"], [815, 3, 1, "", "get_uniprot_sec"], [816, 3, 1, "", "idmapping_idtypes"], [817, 3, 1, "", "protein_datasheet"], [818, 3, 1, "", "query_builder"], [819, 3, 1, "", "swissprot_deleted"], [820, 3, 1, "", "trembl_deleted"], [821, 3, 1, "", "uniprot_data"], [822, 3, 1, "", "uniprot_deleted"], [823, 3, 1, "", "uniprot_families"], [824, 3, 1, "", "uniprot_history"], [825, 3, 1, "", "uniprot_history_recent_datasheet"], [826, 3, 1, "", "uniprot_keywords"], [827, 3, 1, "", "uniprot_locations"], [828, 3, 1, "", "uniprot_ncbi_taxids"], [829, 3, 1, "", "uniprot_ncbi_taxids_2"], [830, 3, 1, "", "uniprot_preprocess"], [831, 3, 1, "", "uniprot_query"], [832, 3, 1, "", "uniprot_recent_version"], [833, 3, 1, "", "uniprot_taxonomy"], [834, 3, 1, "", "uniprot_tissues"], [835, 3, 1, "", "uniprot_topology"], [836, 3, 1, "", "valid_uniprot"]], "pypath.inputs.uniprot.Taxon": [[811, 2, 1, "", "__init__"], [811, 2, 1, "", "count"], [811, 4, 1, "", "english"], [811, 2, 1, "", "index"], [811, 4, 1, "", "latin"], [811, 4, 1, "", "latin_synonym"], [811, 4, 1, "", "ncbi_id"]], "pypath.inputs.uniprot.UniprotQuery": [[812, 2, 1, "", "__init__"], [812, 2, 1, "", "__iter__"], [812, 4, 1, "", "fail_on_empty"], [812, 4, 1, "", "name_process"], [812, 2, 1, "", "perform"], [812, 5, 1, "", "url"], [812, 5, 1, "", "url_plain"]], "pypath.inputs.uniprot.UniprotRecordHistory": [[813, 2, 1, "", "__init__"], [813, 2, 1, "", "count"], [813, 4, 1, "", "database"], [813, 4, 1, "", "date"], [813, 4, 1, "", "entry_name"], [813, 4, 1, "", "entry_version"], [813, 2, 1, "", "index"], [813, 4, 1, "", "number"], [813, 4, 1, "", "replaced_by"], [813, 4, 1, "", "replaces"], [813, 4, 1, "", "sequence_version"]], "pypath.inputs.uniprot_db": [[838, 3, 1, "", "all_swissprots"], [839, 3, 1, "", "all_trembls"], [840, 3, 1, "", "all_uniprots"], [841, 3, 1, "", "get_db"], [842, 3, 1, "", "init_db"], [843, 3, 1, "", "is_swissprot"], [844, 3, 1, "", "is_trembl"], [845, 3, 1, "", "is_uniprot"]], "pypath.inputs.wang": [[847, 3, 1, "", "cui_interactions"], [848, 3, 1, "", "hsn_interactions"], [849, 3, 1, "", "wang_annotations"], [850, 3, 1, "", "wang_interactions"]], "pypath.inputs.wojtowicz2020": [[852, 3, 1, "", "wojtowicz2020_interactions"], [853, 3, 1, "", "wojtowicz2020_raw"]], "pypath.inputs.zhong2015": [[855, 3, 1, "", "zhong2015_annotations"]], "pypath.internals": [[857, 0, 0, "-", "annot_formats"], [862, 0, 0, "-", "input_formats"], [876, 0, 0, "-", "intera"], [886, 0, 0, "-", "license"], [892, 0, 0, "-", "maps"], [893, 0, 0, "-", "refs"], [896, 0, 0, "-", "resource"]], "pypath.internals.annot_formats": [[858, 1, 1, "", "AnnotDef"], [859, 1, 1, "", "AnnotDefKey"], [860, 1, 1, "", "AnnotOp"], [861, 1, 1, "", "AnnotationGroup"]], "pypath.internals.annot_formats.AnnotDef": [[858, 2, 1, "", "__init__"], [858, 4, 1, "", "args"], [858, 4, 1, "", "aspect"], [858, 4, 1, "", "avoid"], [858, 2, 1, "", "count"], [858, 4, 1, "", "enabled"], [858, 4, 1, "", "exclude"], [858, 2, 1, "", "index"], [858, 4, 1, "", "limit"], [858, 4, 1, "", "name"], [858, 4, 1, "", "parent"], [858, 4, 1, "", "receiver"], [858, 4, 1, "", "resource"], [858, 4, 1, "", "resource_name"], [858, 4, 1, "", "scope"], [858, 4, 1, "", "source"], [858, 4, 1, "", "transmitter"]], "pypath.internals.annot_formats.AnnotDefKey": [[859, 2, 1, "", "__init__"], [859, 2, 1, "", "count"], [859, 2, 1, "", "index"], [859, 4, 1, "", "name"], [859, 4, 1, "", "parent"], [859, 4, 1, "", "resource"]], "pypath.internals.annot_formats.AnnotOp": [[860, 2, 1, "", "__init__"], [860, 4, 1, "", "annots"], [860, 2, 1, "", "count"], [860, 2, 1, "", "index"], [860, 4, 1, "", "op"]], "pypath.internals.annot_formats.AnnotationGroup": [[861, 2, 1, "", "__init__"], [861, 2, 1, "", "filter_entity_type"], [861, 2, 1, "", "isdisjoint"]], "pypath.internals.input_formats": [[863, 1, 1, "", "ArrayMapping"], [864, 1, 1, "", "BiomartMapping"], [865, 1, 1, "", "FileMapping"], [866, 1, 1, "", "HmdbMapping"], [867, 1, 1, "", "MappingInput"], [868, 1, 1, "", "NetworkInput"], [869, 1, 1, "", "PickleMapping"], [870, 1, 1, "", "ProMapping"], [871, 1, 1, "", "RampMapping"], [872, 1, 1, "", "ReadList"], [873, 1, 1, "", "UnichemMapping"], [874, 1, 1, "", "UniprotListMapping"], [875, 1, 1, "", "UniprotMapping"]], "pypath.internals.input_formats.ArrayMapping": [[863, 2, 1, "", "__init__"]], "pypath.internals.input_formats.BiomartMapping": [[864, 2, 1, "", "__init__"]], "pypath.internals.input_formats.FileMapping": [[865, 2, 1, "", "__init__"]], "pypath.internals.input_formats.HmdbMapping": [[866, 2, 1, "", "__init__"]], "pypath.internals.input_formats.MappingInput": [[867, 2, 1, "", "__init__"]], "pypath.internals.input_formats.NetworkInput": [[868, 2, 1, "", "__init__"]], "pypath.internals.input_formats.PickleMapping": [[869, 2, 1, "", "__init__"]], "pypath.internals.input_formats.ProMapping": [[870, 2, 1, "", "__init__"]], "pypath.internals.input_formats.RampMapping": [[871, 2, 1, "", "__init__"]], "pypath.internals.input_formats.ReadList": [[872, 2, 1, "", "__init__"]], "pypath.internals.input_formats.UnichemMapping": [[873, 2, 1, "", "__init__"]], "pypath.internals.input_formats.UniprotListMapping": [[874, 2, 1, "", "__init__"]], "pypath.internals.input_formats.UniprotMapping": [[875, 2, 1, "", "__init__"], [875, 2, 1, "", "resource_id_type"]], "pypath.internals.intera": [[877, 1, 1, "", "Complex"], [878, 1, 1, "", "Domain"], [879, 1, 1, "", "DomainDomain"], [880, 1, 1, "", "DomainMotif"], [881, 1, 1, "", "Interface"], [882, 1, 1, "", "Motif"], [883, 1, 1, "", "Ptm"], [884, 1, 1, "", "Regulation"], [885, 1, 1, "", "Residue"]], "pypath.internals.intera.Complex": [[877, 2, 1, "", "__init__"], [877, 2, 1, "", "add_attr"], [877, 2, 1, "", "merge"]], "pypath.internals.intera.Domain": [[878, 2, 1, "", "__init__"]], "pypath.internals.intera.DomainDomain": [[879, 2, 1, "", "__init__"]], "pypath.internals.intera.DomainMotif": [[880, 2, 1, "", "__init__"], [880, 2, 1, "", "get_line"], [880, 2, 1, "", "key"]], "pypath.internals.intera.Interface": [[881, 2, 1, "", "__init__"], [881, 2, 1, "", "add_residues"], [881, 2, 1, "", "bond_types"], [881, 2, 1, "", "get_bonds"], [881, 2, 1, "", "numof_residues"]], "pypath.internals.intera.Motif": [[882, 2, 1, "", "__init__"]], "pypath.internals.intera.Ptm": [[883, 2, 1, "", "__init__"]], "pypath.internals.intera.Regulation": [[884, 2, 1, "", "__init__"]], "pypath.internals.intera.Residue": [[885, 2, 1, "", "__init__"]], "pypath.internals.license": [[887, 1, 1, "", "License"], [888, 1, 1, "", "LicenseAttrib"], [889, 1, 1, "", "LicenseFeature"], [890, 1, 1, "", "LicensePurpose"], [891, 1, 1, "", "LicenseSharing"]], "pypath.internals.license.License": [[887, 2, 1, "", "__init__"], [887, 2, 1, "", "enables"]], "pypath.internals.license.LicenseAttrib": [[888, 2, 1, "", "__init__"], [888, 2, 1, "", "check_level"], [888, 2, 1, "", "int_to_level"], [888, 2, 1, "", "level_to_int"], [888, 2, 1, "", "to_int"]], "pypath.internals.license.LicenseFeature": [[889, 2, 1, "", "__init__"], [889, 2, 1, "", "check_level"], [889, 2, 1, "", "int_to_level"], [889, 2, 1, "", "level_to_int"], [889, 2, 1, "", "to_int"]], "pypath.internals.license.LicensePurpose": [[890, 2, 1, "", "__init__"], [890, 2, 1, "", "check_level"], [890, 2, 1, "", "int_to_level"], [890, 2, 1, "", "level_to_int"], [890, 2, 1, "", "to_int"]], "pypath.internals.license.LicenseSharing": [[891, 2, 1, "", "__init__"], [891, 2, 1, "", "check_level"], [891, 2, 1, "", "int_to_level"], [891, 2, 1, "", "level_to_int"], [891, 2, 1, "", "to_int"]], "pypath.internals.refs": [[894, 1, 1, "", "Reference"], [895, 3, 1, "", "get_pubmed_data"]], "pypath.internals.refs.Reference": [[894, 2, 1, "", "__init__"]], "pypath.internals.resource": [[897, 1, 1, "", "AbstractResource"], [898, 1, 1, "", "EnzymeSubstrateResource"], [899, 1, 1, "", "EnzymeSubstrateResourceKey"], [900, 1, 1, "", "NetworkDataset"], [901, 1, 1, "", "NetworkResource"], [902, 1, 1, "", "NetworkResourceKey"], [903, 1, 1, "", "ResourceAttributes"]], "pypath.internals.resource.AbstractResource": [[897, 2, 1, "", "__init__"], [897, 2, 1, "", "load_data"], [897, 2, 1, "", "process"], [897, 2, 1, "", "set_method"]], "pypath.internals.resource.EnzymeSubstrateResource": [[898, 2, 1, "", "__init__"], [898, 2, 1, "", "get_via"]], "pypath.internals.resource.EnzymeSubstrateResourceKey": [[899, 2, 1, "", "__init__"], [899, 2, 1, "", "count"], [899, 4, 1, "", "data_type"], [899, 2, 1, "", "index"], [899, 4, 1, "", "name"], [899, 4, 1, "", "via"]], "pypath.internals.resource.NetworkDataset": [[900, 2, 1, "", "__init__"], [900, 2, 1, "", "clear"], [900, 2, 1, "", "get"], [900, 2, 1, "", "items"], [900, 2, 1, "", "keys"], [900, 2, 1, "", "pop"], [900, 2, 1, "", "popitem"], [900, 2, 1, "", "setdefault"], [900, 2, 1, "", "update"], [900, 2, 1, "", "values"]], "pypath.internals.resource.NetworkResource": [[901, 2, 1, "", "__init__"]], "pypath.internals.resource.NetworkResourceKey": [[902, 2, 1, "", "__init__"], [902, 2, 1, "", "count"], [902, 4, 1, "", "data_model"], [902, 4, 1, "", "data_type"], [902, 2, 1, "", "index"], [902, 4, 1, "", "interaction_type"], [902, 5, 1, "", "label"], [902, 5, 1, "", "last"], [902, 4, 1, "", "name"], [902, 4, 1, "", "via"]], "pypath.internals.resource.ResourceAttributes": [[903, 2, 1, "", "__init__"]], "pypath.legacy": [[905, 0, 0, "-", "db_categories"]], "pypath.legacy.db_categories": [[906, 3, 1, "", "get_categories"], [907, 3, 1, "", "get_category"]], "pypath.resources": [[910, 0, 0, "-", "controller"], [912, 0, 0, "-", "data"], [913, 0, 0, "-", "data_formats"], [922, 3, 1, "", "get_controller"], [923, 0, 0, "-", "licenses"], [925, 0, 0, "-", "network"], [929, 0, 0, "-", "urls"]], "pypath.resources.controller": [[911, 1, 1, "", "ResourceController"]], "pypath.resources.controller.ResourceController": [[911, 2, 1, "", "__init__"], [911, 2, 1, "", "add_resource_attrs"], [911, 2, 1, "", "collect_interaction"], [911, 2, 1, "", "collect_network"], [911, 2, 1, "", "license_filter"], [911, 2, 1, "", "secondary_resources"], [911, 2, 1, "", "update"]], "pypath.resources.data_formats": [[914, 6, 1, "", "activity_flow"], [915, 6, 1, "", "enzyme_substrate"], [916, 6, 1, "", "interaction"], [917, 6, 1, "", "interaction_htp"], [918, 6, 1, "", "pathway_bad"], [919, 6, 1, "", "reaction_pc"], [920, 6, 1, "", "transcription_deprecated"], [921, 6, 1, "", "transcription_onebyone"]], "pypath.resources.licenses": [[924, 1, 1, "", "Licenses"]], "pypath.resources.licenses.Licenses": [[924, 2, 1, "", "__init__"]], "pypath.resources.network": [[926, 3, 1, "", "choose_dataset"], [927, 3, 1, "", "dataset_priority"], [928, 3, 1, "", "dorothea_expand_levels"]], "pypath.share": [[931, 0, 0, "-", "cache"], [936, 0, 0, "-", "common"], [937, 0, 0, "-", "constants"], [938, 0, 0, "-", "curl"], [955, 0, 0, "-", "progress"], [957, 0, 0, "-", "session"], [958, 0, 0, "-", "settings"]], "pypath.share.cache": [[932, 3, 1, "", "cache_item"], [933, 3, 1, "", "cache_path"], [934, 3, 1, "", "default_cachedir"], [935, 3, 1, "", "get_cachedir"]], "pypath.share.curl": [[939, 1, 1, "", "Curl"], [940, 1, 1, "", "FileOpener"], [941, 1, 1, "", "RemoteFile"], [942, 1, 1, "", "cache_delete_off"], [943, 1, 1, "", "cache_delete_on"], [944, 1, 1, "", "cache_off"], [945, 1, 1, "", "cache_on"], [946, 1, 1, "", "cache_print_off"], [947, 1, 1, "", "cache_print_on"], [948, 1, 1, "", "debug_off"], [949, 1, 1, "", "debug_on"], [950, 1, 1, "", "dryrun_off"], [951, 1, 1, "", "dryrun_on"], [952, 3, 1, "", "is_url"], [953, 1, 1, "", "preserve_off"], [954, 1, 1, "", "preserve_on"]], "pypath.share.curl.Curl": [[939, 2, 1, "", "__init__"], [939, 2, 1, "", "cache_path"], [939, 2, 1, "", "close"], [939, 2, 1, "", "construct_binary_data"], [939, 2, 1, "", "extract"], [939, 2, 1, "", "is_quoted"], [939, 2, 1, "", "open"], [939, 2, 1, "", "open_tgz"], [939, 2, 1, "", "replace_forbidden"], [939, 2, 1, "", "set_binary_data"], [939, 2, 1, "", "url_fix"]], "pypath.share.curl.FileOpener": [[940, 2, 1, "", "__init__"], [940, 2, 1, "", "extract"], [940, 2, 1, "", "open"], [940, 2, 1, "", "open_tgz"]], "pypath.share.curl.RemoteFile": [[941, 2, 1, "", "__init__"]], "pypath.share.curl.cache_delete_off": [[942, 2, 1, "", "__init__"]], "pypath.share.curl.cache_delete_on": [[943, 2, 1, "", "__init__"]], "pypath.share.curl.cache_off": [[944, 2, 1, "", "__init__"]], "pypath.share.curl.cache_on": [[945, 2, 1, "", "__init__"]], "pypath.share.curl.cache_print_off": [[946, 2, 1, "", "__init__"]], "pypath.share.curl.cache_print_on": [[947, 2, 1, "", "__init__"]], "pypath.share.curl.debug_off": [[948, 2, 1, "", "__init__"]], "pypath.share.curl.debug_on": [[949, 2, 1, "", "__init__"]], "pypath.share.curl.dryrun_off": [[950, 2, 1, "", "__init__"]], "pypath.share.curl.dryrun_on": [[951, 2, 1, "", "__init__"]], "pypath.share.curl.preserve_off": [[953, 2, 1, "", "__init__"]], "pypath.share.curl.preserve_on": [[954, 2, 1, "", "__init__"]], "pypath.share.progress": [[956, 1, 1, "", "Progress"]], "pypath.share.progress.Progress": [[956, 2, 1, "", "__init__"], [956, 2, 1, "", "get_desc"], [956, 2, 1, "", "init_tqdm"], [956, 2, 1, "", "set_done"], [956, 2, 1, "", "set_status"], [956, 2, 1, "", "set_total"], [956, 2, 1, "", "step"], [956, 2, 1, "", "terminate"]], "pypath.utils": [[960, 0, 0, "-", "go"], [968, 0, 0, "-", "mapping"], [987, 0, 0, "-", "metabo"], [988, 0, 0, "-", "orthology"], [1009, 0, 0, "-", "pdb"], [1014, 0, 0, "-", "proteomicsdb"], [1016, 0, 0, "-", "pyreact"], [1031, 0, 0, "-", "reflists"], [1039, 0, 0, "-", "residues"], [1041, 0, 0, "-", "seq"], [1048, 0, 0, "-", "taxonomy"], [1063, 0, 0, "-", "unichem"]], "pypath.utils.go": [[961, 1, 1, "", "GOAnnotation"], [962, 1, 1, "", "GOCustomAnnotation"], [963, 1, 1, "", "GeneOntology"], [964, 3, 1, "", "annotate"], [965, 3, 1, "", "get_db"], [966, 3, 1, "", "init_db"], [967, 3, 1, "", "load_go"]], "pypath.utils.go.GOAnnotation": [[961, 2, 1, "", "__init__"], [961, 2, 1, "", "all_uniprots"], [961, 2, 1, "", "expr_names_to_terms"], [961, 2, 1, "", "get_annot"], [961, 2, 1, "", "get_annot_ancestors"], [961, 2, 1, "", "get_annots"], [961, 2, 1, "", "get_annots_ancestors"], [961, 2, 1, "", "get_name"], [961, 2, 1, "", "get_term"], [961, 2, 1, "", "has_any_term"], [961, 2, 1, "", "has_term"], [961, 2, 1, "", "i_select_by_term"], [961, 2, 1, "", "reload"], [961, 2, 1, "", "select"], [961, 2, 1, "", "select_by_all"], [961, 2, 1, "", "select_by_expr"], [961, 2, 1, "", "select_by_expr_terms"], [961, 2, 1, "", "select_by_name"], [961, 2, 1, "", "select_by_term"]], "pypath.utils.go.GOCustomAnnotation": [[962, 2, 1, "", "__init__"], [962, 2, 1, "", "get_annotation"], [962, 2, 1, "", "get_annotations"], [962, 2, 1, "", "process_categories"], [962, 2, 1, "", "reload"]], "pypath.utils.go.GeneOntology": [[963, 2, 1, "", "__init__"], [963, 2, 1, "", "all_from_aspect"], [963, 2, 1, "", "aspect_from_name"], [963, 2, 1, "", "flatten"], [963, 2, 1, "", "get_all_ancestors"], [963, 2, 1, "", "get_all_descendants"], [963, 2, 1, "", "get_aspect"], [963, 2, 1, "", "get_name"], [963, 2, 1, "", "get_term"], [963, 2, 1, "", "highest"], [963, 2, 1, "", "is_leaf"], [963, 2, 1, "", "is_name"], [963, 2, 1, "", "is_root"], [963, 2, 1, "", "is_term"], [963, 2, 1, "", "lowest"], [963, 2, 1, "", "names_to_terms"], [963, 2, 1, "", "names_to_terms_aspects"], [963, 2, 1, "", "reload"], [963, 2, 1, "", "set_of"], [963, 2, 1, "", "set_of_names"], [963, 2, 1, "", "set_of_terms"], [963, 2, 1, "", "subgraph_nodes"], [963, 2, 1, "", "terms_to_names"], [963, 2, 1, "", "terms_to_names_aspects"]], "pypath.utils.mapping": [[969, 1, 1, "", "MapReader"], [970, 1, 1, "", "Mapper"], [971, 1, 1, "", "MappingTable"], [972, 1, 1, "", "MappingTableKey"], [973, 6, 1, "", "UNIPROT_ID_TYPES"], [974, 3, 1, "", "get_mapper"], [975, 3, 1, "", "guess_type"], [976, 3, 1, "", "id_from_label"], [977, 3, 1, "", "id_from_label0"], [978, 3, 1, "", "id_types"], [979, 3, 1, "", "init"], [980, 3, 1, "", "label"], [981, 3, 1, "", "map_name"], [982, 3, 1, "", "map_name0"], [983, 3, 1, "", "map_names"], [984, 3, 1, "", "mapping_tables"], [985, 3, 1, "", "translation_df"], [986, 3, 1, "", "translation_dict"]], "pypath.utils.mapping.MapReader": [[969, 2, 1, "", "__init__"], [969, 2, 1, "", "id_type_side"], [969, 2, 1, "", "load"], [969, 5, 1, "", "mapping_table_a_to_b"], [969, 5, 1, "", "mapping_table_b_to_a"], [969, 2, 1, "", "read"], [969, 2, 1, "", "read_cache"], [969, 2, 1, "", "read_mapping_array"], [969, 2, 1, "", "read_mapping_biomart"], [969, 2, 1, "", "read_mapping_file"], [969, 2, 1, "", "read_mapping_hmdb"], [969, 2, 1, "", "read_mapping_ramp"], [969, 2, 1, "", "read_mapping_unichem"], [969, 2, 1, "", "read_mapping_uniprot"], [969, 2, 1, "", "read_mapping_uniprot_list"], [969, 2, 1, "", "resource_id_type"], [969, 2, 1, "", "set_uniprot_space"], [969, 2, 1, "", "setup_cache"], [969, 2, 1, "", "tables_loaded"], [969, 2, 1, "", "write_cache"]], "pypath.utils.mapping.Mapper": [[970, 2, 1, "", "__init__"], [970, 2, 1, "", "chain_map"], [970, 2, 1, "", "create_reverse"], [970, 2, 1, "", "get_table_key"], [970, 2, 1, "", "guess_type"], [970, 2, 1, "", "has_mapping_table"], [970, 2, 1, "", "id_types"], [970, 2, 1, "", "identifier"], [970, 2, 1, "", "label"], [970, 2, 1, "", "load_genesymbol5"], [970, 2, 1, "", "load_mapping"], [970, 2, 1, "", "load_uniprot_static"], [970, 2, 1, "", "map_name"], [970, 2, 1, "", "map_name0"], [970, 2, 1, "", "map_names"], [970, 2, 1, "", "mapping_tables"], [970, 2, 1, "", "only_uniprot_ac"], [970, 2, 1, "", "other_organism_uniprot"], [970, 2, 1, "", "primary_uniprot"], [970, 2, 1, "", "reload"], [970, 2, 1, "", "remove_expired"], [970, 2, 1, "", "remove_key"], [970, 2, 1, "", "remove_table"], [970, 2, 1, "", "reverse_key"], [970, 2, 1, "", "reverse_mapping"], [970, 2, 1, "", "swissprots"], [970, 2, 1, "", "translate_deleted_uniprot_by_genesymbol"], [970, 2, 1, "", "translation_df"], [970, 2, 1, "", "translation_dict"], [970, 2, 1, "", "trembl_swissprot"], [970, 2, 1, "", "uniprot_cleanup"], [970, 2, 1, "", "valid_uniprot"], [970, 2, 1, "", "which_table"]], "pypath.utils.mapping.MappingTable": [[971, 2, 1, "", "__init__"], [971, 2, 1, "", "get_key"]], "pypath.utils.mapping.MappingTableKey": [[972, 2, 1, "", "__init__"], [972, 2, 1, "", "count"], [972, 4, 1, "", "id_type"], [972, 2, 1, "", "index"], [972, 4, 1, "", "ncbi_tax_id"], [972, 4, 1, "", "target_id_type"]], "pypath.utils.orthology": [[989, 1, 1, "", "EnsemblOrtholog"], [990, 1, 1, "", "EnsemblOrthology"], [991, 1, 1, "", "HomologeneOrtholog"], [992, 1, 1, "", "HomologeneOrthology"], [993, 1, 1, "", "OmaOrtholog"], [994, 1, 1, "", "OmaOrthology"], [995, 1, 1, "", "OrthologBase"], [996, 1, 1, "", "OrthologMeta"], [997, 1, 1, "", "OrthologyManager"], [998, 1, 1, "", "OrthologyTableKey"], [999, 1, 1, "", "ProteinOrthology"], [1000, 1, 1, "", "Proteomes"], [1001, 1, 1, "", "PtmOrthology"], [1002, 1, 1, "", "SequenceContainer"], [1003, 3, 1, "", "get_df"], [1004, 3, 1, "", "get_dict"], [1005, 3, 1, "", "get_manager"], [1006, 3, 1, "", "init"], [1007, 3, 1, "", "translate"], [1008, 3, 1, "", "translate_df"]], "pypath.utils.orthology.EnsemblOrtholog": [[989, 2, 1, "", "__init__"], [989, 2, 1, "", "count"], [989, 4, 1, "", "hc"], [989, 4, 1, "", "id"], [989, 2, 1, "", "index"], [989, 4, 1, "", "types"]], "pypath.utils.orthology.EnsemblOrthology": [[990, 2, 1, "", "__init__"], [990, 2, 1, "", "asdict"], [990, 2, 1, "", "df"], [990, 2, 1, "", "match"], [990, 2, 1, "", "translate"], [990, 2, 1, "", "translate_df"]], "pypath.utils.orthology.HomologeneOrtholog": [[991, 2, 1, "", "__init__"], [991, 2, 1, "", "count"], [991, 4, 1, "", "id"], [991, 2, 1, "", "index"]], "pypath.utils.orthology.HomologeneOrthology": [[992, 2, 1, "", "__init__"], [992, 2, 1, "", "asdict"], [992, 2, 1, "", "df"], [992, 2, 1, "", "load"], [992, 2, 1, "", "translate"], [992, 2, 1, "", "translate_df"]], "pypath.utils.orthology.OmaOrtholog": [[993, 2, 1, "", "__init__"], [993, 2, 1, "", "count"], [993, 4, 1, "", "id"], [993, 2, 1, "", "index"], [993, 4, 1, "", "rel_type"], [993, 4, 1, "", "score"]], "pypath.utils.orthology.OmaOrthology": [[994, 2, 1, "", "__init__"], [994, 2, 1, "", "asdict"], [994, 2, 1, "", "df"], [994, 2, 1, "", "match"], [994, 2, 1, "", "translate"], [994, 2, 1, "", "translate_df"]], "pypath.utils.orthology.OrthologBase": [[995, 2, 1, "", "__init__"]], "pypath.utils.orthology.OrthologMeta": [[996, 2, 1, "", "__init__"], [996, 2, 1, "", "mro"], [996, 2, 1, "", "register"]], "pypath.utils.orthology.OrthologyManager": [[997, 2, 1, "", "__init__"], [997, 2, 1, "", "get_df"], [997, 2, 1, "", "get_dict"], [997, 2, 1, "", "translate"], [997, 2, 1, "", "translate_df"]], "pypath.utils.orthology.OrthologyTableKey": [[998, 2, 1, "", "__init__"], [998, 2, 1, "", "count"], [998, 4, 1, "", "id_type"], [998, 2, 1, "", "index"], [998, 4, 1, "", "only_swissprot"], [998, 4, 1, "", "resource"], [998, 4, 1, "", "source"], [998, 4, 1, "", "target"]], "pypath.utils.orthology.ProteinOrthology": [[999, 2, 1, "", "__init__"], [999, 2, 1, "", "asdict"], [999, 2, 1, "", "df"], [999, 2, 1, "", "translate"], [999, 2, 1, "", "translate_df"]], "pypath.utils.orthology.Proteomes": [[1000, 2, 1, "", "__init__"]], "pypath.utils.orthology.PtmOrthology": [[1001, 2, 1, "", "__init__"], [1001, 2, 1, "", "ptm_orthology"], [1001, 2, 1, "", "translate"], [1001, 2, 1, "", "translate_site"]], "pypath.utils.orthology.SequenceContainer": [[1002, 2, 1, "", "__init__"]], "pypath.utils.pdb": [[1010, 1, 1, "", "Residue"], [1011, 1, 1, "", "ResidueMapper"], [1012, 1, 1, "", "Segment"], [1013, 3, 1, "", "residue_pdb"]], "pypath.utils.pdb.Residue": [[1010, 2, 1, "", "__init__"], [1010, 4, 1, "", "chain"], [1010, 2, 1, "", "count"], [1010, 2, 1, "", "index"], [1010, 4, 1, "", "offset"], [1010, 4, 1, "", "resnum"], [1010, 4, 1, "", "uniprot"]], "pypath.utils.pdb.ResidueMapper": [[1011, 2, 1, "", "__init__"], [1011, 2, 1, "", "clean"], [1011, 2, 1, "", "get_residue"], [1011, 2, 1, "", "load_mapping"]], "pypath.utils.pdb.Segment": [[1012, 2, 1, "", "__init__"], [1012, 2, 1, "", "count"], [1012, 2, 1, "", "index"], [1012, 4, 1, "", "pdb_end"], [1012, 4, 1, "", "pdb_start"], [1012, 4, 1, "", "uniprot"], [1012, 4, 1, "", "uniprot_end"], [1012, 4, 1, "", "uniprot_start"]], "pypath.utils.proteomicsdb": [[1015, 1, 1, "", "ProteomicsDB"]], "pypath.utils.proteomicsdb.ProteomicsDB": [[1015, 2, 1, "", "__init__"], [1015, 2, 1, "", "get_expression"], [1015, 2, 1, "", "get_pieces"], [1015, 2, 1, "", "get_proteins"], [1015, 2, 1, "", "get_tissues"], [1015, 2, 1, "", "pandas_matrix"], [1015, 2, 1, "", "query"], [1015, 2, 1, "", "tissues_x_proteins"]], "pypath.utils.pyreact": [[1017, 1, 1, "", "AttributeHandler"], [1018, 1, 1, "", "BioPaxReader"], [1019, 1, 1, "", "Complex"], [1020, 1, 1, "", "ComplexVariations"], [1021, 1, 1, "", "Control"], [1022, 1, 1, "", "Entity"], [1023, 1, 1, "", "EntitySet"], [1024, 1, 1, "", "Intersecting"], [1025, 1, 1, "", "Protein"], [1026, 1, 1, "", "ProteinFamily"], [1027, 1, 1, "", "PyReact"], [1028, 1, 1, "", "Reaction"], [1029, 1, 1, "", "ReactionSide"], [1030, 1, 1, "", "Reference"]], "pypath.utils.pyreact.AttributeHandler": [[1017, 2, 1, "", "__init__"]], "pypath.utils.pyreact.BioPaxReader": [[1018, 2, 1, "", "__init__"], [1018, 2, 1, "", "biopax_size"], [1018, 2, 1, "", "cleanup_hook"], [1018, 2, 1, "", "close_biopax"], [1018, 2, 1, "", "extract"], [1018, 2, 1, "", "init_etree"], [1018, 2, 1, "", "iterate"], [1018, 2, 1, "", "open_biopax"], [1018, 2, 1, "", "process"], [1018, 2, 1, "", "set_progress"]], "pypath.utils.pyreact.Complex": [[1019, 2, 1, "", "__init__"]], "pypath.utils.pyreact.ComplexVariations": [[1020, 2, 1, "", "__init__"], [1020, 2, 1, "", "itermembers"]], "pypath.utils.pyreact.Control": [[1021, 2, 1, "", "__init__"]], "pypath.utils.pyreact.Entity": [[1022, 2, 1, "", "__init__"], [1022, 2, 1, "", "expand"]], "pypath.utils.pyreact.EntitySet": [[1023, 2, 1, "", "__init__"]], "pypath.utils.pyreact.Intersecting": [[1024, 2, 1, "", "__init__"]], "pypath.utils.pyreact.Protein": [[1025, 2, 1, "", "__init__"], [1025, 2, 1, "", "expand"]], "pypath.utils.pyreact.ProteinFamily": [[1026, 2, 1, "", "__init__"]], "pypath.utils.pyreact.PyReact": [[1027, 2, 1, "", "__init__"], [1027, 2, 1, "", "gen_cvariations"], [1027, 2, 1, "", "in_same_component"], [1027, 2, 1, "", "merge_complexes"], [1027, 2, 1, "", "merge_cvariations"]], "pypath.utils.pyreact.Reaction": [[1028, 2, 1, "", "__init__"]], "pypath.utils.pyreact.ReactionSide": [[1029, 2, 1, "", "__init__"], [1029, 2, 1, "", "expand"]], "pypath.utils.pyreact.Reference": [[1030, 2, 1, "", "__init__"], [1030, 2, 1, "", "expand"]], "pypath.utils.reflists": [[1032, 1, 1, "", "ReferenceListManager"], [1033, 3, 1, "", "check"], [1034, 3, 1, "", "get_manager"], [1035, 3, 1, "", "get_reflist"], [1036, 3, 1, "", "init"], [1037, 3, 1, "", "is_not"], [1038, 3, 1, "", "select"]], "pypath.utils.reflists.ReferenceListManager": [[1032, 2, 1, "", "__init__"], [1032, 2, 1, "", "check"], [1032, 2, 1, "", "is_not"], [1032, 2, 1, "", "select"]], "pypath.utils.residues": [[1040, 1, 1, "", "ResidueMapper"]], "pypath.utils.residues.ResidueMapper": [[1040, 2, 1, "", "__init__"], [1040, 2, 1, "", "clean"]], "pypath.utils.seq": [[1042, 1, 1, "", "Pfam"], [1043, 1, 1, "", "Resource"], [1044, 1, 1, "", "Seq"], [1045, 3, 1, "", "get_isoforms"], [1046, 3, 1, "", "read_fasta"], [1047, 3, 1, "", "swissprot_seq"]], "pypath.utils.seq.Pfam": [[1042, 2, 1, "", "__init__"], [1042, 2, 1, "", "iterdb"], [1042, 2, 1, "", "iterprotein"], [1042, 2, 1, "", "load"], [1042, 2, 1, "", "processor"], [1042, 2, 1, "", "unload"]], "pypath.utils.seq.Resource": [[1043, 2, 1, "", "__init__"], [1043, 2, 1, "", "iterdb"], [1043, 2, 1, "", "iterprotein"], [1043, 2, 1, "", "load"], [1043, 2, 1, "", "processor"], [1043, 2, 1, "", "unload"]], "pypath.utils.seq.Seq": [[1044, 2, 1, "", "__init__"], [1044, 2, 1, "", "findall"]], "pypath.utils.taxonomy": [[1049, 3, 1, "", "ensure_common_name"], [1050, 3, 1, "", "ensure_ensembl_name"], [1051, 3, 1, "", "ensure_latin_name"], [1052, 3, 1, "", "ensure_ncbi_tax_id"], [1053, 3, 1, "", "get_db"], [1054, 3, 1, "", "init_db"], [1055, 3, 1, "", "short_latin_names"], [1056, 3, 1, "", "shorten_latin_name"], [1057, 3, 1, "", "taxid_from_common_name"], [1058, 3, 1, "", "taxid_from_dbptm_taxon_name"], [1059, 3, 1, "", "taxid_from_ensembl_name"], [1060, 3, 1, "", "taxid_from_latin_name"], [1061, 3, 1, "", "taxid_from_nonstandard"], [1062, 3, 1, "", "uniprot_taxid"]], "pypath.utils.unichem": [[1064, 1, 1, "", "Unichem"]], "pypath.utils.unichem.Unichem": [[1064, 2, 1, "", "__init__"], [1064, 2, 1, "", "connectivity_search"], [1064, 2, 1, "", "inchikey2anything"], [1064, 2, 1, "", "info"], [1064, 2, 1, "", "smiles2chembl"], [1064, 2, 1, "", "translate"], [1064, 2, 1, "", "usage"]], "pypath.visual": [[1066, 0, 0, "-", "drawing"], [1069, 0, 0, "-", "igraph_drawing"]], "pypath.visual.drawing": [[1067, 1, 1, "", "InterSet"], [1068, 1, 1, "", "Plot"]], "pypath.visual.drawing.InterSet": [[1067, 2, 1, "", "__init__"], [1067, 2, 1, "", "draw"]], "pypath.visual.drawing.Plot": [[1068, 2, 1, "", "__init__"]], "pypath.visual.igraph_drawing": [[1070, 1, 1, "", "AbstractCairoGraphDrawer"], [1071, 4, 1, "", "ArrowEdgeDrawer"], [1072, 1, 1, "", "DefaultGraphDrawerFFsupport"], [1073, 4, 1, "", "DefaultVertexDrawer"], [1074, 4, 1, "", "TextDrawer"], [1075, 0, 0, "-", "edge"], [1082, 0, 0, "-", "vertex"]], "pypath.visual.igraph_drawing.AbstractCairoGraphDrawer": [[1070, 2, 1, "", "__init__"]], "pypath.visual.igraph_drawing.DefaultGraphDrawerFFsupport": [[1072, 2, 1, "", "__init__"]], "pypath.visual.igraph_drawing.edge": [[1076, 1, 1, "", "AbstractEdgeDrawer"], [1077, 1, 1, "", "AlphaVaryingEdgeDrawer"], [1078, 1, 1, "", "ArrowEdgeDrawer"], [1079, 1, 1, "", "DarkToLightEdgeDrawer"], [1080, 1, 1, "", "LightToDarkEdgeDrawer"], [1081, 1, 1, "", "TaperedEdgeDrawer"]], "pypath.visual.igraph_drawing.edge.AbstractEdgeDrawer": [[1076, 2, 1, "", "__init__"], [1076, 2, 1, "", "draw_directed_edge"], [1076, 2, 1, "", "draw_loop_edge"], [1076, 2, 1, "", "draw_undirected_edge"], [1076, 2, 1, "", "get_label_position"]], "pypath.visual.igraph_drawing.edge.AlphaVaryingEdgeDrawer": [[1077, 2, 1, "", "__init__"], [1077, 2, 1, "", "draw_directed_edge"], [1077, 2, 1, "", "draw_loop_edge"], [1077, 2, 1, "", "draw_undirected_edge"], [1077, 2, 1, "", "get_label_position"]], "pypath.visual.igraph_drawing.edge.ArrowEdgeDrawer": [[1078, 2, 1, "", "__init__"], [1078, 2, 1, "", "draw_directed_edge"], [1078, 2, 1, "", "draw_loop_edge"], [1078, 2, 1, "", "draw_undirected_edge"], [1078, 2, 1, "", "get_label_position"]], "pypath.visual.igraph_drawing.edge.DarkToLightEdgeDrawer": [[1079, 2, 1, "", "__init__"], [1079, 2, 1, "", "draw_directed_edge"], [1079, 2, 1, "", "draw_loop_edge"], [1079, 2, 1, "", "draw_undirected_edge"], [1079, 2, 1, "", "get_label_position"]], "pypath.visual.igraph_drawing.edge.LightToDarkEdgeDrawer": [[1080, 2, 1, "", "__init__"], [1080, 2, 1, "", "draw_directed_edge"], [1080, 2, 1, "", "draw_loop_edge"], [1080, 2, 1, "", "draw_undirected_edge"], [1080, 2, 1, "", "get_label_position"]], "pypath.visual.igraph_drawing.edge.TaperedEdgeDrawer": [[1081, 2, 1, "", "__init__"], [1081, 2, 1, "", "draw_directed_edge"], [1081, 2, 1, "", "draw_loop_edge"], [1081, 2, 1, "", "draw_undirected_edge"], [1081, 2, 1, "", "get_label_position"]], "pypath.visual.igraph_drawing.vertex": [[1083, 1, 1, "", "AbstractCairoDrawer"], [1084, 1, 1, "", "AbstractCairoVertexDrawer"], [1085, 1, 1, "", "AbstractDrawer"], [1086, 1, 1, "", "AbstractVertexDrawer"], [1087, 1, 1, "", "DefaultVertexDrawer"]], "pypath.visual.igraph_drawing.vertex.AbstractCairoDrawer": [[1083, 2, 1, "", "__init__"]], "pypath.visual.igraph_drawing.vertex.AbstractCairoVertexDrawer": [[1084, 2, 1, "", "__init__"], [1084, 2, 1, "", "draw"]], "pypath.visual.igraph_drawing.vertex.AbstractDrawer": [[1085, 2, 1, "", "__init__"]], "pypath.visual.igraph_drawing.vertex.AbstractVertexDrawer": [[1086, 2, 1, "", "__init__"], [1086, 2, 1, "", "draw"]], "pypath.visual.igraph_drawing.vertex.DefaultVertexDrawer": [[1087, 2, 1, "", "__init__"], [1087, 2, 1, "", "draw"]]}, "objtypes": {"0": "py:module", "1": "py:class", "2": "py:method", "3": "py:function", "4": "py:attribute", "5": "py:property", "6": "py:data"}, "objnames": {"0": ["py", "module", "Python module"], "1": ["py", "class", "Python class"], "2": ["py", "method", "Python method"], "3": ["py", "function", "Python function"], "4": ["py", "attribute", "Python attribute"], "5": ["py", "property", "Python property"], "6": ["py", "data", "Python data"]}, "titleterms": {"pypath": [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142, 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, 153, 154, 155, 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, 168, 169, 170, 171, 172, 173, 174, 175, 176, 177, 178, 179, 180, 181, 182, 183, 184, 185, 186, 187, 188, 189, 190, 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207, 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220, 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233, 234, 235, 236, 237, 238, 239, 240, 241, 242, 243, 244, 245, 246, 247, 248, 249, 250, 251, 252, 253, 254, 255, 256, 257, 258, 259, 260, 261, 262, 263, 264, 265, 266, 267, 268, 269, 270, 271, 272, 273, 274, 275, 276, 277, 278, 279, 280, 281, 282, 283, 284, 285, 286, 287, 288, 289, 290, 291, 292, 293, 294, 295, 296, 297, 298, 299, 300, 301, 302, 303, 304, 305, 306, 307, 308, 309, 310, 311, 312, 313, 314, 315, 316, 317, 318, 319, 320, 321, 322, 323, 324, 325, 326, 327, 328, 329, 330, 331, 332, 333, 334, 335, 336, 337, 338, 339, 340, 341, 342, 343, 344, 345, 346, 347, 348, 349, 350, 351, 352, 353, 354, 355, 356, 357, 358, 359, 360, 361, 362, 363, 364, 365, 366, 367, 368, 369, 370, 371, 372, 373, 374, 375, 376, 377, 378, 379, 380, 381, 382, 383, 384, 385, 386, 387, 388, 389, 390, 391, 392, 393, 394, 395, 396, 397, 398, 399, 400, 401, 402, 403, 404, 405, 406, 407, 408, 409, 410, 411, 412, 413, 414, 415, 416, 417, 418, 419, 420, 421, 422, 423, 424, 425, 426, 427, 428, 429, 430, 431, 432, 433, 434, 435, 436, 437, 438, 439, 440, 441, 442, 443, 444, 445, 446, 447, 448, 449, 450, 451, 452, 453, 454, 455, 456, 457, 458, 459, 460, 461, 462, 463, 464, 465, 466, 467, 468, 469, 470, 471, 472, 473, 474, 475, 476, 477, 478, 479, 480, 481, 482, 483, 484, 485, 486, 487, 488, 489, 490, 491, 492, 493, 494, 495, 496, 497, 498, 499, 500, 501, 502, 503, 504, 505, 506, 507, 508, 509, 510, 511, 512, 513, 514, 515, 516, 517, 518, 519, 520, 521, 522, 523, 524, 525, 526, 527, 528, 529, 530, 531, 532, 533, 534, 535, 536, 537, 538, 539, 540, 541, 542, 543, 544, 545, 546, 547, 548, 549, 550, 551, 552, 553, 554, 555, 556, 557, 558, 559, 560, 561, 562, 563, 564, 565, 566, 567, 568, 569, 570, 571, 572, 573, 574, 575, 576, 577, 578, 579, 580, 581, 582, 583, 584, 585, 586, 587, 588, 589, 590, 591, 592, 593, 594, 595, 596, 597, 598, 599, 600, 601, 602, 603, 604, 605, 606, 607, 608, 609, 610, 611, 612, 613, 614, 615, 616, 617, 618, 619, 620, 621, 622, 623, 624, 625, 626, 627, 628, 629, 630, 631, 632, 633, 634, 635, 636, 637, 638, 639, 640, 641, 642, 643, 644, 645, 646, 647, 648, 649, 650, 651, 652, 653, 654, 655, 656, 657, 658, 659, 660, 661, 662, 663, 664, 665, 666, 667, 668, 669, 670, 671, 672, 673, 674, 675, 676, 677, 678, 679, 680, 681, 682, 683, 684, 685, 686, 687, 688, 689, 690, 691, 692, 693, 694, 695, 696, 697, 698, 699, 700, 701, 702, 703, 704, 705, 706, 707, 708, 709, 710, 711, 712, 713, 714, 715, 716, 717, 718, 719, 720, 721, 722, 723, 724, 725, 726, 727, 728, 729, 730, 731, 732, 733, 734, 735, 736, 737, 738, 739, 740, 741, 742, 743, 744, 745, 746, 747, 748, 749, 750, 751, 752, 753, 754, 755, 756, 757, 758, 759, 760, 761, 762, 763, 764, 765, 766, 767, 768, 769, 770, 771, 772, 773, 774, 775, 776, 777, 778, 779, 780, 781, 782, 783, 784, 785, 786, 787, 788, 789, 790, 791, 792, 793, 794, 795, 796, 797, 798, 799, 800, 801, 802, 803, 804, 805, 806, 807, 808, 809, 810, 811, 812, 813, 814, 815, 816, 817, 818, 819, 820, 821, 822, 823, 824, 825, 826, 827, 828, 829, 830, 831, 832, 833, 834, 835, 836, 837, 838, 839, 840, 841, 842, 843, 844, 845, 846, 847, 848, 849, 850, 851, 852, 853, 854, 855, 856, 857, 858, 859, 860, 861, 862, 863, 864, 865, 866, 867, 868, 869, 870, 871, 872, 873, 874, 875, 876, 877, 878, 879, 880, 881, 882, 883, 884, 885, 886, 887, 888, 889, 890, 891, 892, 893, 894, 895, 896, 897, 898, 899, 900, 901, 902, 903, 904, 905, 906, 907, 908, 909, 910, 911, 912, 913, 914, 915, 916, 917, 918, 919, 920, 921, 922, 923, 924, 925, 926, 927, 928, 929, 930, 931, 932, 933, 934, 935, 936, 937, 938, 939, 940, 941, 942, 943, 944, 945, 946, 947, 948, 949, 950, 951, 952, 953, 954, 955, 956, 957, 958, 959, 960, 961, 962, 963, 964, 965, 966, 967, 968, 969, 970, 971, 972, 973, 974, 975, 976, 977, 978, 979, 980, 981, 982, 983, 984, 985, 986, 987, 988, 989, 990, 991, 992, 993, 994, 995, 996, 997, 998, 999, 1000, 1001, 1002, 1003, 1004, 1005, 1006, 1007, 1008, 1009, 1010, 1011, 1012, 1013, 1014, 1015, 1016, 1017, 1018, 1019, 1020, 1021, 1022, 1023, 1024, 1025, 1026, 1027, 1028, 1029, 1030, 1031, 1032, 1033, 1034, 1035, 1036, 1037, 1038, 1039, 1040, 1041, 1042, 1043, 1044, 1045, 1046, 1047, 1048, 1049, 1050, 1051, 1052, 1053, 1054, 1055, 1056, 1057, 1058, 1059, 1060, 1061, 1062, 1063, 1064, 1065, 1066, 1067, 1068, 1069, 1070, 1071, 1072, 1073, 1074, 1075, 1076, 1077, 1078, 1079, 1080, 1081, 1082, 1083, 1084, 1085, 1086, 1087, 1089, 1090], "core": [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52], "attr": [2, 3], "attributehandl": [3, 1017], "common": [4, 5, 165, 166, 167, 168, 169, 170, 171, 342, 343, 344, 345, 346, 358, 359, 936, 1090], "filter_network_df": 5, "complex": [6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 877, 1019, 1090, 1093], "abstractcomplexresourc": 7, "cellphonedb": [8, 138, 139, 140, 141, 142, 143, 144, 1090], "cellchatdb": [9, 120, 121, 122, 123, 124, 125], "cellink": [10, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137], "compleat": [11, 174, 175, 176], "complexaggreg": 12, "complexport": [13, 177, 178], "corum": [14, 185, 186], "guidetopharmacologi": 15, "havugimana": [16, 334, 335, 336], "hpmr": [17, 373, 374, 375, 376, 377, 378], "humap": [18, 393, 394, 395], "humap2": 19, "icellnet": [20, 413, 414, 415, 416, 417], "kegg": [21, 452, 453, 454, 455, 456, 457, 458, 459, 460, 461], "pdb": [22, 609, 610, 611, 612, 1009, 1010, 1011, 1012, 1013], "signor": [23, 745, 746, 747, 748, 749, 750, 751], "spike": [24, 752, 753, 754], "all_complex": 25, "get_db": [26, 36, 51, 841, 965, 1053], "init_db": [27, 37, 52, 842, 966, 1054], "entiti": [28, 29, 30, 31, 1022], "entitykei": 30, "entitylist": 31, "enz_sub": [32, 33, 34, 35, 36, 37], "enzymesubstrateaggreg": 33, "enzymesubstrateorthologyprocessor": 34, "enzymesubstrateprocessor": 35, "evid": [38, 39, 40], "interact": [41, 42, 43, 44, 916, 1090, 1093], "interactiondataframerecord": 43, "interactionkei": 44, "intercell_annot": [45, 46], "exclud": 46, "network": [47, 48, 49, 50, 51, 52, 925, 926, 927, 928, 1090, 1093], "networkentitycollect": 49, "networkstatsrecord": 50, "data": [53, 912, 1090], "disclaim": 54, "info": [55, 806, 1090], "input": [56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142, 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, 153, 154, 155, 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, 168, 169, 170, 171, 172, 173, 174, 175, 176, 177, 178, 179, 180, 181, 182, 183, 184, 185, 186, 187, 188, 189, 190, 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207, 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220, 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233, 234, 235, 236, 237, 238, 239, 240, 241, 242, 243, 244, 245, 246, 247, 248, 249, 250, 251, 252, 253, 254, 255, 256, 257, 258, 259, 260, 261, 262, 263, 264, 265, 266, 267, 268, 269, 270, 271, 272, 273, 274, 275, 276, 277, 278, 279, 280, 281, 282, 283, 284, 285, 286, 287, 288, 289, 290, 291, 292, 293, 294, 295, 296, 297, 298, 299, 300, 301, 302, 303, 304, 305, 306, 307, 308, 309, 310, 311, 312, 313, 314, 315, 316, 317, 318, 319, 320, 321, 322, 323, 324, 325, 326, 327, 328, 329, 330, 331, 332, 333, 334, 335, 336, 337, 338, 339, 340, 341, 342, 343, 344, 345, 346, 347, 348, 349, 350, 351, 352, 353, 354, 355, 356, 357, 358, 359, 360, 361, 362, 363, 364, 365, 366, 367, 368, 369, 370, 371, 372, 373, 374, 375, 376, 377, 378, 379, 380, 381, 382, 383, 384, 385, 386, 387, 388, 389, 390, 391, 392, 393, 394, 395, 396, 397, 398, 399, 400, 401, 402, 403, 404, 405, 406, 407, 408, 409, 410, 411, 412, 413, 414, 415, 416, 417, 418, 419, 420, 421, 422, 423, 424, 425, 426, 427, 428, 429, 430, 431, 432, 433, 434, 435, 436, 437, 438, 439, 440, 441, 442, 443, 444, 445, 446, 447, 448, 449, 450, 451, 452, 453, 454, 455, 456, 457, 458, 459, 460, 461, 462, 463, 464, 465, 466, 467, 468, 469, 470, 471, 472, 473, 474, 475, 476, 477, 478, 479, 480, 481, 482, 483, 484, 485, 486, 487, 488, 489, 490, 491, 492, 493, 494, 495, 496, 497, 498, 499, 500, 501, 502, 503, 504, 505, 506, 507, 508, 509, 510, 511, 512, 513, 514, 515, 516, 517, 518, 519, 520, 521, 522, 523, 524, 525, 526, 527, 528, 529, 530, 531, 532, 533, 534, 535, 536, 537, 538, 539, 540, 541, 542, 543, 544, 545, 546, 547, 548, 549, 550, 551, 552, 553, 554, 555, 556, 557, 558, 559, 560, 561, 562, 563, 564, 565, 566, 567, 568, 569, 570, 571, 572, 573, 574, 575, 576, 577, 578, 579, 580, 581, 582, 583, 584, 585, 586, 587, 588, 589, 590, 591, 592, 593, 594, 595, 596, 597, 598, 599, 600, 601, 602, 603, 604, 605, 606, 607, 608, 609, 610, 611, 612, 613, 614, 615, 616, 617, 618, 619, 620, 621, 622, 623, 624, 625, 626, 627, 628, 629, 630, 631, 632, 633, 634, 635, 636, 637, 638, 639, 640, 641, 642, 643, 644, 645, 646, 647, 648, 649, 650, 651, 652, 653, 654, 655, 656, 657, 658, 659, 660, 661, 662, 663, 664, 665, 666, 667, 668, 669, 670, 671, 672, 673, 674, 675, 676, 677, 678, 679, 680, 681, 682, 683, 684, 685, 686, 687, 688, 689, 690, 691, 692, 693, 694, 695, 696, 697, 698, 699, 700, 701, 702, 703, 704, 705, 706, 707, 708, 709, 710, 711, 712, 713, 714, 715, 716, 717, 718, 719, 720, 721, 722, 723, 724, 725, 726, 727, 728, 729, 730, 731, 732, 733, 734, 735, 736, 737, 738, 739, 740, 741, 742, 743, 744, 745, 746, 747, 748, 749, 750, 751, 752, 753, 754, 755, 756, 757, 758, 759, 760, 761, 762, 763, 764, 765, 766, 767, 768, 769, 770, 771, 772, 773, 774, 775, 776, 777, 778, 779, 780, 781, 782, 783, 784, 785, 786, 787, 788, 789, 790, 791, 792, 793, 794, 795, 796, 797, 798, 799, 800, 801, 802, 803, 804, 805, 806, 807, 808, 809, 810, 811, 812, 813, 814, 815, 816, 817, 818, 819, 820, 821, 822, 823, 824, 825, 826, 827, 828, 829, 830, 831, 832, 833, 834, 835, 836, 837, 838, 839, 840, 841, 842, 843, 844, 845, 846, 847, 848, 849, 850, 851, 852, 853, 854, 855, 1090], "ab": [57, 58], "abs_interact": 58, "acsn": [59, 60, 61], "acsn_interact": 60, "acsn_interactions_sif": 61, "adhesom": [62, 63, 64], "adhesome_annot": 63, "adhesome_interact": 64, "adrec": [65, 66, 67, 68, 69, 70, 71, 72, 73, 74], "adrecsadr": 66, "adrecschildpar": 67, "adrecsdrug": 68, "adrecsdrugadr": 69, "adrecsterm": 70, "adrecs_adr_ontologi": 71, "adrecs_drug_adr": 72, "adrecs_drug_identifi": 73, "adrecs_hierarchi": 74, "almen2009": [75, 76], "almen2009_annot": 76, "baccin2019": [77, 78, 79], "baccin2019_annot": 78, "baccin2019_interact": 79, "biogp": [80, 81, 82, 83, 84, 85], "biogpsdataset": 81, "biogps_annot": 82, "biogps_dataset": 83, "biogps_download": 84, "biogps_download_al": 85, "biogrid": [86, 87, 88], "biogrid_all_interact": 87, "biogrid_interact": 88, "biomart": [89, 90, 91, 92, 93, 94], "biomart_homologi": 90, "biomart_microarrai": [91, 93], "biomart_microarray_typ": 92, "biomart_queri": 94, "biomodel": [95, 96, 97, 98, 99, 100], "download_single_model": 96, "get_all_model": 97, "get_biomodel": 98, "get_biomodels_req": 99, "get_single_model": 100, "ca1": [101, 102], "ca1_interact": 102, "cancercellmap": [103, 104], "ccmap_interact": 104, "cancerdrugsdb": [105, 106, 107, 108], "cancerdrugsdb_annot": 106, "cancerdrugsdb_download": 107, "cancerdrugsdb_interact": 108, "cancersea": [109, 110], "cancersea_annot": 110, "cell": [111, 112], "cell_supplementari": 112, "cellcal": [113, 114, 115, 116, 117], "cellcall_annot": 114, "cellcall_download": 115, "cellcall_download_al": 116, "cellcall_interact": 117, "cellcellinteract": [118, 119], "cellcellinteractions_annot": 119, "cellchatdb_annot": 121, "cellchatdb_cofactor": 122, "cellchatdb_complex": 123, "cellchatdb_download": 124, "cellchatdb_interact": 125, "cellinkerinteract": 127, "cellinker_annot": 128, "cellinker_complex_annot": 129, "cellinker_complex": 130, "cellinker_complexes_raw": 131, "cellinker_lr_interact": 132, "cellinker_lr_interactions_raw": 133, "cellinker_protein_annot": 134, "cellinker_smol_interact": 135, "cellinker_smol_interactions_raw": 136, "components_to_complex": 137, "cellphonedbannot": 139, "cellphonedb_complex_annot": 140, "cellphonedb_complex": 141, "cellphonedb_interact": 142, "cellphonedb_ligands_receptor": 143, "cellphonedb_protein_annot": 144, "celltalkdb": [145, 146, 147, 148], "celltalkdb_annot": 146, "celltalkdb_download": 147, "celltalkdb_interact": 148, "celltypist": [149, 150], "celltypist_annot": 150, "chembl": [151, 152, 153, 154, 155, 156, 157, 158], "chembl_act": 152, "chembl_assai": 153, "chembl_docu": 154, "chembl_drug_ind": 155, "chembl_mechan": 156, "chembl_molecul": 157, "chembl_target": 158, "clinvar": [159, 160, 161], "clinvar_cit": 160, "clinvar_raw": 161, "collectri": [162, 163, 164], "collectri_interact": 163, "collectri_raw": 164, "csv_sep_chang": 166, "glom_field": 167, "json_extract": 168, "json_read": 169, "read_tabl": 170, "read_xl": 171, "compath": [172, 173], "compath_map": 173, "compleat_complex": 175, "compleat_raw": 176, "complexportal_complex": 178, "comppi": [179, 180, 181], "comppi_interaction_loc": 180, "comppi_loc": 181, "connectomedb": [182, 183, 184], "connectomedb_annot": 183, "connectomedb_interact": 184, "corum_complex": 186, "cosmic": [187, 188], "cancer_gene_census_annot": 188, "cpad": [189, 190, 191, 192], "cpad_annot": 190, "cpad_pathway_canc": 191, "get_cpad": 192, "cpdb": [193, 194, 195], "cpdb_interact": 194, "cpdb_interactions_ltp": 195, "credenti": [196, 197], "csa": [198, 199], "get_csa": 199, "cspa": [200, 201, 202, 203], "cspa_annot": 201, "cspa_cell_type_annot": 202, "cspa_cell_typ": 203, "ctdbase": [204, 205, 206], "ctdbase_rel": 205, "ctdbase_vocabulari": 206, "cytosig": [207, 208, 209], "cytosig_annot": 208, "cytosig_df": 209, "dbptm": [210, 211, 212, 213], "dbptm_enzyme_substr": 211, "dbptm_enzyme_substrate_old": 212, "dbptm_interact": 213, "ddinter": [214, 215, 216, 217, 218, 219], "ddinter_drug_interact": 215, "ddinter_identifi": 216, "ddinter_interact": 217, "ddinter_map": 218, "ddinter_n_drug": 219, "deathdomain": [220, 221, 222], "deathdomain_interact": 221, "deathdomain_interactions_rescu": 222, "depod": [223, 224, 225], "depod_enzyme_substr": 224, "depod_interact": 225, "dgidb": [226, 227, 228, 229], "dgidb_annot": 227, "dgidb_interact": 228, "get_dgidb_old": 229, "dip": [230, 231, 232], "dip_interact": 231, "dip_login": 232, "diseas": [233, 234, 235, 236, 237, 238, 239, 240], "diseases_gener": 234, "experiments_filt": 235, "experiments_ful": 236, "knowledge_filt": 237, "knowledge_ful": 238, "textmining_filt": 239, "textmining_ful": 240, "domino": [241, 242, 243, 244, 245], "domino_ddi": 242, "domino_enzsub": 243, "domino_interact": 244, "get_domino": 245, "dorothea": [246, 247, 248, 249, 250, 251, 252, 253, 254, 255, 256, 1090], "dorotheainteract": 247, "dorothea_full_raw": 248, "dorothea_interact": 249, "detail": [249, 250, 251, 253, 255, 256], "dorothea_interactions_old": 250, "dorothea_old_csv": 251, "dorothea_rda_raw": 252, "get_dorothea_old": 253, "get_tfregulon": 254, "tfregulons_interact": 255, "tfregulons_interactions_old": 256, "drugbank": [257, 258, 259, 260, 261, 262, 263], "drugbankful": 258, "drugbank_annot": 259, "drugbank_drug": 260, "drugbank_interact": 261, "drugbank_map": 262, "drugbank_raw_interact": 263, "drugcentr": [264, 265, 266, 267], "drugcentral_drug": 265, "drugcentral_interact": 266, "drugcentral_map": 267, "ebi": [268, 269], "ebi_rest": 269, "elm": [270, 271, 272, 273, 274], "elm_class": 271, "elm_domain": 272, "elm_inst": 273, "elm_interact": 274, "embopress": [275, 276], "embopress_supplementari": 276, "embrac": [277, 278, 279, 280, 281], "embrace_annot": 278, "embrace_interact": 279, "embrace_raw": 280, "embrace_transl": 281, "encod": [282, 283], "encode_tf_mirna_interact": 283, "ensembl": [284, 285], "ensembl_organ": 285, "eutil": [286, 287], "esummari": 287, "exocarta": [288, 289, 290], "get_exocarta": 289, "get_vesiclepedia": 290, "expasi": [291, 292, 293], "expasy_enzyme_class": 292, "expasy_enzym": 293, "genecard": [294, 295, 296, 297], "genecards_datasheet": 295, "genecards_soup": 296, "genecards_summari": 297, "get_method": 298, "go": [299, 300, 301, 302, 303, 304, 305, 306, 307, 308, 309, 310, 311, 312, 313, 314, 315, 316, 317, 318, 319, 320, 960, 961, 962, 963, 964, 965, 966, 967], "get_go_desc": 300, "get_go_quick": 301, "get_goslim": 302, "go_ancestor": 303, "go_ancestors_goos": 304, "go_ancestors_quickgo": 305, "go_annot": 306, "go_annotations_al": 307, "go_annotations_goa": 308, "go_annotations_goos": 309, "go_annotations_quickgo": 310, "go_annotations_solr": 311, "go_annotations_uniprot": 312, "go_descend": 313, "go_descendants_goos": 314, "go_descendants_quickgo": 315, "go_descendants_to_ancestor": 316, "go_term": 317, "go_terms_goos": 318, "go_terms_quickgo": 319, "go_terms_solr": 320, "gpcrdb": [321, 322], "gpcrdb_annot": 322, "graphviz": [323, 324], "graphviz_attr": 324, "guide2pharma": [325, 326, 327, 328], "guide2pharma_complex": 326, "guide2pharma_download": 327, "guide2pharma_interact": 328, "gutmgen": [329, 330, 331, 332, 333], "gutmgeneannot": 330, "gutmgeneraw": 331, "gutmgene_annot": 332, "gutmgene_raw": 333, "get_havugimana": 335, "havugimana_complex": 336, "hgnc": [337, 338], "hgnc_genegroup": 338, "hippi": [339, 340], "hippie_interact": 340, "hmdb": [341, 342, 343, 344, 345, 346, 347, 348, 349, 350, 351, 352, 353, 354, 355, 356, 357, 358, 359, 360, 361, 362, 363, 364, 365, 366, 367, 368, 1090], "iter": [343, 348, 353], "map": [344, 349, 354, 892, 968, 969, 970, 971, 972, 973, 974, 975, 976, 977, 978, 979, 980, 981, 982, 983, 984, 985, 986], "raw": [345, 350, 355], "tabl": [346, 351, 356, 1090], "metabolit": [347, 348, 349, 350, 351, 360], "protein": [352, 353, 354, 355, 356, 361, 674, 675, 1025, 1090], "schema": [357, 358, 359, 360, 361], "field": 359, "structur": [362, 363, 1090], "sdf": 363, "visual": [364, 365, 366, 1065, 1066, 1067, 1068, 1069, 1070, 1071, 1072, 1073, 1074, 1075, 1076, 1077, 1078, 1079, 1080, 1081, 1082, 1083, 1084, 1085, 1086, 1087], "show_structur": 365, "structure_svg": 366, "xml": [367, 368], "hmdb_xml": 368, "homologen": [369, 370, 371, 372], "get_homologen": 370, "homologene_dict": 371, "homologene_uniprot_dict": 372, "hpmrinteract": 374, "get_hpmr": 375, "hpmr_annot": 376, "hpmr_complex": 377, "hpmr_interact": 378, "hpo": [379, 380, 381, 382, 383], "hpo_annot": 380, "hpo_diseas": 381, "hpo_ontologi": 382, "hpo_term": 383, "hprd": [384, 385, 386, 387, 388], "get_hprd": 385, "hprd_enzyme_substr": 386, "hprd_interact": 387, "hprd_interactions_htp": 388, "htri": [389, 390], "htri_interact": 390, "humancellmap": [391, 392], "humancellmap_annot": 392, "humap2_complex": 394, "humap_complex": 395, "humsavar": [396, 397], "uniprot_vari": 397, "huri": [398, 399, 400, 401, 402, 403, 404, 405, 406, 407, 408, 409, 410], "hi_i_interact": 399, "hi_ii_interact": 400, "hi_iii_old": 401, "hi_union_interact": 402, "huri_interact": 403, "lit_bm_13_interact": 404, "lit_bm_17_interact": 405, "lit_bm_interact": 406, "rolland_hi_ii_14": 407, "vidal_hi_iii_old": 408, "yang2016_interact": 409, "yu2011_interact": 410, "i3d": [411, 412], "get_i3d": 412, "icellnetrecord": 414, "icellnet_annot": 415, "icellnet_complex": 416, "icellnet_interact": 417, "ielm": [418, 419, 420], "get_ielm": 419, "get_ielm_hug": 420, "imweb": [421, 422, 423], "get_imweb": 422, "get_imweb_req": 423, "innatedb": [424, 425], "innatedb_interact": 425, "instruct": [426, 427, 428], "get_instruct": 427, "get_instruct_offset": 428, "intact": [429, 430], "intact_interact": 430, "integrin": [431, 432], "get_integrin": 432, "interpro": [433, 434, 435, 436, 437], "interpro2go_annot": 434, "interpro_annot": 435, "interpro_entri": 436, "interpro_xref": 437, "intogen": [438, 439], "intogen_annot": 439, "ipi": [440, 441], "ipi_uniprot": 441, "iptmnet": [442, 443, 444], "iptmnetinteract": 443, "iptmnet_interact": 444, "italk": [445, 446, 447, 448], "italk_annot": 446, "italk_interact": 447, "italk_raw": 448, "kea": [449, 450, 451], "kea_enzyme_substr": 450, "kea_interact": 451, "keggpathwai": 453, "kegg_dbget": 454, "kegg_interact": 455, "kegg_medicu": 456, "kegg_medicus_complex": 457, "kegg_medicus_interact": 458, "kegg_pathway_annot": 459, "kegg_pathway_annotations_pathwaycommon": 460, "kegg_pathwai": 461, "kegg_api": [462, 463, 464, 465, 466, 467, 468, 469, 470, 471, 472, 473, 474, 475, 476, 477, 478], "disease_to_drug": 463, "disease_to_gen": 464, "disease_to_pathwai": 465, "drug_to_diseas": 466, "drug_to_drug": 467, "drug_to_gen": 468, "drug_to_pathwai": 469, "gene_to_diseas": 470, "gene_to_drug": 471, "gene_to_pathwai": 472, "kegg_drug_to_chebi": 473, "kegg_gene_to_ncbi_geneid": 474, "kegg_gene_to_uniprot": 475, "pathway_to_diseas": 476, "pathway_to_drug": 477, "pathway_to_gen": 478, "kinasedotcom": [479, 480], "kinasedotcom_annot": 480, "kirouac2010": [481, 482], "kirouac2010_interact": 482, "lambert2018": [483, 484, 485], "lambert2018_annot": 484, "lambert2018_s1_raw": 485, "laudanna": [486, 487, 488], "laudanna_direct": 487, "laudanna_effect": 488, "li2012": [489, 490, 491, 492, 493], "get_li2012": 490, "li2012_dmi": 491, "li2012_enzyme_substr": 492, "li2012_interact": 493, "linc": [494, 495], "lincs_compound": 495, "lmpid": [496, 497, 498, 499], "lmpid_dmi": 497, "lmpid_interact": 498, "load_lmpid": 499, "lncdiseas": [500, 501], "lncdisease_interact": 501, "lncrnadb": [502, 503], "lncrnadb_interact": 503, "locat": [504, 505], "locate_loc": 505, "lrdb": [506, 507, 508, 509], "lrdbannot": 507, "lrdb_annot": 508, "lrdb_interact": 509, "macrophag": [510, 511], "macrophage_interact": 511, "main": 512, "matrisom": [513, 514], "matrisome_annot": 514, "matrixdb": [515, 516, 517, 518, 519, 520], "matrixdb_annot": 516, "matrixdb_ecm_protein": 517, "matrixdb_interact": 518, "matrixdb_membrane_protein": 519, "matrixdb_secreted_protein": 520, "mcam": [521, 522], "mcam_cell_adhesion_molecul": 522, "membranom": [523, 524], "membranome_annot": 524, "mimp": [525, 526, 527, 528], "get_kinase_class": 526, "mimp_enzyme_substr": 527, "mimp_interact": 528, "mir2diseas": [529, 530], "mir2disease_interact": 530, "mirbas": [531, 532, 533, 534, 535, 536, 537, 538], "get_mirbase_alias": 532, "mirbase_id": 533, "mirbase_matur": 534, "mirbase_mature_al": 535, "mirbase_precursor": 536, "mirbase_precursor_al": 537, "mirbase_precursor_to_matur": 538, "mirdeathdb": [539, 540], "mirdeathdb_interact": 540, "mirecord": [541, 542], "mirecords_interact": 542, "mirtarbas": [543, 544], "mirtarbase_interact": 544, "mitab": [545, 546, 547], "mitab_field_list": 546, "mitab_field_uniprot": 547, "mppi": [548, 549], "mppi_interact": 549, "msigdb": [550, 551, 552, 553], "msigdb_annot": 551, "msigdb_download": 552, "msigdb_download_collect": 553, "ncrdeathdb": [554, 555], "ncrdeathdb_interact": 555, "negatom": [556, 557], "negatome_interact": 557, "netbiol": [558, 559, 560], "arn_interact": 559, "nrf2ome_interact": 560, "netpath": [561, 562, 563, 564], "netpath_interact": 562, "netpath_nam": 563, "netpath_pathway_annot": 564, "offsid": [565, 566], "offsides_side_effect": 566, "oma": [567, 568, 569], "oma_ortholog": 568, "oma_t": 569, "ontologi": [570, 571, 572, 1090], "listof_ontologi": 571, "opentarget": [573, 574, 575, 576, 577, 578], "opentargets_adverse_react": 574, "opentargets_baseline_express": 575, "opentargets_direct_scor": 576, "opentargets_gener": 577, "opentargets_indirect_scor": 578, "opm": [579, 580], "opm_annot": 580, "oreganno": [581, 582, 583], "oreganno_interact": 582, "oreganno_raw": 583, "panglaodb": [584, 585, 586], "panglaodb_annot": 585, "panglaodb_raw": 586, "pathophenodb": [587, 588, 589], "diseasepathogen": 588, "disease_pathogen_interact": 589, "pathwaycommon": [590, 591, 592, 593, 594, 595, 596, 597, 598, 599, 600, 601, 602, 603, 604, 605, 606], "pathwaycommonsinteract": 591, "pathwaycommonsresourc": 592, "pathwaycommons_bind_interact": 593, "pathwaycommons_biogrid_interact": 594, "pathwaycommons_corum_interact": 595, "pathwaycommons_dip_interact": 596, "pathwaycommons_hprd_interact": 597, "pathwaycommons_inoh_interact": 598, "pathwaycommons_intact_interact": 599, "pathwaycommons_interact": 600, "pathwaycommons_kegg_interact": 601, "pathwaycommons_netpath_interact": 602, "pathwaycommons_panther_interact": 603, "pathwaycommons_phosphosite_interact": 604, "pathwaycommons_reactome_interact": 605, "pathwaycommons_wikipathways_interact": 606, "pazar": [607, 608], "pazar_interact": 608, "pdb_chain": 610, "pdb_complex": 611, "pdb_uniprot": 612, "pdzbase": [613, 614], "pdzbase_interact": 614, "pepcyb": [615, 616, 617], "pepcyber_detail": 616, "pepcyber_interact": 617, "pfam": [618, 619, 620, 621, 622, 1042], "pfam_nam": 619, "pfam_pdb": 620, "pfam_region": 621, "pfam_uniprot": 622, "pharo": [623, 624, 625, 626, 627, 628, 629, 630, 631], "pharos_diseas": 624, "pharos_express": 625, "pharos_gener": 626, "pharos_gtex": 627, "pharos_ligand": 628, "pharos_ortholog": 629, "pharos_target": 630, "pharos_xref": 631, "phobiu": [632, 633], "phobius_annot": 633, "phosphatom": [634, 635], "phosphatome_annot": 635, "phosphoelm": [636, 637, 638, 639], "phosphoelm_enzyme_substr": 637, "phosphoelm_interact": 638, "phosphoelm_kinas": 639, "phosphonetwork": [640, 641, 642], "phosphonetworks_enzyme_substr": 641, "phosphonetworks_interact": 642, "phosphopoint": [643, 644, 645], "phosphopoint_direct": 644, "phosphopoint_interact": 645, "phosphosit": [646, 647, 648, 649, 650, 651, 652, 653, 654, 655, 656, 657, 658], "phosphosite_direct": 647, "phosphosite_enzyme_substr": 648, "phosphosite_interact": 649, "phosphosite_interactions_al": 650, "phosphosite_interactions_cur": 651, "phosphosite_interactions_new": 652, "phosphosite_interactions_noref": 653, "phosphosite_ptm_orthologi": 654, "phosphosite_ptm": 655, "phosphosite_regsit": 656, "phosphosite_regsites_one_organ": 657, "regsites_tab": 658, "pisa": [659, 660, 661, 662], "pisabond": 660, "pisa_bond": 661, "pisa_interfac": 662, "pro": [663, 664, 665], "get_pro": 664, "pro_map": 665, "progeni": [666, 667, 668], "progeny_annot": 667, "progeny_raw": 668, "proteinatla": [669, 670, 671, 672, 673], "get_proteinatla": 670, "proteinatlas_annot": 671, "proteinatlas_secretome_annot": 672, "proteinatlas_subcellular_annot": 673, "variant": 675, "protmapp": [676, 677, 678, 679], "get_protmapp": 677, "protmapper_enzyme_substr": 678, "protmapper_interact": 679, "pubchem": [680, 681], "pubchem_map": 681, "pubm": [682, 683, 684, 685, 686, 687, 688], "get_pmid": 683, "get_pubm": 684, "only_pmid": 685, "open_pubm": 686, "pmids_dict": 687, "pmids_list": 688, "ramilowski2015": [689, 690, 691], "ramilowski_interact": 690, "ramilowski_loc": 691, "ramp": [692, 693, 694, 695, 696, 697, 698, 1090], "ramp_id_typ": 693, "ramp_id_types_2": 694, "ramp_list_t": 695, "ramp_map": 696, "ramp_raw": 697, "ramp_show_t": 698, "rdata": 699, "reaction": [700, 701, 702, 703, 704, 705, 706, 707, 708, 709, 710, 711, 712, 713, 714, 715, 716, 717, 718, 719, 1028], "acsn_biopax": 701, "acsn_interactions_2": 702, "get_acsn_effect": 703, "get_control": [704, 922], "get_interact": 705, "get_react": 706, "get_soup": 707, "panther_biopax": 708, "panther_interact": 709, "pid_biopax": 710, "pid_interact": 711, "process_complex": 712, "process_control": 713, "process_react": 714, "reactions_biopax": 715, "reactome_biopax": 716, "reactome_b": 717, "reactome_interact": 718, "reactome_sbml": 719, "reactom": [720, 721, 722, 723, 724], "reactome_chebi": 721, "reactome_pathway_rel": 722, "reactome_pathwai": 723, "reactome_uniprot": 724, "scconnect": [725, 726, 727, 728], "scconnect_annot": 726, "scconnect_complex": 727, "scconnect_interact": 728, "scienc": [729, 730], "science_download": 730, "sider": [731, 732, 733, 734, 735, 736, 737, 738, 739], "siderdrug": 732, "sidersideeffect": 733, "sidersideeffectmeddra": 734, "sidersideeffetfrequ": 735, "sider_drug_nam": 736, "sider_meddra_side_effect": 737, "sider_side_effect_frequ": 738, "sider_side_effect": 739, "signalink": [740, 741, 742, 743, 744], "signalink_annot": 741, "signalink_function_annot": 742, "signalink_interact": 743, "signalink_pathway_annot": 744, "signor_complex": 746, "signor_enzyme_substr": 747, "signor_interact": 748, "signor_pathway_annot": 749, "signor_pathwai": 750, "signor_protein_famili": 751, "spike_complex": 753, "spike_interact": 754, "stitch": [755, 756, 757], "stitch_actions_interact": 756, "stitch_links_interact": 757, "string": [758, 759, 760, 761, 762], "string_effect": 759, "string_links_interact": 760, "string_physical_interact": 761, "string_speci": 762, "surfaceom": [763, 764], "surfaceome_annot": 764, "switches_elm": [765, 766], "get_switches_elm": 766, "talklr": [767, 768, 769, 770], "talklr_annot": 768, "talklr_interact": 769, "talklr_raw": 770, "tcdb": [771, 772, 773, 774], "tcdb_annot": 772, "tcdb_class": 773, "tcdb_famili": 774, "tfcensu": [775, 776], "tfcensus_annot": 776, "threedcomplex": [777, 778, 779, 780, 781, 782], "threedcomplex_chain": 778, "threedcomplex_complex": 779, "threedcomplex_contact": 780, "threedcomplex_ddi": 781, "threedcomplex_nresidu": 782, "threedid": [783, 784, 785, 786, 787], "get_3did": 784, "get_3did_ddi": 785, "get_3did_dmi": 786, "process_3did_dmi": 787, "topdb": [788, 789], "topdb_annot": 789, "transmir": [790, 791], "transmir_interact": 791, "trip": [792, 793, 794, 795, 796, 797, 798], "take_a_trip": 793, "trip_find_uniprot": 794, "trip_get_uniprot": 795, "trip_interact": 796, "trip_process": 797, "trip_process_t": 798, "trrust": [799, 800, 801, 802], "trrust_human": 800, "trrust_interact": 801, "trrust_mous": 802, "twosid": [803, 804], "twosides_interact": 804, "unichem": [805, 806, 807, 808, 809, 1063, 1064], "unichem_info": 807, "unichem_map": 808, "unichem_sourc": 809, "uniprot": [810, 811, 812, 813, 814, 815, 816, 817, 818, 819, 820, 821, 822, 823, 824, 825, 826, 827, 828, 829, 830, 831, 832, 833, 834, 835, 836, 1090], "taxon": 811, "uniprotqueri": 812, "uniprotrecordhistori": 813, "deleted_uniprot_genesymbol": 814, "get_uniprot_sec": 815, "idmapping_idtyp": 816, "protein_datasheet": 817, "query_build": 818, "swissprot_delet": 819, "trembl_delet": 820, "uniprot_data": 821, "uniprot_delet": 822, "uniprot_famili": 823, "uniprot_histori": 824, "uniprot_history_recent_datasheet": 825, "uniprot_keyword": 826, "uniprot_loc": 827, "uniprot_ncbi_taxid": 828, "uniprot_ncbi_taxids_2": 829, "uniprot_preprocess": 830, "uniprot_queri": 831, "uniprot_recent_vers": 832, "uniprot_taxonomi": 833, "uniprot_tissu": 834, "uniprot_topologi": 835, "valid_uniprot": 836, "uniprot_db": [837, 838, 839, 840, 841, 842, 843, 844, 845], "all_swissprot": 838, "all_trembl": 839, "all_uniprot": 840, "is_swissprot": 843, "is_trembl": 844, "is_uniprot": 845, "wang": [846, 847, 848, 849, 850], "cui_interact": 847, "hsn_interact": 848, "wang_annot": 849, "wang_interact": 850, "wojtowicz2020": [851, 852, 853], "wojtowicz2020_interact": 852, "wojtowicz2020_raw": 853, "zhong2015": [854, 855], "zhong2015_annot": 855, "intern": [856, 857, 858, 859, 860, 861, 862, 863, 864, 865, 866, 867, 868, 869, 870, 871, 872, 873, 874, 875, 876, 877, 878, 879, 880, 881, 882, 883, 884, 885, 886, 887, 888, 889, 890, 891, 892, 893, 894, 895, 896, 897, 898, 899, 900, 901, 902, 903], "annot_format": [857, 858, 859, 860, 861], "annotdef": 858, "annotdefkei": 859, "annotop": 860, "annotationgroup": 861, "input_format": [862, 863, 864, 865, 866, 867, 868, 869, 870, 871, 872, 873, 874, 875], "arraymap": 863, "biomartmap": 864, "filemap": 865, "hmdbmap": 866, "mappinginput": 867, "networkinput": 868, "picklemap": 869, "promap": 870, "rampmap": 871, "readlist": 872, "unichemmap": 873, "uniprotlistmap": 874, "uniprotmap": 875, "intera": [876, 877, 878, 879, 880, 881, 882, 883, 884, 885], "domain": 878, "domaindomain": 879, "domainmotif": 880, "interfac": 881, "motif": 882, "ptm": 883, "regul": [884, 1090], "residu": [885, 1010, 1039, 1040], "licens": [886, 887, 888, 889, 890, 891, 923, 924, 1090], "licenseattrib": 888, "licensefeatur": 889, "licensepurpos": 890, "licenseshar": 891, "ref": [893, 894, 895], "refer": [894, 1030, 1090, 1091], "get_pubmed_data": 895, "resourc": [896, 897, 898, 899, 900, 901, 902, 903, 909, 910, 911, 912, 913, 914, 915, 916, 917, 918, 919, 920, 921, 922, 923, 924, 925, 926, 927, 928, 929, 1043, 1090], "abstractresourc": 897, "enzymesubstrateresourc": 898, "enzymesubstrateresourcekei": 899, "networkdataset": 900, "networkresourc": 901, "networkresourcekei": 902, "resourceattribut": 903, "legaci": [904, 905, 906, 907, 1090], "db_categori": [905, 906, 907], "get_categori": [906, 907], "log": [908, 1090], "control": [910, 911, 1021], "resourcecontrol": 911, "data_format": [913, 914, 915, 916, 917, 918, 919, 920, 921], "activity_flow": 914, "enzyme_substr": 915, "interaction_htp": 917, "pathway_bad": 918, "reaction_pc": 919, "transcription_deprec": 920, "transcription_onebyon": 921, "choose_dataset": 926, "dataset_prior": 927, "dorothea_expand_level": 928, "url": 929, "share": [930, 931, 932, 933, 934, 935, 936, 937, 938, 939, 940, 941, 942, 943, 944, 945, 946, 947, 948, 949, 950, 951, 952, 953, 954, 955, 956, 957, 958], "cach": [931, 932, 933, 934, 935, 1090], "cache_item": 932, "cache_path": 933, "default_cachedir": 934, "get_cachedir": 935, "constant": 937, "curl": [938, 939, 940, 941, 942, 943, 944, 945, 946, 947, 948, 949, 950, 951, 952, 953, 954, 1090], "fileopen": 940, "remotefil": 941, "cache_delete_off": 942, "cache_delete_on": 943, "cache_off": 944, "cache_on": 945, "cache_print_off": 946, "cache_print_on": 947, "debug_off": 948, "debug_on": 949, "dryrun_off": 950, "dryrun_on": 951, "is_url": 952, "preserve_off": 953, "preserve_on": 954, "progress": [955, 956], "session": [957, 1090], "set": 958, "util": [959, 960, 961, 962, 963, 964, 965, 966, 967, 968, 969, 970, 971, 972, 973, 974, 975, 976, 977, 978, 979, 980, 981, 982, 983, 984, 985, 986, 987, 988, 989, 990, 991, 992, 993, 994, 995, 996, 997, 998, 999, 1000, 1001, 1002, 1003, 1004, 1005, 1006, 1007, 1008, 1009, 1010, 1011, 1012, 1013, 1014, 1015, 1016, 1017, 1018, 1019, 1020, 1021, 1022, 1023, 1024, 1025, 1026, 1027, 1028, 1029, 1030, 1031, 1032, 1033, 1034, 1035, 1036, 1037, 1038, 1039, 1040, 1041, 1042, 1043, 1044, 1045, 1046, 1047, 1048, 1049, 1050, 1051, 1052, 1053, 1054, 1055, 1056, 1057, 1058, 1059, 1060, 1061, 1062, 1063, 1064, 1090], "goannot": 961, "gocustomannot": 962, "geneontologi": 963, "annot": [964, 1090, 1093], "load_go": 967, "mapread": 969, "mapper": 970, "mappingt": 971, "mappingtablekei": 972, "uniprot_id_typ": 973, "get_mapp": 974, "guess_typ": 975, "id_from_label": 976, "id_from_label0": 977, "id_typ": 978, "init": [979, 1006, 1036], "label": 980, "map_nam": [981, 983], "map_name0": 982, "mapping_t": 984, "translation_df": 985, "translation_dict": 986, "metabo": 987, "orthologi": [988, 989, 990, 991, 992, 993, 994, 995, 996, 997, 998, 999, 1000, 1001, 1002, 1003, 1004, 1005, 1006, 1007, 1008, 1090], "ensemblortholog": 989, "ensemblorthologi": 990, "homologeneortholog": 991, "homologeneorthologi": 992, "omaortholog": 993, "omaorthologi": 994, "orthologbas": 995, "orthologmeta": 996, "orthologymanag": 997, "orthologytablekei": 998, "proteinorthologi": 999, "proteom": 1000, "ptmorthologi": 1001, "sequencecontain": 1002, "get_df": 1003, "get_dict": 1004, "get_manag": [1005, 1034], "translat": [1007, 1089, 1090], "translate_df": 1008, "residuemapp": [1011, 1040], "segment": 1012, "residue_pdb": 1013, "proteomicsdb": [1014, 1015], "pyreact": [1016, 1017, 1018, 1019, 1020, 1021, 1022, 1023, 1024, 1025, 1026, 1027, 1028, 1029, 1030], "biopaxread": 1018, "complexvari": 1020, "entityset": 1023, "intersect": 1024, "proteinfamili": 1026, "reactionsid": 1029, "reflist": [1031, 1032, 1033, 1034, 1035, 1036, 1037, 1038], "referencelistmanag": 1032, "check": 1033, "get_reflist": 1035, "is_not": 1037, "select": [1038, 1090], "seq": [1041, 1042, 1043, 1044, 1045, 1046, 1047], "get_isoform": 1045, "read_fasta": 1046, "swissprot_seq": 1047, "taxonomi": [1048, 1049, 1050, 1051, 1052, 1053, 1054, 1055, 1056, 1057, 1058, 1059, 1060, 1061, 1062, 1090], "ensure_common_nam": 1049, "ensure_ensembl_nam": 1050, "ensure_latin_nam": 1051, "ensure_ncbi_tax_id": 1052, "short_latin_nam": 1055, "shorten_latin_nam": 1056, "taxid_from_common_nam": 1057, "taxid_from_dbptm_taxon_nam": 1058, "taxid_from_ensembl_nam": 1059, "taxid_from_latin_nam": 1060, "taxid_from_nonstandard": 1061, "uniprot_taxid": 1062, "draw": [1066, 1067, 1068], "interset": 1067, "plot": [1068, 1090], "igraph_draw": [1069, 1070, 1071, 1072, 1073, 1074, 1075, 1076, 1077, 1078, 1079, 1080, 1081, 1082, 1083, 1084, 1085, 1086, 1087], "abstractcairographdraw": 1070, "arrowedgedraw": [1071, 1078], "defaultgraphdrawerffsupport": 1072, "defaultvertexdraw": [1073, 1087], "textdraw": 1074, "edg": [1075, 1076, 1077, 1078, 1079, 1080, 1081, 1090], "abstractedgedraw": 1076, "alphavaryingedgedraw": 1077, "darktolightedgedraw": 1079, "lighttodarkedgedraw": 1080, "taperededgedraw": 1081, "vertex": [1082, 1083, 1084, 1085, 1086, 1087], "abstractcairodraw": 1083, "abstractcairovertexdraw": 1084, "abstractdraw": 1085, "abstractvertexdraw": 1086, "content": [1088, 1090], "welcom": 1089, "omnipath": [1089, 1090], "do": [1089, 1090], "you": [1089, 1090], "need": 1089, "instal": 1089, "doc": 1089, "get": 1089, "help": 1089, "featur": 1089, "integr": 1089, "databas": [1089, 1090], "manag": [1089, 1090], "further": 1089, "modul": [1089, 1090], "id": [1089, 1090], "convers": 1089, "homologi": 1089, "faq": 1089, "contact": 1089, "impressum": 1089, "histori": [1089, 1090, 1092], "releas": [1089, 1092], "The": 1090, "book": 1090, "introduct": 1090, "build": 1090, "load": 1090, "save": 1090, "app": 1090, "built": 1090, "definit": 1090, "strictli": 1090, "literatur": 1090, "curat": 1090, "extra": 1090, "activ": 1090, "flow": 1090, "enzym": [1090, 1093], "substrat": [1090, 1093], "ligand": 1090, "receptor": 1090, "transcript": 1090, "from": 1090, "other": 1090, "mirna": 1090, "post": 1090, "lncrna": 1090, "mrna": 1090, "small": 1090, "molecul": 1090, "relationship": 1090, "inter": [1090, 1093], "cellular": [1090, 1093], "commun": [1090, 1093], "role": [1090, 1093], "directli": 1090, "origin": 1090, "interest": 1090, "tl": 1090, "dr": 1090, "human": 1090, "metabolom": 1090, "direct": 1090, "access": 1090, "higher": 1090, "level": 1090, "ncbi": 1090, "e": 1090, "download": 1090, "custom": 1090, "failur": 1090, "corrupt": 1090, "issu": 1090, "look": 1090, "debug": 1090, "timeout": 1090, "inspect": 1090, "object": 1090, "i": 1090, "fail": 1090, "onli": 1090, "read": 1090, "ssl": 1090, "http": 1090, "error": 1090, "exampl": [1090, 1093], "commerci": 1090, "us": 1090, "inform": 1090, "certain": 1090, "dataset": [1090, 1093], "which": 1090, "ar": 1090, "pre": 1090, "defin": 1090, "panda": 1090, "datafram": 1090, "self": 1090, "loop": 1090, "molecular": [1090, 1093], "identifi": 1090, "dictionari": 1090, "frame": 1090, "scientif": 1090, "name": 1090, "organ": 1090, "all": 1090, "one": 1090, "format": 1090, "valid": 1090, "singl": 1090, "datasheet": 1090, "record": 1090, "rest": 1090, "api": 1090, "process": 1090, "sanit": 1090, "sequenc": 1090, "full": 1090, "signal": 1090, "an": 1090, "intercellular": 1090, "quantit": 1090, "overview": 1090, "intercel": 1090, "brows": 1090, "categori": 1090, "gene": 1090, "pickl": 1090, "messag": 1090, "basic": 1090, "about": 1090, "file": 1090, "consol": 1090, "disabl": 1090, "write": 1090, "send": 1090, "connect": 1090, "class": 1090, "logger": 1090, "bel": 1090, "export": 1090, "igraph": 1090, "base": 1090, "just": 1090, "want": 1090, "quickli": 1090, "plai": 1090, "around": 1090, "how": [1090, 1091], "ani": 1090, "creat": 1090, "2": [1090, 1092], "test": 1090, "sign": 1090, "node": 1090, "queri": [1090, 1093], "our": 1090, "without": 1090, "causal": 1090, "navig": 1091, "0": 1092, "1": 1092, "3": 1092, "4": 1092, "5": 1092, "32": 1092, "6": 1092, "31": 1092, "7": 1092, "74": 1092, "93": 1092, "110": 1092, "8": 1092, "9": 1092, "10": 1092, "11": 1092, "12": 1092, "13": 1092, "14": 1092, "upcom": 1092, "webservic": 1093, "type": 1093, "mous": 1093, "rat": 1093, "explor": 1093, "possibl": 1093, "paramet": 1093}, "envversion": {"sphinx.domains.c": 3, "sphinx.domains.changeset": 1, "sphinx.domains.citation": 1, "sphinx.domains.cpp": 9, "sphinx.domains.index": 1, "sphinx.domains.javascript": 3, "sphinx.domains.math": 2, "sphinx.domains.python": 4, "sphinx.domains.rst": 2, "sphinx.domains.std": 2, "sphinx.ext.viewcode": 1, "sphinx_last_updated_by_git": 1, "nbsphinx": 4, "sphinx": 60}, "alltitles": {"pypath": [[0, "module-pypath"]], "pypath.core": [[1, "module-pypath.core"]], "pypath.core.attrs": [[2, "module-pypath.core.attrs"]], "pypath.core.attrs.AttributeHandler": [[3, "pypath-core-attrs-attributehandler"]], "pypath.core.common": [[4, "module-pypath.core.common"]], "pypath.core.common.filter_network_df": [[5, "pypath-core-common-filter-network-df"]], "pypath.core.complex": [[6, "module-pypath.core.complex"]], "pypath.core.complex.AbstractComplexResource": [[7, "pypath-core-complex-abstractcomplexresource"]], "pypath.core.complex.CellPhoneDB": [[8, "pypath-core-complex-cellphonedb"]], "pypath.core.complex.Cellchatdb": [[9, "pypath-core-complex-cellchatdb"]], "pypath.core.complex.Cellinker": [[10, "pypath-core-complex-cellinker"]], "pypath.core.complex.Compleat": [[11, "pypath-core-complex-compleat"]], "pypath.core.complex.ComplexAggregator": [[12, "pypath-core-complex-complexaggregator"]], "pypath.core.complex.ComplexPortal": [[13, "pypath-core-complex-complexportal"]], "pypath.core.complex.Corum": [[14, "pypath-core-complex-corum"]], "pypath.core.complex.GuideToPharmacology": [[15, "pypath-core-complex-guidetopharmacology"]], "pypath.core.complex.Havugimana": [[16, "pypath-core-complex-havugimana"]], "pypath.core.complex.Hpmr": [[17, "pypath-core-complex-hpmr"]], "pypath.core.complex.Humap": [[18, "pypath-core-complex-humap"]], "pypath.core.complex.Humap2": [[19, "pypath-core-complex-humap2"]], "pypath.core.complex.Icellnet": [[20, "pypath-core-complex-icellnet"]], "pypath.core.complex.Kegg": [[21, "pypath-core-complex-kegg"]], "pypath.core.complex.Pdb": [[22, "pypath-core-complex-pdb"]], "pypath.core.complex.Signor": [[23, "pypath-core-complex-signor"]], "pypath.core.complex.Spike": [[24, "pypath-core-complex-spike"]], "pypath.core.complex.all_complexes": [[25, "pypath-core-complex-all-complexes"]], "pypath.core.complex.get_db": [[26, "pypath-core-complex-get-db"]], "pypath.core.complex.init_db": [[27, "pypath-core-complex-init-db"]], "pypath.core.entity": [[28, "module-pypath.core.entity"]], "pypath.core.entity.Entity": [[29, "pypath-core-entity-entity"]], "pypath.core.entity.EntityKey": [[30, "pypath-core-entity-entitykey"]], "pypath.core.entity.EntityList": [[31, "pypath-core-entity-entitylist"]], "pypath.core.enz_sub": [[32, "module-pypath.core.enz_sub"]], "pypath.core.enz_sub.EnzymeSubstrateAggregator": [[33, "pypath-core-enz-sub-enzymesubstrateaggregator"]], "pypath.core.enz_sub.EnzymeSubstrateOrthologyProcessor": [[34, "pypath-core-enz-sub-enzymesubstrateorthologyprocessor"]], "pypath.core.enz_sub.EnzymeSubstrateProcessor": [[35, "pypath-core-enz-sub-enzymesubstrateprocessor"]], "pypath.core.enz_sub.get_db": [[36, "pypath-core-enz-sub-get-db"]], "pypath.core.enz_sub.init_db": [[37, "pypath-core-enz-sub-init-db"]], "pypath.core.evidence": [[38, "module-pypath.core.evidence"]], "pypath.core.evidence.Evidence": [[39, "pypath-core-evidence-evidence"]], "pypath.core.evidence.Evidences": [[40, "pypath-core-evidence-evidences"]], "pypath.core.interaction": [[41, "module-pypath.core.interaction"]], "pypath.core.interaction.Interaction": [[42, "pypath-core-interaction-interaction"]], "pypath.core.interaction.InteractionDataFrameRecord": [[43, "pypath-core-interaction-interactiondataframerecord"]], "pypath.core.interaction.InteractionKey": [[44, "pypath-core-interaction-interactionkey"]], "pypath.core.intercell_annot": [[45, "module-pypath.core.intercell_annot"]], "pypath.core.intercell_annot.excludes": [[46, "pypath-core-intercell-annot-excludes"]], "pypath.core.network": [[47, "module-pypath.core.network"]], "pypath.core.network.Network": [[48, "pypath-core-network-network"]], "pypath.core.network.NetworkEntityCollection": [[49, "pypath-core-network-networkentitycollection"]], "pypath.core.network.NetworkStatsRecord": [[50, "pypath-core-network-networkstatsrecord"]], "pypath.core.network.get_db": [[51, "pypath-core-network-get-db"]], "pypath.core.network.init_db": [[52, "pypath-core-network-init-db"]], "pypath.data": [[53, "module-pypath.data"]], "pypath.disclaimer": [[54, "pypath-disclaimer"]], "pypath.info": [[55, "pypath-info"]], "pypath.inputs": [[56, "module-pypath.inputs"]], "pypath.inputs.abs": [[57, "module-pypath.inputs.abs"]], "pypath.inputs.abs.abs_interactions": [[58, "pypath-inputs-abs-abs-interactions"]], "pypath.inputs.acsn": [[59, "module-pypath.inputs.acsn"]], "pypath.inputs.acsn.acsn_interactions": [[60, "pypath-inputs-acsn-acsn-interactions"]], "pypath.inputs.acsn.acsn_interactions_sif": [[61, "pypath-inputs-acsn-acsn-interactions-sif"]], "pypath.inputs.adhesome": [[62, "module-pypath.inputs.adhesome"]], "pypath.inputs.adhesome.adhesome_annotations": [[63, "pypath-inputs-adhesome-adhesome-annotations"]], "pypath.inputs.adhesome.adhesome_interactions": [[64, "pypath-inputs-adhesome-adhesome-interactions"]], "pypath.inputs.adrecs": [[65, "module-pypath.inputs.adrecs"]], "pypath.inputs.adrecs.AdrecsAdr": [[66, "pypath-inputs-adrecs-adrecsadr"]], "pypath.inputs.adrecs.AdrecsChildParent": [[67, "pypath-inputs-adrecs-adrecschildparent"]], "pypath.inputs.adrecs.AdrecsDrug": [[68, "pypath-inputs-adrecs-adrecsdrug"]], "pypath.inputs.adrecs.AdrecsDrugAdr": [[69, "pypath-inputs-adrecs-adrecsdrugadr"]], "pypath.inputs.adrecs.AdrecsTerm": [[70, "pypath-inputs-adrecs-adrecsterm"]], "pypath.inputs.adrecs.adrecs_adr_ontology": [[71, "pypath-inputs-adrecs-adrecs-adr-ontology"]], "pypath.inputs.adrecs.adrecs_drug_adr": [[72, "pypath-inputs-adrecs-adrecs-drug-adr"]], "pypath.inputs.adrecs.adrecs_drug_identifiers": [[73, "pypath-inputs-adrecs-adrecs-drug-identifiers"]], "pypath.inputs.adrecs.adrecs_hierarchy": [[74, "pypath-inputs-adrecs-adrecs-hierarchy"]], "pypath.inputs.almen2009": [[75, "module-pypath.inputs.almen2009"]], "pypath.inputs.almen2009.almen2009_annotations": [[76, "pypath-inputs-almen2009-almen2009-annotations"]], "pypath.inputs.baccin2019": [[77, "module-pypath.inputs.baccin2019"]], "pypath.inputs.baccin2019.baccin2019_annotations": [[78, "pypath-inputs-baccin2019-baccin2019-annotations"]], "pypath.inputs.baccin2019.baccin2019_interactions": [[79, "pypath-inputs-baccin2019-baccin2019-interactions"]], "pypath.inputs.biogps": [[80, "module-pypath.inputs.biogps"]], "pypath.inputs.biogps.BiogpsDataset": [[81, "pypath-inputs-biogps-biogpsdataset"]], "pypath.inputs.biogps.biogps_annotations": [[82, "pypath-inputs-biogps-biogps-annotations"]], "pypath.inputs.biogps.biogps_datasets": [[83, "pypath-inputs-biogps-biogps-datasets"]], "pypath.inputs.biogps.biogps_download": [[84, "pypath-inputs-biogps-biogps-download"]], "pypath.inputs.biogps.biogps_download_all": [[85, "pypath-inputs-biogps-biogps-download-all"]], "pypath.inputs.biogrid": [[86, "module-pypath.inputs.biogrid"]], "pypath.inputs.biogrid.biogrid_all_interactions": [[87, "pypath-inputs-biogrid-biogrid-all-interactions"]], "pypath.inputs.biogrid.biogrid_interactions": [[88, "pypath-inputs-biogrid-biogrid-interactions"]], "pypath.inputs.biomart": [[89, "module-pypath.inputs.biomart"]], "pypath.inputs.biomart.biomart_homology": [[90, "pypath-inputs-biomart-biomart-homology"]], "pypath.inputs.biomart.biomart_microarray": [[91, "pypath-inputs-biomart-biomart-microarray"]], "pypath.inputs.biomart.biomart_microarray_types": [[92, "pypath-inputs-biomart-biomart-microarray-types"]], "pypath.inputs.biomart.biomart_microarrays": [[93, "pypath-inputs-biomart-biomart-microarrays"]], "pypath.inputs.biomart.biomart_query": [[94, "pypath-inputs-biomart-biomart-query"]], "pypath.inputs.biomodels": [[95, "module-pypath.inputs.biomodels"]], "pypath.inputs.biomodels.download_single_model": [[96, "pypath-inputs-biomodels-download-single-model"]], "pypath.inputs.biomodels.get_all_models": [[97, "pypath-inputs-biomodels-get-all-models"]], "pypath.inputs.biomodels.get_biomodels": [[98, "pypath-inputs-biomodels-get-biomodels"]], "pypath.inputs.biomodels.get_biomodels_req": [[99, "pypath-inputs-biomodels-get-biomodels-req"]], "pypath.inputs.biomodels.get_single_model": [[100, "pypath-inputs-biomodels-get-single-model"]], "pypath.inputs.ca1": [[101, "module-pypath.inputs.ca1"]], "pypath.inputs.ca1.ca1_interactions": [[102, "pypath-inputs-ca1-ca1-interactions"]], "pypath.inputs.cancercellmap": [[103, "module-pypath.inputs.cancercellmap"]], "pypath.inputs.cancercellmap.ccmap_interactions": [[104, "pypath-inputs-cancercellmap-ccmap-interactions"]], "pypath.inputs.cancerdrugsdb": [[105, "module-pypath.inputs.cancerdrugsdb"]], "pypath.inputs.cancerdrugsdb.cancerdrugsdb_annotations": [[106, "pypath-inputs-cancerdrugsdb-cancerdrugsdb-annotations"]], "pypath.inputs.cancerdrugsdb.cancerdrugsdb_download": [[107, "pypath-inputs-cancerdrugsdb-cancerdrugsdb-download"]], "pypath.inputs.cancerdrugsdb.cancerdrugsdb_interactions": [[108, "pypath-inputs-cancerdrugsdb-cancerdrugsdb-interactions"]], "pypath.inputs.cancersea": [[109, "module-pypath.inputs.cancersea"]], "pypath.inputs.cancersea.cancersea_annotations": [[110, "pypath-inputs-cancersea-cancersea-annotations"]], "pypath.inputs.cell": [[111, "module-pypath.inputs.cell"]], "pypath.inputs.cell.cell_supplementary": [[112, "pypath-inputs-cell-cell-supplementary"]], "pypath.inputs.cellcall": [[113, "module-pypath.inputs.cellcall"]], "pypath.inputs.cellcall.cellcall_annotations": [[114, "pypath-inputs-cellcall-cellcall-annotations"]], "pypath.inputs.cellcall.cellcall_download": [[115, "pypath-inputs-cellcall-cellcall-download"]], "pypath.inputs.cellcall.cellcall_download_all": [[116, "pypath-inputs-cellcall-cellcall-download-all"]], "pypath.inputs.cellcall.cellcall_interactions": [[117, "pypath-inputs-cellcall-cellcall-interactions"]], "pypath.inputs.cellcellinteractions": [[118, "module-pypath.inputs.cellcellinteractions"]], "pypath.inputs.cellcellinteractions.cellcellinteractions_annotations": [[119, "pypath-inputs-cellcellinteractions-cellcellinteractions-annotations"]], "pypath.inputs.cellchatdb": [[120, "module-pypath.inputs.cellchatdb"]], "pypath.inputs.cellchatdb.cellchatdb_annotations": [[121, "pypath-inputs-cellchatdb-cellchatdb-annotations"]], "pypath.inputs.cellchatdb.cellchatdb_cofactors": [[122, "pypath-inputs-cellchatdb-cellchatdb-cofactors"]], "pypath.inputs.cellchatdb.cellchatdb_complexes": [[123, "pypath-inputs-cellchatdb-cellchatdb-complexes"]], "pypath.inputs.cellchatdb.cellchatdb_download": [[124, "pypath-inputs-cellchatdb-cellchatdb-download"]], "pypath.inputs.cellchatdb.cellchatdb_interactions": [[125, "pypath-inputs-cellchatdb-cellchatdb-interactions"]], "pypath.inputs.cellinker": [[126, "module-pypath.inputs.cellinker"]], "pypath.inputs.cellinker.CellinkerInteraction": [[127, "pypath-inputs-cellinker-cellinkerinteraction"]], "pypath.inputs.cellinker.cellinker_annotations": [[128, "pypath-inputs-cellinker-cellinker-annotations"]], "pypath.inputs.cellinker.cellinker_complex_annotations": [[129, "pypath-inputs-cellinker-cellinker-complex-annotations"]], "pypath.inputs.cellinker.cellinker_complexes": [[130, "pypath-inputs-cellinker-cellinker-complexes"]], "pypath.inputs.cellinker.cellinker_complexes_raw": [[131, "pypath-inputs-cellinker-cellinker-complexes-raw"]], "pypath.inputs.cellinker.cellinker_lr_interactions": [[132, "pypath-inputs-cellinker-cellinker-lr-interactions"]], "pypath.inputs.cellinker.cellinker_lr_interactions_raw": [[133, "pypath-inputs-cellinker-cellinker-lr-interactions-raw"]], "pypath.inputs.cellinker.cellinker_protein_annotations": [[134, "pypath-inputs-cellinker-cellinker-protein-annotations"]], "pypath.inputs.cellinker.cellinker_smol_interactions": [[135, "pypath-inputs-cellinker-cellinker-smol-interactions"]], "pypath.inputs.cellinker.cellinker_smol_interactions_raw": [[136, "pypath-inputs-cellinker-cellinker-smol-interactions-raw"]], "pypath.inputs.cellinker.components_to_complex": [[137, "pypath-inputs-cellinker-components-to-complex"]], "pypath.inputs.cellphonedb": [[138, "module-pypath.inputs.cellphonedb"]], "pypath.inputs.cellphonedb.CellPhoneDBAnnotation": [[139, "pypath-inputs-cellphonedb-cellphonedbannotation"]], "pypath.inputs.cellphonedb.cellphonedb_complex_annotations": [[140, "pypath-inputs-cellphonedb-cellphonedb-complex-annotations"]], "pypath.inputs.cellphonedb.cellphonedb_complexes": [[141, "pypath-inputs-cellphonedb-cellphonedb-complexes"]], "pypath.inputs.cellphonedb.cellphonedb_interactions": [[142, "pypath-inputs-cellphonedb-cellphonedb-interactions"]], "pypath.inputs.cellphonedb.cellphonedb_ligands_receptors": [[143, "pypath-inputs-cellphonedb-cellphonedb-ligands-receptors"]], "pypath.inputs.cellphonedb.cellphonedb_protein_annotations": [[144, "pypath-inputs-cellphonedb-cellphonedb-protein-annotations"]], "pypath.inputs.celltalkdb": [[145, "module-pypath.inputs.celltalkdb"]], "pypath.inputs.celltalkdb.celltalkdb_annotations": [[146, "pypath-inputs-celltalkdb-celltalkdb-annotations"]], "pypath.inputs.celltalkdb.celltalkdb_download": [[147, "pypath-inputs-celltalkdb-celltalkdb-download"]], "pypath.inputs.celltalkdb.celltalkdb_interactions": [[148, "pypath-inputs-celltalkdb-celltalkdb-interactions"]], "pypath.inputs.celltypist": [[149, "module-pypath.inputs.celltypist"]], "pypath.inputs.celltypist.celltypist_annotations": [[150, "pypath-inputs-celltypist-celltypist-annotations"]], "pypath.inputs.chembl": [[151, "module-pypath.inputs.chembl"]], "pypath.inputs.chembl.chembl_activities": [[152, "pypath-inputs-chembl-chembl-activities"]], "pypath.inputs.chembl.chembl_assays": [[153, "pypath-inputs-chembl-chembl-assays"]], "pypath.inputs.chembl.chembl_documents": [[154, "pypath-inputs-chembl-chembl-documents"]], "pypath.inputs.chembl.chembl_drug_indications": [[155, "pypath-inputs-chembl-chembl-drug-indications"]], "pypath.inputs.chembl.chembl_mechanisms": [[156, "pypath-inputs-chembl-chembl-mechanisms"]], "pypath.inputs.chembl.chembl_molecules": [[157, "pypath-inputs-chembl-chembl-molecules"]], "pypath.inputs.chembl.chembl_targets": [[158, "pypath-inputs-chembl-chembl-targets"]], "pypath.inputs.clinvar": [[159, "module-pypath.inputs.clinvar"]], "pypath.inputs.clinvar.clinvar_citations": [[160, "pypath-inputs-clinvar-clinvar-citations"]], "pypath.inputs.clinvar.clinvar_raw": [[161, "pypath-inputs-clinvar-clinvar-raw"]], "pypath.inputs.collectri": [[162, "module-pypath.inputs.collectri"]], "pypath.inputs.collectri.collectri_interactions": [[163, "pypath-inputs-collectri-collectri-interactions"]], "pypath.inputs.collectri.collectri_raw": [[164, "pypath-inputs-collectri-collectri-raw"]], "pypath.inputs.common": [[165, "module-pypath.inputs.common"]], "pypath.inputs.common.csv_sep_change": [[166, "pypath-inputs-common-csv-sep-change"]], "pypath.inputs.common.glom_fields": [[167, "pypath-inputs-common-glom-fields"]], "pypath.inputs.common.json_extract": [[168, "pypath-inputs-common-json-extract"]], "pypath.inputs.common.json_read": [[169, "pypath-inputs-common-json-read"]], "pypath.inputs.common.read_table": [[170, "pypath-inputs-common-read-table"]], "pypath.inputs.common.read_xls": [[171, "pypath-inputs-common-read-xls"]], "pypath.inputs.compath": [[172, "module-pypath.inputs.compath"]], "pypath.inputs.compath.compath_mappings": [[173, "pypath-inputs-compath-compath-mappings"]], "pypath.inputs.compleat": [[174, "module-pypath.inputs.compleat"]], "pypath.inputs.compleat.compleat_complexes": [[175, "pypath-inputs-compleat-compleat-complexes"]], "pypath.inputs.compleat.compleat_raw": [[176, "pypath-inputs-compleat-compleat-raw"]], "pypath.inputs.complexportal": [[177, "module-pypath.inputs.complexportal"]], "pypath.inputs.complexportal.complexportal_complexes": [[178, "pypath-inputs-complexportal-complexportal-complexes"]], "pypath.inputs.comppi": [[179, "module-pypath.inputs.comppi"]], "pypath.inputs.comppi.comppi_interaction_locations": [[180, "pypath-inputs-comppi-comppi-interaction-locations"]], "pypath.inputs.comppi.comppi_locations": [[181, "pypath-inputs-comppi-comppi-locations"]], "pypath.inputs.connectomedb": [[182, "module-pypath.inputs.connectomedb"]], "pypath.inputs.connectomedb.connectomedb_annotations": [[183, "pypath-inputs-connectomedb-connectomedb-annotations"]], "pypath.inputs.connectomedb.connectomedb_interactions": [[184, "pypath-inputs-connectomedb-connectomedb-interactions"]], "pypath.inputs.corum": [[185, "module-pypath.inputs.corum"]], "pypath.inputs.corum.corum_complexes": [[186, "pypath-inputs-corum-corum-complexes"]], "pypath.inputs.cosmic": [[187, "module-pypath.inputs.cosmic"]], "pypath.inputs.cosmic.cancer_gene_census_annotations": [[188, "pypath-inputs-cosmic-cancer-gene-census-annotations"]], "pypath.inputs.cpad": [[189, "module-pypath.inputs.cpad"]], "pypath.inputs.cpad.cpad_annotations": [[190, "pypath-inputs-cpad-cpad-annotations"]], "pypath.inputs.cpad.cpad_pathway_cancer": [[191, "pypath-inputs-cpad-cpad-pathway-cancer"]], "pypath.inputs.cpad.get_cpad": [[192, "pypath-inputs-cpad-get-cpad"]], "pypath.inputs.cpdb": [[193, "module-pypath.inputs.cpdb"]], "pypath.inputs.cpdb.cpdb_interactions": [[194, "pypath-inputs-cpdb-cpdb-interactions"]], "pypath.inputs.cpdb.cpdb_interactions_ltp": [[195, "pypath-inputs-cpdb-cpdb-interactions-ltp"]], "pypath.inputs.credentials": [[196, "module-pypath.inputs.credentials"]], "pypath.inputs.credentials.credentials": [[197, "pypath-inputs-credentials-credentials"]], "pypath.inputs.csa": [[198, "module-pypath.inputs.csa"]], "pypath.inputs.csa.get_csa": [[199, "pypath-inputs-csa-get-csa"]], "pypath.inputs.cspa": [[200, "module-pypath.inputs.cspa"]], "pypath.inputs.cspa.cspa_annotations": [[201, "pypath-inputs-cspa-cspa-annotations"]], "pypath.inputs.cspa.cspa_cell_type_annotations": [[202, "pypath-inputs-cspa-cspa-cell-type-annotations"]], "pypath.inputs.cspa.cspa_cell_types": [[203, "pypath-inputs-cspa-cspa-cell-types"]], "pypath.inputs.ctdbase": [[204, "module-pypath.inputs.ctdbase"]], "pypath.inputs.ctdbase.ctdbase_relations": [[205, "pypath-inputs-ctdbase-ctdbase-relations"]], "pypath.inputs.ctdbase.ctdbase_vocabulary": [[206, "pypath-inputs-ctdbase-ctdbase-vocabulary"]], "pypath.inputs.cytosig": [[207, "module-pypath.inputs.cytosig"]], "pypath.inputs.cytosig.cytosig_annotations": [[208, "pypath-inputs-cytosig-cytosig-annotations"]], "pypath.inputs.cytosig.cytosig_df": [[209, "pypath-inputs-cytosig-cytosig-df"]], "pypath.inputs.dbptm": [[210, "module-pypath.inputs.dbptm"]], "pypath.inputs.dbptm.dbptm_enzyme_substrate": [[211, "pypath-inputs-dbptm-dbptm-enzyme-substrate"]], "pypath.inputs.dbptm.dbptm_enzyme_substrate_old": [[212, "pypath-inputs-dbptm-dbptm-enzyme-substrate-old"]], "pypath.inputs.dbptm.dbptm_interactions": [[213, "pypath-inputs-dbptm-dbptm-interactions"]], "pypath.inputs.ddinter": [[214, "module-pypath.inputs.ddinter"]], "pypath.inputs.ddinter.ddinter_drug_interactions": [[215, "pypath-inputs-ddinter-ddinter-drug-interactions"]], "pypath.inputs.ddinter.ddinter_identifiers": [[216, "pypath-inputs-ddinter-ddinter-identifiers"]], "pypath.inputs.ddinter.ddinter_interactions": [[217, "pypath-inputs-ddinter-ddinter-interactions"]], "pypath.inputs.ddinter.ddinter_mappings": [[218, "pypath-inputs-ddinter-ddinter-mappings"]], "pypath.inputs.ddinter.ddinter_n_drugs": [[219, "pypath-inputs-ddinter-ddinter-n-drugs"]], "pypath.inputs.deathdomain": [[220, "module-pypath.inputs.deathdomain"]], "pypath.inputs.deathdomain.deathdomain_interactions": [[221, "pypath-inputs-deathdomain-deathdomain-interactions"]], "pypath.inputs.deathdomain.deathdomain_interactions_rescued": [[222, "pypath-inputs-deathdomain-deathdomain-interactions-rescued"]], "pypath.inputs.depod": [[223, "module-pypath.inputs.depod"]], "pypath.inputs.depod.depod_enzyme_substrate": [[224, "pypath-inputs-depod-depod-enzyme-substrate"]], "pypath.inputs.depod.depod_interactions": [[225, "pypath-inputs-depod-depod-interactions"]], "pypath.inputs.dgidb": [[226, "module-pypath.inputs.dgidb"]], "pypath.inputs.dgidb.dgidb_annotations": [[227, "pypath-inputs-dgidb-dgidb-annotations"]], "pypath.inputs.dgidb.dgidb_interactions": [[228, "pypath-inputs-dgidb-dgidb-interactions"]], "pypath.inputs.dgidb.get_dgidb_old": [[229, "pypath-inputs-dgidb-get-dgidb-old"]], "pypath.inputs.dip": [[230, "module-pypath.inputs.dip"]], "pypath.inputs.dip.dip_interactions": [[231, "pypath-inputs-dip-dip-interactions"]], "pypath.inputs.dip.dip_login": [[232, "pypath-inputs-dip-dip-login"]], "pypath.inputs.diseases": [[233, "module-pypath.inputs.diseases"]], "pypath.inputs.diseases.diseases_general": [[234, "pypath-inputs-diseases-diseases-general"]], "pypath.inputs.diseases.experiments_filtered": [[235, "pypath-inputs-diseases-experiments-filtered"]], "pypath.inputs.diseases.experiments_full": [[236, "pypath-inputs-diseases-experiments-full"]], "pypath.inputs.diseases.knowledge_filtered": [[237, "pypath-inputs-diseases-knowledge-filtered"]], "pypath.inputs.diseases.knowledge_full": [[238, "pypath-inputs-diseases-knowledge-full"]], "pypath.inputs.diseases.textmining_filtered": [[239, "pypath-inputs-diseases-textmining-filtered"]], "pypath.inputs.diseases.textmining_full": [[240, "pypath-inputs-diseases-textmining-full"]], "pypath.inputs.domino": [[241, "module-pypath.inputs.domino"]], "pypath.inputs.domino.domino_ddi": [[242, "pypath-inputs-domino-domino-ddi"]], "pypath.inputs.domino.domino_enzsub": [[243, "pypath-inputs-domino-domino-enzsub"]], "pypath.inputs.domino.domino_interactions": [[244, "pypath-inputs-domino-domino-interactions"]], "pypath.inputs.domino.get_domino": [[245, "pypath-inputs-domino-get-domino"]], "pypath.inputs.dorothea": [[246, "module-pypath.inputs.dorothea"]], "pypath.inputs.dorothea.DorotheaInteraction": [[247, "pypath-inputs-dorothea-dorotheainteraction"]], "pypath.inputs.dorothea.dorothea_full_raw": [[248, "pypath-inputs-dorothea-dorothea-full-raw"]], "pypath.inputs.dorothea.dorothea_interactions": [[249, "pypath-inputs-dorothea-dorothea-interactions"]], "Details": [[249, "details"], [250, "details"], [251, "details"], [253, "details"], [255, "details"], [256, "details"]], "pypath.inputs.dorothea.dorothea_interactions_old": [[250, "pypath-inputs-dorothea-dorothea-interactions-old"]], "pypath.inputs.dorothea.dorothea_old_csv": [[251, "pypath-inputs-dorothea-dorothea-old-csv"]], "pypath.inputs.dorothea.dorothea_rda_raw": [[252, "pypath-inputs-dorothea-dorothea-rda-raw"]], "pypath.inputs.dorothea.get_dorothea_old": [[253, "pypath-inputs-dorothea-get-dorothea-old"]], "pypath.inputs.dorothea.get_tfregulons": [[254, "pypath-inputs-dorothea-get-tfregulons"]], "pypath.inputs.dorothea.tfregulons_interactions": [[255, "pypath-inputs-dorothea-tfregulons-interactions"]], "pypath.inputs.dorothea.tfregulons_interactions_old": [[256, "pypath-inputs-dorothea-tfregulons-interactions-old"]], "pypath.inputs.drugbank": [[257, "module-pypath.inputs.drugbank"]], "pypath.inputs.drugbank.DrugbankFull": [[258, "pypath-inputs-drugbank-drugbankfull"]], "pypath.inputs.drugbank.drugbank_annotations": [[259, "pypath-inputs-drugbank-drugbank-annotations"]], "pypath.inputs.drugbank.drugbank_drugs": [[260, "pypath-inputs-drugbank-drugbank-drugs"]], "pypath.inputs.drugbank.drugbank_interactions": [[261, "pypath-inputs-drugbank-drugbank-interactions"]], "pypath.inputs.drugbank.drugbank_mapping": [[262, "pypath-inputs-drugbank-drugbank-mapping"]], "pypath.inputs.drugbank.drugbank_raw_interactions": [[263, "pypath-inputs-drugbank-drugbank-raw-interactions"]], "pypath.inputs.drugcentral": [[264, "module-pypath.inputs.drugcentral"]], "pypath.inputs.drugcentral.drugcentral_drugs": [[265, "pypath-inputs-drugcentral-drugcentral-drugs"]], "pypath.inputs.drugcentral.drugcentral_interactions": [[266, "pypath-inputs-drugcentral-drugcentral-interactions"]], "pypath.inputs.drugcentral.drugcentral_mapping": [[267, "pypath-inputs-drugcentral-drugcentral-mapping"]], "pypath.inputs.ebi": [[268, "module-pypath.inputs.ebi"]], "pypath.inputs.ebi.ebi_rest": [[269, "pypath-inputs-ebi-ebi-rest"]], "pypath.inputs.elm": [[270, "module-pypath.inputs.elm"]], "pypath.inputs.elm.elm_classes": [[271, "pypath-inputs-elm-elm-classes"]], "pypath.inputs.elm.elm_domains": [[272, "pypath-inputs-elm-elm-domains"]], "pypath.inputs.elm.elm_instances": [[273, "pypath-inputs-elm-elm-instances"]], "pypath.inputs.elm.elm_interactions": [[274, "pypath-inputs-elm-elm-interactions"]], "pypath.inputs.embopress": [[275, "module-pypath.inputs.embopress"]], "pypath.inputs.embopress.embopress_supplementary": [[276, "pypath-inputs-embopress-embopress-supplementary"]], "pypath.inputs.embrace": [[277, "module-pypath.inputs.embrace"]], "pypath.inputs.embrace.embrace_annotations": [[278, "pypath-inputs-embrace-embrace-annotations"]], "pypath.inputs.embrace.embrace_interactions": [[279, "pypath-inputs-embrace-embrace-interactions"]], "pypath.inputs.embrace.embrace_raw": [[280, "pypath-inputs-embrace-embrace-raw"]], "pypath.inputs.embrace.embrace_translated": [[281, "pypath-inputs-embrace-embrace-translated"]], "pypath.inputs.encode": [[282, "module-pypath.inputs.encode"]], "pypath.inputs.encode.encode_tf_mirna_interactions": [[283, "pypath-inputs-encode-encode-tf-mirna-interactions"]], "pypath.inputs.ensembl": [[284, "module-pypath.inputs.ensembl"]], "pypath.inputs.ensembl.ensembl_organisms": [[285, "pypath-inputs-ensembl-ensembl-organisms"]], "pypath.inputs.eutils": [[286, "module-pypath.inputs.eutils"]], "pypath.inputs.eutils.esummary": [[287, "pypath-inputs-eutils-esummary"]], "pypath.inputs.exocarta": [[288, "module-pypath.inputs.exocarta"]], "pypath.inputs.exocarta.get_exocarta": [[289, "pypath-inputs-exocarta-get-exocarta"]], "pypath.inputs.exocarta.get_vesiclepedia": [[290, "pypath-inputs-exocarta-get-vesiclepedia"]], "pypath.inputs.expasy": [[291, "module-pypath.inputs.expasy"]], "pypath.inputs.expasy.expasy_enzyme_classes": [[292, "pypath-inputs-expasy-expasy-enzyme-classes"]], "pypath.inputs.expasy.expasy_enzymes": [[293, "pypath-inputs-expasy-expasy-enzymes"]], "pypath.inputs.genecards": [[294, "module-pypath.inputs.genecards"]], "pypath.inputs.genecards.genecards_datasheet": [[295, "pypath-inputs-genecards-genecards-datasheet"]], "pypath.inputs.genecards.genecards_soup": [[296, "pypath-inputs-genecards-genecards-soup"]], "pypath.inputs.genecards.genecards_summaries": [[297, "pypath-inputs-genecards-genecards-summaries"]], "pypath.inputs.get_method": [[298, "pypath-inputs-get-method"]], "pypath.inputs.go": [[299, "module-pypath.inputs.go"]], "pypath.inputs.go.get_go_desc": [[300, "pypath-inputs-go-get-go-desc"]], "pypath.inputs.go.get_go_quick": [[301, "pypath-inputs-go-get-go-quick"]], "pypath.inputs.go.get_goslim": [[302, "pypath-inputs-go-get-goslim"]], "pypath.inputs.go.go_ancestors": [[303, "pypath-inputs-go-go-ancestors"]], "pypath.inputs.go.go_ancestors_goose": [[304, "pypath-inputs-go-go-ancestors-goose"]], "pypath.inputs.go.go_ancestors_quickgo": [[305, "pypath-inputs-go-go-ancestors-quickgo"]], "pypath.inputs.go.go_annotations": [[306, "pypath-inputs-go-go-annotations"]], "pypath.inputs.go.go_annotations_all": [[307, "pypath-inputs-go-go-annotations-all"]], "pypath.inputs.go.go_annotations_goa": [[308, "pypath-inputs-go-go-annotations-goa"]], "pypath.inputs.go.go_annotations_goose": [[309, "pypath-inputs-go-go-annotations-goose"]], "pypath.inputs.go.go_annotations_quickgo": [[310, "pypath-inputs-go-go-annotations-quickgo"]], "pypath.inputs.go.go_annotations_solr": [[311, "pypath-inputs-go-go-annotations-solr"]], "pypath.inputs.go.go_annotations_uniprot": [[312, "pypath-inputs-go-go-annotations-uniprot"]], "pypath.inputs.go.go_descendants": [[313, "pypath-inputs-go-go-descendants"]], "pypath.inputs.go.go_descendants_goose": [[314, "pypath-inputs-go-go-descendants-goose"]], "pypath.inputs.go.go_descendants_quickgo": [[315, "pypath-inputs-go-go-descendants-quickgo"]], "pypath.inputs.go.go_descendants_to_ancestors": [[316, "pypath-inputs-go-go-descendants-to-ancestors"]], "pypath.inputs.go.go_terms": [[317, "pypath-inputs-go-go-terms"]], "pypath.inputs.go.go_terms_goose": [[318, "pypath-inputs-go-go-terms-goose"]], "pypath.inputs.go.go_terms_quickgo": [[319, "pypath-inputs-go-go-terms-quickgo"]], "pypath.inputs.go.go_terms_solr": [[320, "pypath-inputs-go-go-terms-solr"]], "pypath.inputs.gpcrdb": [[321, "module-pypath.inputs.gpcrdb"]], "pypath.inputs.gpcrdb.gpcrdb_annotations": [[322, "pypath-inputs-gpcrdb-gpcrdb-annotations"]], "pypath.inputs.graphviz": [[323, "module-pypath.inputs.graphviz"]], "pypath.inputs.graphviz.graphviz_attrs": [[324, "pypath-inputs-graphviz-graphviz-attrs"]], "pypath.inputs.guide2pharma": [[325, "module-pypath.inputs.guide2pharma"]], "pypath.inputs.guide2pharma.guide2pharma_complexes": [[326, "pypath-inputs-guide2pharma-guide2pharma-complexes"]], "pypath.inputs.guide2pharma.guide2pharma_download": [[327, "pypath-inputs-guide2pharma-guide2pharma-download"]], "pypath.inputs.guide2pharma.guide2pharma_interactions": [[328, "pypath-inputs-guide2pharma-guide2pharma-interactions"]], "pypath.inputs.gutmgene": [[329, "module-pypath.inputs.gutmgene"]], "pypath.inputs.gutmgene.GutmgeneAnnotation": [[330, "pypath-inputs-gutmgene-gutmgeneannotation"]], "pypath.inputs.gutmgene.GutmgeneRaw": [[331, "pypath-inputs-gutmgene-gutmgeneraw"]], "pypath.inputs.gutmgene.gutmgene_annotations": [[332, "pypath-inputs-gutmgene-gutmgene-annotations"]], "pypath.inputs.gutmgene.gutmgene_raw": [[333, "pypath-inputs-gutmgene-gutmgene-raw"]], "pypath.inputs.havugimana": [[334, "module-pypath.inputs.havugimana"]], "pypath.inputs.havugimana.get_havugimana": [[335, "pypath-inputs-havugimana-get-havugimana"]], "pypath.inputs.havugimana.havugimana_complexes": [[336, "pypath-inputs-havugimana-havugimana-complexes"]], "pypath.inputs.hgnc": [[337, "module-pypath.inputs.hgnc"]], "pypath.inputs.hgnc.hgnc_genegroups": [[338, "pypath-inputs-hgnc-hgnc-genegroups"]], "pypath.inputs.hippie": [[339, "module-pypath.inputs.hippie"]], "pypath.inputs.hippie.hippie_interactions": [[340, "pypath-inputs-hippie-hippie-interactions"]], "pypath.inputs.hmdb": [[341, "module-pypath.inputs.hmdb"]], "pypath.inputs.hmdb.common": [[342, "module-pypath.inputs.hmdb.common"]], "pypath.inputs.hmdb.common.iter": [[343, "pypath-inputs-hmdb-common-iter"]], "pypath.inputs.hmdb.common.mapping": [[344, "pypath-inputs-hmdb-common-mapping"]], "pypath.inputs.hmdb.common.raw": [[345, "pypath-inputs-hmdb-common-raw"]], "pypath.inputs.hmdb.common.table": [[346, "pypath-inputs-hmdb-common-table"]], "pypath.inputs.hmdb.metabolites": [[347, "module-pypath.inputs.hmdb.metabolites"]], "pypath.inputs.hmdb.metabolites.iter": [[348, "pypath-inputs-hmdb-metabolites-iter"]], "pypath.inputs.hmdb.metabolites.mapping": [[349, "pypath-inputs-hmdb-metabolites-mapping"]], "pypath.inputs.hmdb.metabolites.raw": [[350, "pypath-inputs-hmdb-metabolites-raw"]], "pypath.inputs.hmdb.metabolites.table": [[351, "pypath-inputs-hmdb-metabolites-table"]], "pypath.inputs.hmdb.proteins": [[352, "module-pypath.inputs.hmdb.proteins"]], "pypath.inputs.hmdb.proteins.iter": [[353, "pypath-inputs-hmdb-proteins-iter"]], "pypath.inputs.hmdb.proteins.mapping": [[354, "pypath-inputs-hmdb-proteins-mapping"]], "pypath.inputs.hmdb.proteins.raw": [[355, "pypath-inputs-hmdb-proteins-raw"]], "pypath.inputs.hmdb.proteins.table": [[356, "pypath-inputs-hmdb-proteins-table"]], "pypath.inputs.hmdb.schema": [[357, "module-pypath.inputs.hmdb.schema"]], "pypath.inputs.hmdb.schema.common": [[358, "module-pypath.inputs.hmdb.schema.common"]], "pypath.inputs.hmdb.schema.common.Field": [[359, "pypath-inputs-hmdb-schema-common-field"]], "pypath.inputs.hmdb.schema.metabolites": [[360, "module-pypath.inputs.hmdb.schema.metabolites"]], "pypath.inputs.hmdb.schema.proteins": [[361, "module-pypath.inputs.hmdb.schema.proteins"]], "pypath.inputs.hmdb.structures": [[362, "module-pypath.inputs.hmdb.structures"]], "pypath.inputs.hmdb.structures.sdf": [[363, "pypath-inputs-hmdb-structures-sdf"]], "pypath.inputs.hmdb.visual": [[364, "module-pypath.inputs.hmdb.visual"]], "pypath.inputs.hmdb.visual.show_structure": [[365, "pypath-inputs-hmdb-visual-show-structure"]], "pypath.inputs.hmdb.visual.structure_svg": [[366, "pypath-inputs-hmdb-visual-structure-svg"]], "pypath.inputs.hmdb.xml": [[367, "module-pypath.inputs.hmdb.xml"]], "pypath.inputs.hmdb.xml.hmdb_xml": [[368, "pypath-inputs-hmdb-xml-hmdb-xml"]], "pypath.inputs.homologene": [[369, "module-pypath.inputs.homologene"]], "pypath.inputs.homologene.get_homologene": [[370, "pypath-inputs-homologene-get-homologene"]], "pypath.inputs.homologene.homologene_dict": [[371, "pypath-inputs-homologene-homologene-dict"]], "pypath.inputs.homologene.homologene_uniprot_dict": [[372, "pypath-inputs-homologene-homologene-uniprot-dict"]], "pypath.inputs.hpmr": [[373, "module-pypath.inputs.hpmr"]], "pypath.inputs.hpmr.HpmrInteraction": [[374, "pypath-inputs-hpmr-hpmrinteraction"]], "pypath.inputs.hpmr.get_hpmr": [[375, "pypath-inputs-hpmr-get-hpmr"]], "pypath.inputs.hpmr.hpmr_annotations": [[376, "pypath-inputs-hpmr-hpmr-annotations"]], "pypath.inputs.hpmr.hpmr_complexes": [[377, "pypath-inputs-hpmr-hpmr-complexes"]], "pypath.inputs.hpmr.hpmr_interactions": [[378, "pypath-inputs-hpmr-hpmr-interactions"]], "pypath.inputs.hpo": [[379, "module-pypath.inputs.hpo"]], "pypath.inputs.hpo.hpo_annotations": [[380, "pypath-inputs-hpo-hpo-annotations"]], "pypath.inputs.hpo.hpo_diseases": [[381, "pypath-inputs-hpo-hpo-diseases"]], "pypath.inputs.hpo.hpo_ontology": [[382, "pypath-inputs-hpo-hpo-ontology"]], "pypath.inputs.hpo.hpo_terms": [[383, "pypath-inputs-hpo-hpo-terms"]], "pypath.inputs.hprd": [[384, "module-pypath.inputs.hprd"]], "pypath.inputs.hprd.get_hprd": [[385, "pypath-inputs-hprd-get-hprd"]], "pypath.inputs.hprd.hprd_enzyme_substrate": [[386, "pypath-inputs-hprd-hprd-enzyme-substrate"]], "pypath.inputs.hprd.hprd_interactions": [[387, "pypath-inputs-hprd-hprd-interactions"]], "pypath.inputs.hprd.hprd_interactions_htp": [[388, "pypath-inputs-hprd-hprd-interactions-htp"]], "pypath.inputs.htri": [[389, "module-pypath.inputs.htri"]], "pypath.inputs.htri.htri_interactions": [[390, "pypath-inputs-htri-htri-interactions"]], "pypath.inputs.humancellmap": [[391, "module-pypath.inputs.humancellmap"]], "pypath.inputs.humancellmap.humancellmap_annotations": [[392, "pypath-inputs-humancellmap-humancellmap-annotations"]], "pypath.inputs.humap": [[393, "module-pypath.inputs.humap"]], "pypath.inputs.humap.humap2_complexes": [[394, "pypath-inputs-humap-humap2-complexes"]], "pypath.inputs.humap.humap_complexes": [[395, "pypath-inputs-humap-humap-complexes"]], "pypath.inputs.humsavar": [[396, "module-pypath.inputs.humsavar"]], "pypath.inputs.humsavar.uniprot_variants": [[397, "pypath-inputs-humsavar-uniprot-variants"]], "pypath.inputs.huri": [[398, "module-pypath.inputs.huri"]], "pypath.inputs.huri.hi_i_interactions": [[399, "pypath-inputs-huri-hi-i-interactions"]], "pypath.inputs.huri.hi_ii_interactions": [[400, "pypath-inputs-huri-hi-ii-interactions"]], "pypath.inputs.huri.hi_iii_old": [[401, "pypath-inputs-huri-hi-iii-old"]], "pypath.inputs.huri.hi_union_interactions": [[402, "pypath-inputs-huri-hi-union-interactions"]], "pypath.inputs.huri.huri_interactions": [[403, "pypath-inputs-huri-huri-interactions"]], "pypath.inputs.huri.lit_bm_13_interactions": [[404, "pypath-inputs-huri-lit-bm-13-interactions"]], "pypath.inputs.huri.lit_bm_17_interactions": [[405, "pypath-inputs-huri-lit-bm-17-interactions"]], "pypath.inputs.huri.lit_bm_interactions": [[406, "pypath-inputs-huri-lit-bm-interactions"]], "pypath.inputs.huri.rolland_hi_ii_14": [[407, "pypath-inputs-huri-rolland-hi-ii-14"]], "pypath.inputs.huri.vidal_hi_iii_old": [[408, "pypath-inputs-huri-vidal-hi-iii-old"]], "pypath.inputs.huri.yang2016_interactions": [[409, "pypath-inputs-huri-yang2016-interactions"]], "pypath.inputs.huri.yu2011_interactions": [[410, "pypath-inputs-huri-yu2011-interactions"]], "pypath.inputs.i3d": [[411, "module-pypath.inputs.i3d"]], "pypath.inputs.i3d.get_i3d": [[412, "pypath-inputs-i3d-get-i3d"]], "pypath.inputs.icellnet": [[413, "module-pypath.inputs.icellnet"]], "pypath.inputs.icellnet.IcellnetRecord": [[414, "pypath-inputs-icellnet-icellnetrecord"]], "pypath.inputs.icellnet.icellnet_annotations": [[415, "pypath-inputs-icellnet-icellnet-annotations"]], "pypath.inputs.icellnet.icellnet_complexes": [[416, "pypath-inputs-icellnet-icellnet-complexes"]], "pypath.inputs.icellnet.icellnet_interactions": [[417, "pypath-inputs-icellnet-icellnet-interactions"]], "pypath.inputs.ielm": [[418, "module-pypath.inputs.ielm"]], "pypath.inputs.ielm.get_ielm": [[419, "pypath-inputs-ielm-get-ielm"]], "pypath.inputs.ielm.get_ielm_huge": [[420, "pypath-inputs-ielm-get-ielm-huge"]], "pypath.inputs.imweb": [[421, "module-pypath.inputs.imweb"]], "pypath.inputs.imweb.get_imweb": [[422, "pypath-inputs-imweb-get-imweb"]], "pypath.inputs.imweb.get_imweb_req": [[423, "pypath-inputs-imweb-get-imweb-req"]], "pypath.inputs.innatedb": [[424, "module-pypath.inputs.innatedb"]], "pypath.inputs.innatedb.innatedb_interactions": [[425, "pypath-inputs-innatedb-innatedb-interactions"]], "pypath.inputs.instruct": [[426, "module-pypath.inputs.instruct"]], "pypath.inputs.instruct.get_instruct": [[427, "pypath-inputs-instruct-get-instruct"]], "pypath.inputs.instruct.get_instruct_offsets": [[428, "pypath-inputs-instruct-get-instruct-offsets"]], "pypath.inputs.intact": [[429, "module-pypath.inputs.intact"]], "pypath.inputs.intact.intact_interactions": [[430, "pypath-inputs-intact-intact-interactions"]], "pypath.inputs.integrins": [[431, "module-pypath.inputs.integrins"]], "pypath.inputs.integrins.get_integrins": [[432, "pypath-inputs-integrins-get-integrins"]], "pypath.inputs.interpro": [[433, "module-pypath.inputs.interpro"]], "pypath.inputs.interpro.interpro2go_annotations": [[434, "pypath-inputs-interpro-interpro2go-annotations"]], "pypath.inputs.interpro.interpro_annotations": [[435, "pypath-inputs-interpro-interpro-annotations"]], "pypath.inputs.interpro.interpro_entries": [[436, "pypath-inputs-interpro-interpro-entries"]], "pypath.inputs.interpro.interpro_xrefs": [[437, "pypath-inputs-interpro-interpro-xrefs"]], "pypath.inputs.intogen": [[438, "module-pypath.inputs.intogen"]], "pypath.inputs.intogen.intogen_annotations": [[439, "pypath-inputs-intogen-intogen-annotations"]], "pypath.inputs.ipi": [[440, "module-pypath.inputs.ipi"]], "pypath.inputs.ipi.ipi_uniprot": [[441, "pypath-inputs-ipi-ipi-uniprot"]], "pypath.inputs.iptmnet": [[442, "module-pypath.inputs.iptmnet"]], "pypath.inputs.iptmnet.IptmnetInteraction": [[443, "pypath-inputs-iptmnet-iptmnetinteraction"]], "pypath.inputs.iptmnet.iptmnet_interactions": [[444, "pypath-inputs-iptmnet-iptmnet-interactions"]], "pypath.inputs.italk": [[445, "module-pypath.inputs.italk"]], "pypath.inputs.italk.italk_annotations": [[446, "pypath-inputs-italk-italk-annotations"]], "pypath.inputs.italk.italk_interactions": [[447, "pypath-inputs-italk-italk-interactions"]], "pypath.inputs.italk.italk_raw": [[448, "pypath-inputs-italk-italk-raw"]], "pypath.inputs.kea": [[449, "module-pypath.inputs.kea"]], "pypath.inputs.kea.kea_enzyme_substrate": [[450, "pypath-inputs-kea-kea-enzyme-substrate"]], "pypath.inputs.kea.kea_interactions": [[451, "pypath-inputs-kea-kea-interactions"]], "pypath.inputs.kegg": [[452, "module-pypath.inputs.kegg"]], "pypath.inputs.kegg.KeggPathway": [[453, "pypath-inputs-kegg-keggpathway"]], "pypath.inputs.kegg.kegg_dbget": [[454, "pypath-inputs-kegg-kegg-dbget"]], "pypath.inputs.kegg.kegg_interactions": [[455, "pypath-inputs-kegg-kegg-interactions"]], "pypath.inputs.kegg.kegg_medicus": [[456, "pypath-inputs-kegg-kegg-medicus"]], "pypath.inputs.kegg.kegg_medicus_complexes": [[457, "pypath-inputs-kegg-kegg-medicus-complexes"]], "pypath.inputs.kegg.kegg_medicus_interactions": [[458, "pypath-inputs-kegg-kegg-medicus-interactions"]], "pypath.inputs.kegg.kegg_pathway_annotations": [[459, "pypath-inputs-kegg-kegg-pathway-annotations"]], "pypath.inputs.kegg.kegg_pathway_annotations_pathwaycommons": [[460, "pypath-inputs-kegg-kegg-pathway-annotations-pathwaycommons"]], "pypath.inputs.kegg.kegg_pathways": [[461, "pypath-inputs-kegg-kegg-pathways"]], "pypath.inputs.kegg_api": [[462, "module-pypath.inputs.kegg_api"]], "pypath.inputs.kegg_api.disease_to_drug": [[463, "pypath-inputs-kegg-api-disease-to-drug"]], "pypath.inputs.kegg_api.disease_to_gene": [[464, "pypath-inputs-kegg-api-disease-to-gene"]], "pypath.inputs.kegg_api.disease_to_pathway": [[465, "pypath-inputs-kegg-api-disease-to-pathway"]], "pypath.inputs.kegg_api.drug_to_disease": [[466, "pypath-inputs-kegg-api-drug-to-disease"]], "pypath.inputs.kegg_api.drug_to_drug": [[467, "pypath-inputs-kegg-api-drug-to-drug"]], "pypath.inputs.kegg_api.drug_to_gene": [[468, "pypath-inputs-kegg-api-drug-to-gene"]], "pypath.inputs.kegg_api.drug_to_pathway": [[469, "pypath-inputs-kegg-api-drug-to-pathway"]], "pypath.inputs.kegg_api.gene_to_disease": [[470, "pypath-inputs-kegg-api-gene-to-disease"]], "pypath.inputs.kegg_api.gene_to_drug": [[471, "pypath-inputs-kegg-api-gene-to-drug"]], "pypath.inputs.kegg_api.gene_to_pathway": [[472, "pypath-inputs-kegg-api-gene-to-pathway"]], "pypath.inputs.kegg_api.kegg_drug_to_chebi": [[473, "pypath-inputs-kegg-api-kegg-drug-to-chebi"]], "pypath.inputs.kegg_api.kegg_gene_to_ncbi_geneid": [[474, "pypath-inputs-kegg-api-kegg-gene-to-ncbi-geneid"]], "pypath.inputs.kegg_api.kegg_gene_to_uniprot": [[475, "pypath-inputs-kegg-api-kegg-gene-to-uniprot"]], "pypath.inputs.kegg_api.pathway_to_disease": [[476, "pypath-inputs-kegg-api-pathway-to-disease"]], "pypath.inputs.kegg_api.pathway_to_drug": [[477, "pypath-inputs-kegg-api-pathway-to-drug"]], "pypath.inputs.kegg_api.pathway_to_gene": [[478, "pypath-inputs-kegg-api-pathway-to-gene"]], "pypath.inputs.kinasedotcom": [[479, "module-pypath.inputs.kinasedotcom"]], "pypath.inputs.kinasedotcom.kinasedotcom_annotations": [[480, "pypath-inputs-kinasedotcom-kinasedotcom-annotations"]], "pypath.inputs.kirouac2010": [[481, "module-pypath.inputs.kirouac2010"]], "pypath.inputs.kirouac2010.kirouac2010_interactions": [[482, "pypath-inputs-kirouac2010-kirouac2010-interactions"]], "pypath.inputs.lambert2018": [[483, "module-pypath.inputs.lambert2018"]], "pypath.inputs.lambert2018.lambert2018_annotations": [[484, "pypath-inputs-lambert2018-lambert2018-annotations"]], "pypath.inputs.lambert2018.lambert2018_s1_raw": [[485, "pypath-inputs-lambert2018-lambert2018-s1-raw"]], "pypath.inputs.laudanna": [[486, "module-pypath.inputs.laudanna"]], "pypath.inputs.laudanna.laudanna_directions": [[487, "pypath-inputs-laudanna-laudanna-directions"]], "pypath.inputs.laudanna.laudanna_effects": [[488, "pypath-inputs-laudanna-laudanna-effects"]], "pypath.inputs.li2012": [[489, "module-pypath.inputs.li2012"]], "pypath.inputs.li2012.get_li2012": [[490, "pypath-inputs-li2012-get-li2012"]], "pypath.inputs.li2012.li2012_dmi": [[491, "pypath-inputs-li2012-li2012-dmi"]], "pypath.inputs.li2012.li2012_enzyme_substrate": [[492, "pypath-inputs-li2012-li2012-enzyme-substrate"]], "pypath.inputs.li2012.li2012_interactions": [[493, "pypath-inputs-li2012-li2012-interactions"]], "pypath.inputs.lincs": [[494, "module-pypath.inputs.lincs"]], "pypath.inputs.lincs.lincs_compounds": [[495, "pypath-inputs-lincs-lincs-compounds"]], "pypath.inputs.lmpid": [[496, "module-pypath.inputs.lmpid"]], "pypath.inputs.lmpid.lmpid_dmi": [[497, "pypath-inputs-lmpid-lmpid-dmi"]], "pypath.inputs.lmpid.lmpid_interactions": [[498, "pypath-inputs-lmpid-lmpid-interactions"]], "pypath.inputs.lmpid.load_lmpid": [[499, "pypath-inputs-lmpid-load-lmpid"]], "pypath.inputs.lncdisease": [[500, "module-pypath.inputs.lncdisease"]], "pypath.inputs.lncdisease.lncdisease_interactions": [[501, "pypath-inputs-lncdisease-lncdisease-interactions"]], "pypath.inputs.lncrnadb": [[502, "module-pypath.inputs.lncrnadb"]], "pypath.inputs.lncrnadb.lncrnadb_interactions": [[503, "pypath-inputs-lncrnadb-lncrnadb-interactions"]], "pypath.inputs.locate": [[504, "module-pypath.inputs.locate"]], "pypath.inputs.locate.locate_localizations": [[505, "pypath-inputs-locate-locate-localizations"]], "pypath.inputs.lrdb": [[506, "module-pypath.inputs.lrdb"]], "pypath.inputs.lrdb.LrdbAnnotation": [[507, "pypath-inputs-lrdb-lrdbannotation"]], "pypath.inputs.lrdb.lrdb_annotations": [[508, "pypath-inputs-lrdb-lrdb-annotations"]], "pypath.inputs.lrdb.lrdb_interactions": [[509, "pypath-inputs-lrdb-lrdb-interactions"]], "pypath.inputs.macrophage": [[510, "module-pypath.inputs.macrophage"]], "pypath.inputs.macrophage.macrophage_interactions": [[511, "pypath-inputs-macrophage-macrophage-interactions"]], "pypath.inputs.main": [[512, "module-pypath.inputs.main"]], "pypath.inputs.matrisome": [[513, "module-pypath.inputs.matrisome"]], "pypath.inputs.matrisome.matrisome_annotations": [[514, "pypath-inputs-matrisome-matrisome-annotations"]], "pypath.inputs.matrixdb": [[515, "module-pypath.inputs.matrixdb"]], "pypath.inputs.matrixdb.matrixdb_annotations": [[516, "pypath-inputs-matrixdb-matrixdb-annotations"]], "pypath.inputs.matrixdb.matrixdb_ecm_proteins": [[517, "pypath-inputs-matrixdb-matrixdb-ecm-proteins"]], "pypath.inputs.matrixdb.matrixdb_interactions": [[518, "pypath-inputs-matrixdb-matrixdb-interactions"]], "pypath.inputs.matrixdb.matrixdb_membrane_proteins": [[519, "pypath-inputs-matrixdb-matrixdb-membrane-proteins"]], "pypath.inputs.matrixdb.matrixdb_secreted_proteins": [[520, "pypath-inputs-matrixdb-matrixdb-secreted-proteins"]], "pypath.inputs.mcam": [[521, "module-pypath.inputs.mcam"]], "pypath.inputs.mcam.mcam_cell_adhesion_molecules": [[522, "pypath-inputs-mcam-mcam-cell-adhesion-molecules"]], "pypath.inputs.membranome": [[523, "module-pypath.inputs.membranome"]], "pypath.inputs.membranome.membranome_annotations": [[524, "pypath-inputs-membranome-membranome-annotations"]], "pypath.inputs.mimp": [[525, "module-pypath.inputs.mimp"]], "pypath.inputs.mimp.get_kinase_class": [[526, "pypath-inputs-mimp-get-kinase-class"]], "pypath.inputs.mimp.mimp_enzyme_substrate": [[527, "pypath-inputs-mimp-mimp-enzyme-substrate"]], "pypath.inputs.mimp.mimp_interactions": [[528, "pypath-inputs-mimp-mimp-interactions"]], "pypath.inputs.mir2disease": [[529, "module-pypath.inputs.mir2disease"]], "pypath.inputs.mir2disease.mir2disease_interactions": [[530, "pypath-inputs-mir2disease-mir2disease-interactions"]], "pypath.inputs.mirbase": [[531, "module-pypath.inputs.mirbase"]], "pypath.inputs.mirbase.get_mirbase_aliases": [[532, "pypath-inputs-mirbase-get-mirbase-aliases"]], "pypath.inputs.mirbase.mirbase_ids": [[533, "pypath-inputs-mirbase-mirbase-ids"]], "pypath.inputs.mirbase.mirbase_mature": [[534, "pypath-inputs-mirbase-mirbase-mature"]], "pypath.inputs.mirbase.mirbase_mature_all": [[535, "pypath-inputs-mirbase-mirbase-mature-all"]], "pypath.inputs.mirbase.mirbase_precursor": [[536, "pypath-inputs-mirbase-mirbase-precursor"]], "pypath.inputs.mirbase.mirbase_precursor_all": [[537, "pypath-inputs-mirbase-mirbase-precursor-all"]], "pypath.inputs.mirbase.mirbase_precursor_to_mature": [[538, "pypath-inputs-mirbase-mirbase-precursor-to-mature"]], "pypath.inputs.mirdeathdb": [[539, "module-pypath.inputs.mirdeathdb"]], "pypath.inputs.mirdeathdb.mirdeathdb_interactions": [[540, "pypath-inputs-mirdeathdb-mirdeathdb-interactions"]], "pypath.inputs.mirecords": [[541, "module-pypath.inputs.mirecords"]], "pypath.inputs.mirecords.mirecords_interactions": [[542, "pypath-inputs-mirecords-mirecords-interactions"]], "pypath.inputs.mirtarbase": [[543, "module-pypath.inputs.mirtarbase"]], "pypath.inputs.mirtarbase.mirtarbase_interactions": [[544, "pypath-inputs-mirtarbase-mirtarbase-interactions"]], "pypath.inputs.mitab": [[545, "module-pypath.inputs.mitab"]], "pypath.inputs.mitab.mitab_field_list": [[546, "pypath-inputs-mitab-mitab-field-list"]], "pypath.inputs.mitab.mitab_field_uniprot": [[547, "pypath-inputs-mitab-mitab-field-uniprot"]], "pypath.inputs.mppi": [[548, "module-pypath.inputs.mppi"]], "pypath.inputs.mppi.mppi_interactions": [[549, "pypath-inputs-mppi-mppi-interactions"]], "pypath.inputs.msigdb": [[550, "module-pypath.inputs.msigdb"]], "pypath.inputs.msigdb.msigdb_annotations": [[551, "pypath-inputs-msigdb-msigdb-annotations"]], "pypath.inputs.msigdb.msigdb_download": [[552, "pypath-inputs-msigdb-msigdb-download"]], "pypath.inputs.msigdb.msigdb_download_collections": [[553, "pypath-inputs-msigdb-msigdb-download-collections"]], "pypath.inputs.ncrdeathdb": [[554, "module-pypath.inputs.ncrdeathdb"]], "pypath.inputs.ncrdeathdb.ncrdeathdb_interactions": [[555, "pypath-inputs-ncrdeathdb-ncrdeathdb-interactions"]], "pypath.inputs.negatome": [[556, "module-pypath.inputs.negatome"]], "pypath.inputs.negatome.negatome_interactions": [[557, "pypath-inputs-negatome-negatome-interactions"]], "pypath.inputs.netbiol": [[558, "module-pypath.inputs.netbiol"]], "pypath.inputs.netbiol.arn_interactions": [[559, "pypath-inputs-netbiol-arn-interactions"]], "pypath.inputs.netbiol.nrf2ome_interactions": [[560, "pypath-inputs-netbiol-nrf2ome-interactions"]], "pypath.inputs.netpath": [[561, "module-pypath.inputs.netpath"]], "pypath.inputs.netpath.netpath_interactions": [[562, "pypath-inputs-netpath-netpath-interactions"]], "pypath.inputs.netpath.netpath_names": [[563, "pypath-inputs-netpath-netpath-names"]], "pypath.inputs.netpath.netpath_pathway_annotations": [[564, "pypath-inputs-netpath-netpath-pathway-annotations"]], "pypath.inputs.offsides": [[565, "module-pypath.inputs.offsides"]], "pypath.inputs.offsides.offsides_side_effects": [[566, "pypath-inputs-offsides-offsides-side-effects"]], "pypath.inputs.oma": [[567, "module-pypath.inputs.oma"]], "pypath.inputs.oma.oma_orthologs": [[568, "pypath-inputs-oma-oma-orthologs"]], "pypath.inputs.oma.oma_table": [[569, "pypath-inputs-oma-oma-table"]], "pypath.inputs.ontology": [[570, "module-pypath.inputs.ontology"]], "pypath.inputs.ontology.listof_ontologies": [[571, "pypath-inputs-ontology-listof-ontologies"]], "pypath.inputs.ontology.ontology": [[572, "pypath-inputs-ontology-ontology"]], "pypath.inputs.opentargets": [[573, "module-pypath.inputs.opentargets"]], "pypath.inputs.opentargets.opentargets_adverse_reactions": [[574, "pypath-inputs-opentargets-opentargets-adverse-reactions"]], "pypath.inputs.opentargets.opentargets_baseline_expression": [[575, "pypath-inputs-opentargets-opentargets-baseline-expression"]], "pypath.inputs.opentargets.opentargets_direct_score": [[576, "pypath-inputs-opentargets-opentargets-direct-score"]], "pypath.inputs.opentargets.opentargets_general": [[577, "pypath-inputs-opentargets-opentargets-general"]], "pypath.inputs.opentargets.opentargets_indirect_score": [[578, "pypath-inputs-opentargets-opentargets-indirect-score"]], "pypath.inputs.opm": [[579, "module-pypath.inputs.opm"]], "pypath.inputs.opm.opm_annotations": [[580, "pypath-inputs-opm-opm-annotations"]], "pypath.inputs.oreganno": [[581, "module-pypath.inputs.oreganno"]], "pypath.inputs.oreganno.oreganno_interactions": [[582, "pypath-inputs-oreganno-oreganno-interactions"]], "pypath.inputs.oreganno.oreganno_raw": [[583, "pypath-inputs-oreganno-oreganno-raw"]], "pypath.inputs.panglaodb": [[584, "module-pypath.inputs.panglaodb"]], "pypath.inputs.panglaodb.panglaodb_annotations": [[585, "pypath-inputs-panglaodb-panglaodb-annotations"]], "pypath.inputs.panglaodb.panglaodb_raw": [[586, "pypath-inputs-panglaodb-panglaodb-raw"]], "pypath.inputs.pathophenodb": [[587, "module-pypath.inputs.pathophenodb"]], "pypath.inputs.pathophenodb.DiseasePathogen": [[588, "pypath-inputs-pathophenodb-diseasepathogen"]], "pypath.inputs.pathophenodb.disease_pathogen_interactions": [[589, "pypath-inputs-pathophenodb-disease-pathogen-interactions"]], "pypath.inputs.pathwaycommons": [[590, "module-pypath.inputs.pathwaycommons"]], "pypath.inputs.pathwaycommons.PathwayCommonsInteraction": [[591, "pypath-inputs-pathwaycommons-pathwaycommonsinteraction"]], "pypath.inputs.pathwaycommons.PathwayCommonsResource": [[592, "pypath-inputs-pathwaycommons-pathwaycommonsresource"]], "pypath.inputs.pathwaycommons.pathwaycommons_bind_interactions": [[593, "pypath-inputs-pathwaycommons-pathwaycommons-bind-interactions"]], "pypath.inputs.pathwaycommons.pathwaycommons_biogrid_interactions": [[594, "pypath-inputs-pathwaycommons-pathwaycommons-biogrid-interactions"]], "pypath.inputs.pathwaycommons.pathwaycommons_corum_interactions": [[595, "pypath-inputs-pathwaycommons-pathwaycommons-corum-interactions"]], "pypath.inputs.pathwaycommons.pathwaycommons_dip_interactions": [[596, "pypath-inputs-pathwaycommons-pathwaycommons-dip-interactions"]], "pypath.inputs.pathwaycommons.pathwaycommons_hprd_interactions": [[597, "pypath-inputs-pathwaycommons-pathwaycommons-hprd-interactions"]], "pypath.inputs.pathwaycommons.pathwaycommons_inoh_interactions": [[598, "pypath-inputs-pathwaycommons-pathwaycommons-inoh-interactions"]], "pypath.inputs.pathwaycommons.pathwaycommons_intact_interactions": [[599, "pypath-inputs-pathwaycommons-pathwaycommons-intact-interactions"]], "pypath.inputs.pathwaycommons.pathwaycommons_interactions": [[600, "pypath-inputs-pathwaycommons-pathwaycommons-interactions"]], "pypath.inputs.pathwaycommons.pathwaycommons_kegg_interactions": [[601, "pypath-inputs-pathwaycommons-pathwaycommons-kegg-interactions"]], "pypath.inputs.pathwaycommons.pathwaycommons_netpath_interactions": [[602, "pypath-inputs-pathwaycommons-pathwaycommons-netpath-interactions"]], "pypath.inputs.pathwaycommons.pathwaycommons_panther_interactions": [[603, "pypath-inputs-pathwaycommons-pathwaycommons-panther-interactions"]], "pypath.inputs.pathwaycommons.pathwaycommons_phosphosite_interactions": [[604, "pypath-inputs-pathwaycommons-pathwaycommons-phosphosite-interactions"]], "pypath.inputs.pathwaycommons.pathwaycommons_reactome_interactions": [[605, "pypath-inputs-pathwaycommons-pathwaycommons-reactome-interactions"]], "pypath.inputs.pathwaycommons.pathwaycommons_wikipathways_interactions": [[606, "pypath-inputs-pathwaycommons-pathwaycommons-wikipathways-interactions"]], "pypath.inputs.pazar": [[607, "module-pypath.inputs.pazar"]], "pypath.inputs.pazar.pazar_interactions": [[608, "pypath-inputs-pazar-pazar-interactions"]], "pypath.inputs.pdb": [[609, "module-pypath.inputs.pdb"]], "pypath.inputs.pdb.pdb_chains": [[610, "pypath-inputs-pdb-pdb-chains"]], "pypath.inputs.pdb.pdb_complexes": [[611, "pypath-inputs-pdb-pdb-complexes"]], "pypath.inputs.pdb.pdb_uniprot": [[612, "pypath-inputs-pdb-pdb-uniprot"]], "pypath.inputs.pdzbase": [[613, "module-pypath.inputs.pdzbase"]], "pypath.inputs.pdzbase.pdzbase_interactions": [[614, "pypath-inputs-pdzbase-pdzbase-interactions"]], "pypath.inputs.pepcyber": [[615, "module-pypath.inputs.pepcyber"]], "pypath.inputs.pepcyber.pepcyber_details": [[616, "pypath-inputs-pepcyber-pepcyber-details"]], "pypath.inputs.pepcyber.pepcyber_interactions": [[617, "pypath-inputs-pepcyber-pepcyber-interactions"]], "pypath.inputs.pfam": [[618, "module-pypath.inputs.pfam"]], "pypath.inputs.pfam.pfam_names": [[619, "pypath-inputs-pfam-pfam-names"]], "pypath.inputs.pfam.pfam_pdb": [[620, "pypath-inputs-pfam-pfam-pdb"]], "pypath.inputs.pfam.pfam_regions": [[621, "pypath-inputs-pfam-pfam-regions"]], "pypath.inputs.pfam.pfam_uniprot": [[622, "pypath-inputs-pfam-pfam-uniprot"]], "pypath.inputs.pharos": [[623, "module-pypath.inputs.pharos"]], "pypath.inputs.pharos.pharos_diseases": [[624, "pypath-inputs-pharos-pharos-diseases"]], "pypath.inputs.pharos.pharos_expression": [[625, "pypath-inputs-pharos-pharos-expression"]], "pypath.inputs.pharos.pharos_general": [[626, "pypath-inputs-pharos-pharos-general"]], "pypath.inputs.pharos.pharos_gtex": [[627, "pypath-inputs-pharos-pharos-gtex"]], "pypath.inputs.pharos.pharos_ligands": [[628, "pypath-inputs-pharos-pharos-ligands"]], "pypath.inputs.pharos.pharos_orthologs": [[629, "pypath-inputs-pharos-pharos-orthologs"]], "pypath.inputs.pharos.pharos_targets": [[630, "pypath-inputs-pharos-pharos-targets"]], "pypath.inputs.pharos.pharos_xrefs": [[631, "pypath-inputs-pharos-pharos-xrefs"]], "pypath.inputs.phobius": [[632, "module-pypath.inputs.phobius"]], "pypath.inputs.phobius.phobius_annotations": [[633, "pypath-inputs-phobius-phobius-annotations"]], "pypath.inputs.phosphatome": [[634, "module-pypath.inputs.phosphatome"]], "pypath.inputs.phosphatome.phosphatome_annotations": [[635, "pypath-inputs-phosphatome-phosphatome-annotations"]], "pypath.inputs.phosphoelm": [[636, "module-pypath.inputs.phosphoelm"]], "pypath.inputs.phosphoelm.phosphoelm_enzyme_substrate": [[637, "pypath-inputs-phosphoelm-phosphoelm-enzyme-substrate"]], "pypath.inputs.phosphoelm.phosphoelm_interactions": [[638, "pypath-inputs-phosphoelm-phosphoelm-interactions"]], "pypath.inputs.phosphoelm.phosphoelm_kinases": [[639, "pypath-inputs-phosphoelm-phosphoelm-kinases"]], "pypath.inputs.phosphonetworks": [[640, "module-pypath.inputs.phosphonetworks"]], "pypath.inputs.phosphonetworks.phosphonetworks_enzyme_substrate": [[641, "pypath-inputs-phosphonetworks-phosphonetworks-enzyme-substrate"]], "pypath.inputs.phosphonetworks.phosphonetworks_interactions": [[642, "pypath-inputs-phosphonetworks-phosphonetworks-interactions"]], "pypath.inputs.phosphopoint": [[643, "module-pypath.inputs.phosphopoint"]], "pypath.inputs.phosphopoint.phosphopoint_directions": [[644, "pypath-inputs-phosphopoint-phosphopoint-directions"]], "pypath.inputs.phosphopoint.phosphopoint_interactions": [[645, "pypath-inputs-phosphopoint-phosphopoint-interactions"]], "pypath.inputs.phosphosite": [[646, "module-pypath.inputs.phosphosite"]], "pypath.inputs.phosphosite.phosphosite_directions": [[647, "pypath-inputs-phosphosite-phosphosite-directions"]], "pypath.inputs.phosphosite.phosphosite_enzyme_substrate": [[648, "pypath-inputs-phosphosite-phosphosite-enzyme-substrate"]], "pypath.inputs.phosphosite.phosphosite_interactions": [[649, "pypath-inputs-phosphosite-phosphosite-interactions"]], "pypath.inputs.phosphosite.phosphosite_interactions_all": [[650, "pypath-inputs-phosphosite-phosphosite-interactions-all"]], "pypath.inputs.phosphosite.phosphosite_interactions_curated": [[651, "pypath-inputs-phosphosite-phosphosite-interactions-curated"]], "pypath.inputs.phosphosite.phosphosite_interactions_new": [[652, "pypath-inputs-phosphosite-phosphosite-interactions-new"]], "pypath.inputs.phosphosite.phosphosite_interactions_noref": [[653, "pypath-inputs-phosphosite-phosphosite-interactions-noref"]], "pypath.inputs.phosphosite.phosphosite_ptm_orthology": [[654, "pypath-inputs-phosphosite-phosphosite-ptm-orthology"]], "pypath.inputs.phosphosite.phosphosite_ptms": [[655, "pypath-inputs-phosphosite-phosphosite-ptms"]], "pypath.inputs.phosphosite.phosphosite_regsites": [[656, "pypath-inputs-phosphosite-phosphosite-regsites"]], "pypath.inputs.phosphosite.phosphosite_regsites_one_organism": [[657, "pypath-inputs-phosphosite-phosphosite-regsites-one-organism"]], "pypath.inputs.phosphosite.regsites_tab": [[658, "pypath-inputs-phosphosite-regsites-tab"]], "pypath.inputs.pisa": [[659, "module-pypath.inputs.pisa"]], "pypath.inputs.pisa.PisaBond": [[660, "pypath-inputs-pisa-pisabond"]], "pypath.inputs.pisa.pisa_bonds": [[661, "pypath-inputs-pisa-pisa-bonds"]], "pypath.inputs.pisa.pisa_interfaces": [[662, "pypath-inputs-pisa-pisa-interfaces"]], "pypath.inputs.pro": [[663, "module-pypath.inputs.pro"]], "pypath.inputs.pro.get_pro": [[664, "pypath-inputs-pro-get-pro"]], "pypath.inputs.pro.pro_mapping": [[665, "pypath-inputs-pro-pro-mapping"]], "pypath.inputs.progeny": [[666, "module-pypath.inputs.progeny"]], "pypath.inputs.progeny.progeny_annotations": [[667, "pypath-inputs-progeny-progeny-annotations"]], "pypath.inputs.progeny.progeny_raw": [[668, "pypath-inputs-progeny-progeny-raw"]], "pypath.inputs.proteinatlas": [[669, "module-pypath.inputs.proteinatlas"]], "pypath.inputs.proteinatlas.get_proteinatlas": [[670, "pypath-inputs-proteinatlas-get-proteinatlas"]], "pypath.inputs.proteinatlas.proteinatlas_annotations": [[671, "pypath-inputs-proteinatlas-proteinatlas-annotations"]], "pypath.inputs.proteinatlas.proteinatlas_secretome_annotations": [[672, "pypath-inputs-proteinatlas-proteinatlas-secretome-annotations"]], "pypath.inputs.proteinatlas.proteinatlas_subcellular_annotations": [[673, "pypath-inputs-proteinatlas-proteinatlas-subcellular-annotations"]], "pypath.inputs.proteins": [[674, "module-pypath.inputs.proteins"]], "pypath.inputs.proteins.variants": [[675, "pypath-inputs-proteins-variants"]], "pypath.inputs.protmapper": [[676, "module-pypath.inputs.protmapper"]], "pypath.inputs.protmapper.get_protmapper": [[677, "pypath-inputs-protmapper-get-protmapper"]], "pypath.inputs.protmapper.protmapper_enzyme_substrate": [[678, "pypath-inputs-protmapper-protmapper-enzyme-substrate"]], "pypath.inputs.protmapper.protmapper_interactions": [[679, "pypath-inputs-protmapper-protmapper-interactions"]], "pypath.inputs.pubchem": [[680, "module-pypath.inputs.pubchem"]], "pypath.inputs.pubchem.pubchem_mapping": [[681, "pypath-inputs-pubchem-pubchem-mapping"]], "pypath.inputs.pubmed": [[682, "module-pypath.inputs.pubmed"]], "pypath.inputs.pubmed.get_pmid": [[683, "pypath-inputs-pubmed-get-pmid"]], "pypath.inputs.pubmed.get_pubmeds": [[684, "pypath-inputs-pubmed-get-pubmeds"]], "pypath.inputs.pubmed.only_pmids": [[685, "pypath-inputs-pubmed-only-pmids"]], "pypath.inputs.pubmed.open_pubmed": [[686, "pypath-inputs-pubmed-open-pubmed"]], "pypath.inputs.pubmed.pmids_dict": [[687, "pypath-inputs-pubmed-pmids-dict"]], "pypath.inputs.pubmed.pmids_list": [[688, "pypath-inputs-pubmed-pmids-list"]], "pypath.inputs.ramilowski2015": [[689, "module-pypath.inputs.ramilowski2015"]], "pypath.inputs.ramilowski2015.ramilowski_interactions": [[690, "pypath-inputs-ramilowski2015-ramilowski-interactions"]], "pypath.inputs.ramilowski2015.ramilowski_locations": [[691, "pypath-inputs-ramilowski2015-ramilowski-locations"]], "pypath.inputs.ramp": [[692, "module-pypath.inputs.ramp"]], "pypath.inputs.ramp.ramp_id_types": [[693, "pypath-inputs-ramp-ramp-id-types"]], "pypath.inputs.ramp.ramp_id_types_2": [[694, "pypath-inputs-ramp-ramp-id-types-2"]], "pypath.inputs.ramp.ramp_list_tables": [[695, "pypath-inputs-ramp-ramp-list-tables"]], "pypath.inputs.ramp.ramp_mapping": [[696, "pypath-inputs-ramp-ramp-mapping"]], "pypath.inputs.ramp.ramp_raw": [[697, "pypath-inputs-ramp-ramp-raw"]], "pypath.inputs.ramp.ramp_show_tables": [[698, "pypath-inputs-ramp-ramp-show-tables"]], "pypath.inputs.rdata": [[699, "module-pypath.inputs.rdata"]], "pypath.inputs.reaction": [[700, "module-pypath.inputs.reaction"]], "pypath.inputs.reaction.acsn_biopax": [[701, "pypath-inputs-reaction-acsn-biopax"]], "pypath.inputs.reaction.acsn_interactions_2": [[702, "pypath-inputs-reaction-acsn-interactions-2"]], "pypath.inputs.reaction.get_acsn_effects": [[703, "pypath-inputs-reaction-get-acsn-effects"]], "pypath.inputs.reaction.get_controls": [[704, "pypath-inputs-reaction-get-controls"]], "pypath.inputs.reaction.get_interactions": [[705, "pypath-inputs-reaction-get-interactions"]], "pypath.inputs.reaction.get_reactions": [[706, "pypath-inputs-reaction-get-reactions"]], "pypath.inputs.reaction.get_soup": [[707, "pypath-inputs-reaction-get-soup"]], "pypath.inputs.reaction.panther_biopax": [[708, "pypath-inputs-reaction-panther-biopax"]], "pypath.inputs.reaction.panther_interactions": [[709, "pypath-inputs-reaction-panther-interactions"]], "pypath.inputs.reaction.pid_biopax": [[710, "pypath-inputs-reaction-pid-biopax"]], "pypath.inputs.reaction.pid_interactions": [[711, "pypath-inputs-reaction-pid-interactions"]], "pypath.inputs.reaction.process_complex": [[712, "pypath-inputs-reaction-process-complex"]], "pypath.inputs.reaction.process_controls": [[713, "pypath-inputs-reaction-process-controls"]], "pypath.inputs.reaction.process_reactions": [[714, "pypath-inputs-reaction-process-reactions"]], "pypath.inputs.reaction.reactions_biopax": [[715, "pypath-inputs-reaction-reactions-biopax"]], "pypath.inputs.reaction.reactome_biopax": [[716, "pypath-inputs-reaction-reactome-biopax"]], "pypath.inputs.reaction.reactome_bs": [[717, "pypath-inputs-reaction-reactome-bs"]], "pypath.inputs.reaction.reactome_interactions": [[718, "pypath-inputs-reaction-reactome-interactions"]], "pypath.inputs.reaction.reactome_sbml": [[719, "pypath-inputs-reaction-reactome-sbml"]], "pypath.inputs.reactome": [[720, "module-pypath.inputs.reactome"]], "pypath.inputs.reactome.reactome_chebis": [[721, "pypath-inputs-reactome-reactome-chebis"]], "pypath.inputs.reactome.reactome_pathway_relations": [[722, "pypath-inputs-reactome-reactome-pathway-relations"]], "pypath.inputs.reactome.reactome_pathways": [[723, "pypath-inputs-reactome-reactome-pathways"]], "pypath.inputs.reactome.reactome_uniprots": [[724, "pypath-inputs-reactome-reactome-uniprots"]], "pypath.inputs.scconnect": [[725, "module-pypath.inputs.scconnect"]], "pypath.inputs.scconnect.scconnect_annotations": [[726, "pypath-inputs-scconnect-scconnect-annotations"]], "pypath.inputs.scconnect.scconnect_complexes": [[727, "pypath-inputs-scconnect-scconnect-complexes"]], "pypath.inputs.scconnect.scconnect_interactions": [[728, "pypath-inputs-scconnect-scconnect-interactions"]], "pypath.inputs.science": [[729, "module-pypath.inputs.science"]], "pypath.inputs.science.science_download": [[730, "pypath-inputs-science-science-download"]], "pypath.inputs.sider": [[731, "module-pypath.inputs.sider"]], "pypath.inputs.sider.SiderDrug": [[732, "pypath-inputs-sider-siderdrug"]], "pypath.inputs.sider.SiderSideeffect": [[733, "pypath-inputs-sider-sidersideeffect"]], "pypath.inputs.sider.SiderSideeffectMeddra": [[734, "pypath-inputs-sider-sidersideeffectmeddra"]], "pypath.inputs.sider.SiderSideeffetFrequency": [[735, "pypath-inputs-sider-sidersideeffetfrequency"]], "pypath.inputs.sider.sider_drug_names": [[736, "pypath-inputs-sider-sider-drug-names"]], "pypath.inputs.sider.sider_meddra_side_effects": [[737, "pypath-inputs-sider-sider-meddra-side-effects"]], "pypath.inputs.sider.sider_side_effect_frequencies": [[738, "pypath-inputs-sider-sider-side-effect-frequencies"]], "pypath.inputs.sider.sider_side_effects": [[739, "pypath-inputs-sider-sider-side-effects"]], "pypath.inputs.signalink": [[740, "module-pypath.inputs.signalink"]], "pypath.inputs.signalink.signalink_annotations": [[741, "pypath-inputs-signalink-signalink-annotations"]], "pypath.inputs.signalink.signalink_function_annotations": [[742, "pypath-inputs-signalink-signalink-function-annotations"]], "pypath.inputs.signalink.signalink_interactions": [[743, "pypath-inputs-signalink-signalink-interactions"]], "pypath.inputs.signalink.signalink_pathway_annotations": [[744, "pypath-inputs-signalink-signalink-pathway-annotations"]], "pypath.inputs.signor": [[745, "module-pypath.inputs.signor"]], "pypath.inputs.signor.signor_complexes": [[746, "pypath-inputs-signor-signor-complexes"]], "pypath.inputs.signor.signor_enzyme_substrate": [[747, "pypath-inputs-signor-signor-enzyme-substrate"]], "pypath.inputs.signor.signor_interactions": [[748, "pypath-inputs-signor-signor-interactions"]], "pypath.inputs.signor.signor_pathway_annotations": [[749, "pypath-inputs-signor-signor-pathway-annotations"]], "pypath.inputs.signor.signor_pathways": [[750, "pypath-inputs-signor-signor-pathways"]], "pypath.inputs.signor.signor_protein_families": [[751, "pypath-inputs-signor-signor-protein-families"]], "pypath.inputs.spike": [[752, "module-pypath.inputs.spike"]], "pypath.inputs.spike.spike_complexes": [[753, "pypath-inputs-spike-spike-complexes"]], "pypath.inputs.spike.spike_interactions": [[754, "pypath-inputs-spike-spike-interactions"]], "pypath.inputs.stitch": [[755, "module-pypath.inputs.stitch"]], "pypath.inputs.stitch.stitch_actions_interactions": [[756, "pypath-inputs-stitch-stitch-actions-interactions"]], "pypath.inputs.stitch.stitch_links_interactions": [[757, "pypath-inputs-stitch-stitch-links-interactions"]], "pypath.inputs.string": [[758, "module-pypath.inputs.string"]], "pypath.inputs.string.string_effects": [[759, "pypath-inputs-string-string-effects"]], "pypath.inputs.string.string_links_interactions": [[760, "pypath-inputs-string-string-links-interactions"]], "pypath.inputs.string.string_physical_interactions": [[761, "pypath-inputs-string-string-physical-interactions"]], "pypath.inputs.string.string_species": [[762, "pypath-inputs-string-string-species"]], "pypath.inputs.surfaceome": [[763, "module-pypath.inputs.surfaceome"]], "pypath.inputs.surfaceome.surfaceome_annotations": [[764, "pypath-inputs-surfaceome-surfaceome-annotations"]], "pypath.inputs.switches_elm": [[765, "module-pypath.inputs.switches_elm"]], "pypath.inputs.switches_elm.get_switches_elm": [[766, "pypath-inputs-switches-elm-get-switches-elm"]], "pypath.inputs.talklr": [[767, "module-pypath.inputs.talklr"]], "pypath.inputs.talklr.talklr_annotations": [[768, "pypath-inputs-talklr-talklr-annotations"]], "pypath.inputs.talklr.talklr_interactions": [[769, "pypath-inputs-talklr-talklr-interactions"]], "pypath.inputs.talklr.talklr_raw": [[770, "pypath-inputs-talklr-talklr-raw"]], "pypath.inputs.tcdb": [[771, "module-pypath.inputs.tcdb"]], "pypath.inputs.tcdb.tcdb_annotations": [[772, "pypath-inputs-tcdb-tcdb-annotations"]], "pypath.inputs.tcdb.tcdb_classes": [[773, "pypath-inputs-tcdb-tcdb-classes"]], "pypath.inputs.tcdb.tcdb_families": [[774, "pypath-inputs-tcdb-tcdb-families"]], "pypath.inputs.tfcensus": [[775, "module-pypath.inputs.tfcensus"]], "pypath.inputs.tfcensus.tfcensus_annotations": [[776, "pypath-inputs-tfcensus-tfcensus-annotations"]], "pypath.inputs.threedcomplex": [[777, "module-pypath.inputs.threedcomplex"]], "pypath.inputs.threedcomplex.threedcomplex_chains": [[778, "pypath-inputs-threedcomplex-threedcomplex-chains"]], "pypath.inputs.threedcomplex.threedcomplex_complexes": [[779, "pypath-inputs-threedcomplex-threedcomplex-complexes"]], "pypath.inputs.threedcomplex.threedcomplex_contacts": [[780, "pypath-inputs-threedcomplex-threedcomplex-contacts"]], "pypath.inputs.threedcomplex.threedcomplex_ddi": [[781, "pypath-inputs-threedcomplex-threedcomplex-ddi"]], "pypath.inputs.threedcomplex.threedcomplex_nresidues": [[782, "pypath-inputs-threedcomplex-threedcomplex-nresidues"]], "pypath.inputs.threedid": [[783, "module-pypath.inputs.threedid"]], "pypath.inputs.threedid.get_3did": [[784, "pypath-inputs-threedid-get-3did"]], "pypath.inputs.threedid.get_3did_ddi": [[785, "pypath-inputs-threedid-get-3did-ddi"]], "pypath.inputs.threedid.get_3did_dmi": [[786, "pypath-inputs-threedid-get-3did-dmi"]], "pypath.inputs.threedid.process_3did_dmi": [[787, "pypath-inputs-threedid-process-3did-dmi"]], "pypath.inputs.topdb": [[788, "module-pypath.inputs.topdb"]], "pypath.inputs.topdb.topdb_annotations": [[789, "pypath-inputs-topdb-topdb-annotations"]], "pypath.inputs.transmir": [[790, "module-pypath.inputs.transmir"]], "pypath.inputs.transmir.transmir_interactions": [[791, "pypath-inputs-transmir-transmir-interactions"]], "pypath.inputs.trip": [[792, "module-pypath.inputs.trip"]], "pypath.inputs.trip.take_a_trip": [[793, "pypath-inputs-trip-take-a-trip"]], "pypath.inputs.trip.trip_find_uniprot": [[794, "pypath-inputs-trip-trip-find-uniprot"]], "pypath.inputs.trip.trip_get_uniprot": [[795, "pypath-inputs-trip-trip-get-uniprot"]], "pypath.inputs.trip.trip_interactions": [[796, "pypath-inputs-trip-trip-interactions"]], "pypath.inputs.trip.trip_process": [[797, "pypath-inputs-trip-trip-process"]], "pypath.inputs.trip.trip_process_table": [[798, "pypath-inputs-trip-trip-process-table"]], "pypath.inputs.trrust": [[799, "module-pypath.inputs.trrust"]], "pypath.inputs.trrust.trrust_human": [[800, "pypath-inputs-trrust-trrust-human"]], "pypath.inputs.trrust.trrust_interactions": [[801, "pypath-inputs-trrust-trrust-interactions"]], "pypath.inputs.trrust.trrust_mouse": [[802, "pypath-inputs-trrust-trrust-mouse"]], "pypath.inputs.twosides": [[803, "module-pypath.inputs.twosides"]], "pypath.inputs.twosides.twosides_interactions": [[804, "pypath-inputs-twosides-twosides-interactions"]], "pypath.inputs.unichem": [[805, "module-pypath.inputs.unichem"]], "pypath.inputs.unichem.info": [[806, "pypath-inputs-unichem-info"]], "pypath.inputs.unichem.unichem_info": [[807, "pypath-inputs-unichem-unichem-info"]], "pypath.inputs.unichem.unichem_mapping": [[808, "pypath-inputs-unichem-unichem-mapping"]], "pypath.inputs.unichem.unichem_sources": [[809, "pypath-inputs-unichem-unichem-sources"]], "pypath.inputs.uniprot": [[810, "module-pypath.inputs.uniprot"]], "pypath.inputs.uniprot.Taxon": [[811, "pypath-inputs-uniprot-taxon"]], "pypath.inputs.uniprot.UniprotQuery": [[812, "pypath-inputs-uniprot-uniprotquery"]], "pypath.inputs.uniprot.UniprotRecordHistory": [[813, "pypath-inputs-uniprot-uniprotrecordhistory"]], "pypath.inputs.uniprot.deleted_uniprot_genesymbol": [[814, "pypath-inputs-uniprot-deleted-uniprot-genesymbol"]], "pypath.inputs.uniprot.get_uniprot_sec": [[815, "pypath-inputs-uniprot-get-uniprot-sec"]], "pypath.inputs.uniprot.idmapping_idtypes": [[816, "pypath-inputs-uniprot-idmapping-idtypes"]], "pypath.inputs.uniprot.protein_datasheet": [[817, "pypath-inputs-uniprot-protein-datasheet"]], "pypath.inputs.uniprot.query_builder": [[818, "pypath-inputs-uniprot-query-builder"]], "pypath.inputs.uniprot.swissprot_deleted": [[819, "pypath-inputs-uniprot-swissprot-deleted"]], "pypath.inputs.uniprot.trembl_deleted": [[820, "pypath-inputs-uniprot-trembl-deleted"]], "pypath.inputs.uniprot.uniprot_data": [[821, "pypath-inputs-uniprot-uniprot-data"]], "pypath.inputs.uniprot.uniprot_deleted": [[822, "pypath-inputs-uniprot-uniprot-deleted"]], "pypath.inputs.uniprot.uniprot_families": [[823, "pypath-inputs-uniprot-uniprot-families"]], "pypath.inputs.uniprot.uniprot_history": [[824, "pypath-inputs-uniprot-uniprot-history"]], "pypath.inputs.uniprot.uniprot_history_recent_datasheet": [[825, "pypath-inputs-uniprot-uniprot-history-recent-datasheet"]], "pypath.inputs.uniprot.uniprot_keywords": [[826, "pypath-inputs-uniprot-uniprot-keywords"]], "pypath.inputs.uniprot.uniprot_locations": [[827, "pypath-inputs-uniprot-uniprot-locations"]], "pypath.inputs.uniprot.uniprot_ncbi_taxids": [[828, "pypath-inputs-uniprot-uniprot-ncbi-taxids"]], "pypath.inputs.uniprot.uniprot_ncbi_taxids_2": [[829, "pypath-inputs-uniprot-uniprot-ncbi-taxids-2"]], "pypath.inputs.uniprot.uniprot_preprocess": [[830, "pypath-inputs-uniprot-uniprot-preprocess"]], "pypath.inputs.uniprot.uniprot_query": [[831, "pypath-inputs-uniprot-uniprot-query"]], "pypath.inputs.uniprot.uniprot_recent_version": [[832, "pypath-inputs-uniprot-uniprot-recent-version"]], "pypath.inputs.uniprot.uniprot_taxonomy": [[833, "pypath-inputs-uniprot-uniprot-taxonomy"]], "pypath.inputs.uniprot.uniprot_tissues": [[834, "pypath-inputs-uniprot-uniprot-tissues"]], "pypath.inputs.uniprot.uniprot_topology": [[835, "pypath-inputs-uniprot-uniprot-topology"]], "pypath.inputs.uniprot.valid_uniprot": [[836, "pypath-inputs-uniprot-valid-uniprot"]], "pypath.inputs.uniprot_db": [[837, "module-pypath.inputs.uniprot_db"]], "pypath.inputs.uniprot_db.all_swissprots": [[838, "pypath-inputs-uniprot-db-all-swissprots"]], "pypath.inputs.uniprot_db.all_trembls": [[839, "pypath-inputs-uniprot-db-all-trembls"]], "pypath.inputs.uniprot_db.all_uniprots": [[840, "pypath-inputs-uniprot-db-all-uniprots"]], "pypath.inputs.uniprot_db.get_db": [[841, "pypath-inputs-uniprot-db-get-db"]], "pypath.inputs.uniprot_db.init_db": [[842, "pypath-inputs-uniprot-db-init-db"]], "pypath.inputs.uniprot_db.is_swissprot": [[843, "pypath-inputs-uniprot-db-is-swissprot"]], "pypath.inputs.uniprot_db.is_trembl": [[844, "pypath-inputs-uniprot-db-is-trembl"]], "pypath.inputs.uniprot_db.is_uniprot": [[845, "pypath-inputs-uniprot-db-is-uniprot"]], "pypath.inputs.wang": [[846, "module-pypath.inputs.wang"]], "pypath.inputs.wang.cui_interactions": [[847, "pypath-inputs-wang-cui-interactions"]], "pypath.inputs.wang.hsn_interactions": [[848, "pypath-inputs-wang-hsn-interactions"]], "pypath.inputs.wang.wang_annotations": [[849, "pypath-inputs-wang-wang-annotations"]], "pypath.inputs.wang.wang_interactions": [[850, "pypath-inputs-wang-wang-interactions"]], "pypath.inputs.wojtowicz2020": [[851, "module-pypath.inputs.wojtowicz2020"]], "pypath.inputs.wojtowicz2020.wojtowicz2020_interactions": [[852, "pypath-inputs-wojtowicz2020-wojtowicz2020-interactions"]], "pypath.inputs.wojtowicz2020.wojtowicz2020_raw": [[853, "pypath-inputs-wojtowicz2020-wojtowicz2020-raw"]], "pypath.inputs.zhong2015": [[854, "module-pypath.inputs.zhong2015"]], "pypath.inputs.zhong2015.zhong2015_annotations": [[855, "pypath-inputs-zhong2015-zhong2015-annotations"]], "pypath.internals": [[856, "module-pypath.internals"]], "pypath.internals.annot_formats": [[857, "module-pypath.internals.annot_formats"]], "pypath.internals.annot_formats.AnnotDef": [[858, "pypath-internals-annot-formats-annotdef"]], "pypath.internals.annot_formats.AnnotDefKey": [[859, "pypath-internals-annot-formats-annotdefkey"]], "pypath.internals.annot_formats.AnnotOp": [[860, "pypath-internals-annot-formats-annotop"]], "pypath.internals.annot_formats.AnnotationGroup": [[861, "pypath-internals-annot-formats-annotationgroup"]], "pypath.internals.input_formats": [[862, "module-pypath.internals.input_formats"]], "pypath.internals.input_formats.ArrayMapping": [[863, "pypath-internals-input-formats-arraymapping"]], "pypath.internals.input_formats.BiomartMapping": [[864, "pypath-internals-input-formats-biomartmapping"]], "pypath.internals.input_formats.FileMapping": [[865, "pypath-internals-input-formats-filemapping"]], "pypath.internals.input_formats.HmdbMapping": [[866, "pypath-internals-input-formats-hmdbmapping"]], "pypath.internals.input_formats.MappingInput": [[867, "pypath-internals-input-formats-mappinginput"]], "pypath.internals.input_formats.NetworkInput": [[868, "pypath-internals-input-formats-networkinput"]], "pypath.internals.input_formats.PickleMapping": [[869, "pypath-internals-input-formats-picklemapping"]], "pypath.internals.input_formats.ProMapping": [[870, "pypath-internals-input-formats-promapping"]], "pypath.internals.input_formats.RampMapping": [[871, "pypath-internals-input-formats-rampmapping"]], "pypath.internals.input_formats.ReadList": [[872, "pypath-internals-input-formats-readlist"]], "pypath.internals.input_formats.UnichemMapping": [[873, "pypath-internals-input-formats-unichemmapping"]], "pypath.internals.input_formats.UniprotListMapping": [[874, "pypath-internals-input-formats-uniprotlistmapping"]], "pypath.internals.input_formats.UniprotMapping": [[875, "pypath-internals-input-formats-uniprotmapping"]], "pypath.internals.intera": [[876, "module-pypath.internals.intera"]], "pypath.internals.intera.Complex": [[877, "pypath-internals-intera-complex"]], "pypath.internals.intera.Domain": [[878, "pypath-internals-intera-domain"]], "pypath.internals.intera.DomainDomain": [[879, "pypath-internals-intera-domaindomain"]], "pypath.internals.intera.DomainMotif": [[880, "pypath-internals-intera-domainmotif"]], "pypath.internals.intera.Interface": [[881, "pypath-internals-intera-interface"]], "pypath.internals.intera.Motif": [[882, "pypath-internals-intera-motif"]], "pypath.internals.intera.Ptm": [[883, "pypath-internals-intera-ptm"]], "pypath.internals.intera.Regulation": [[884, "pypath-internals-intera-regulation"]], "pypath.internals.intera.Residue": [[885, "pypath-internals-intera-residue"]], "pypath.internals.license": [[886, "module-pypath.internals.license"]], "pypath.internals.license.License": [[887, "pypath-internals-license-license"]], "pypath.internals.license.LicenseAttrib": [[888, "pypath-internals-license-licenseattrib"]], "pypath.internals.license.LicenseFeature": [[889, "pypath-internals-license-licensefeature"]], "pypath.internals.license.LicensePurpose": [[890, "pypath-internals-license-licensepurpose"]], "pypath.internals.license.LicenseSharing": [[891, "pypath-internals-license-licensesharing"]], "pypath.internals.maps": [[892, "module-pypath.internals.maps"]], "pypath.internals.refs": [[893, "module-pypath.internals.refs"]], "pypath.internals.refs.Reference": [[894, "pypath-internals-refs-reference"]], "pypath.internals.refs.get_pubmed_data": [[895, "pypath-internals-refs-get-pubmed-data"]], "pypath.internals.resource": [[896, "module-pypath.internals.resource"]], "pypath.internals.resource.AbstractResource": [[897, "pypath-internals-resource-abstractresource"]], "pypath.internals.resource.EnzymeSubstrateResource": [[898, "pypath-internals-resource-enzymesubstrateresource"]], "pypath.internals.resource.EnzymeSubstrateResourceKey": [[899, "pypath-internals-resource-enzymesubstrateresourcekey"]], "pypath.internals.resource.NetworkDataset": [[900, "pypath-internals-resource-networkdataset"]], "pypath.internals.resource.NetworkResource": [[901, "pypath-internals-resource-networkresource"]], "pypath.internals.resource.NetworkResourceKey": [[902, "pypath-internals-resource-networkresourcekey"]], "pypath.internals.resource.ResourceAttributes": [[903, "pypath-internals-resource-resourceattributes"]], "pypath.legacy": [[904, "module-pypath.legacy"]], "pypath.legacy.db_categories": [[905, "module-pypath.legacy.db_categories"]], "pypath.legacy.db_categories.get_categories": [[906, "pypath-legacy-db-categories-get-categories"]], "pypath.legacy.db_categories.get_category": [[907, "pypath-legacy-db-categories-get-category"]], "pypath.log": [[908, "pypath-log"]], "pypath.resources": [[909, "module-pypath.resources"]], "pypath.resources.controller": [[910, "module-pypath.resources.controller"]], "pypath.resources.controller.ResourceController": [[911, "pypath-resources-controller-resourcecontroller"]], "pypath.resources.data": [[912, "module-pypath.resources.data"]], "pypath.resources.data_formats": [[913, "module-pypath.resources.data_formats"]], "pypath.resources.data_formats.activity_flow": [[914, "pypath-resources-data-formats-activity-flow"]], "pypath.resources.data_formats.enzyme_substrate": [[915, "pypath-resources-data-formats-enzyme-substrate"]], "pypath.resources.data_formats.interaction": [[916, "pypath-resources-data-formats-interaction"]], "pypath.resources.data_formats.interaction_htp": [[917, "pypath-resources-data-formats-interaction-htp"]], "pypath.resources.data_formats.pathway_bad": [[918, "pypath-resources-data-formats-pathway-bad"]], "pypath.resources.data_formats.reaction_pc": [[919, "pypath-resources-data-formats-reaction-pc"]], "pypath.resources.data_formats.transcription_deprecated": [[920, "pypath-resources-data-formats-transcription-deprecated"]], "pypath.resources.data_formats.transcription_onebyone": [[921, "pypath-resources-data-formats-transcription-onebyone"]], "pypath.resources.get_controller": [[922, "pypath-resources-get-controller"]], "pypath.resources.licenses": [[923, "module-pypath.resources.licenses"]], "pypath.resources.licenses.Licenses": [[924, "pypath-resources-licenses-licenses"]], "pypath.resources.network": [[925, "module-pypath.resources.network"]], "pypath.resources.network.choose_dataset": [[926, "pypath-resources-network-choose-dataset"]], "pypath.resources.network.dataset_priority": [[927, "pypath-resources-network-dataset-priority"]], "pypath.resources.network.dorothea_expand_levels": [[928, "pypath-resources-network-dorothea-expand-levels"]], "pypath.resources.urls": [[929, "module-pypath.resources.urls"]], "pypath.share": [[930, "module-pypath.share"]], "pypath.share.cache": [[931, "module-pypath.share.cache"]], "pypath.share.cache.cache_item": [[932, "pypath-share-cache-cache-item"]], "pypath.share.cache.cache_path": [[933, "pypath-share-cache-cache-path"]], "pypath.share.cache.default_cachedir": [[934, "pypath-share-cache-default-cachedir"]], "pypath.share.cache.get_cachedir": [[935, "pypath-share-cache-get-cachedir"]], "pypath.share.common": [[936, "module-pypath.share.common"]], "pypath.share.constants": [[937, "module-pypath.share.constants"]], "pypath.share.curl": [[938, "module-pypath.share.curl"]], "pypath.share.curl.Curl": [[939, "pypath-share-curl-curl"]], "pypath.share.curl.FileOpener": [[940, "pypath-share-curl-fileopener"]], "pypath.share.curl.RemoteFile": [[941, "pypath-share-curl-remotefile"]], "pypath.share.curl.cache_delete_off": [[942, "pypath-share-curl-cache-delete-off"]], "pypath.share.curl.cache_delete_on": [[943, "pypath-share-curl-cache-delete-on"]], "pypath.share.curl.cache_off": [[944, "pypath-share-curl-cache-off"]], "pypath.share.curl.cache_on": [[945, "pypath-share-curl-cache-on"]], "pypath.share.curl.cache_print_off": [[946, "pypath-share-curl-cache-print-off"]], "pypath.share.curl.cache_print_on": [[947, "pypath-share-curl-cache-print-on"]], "pypath.share.curl.debug_off": [[948, "pypath-share-curl-debug-off"]], "pypath.share.curl.debug_on": [[949, "pypath-share-curl-debug-on"]], "pypath.share.curl.dryrun_off": [[950, "pypath-share-curl-dryrun-off"]], "pypath.share.curl.dryrun_on": [[951, "pypath-share-curl-dryrun-on"]], "pypath.share.curl.is_url": [[952, "pypath-share-curl-is-url"]], "pypath.share.curl.preserve_off": [[953, "pypath-share-curl-preserve-off"]], "pypath.share.curl.preserve_on": [[954, "pypath-share-curl-preserve-on"]], "pypath.share.progress": [[955, "module-pypath.share.progress"]], "pypath.share.progress.Progress": [[956, "pypath-share-progress-progress"]], "pypath.share.session": [[957, "module-pypath.share.session"]], "pypath.share.settings": [[958, "module-pypath.share.settings"]], "pypath.utils": [[959, "module-pypath.utils"]], "pypath.utils.go": [[960, "module-pypath.utils.go"]], "pypath.utils.go.GOAnnotation": [[961, "pypath-utils-go-goannotation"]], "pypath.utils.go.GOCustomAnnotation": [[962, "pypath-utils-go-gocustomannotation"]], "pypath.utils.go.GeneOntology": [[963, "pypath-utils-go-geneontology"]], "pypath.utils.go.annotate": [[964, "pypath-utils-go-annotate"]], "pypath.utils.go.get_db": [[965, "pypath-utils-go-get-db"]], "pypath.utils.go.init_db": [[966, "pypath-utils-go-init-db"]], "pypath.utils.go.load_go": [[967, "pypath-utils-go-load-go"]], "pypath.utils.mapping": [[968, "module-pypath.utils.mapping"]], "pypath.utils.mapping.MapReader": [[969, "pypath-utils-mapping-mapreader"]], "pypath.utils.mapping.Mapper": [[970, "pypath-utils-mapping-mapper"]], "pypath.utils.mapping.MappingTable": [[971, "pypath-utils-mapping-mappingtable"]], "pypath.utils.mapping.MappingTableKey": [[972, "pypath-utils-mapping-mappingtablekey"]], "pypath.utils.mapping.UNIPROT_ID_TYPES": [[973, "pypath-utils-mapping-uniprot-id-types"]], "pypath.utils.mapping.get_mapper": [[974, "pypath-utils-mapping-get-mapper"]], "pypath.utils.mapping.guess_type": [[975, "pypath-utils-mapping-guess-type"]], "pypath.utils.mapping.id_from_label": [[976, "pypath-utils-mapping-id-from-label"]], "pypath.utils.mapping.id_from_label0": [[977, "pypath-utils-mapping-id-from-label0"]], "pypath.utils.mapping.id_types": [[978, "pypath-utils-mapping-id-types"]], "pypath.utils.mapping.init": [[979, "pypath-utils-mapping-init"]], "pypath.utils.mapping.label": [[980, "pypath-utils-mapping-label"]], "pypath.utils.mapping.map_name": [[981, "pypath-utils-mapping-map-name"]], "pypath.utils.mapping.map_name0": [[982, "pypath-utils-mapping-map-name0"]], "pypath.utils.mapping.map_names": [[983, "pypath-utils-mapping-map-names"]], "pypath.utils.mapping.mapping_tables": [[984, "pypath-utils-mapping-mapping-tables"]], "pypath.utils.mapping.translation_df": [[985, "pypath-utils-mapping-translation-df"]], "pypath.utils.mapping.translation_dict": [[986, "pypath-utils-mapping-translation-dict"]], "pypath.utils.metabo": [[987, "module-pypath.utils.metabo"]], "pypath.utils.orthology": [[988, "module-pypath.utils.orthology"]], "pypath.utils.orthology.EnsemblOrtholog": [[989, "pypath-utils-orthology-ensemblortholog"]], "pypath.utils.orthology.EnsemblOrthology": [[990, "pypath-utils-orthology-ensemblorthology"]], "pypath.utils.orthology.HomologeneOrtholog": [[991, "pypath-utils-orthology-homologeneortholog"]], "pypath.utils.orthology.HomologeneOrthology": [[992, "pypath-utils-orthology-homologeneorthology"]], "pypath.utils.orthology.OmaOrtholog": [[993, "pypath-utils-orthology-omaortholog"]], "pypath.utils.orthology.OmaOrthology": [[994, "pypath-utils-orthology-omaorthology"]], "pypath.utils.orthology.OrthologBase": [[995, "pypath-utils-orthology-orthologbase"]], "pypath.utils.orthology.OrthologMeta": [[996, "pypath-utils-orthology-orthologmeta"]], "pypath.utils.orthology.OrthologyManager": [[997, "pypath-utils-orthology-orthologymanager"]], "pypath.utils.orthology.OrthologyTableKey": [[998, "pypath-utils-orthology-orthologytablekey"]], "pypath.utils.orthology.ProteinOrthology": [[999, "pypath-utils-orthology-proteinorthology"]], "pypath.utils.orthology.Proteomes": [[1000, "pypath-utils-orthology-proteomes"]], "pypath.utils.orthology.PtmOrthology": [[1001, "pypath-utils-orthology-ptmorthology"]], "pypath.utils.orthology.SequenceContainer": [[1002, "pypath-utils-orthology-sequencecontainer"]], "pypath.utils.orthology.get_df": [[1003, "pypath-utils-orthology-get-df"]], "pypath.utils.orthology.get_dict": [[1004, "pypath-utils-orthology-get-dict"]], "pypath.utils.orthology.get_manager": [[1005, "pypath-utils-orthology-get-manager"]], "pypath.utils.orthology.init": [[1006, "pypath-utils-orthology-init"]], "pypath.utils.orthology.translate": [[1007, "pypath-utils-orthology-translate"]], "pypath.utils.orthology.translate_df": [[1008, "pypath-utils-orthology-translate-df"]], "pypath.utils.pdb": [[1009, "module-pypath.utils.pdb"]], "pypath.utils.pdb.Residue": [[1010, "pypath-utils-pdb-residue"]], "pypath.utils.pdb.ResidueMapper": [[1011, "pypath-utils-pdb-residuemapper"]], "pypath.utils.pdb.Segment": [[1012, "pypath-utils-pdb-segment"]], "pypath.utils.pdb.residue_pdb": [[1013, "pypath-utils-pdb-residue-pdb"]], "pypath.utils.proteomicsdb": [[1014, "module-pypath.utils.proteomicsdb"]], "pypath.utils.proteomicsdb.ProteomicsDB": [[1015, "pypath-utils-proteomicsdb-proteomicsdb"]], "pypath.utils.pyreact": [[1016, "module-pypath.utils.pyreact"]], "pypath.utils.pyreact.AttributeHandler": [[1017, "pypath-utils-pyreact-attributehandler"]], "pypath.utils.pyreact.BioPaxReader": [[1018, "pypath-utils-pyreact-biopaxreader"]], "pypath.utils.pyreact.Complex": [[1019, "pypath-utils-pyreact-complex"]], "pypath.utils.pyreact.ComplexVariations": [[1020, "pypath-utils-pyreact-complexvariations"]], "pypath.utils.pyreact.Control": [[1021, "pypath-utils-pyreact-control"]], "pypath.utils.pyreact.Entity": [[1022, "pypath-utils-pyreact-entity"]], "pypath.utils.pyreact.EntitySet": [[1023, "pypath-utils-pyreact-entityset"]], "pypath.utils.pyreact.Intersecting": [[1024, "pypath-utils-pyreact-intersecting"]], "pypath.utils.pyreact.Protein": [[1025, "pypath-utils-pyreact-protein"]], "pypath.utils.pyreact.ProteinFamily": [[1026, "pypath-utils-pyreact-proteinfamily"]], "pypath.utils.pyreact.PyReact": [[1027, "pypath-utils-pyreact-pyreact"]], "pypath.utils.pyreact.Reaction": [[1028, "pypath-utils-pyreact-reaction"]], "pypath.utils.pyreact.ReactionSide": [[1029, "pypath-utils-pyreact-reactionside"]], "pypath.utils.pyreact.Reference": [[1030, "pypath-utils-pyreact-reference"]], "pypath.utils.reflists": [[1031, "module-pypath.utils.reflists"]], "pypath.utils.reflists.ReferenceListManager": [[1032, "pypath-utils-reflists-referencelistmanager"]], "pypath.utils.reflists.check": [[1033, "pypath-utils-reflists-check"]], "pypath.utils.reflists.get_manager": [[1034, "pypath-utils-reflists-get-manager"]], "pypath.utils.reflists.get_reflist": [[1035, "pypath-utils-reflists-get-reflist"]], "pypath.utils.reflists.init": [[1036, "pypath-utils-reflists-init"]], "pypath.utils.reflists.is_not": [[1037, "pypath-utils-reflists-is-not"]], "pypath.utils.reflists.select": [[1038, "pypath-utils-reflists-select"]], "pypath.utils.residues": [[1039, "module-pypath.utils.residues"]], "pypath.utils.residues.ResidueMapper": [[1040, "pypath-utils-residues-residuemapper"]], "pypath.utils.seq": [[1041, "module-pypath.utils.seq"]], "pypath.utils.seq.Pfam": [[1042, "pypath-utils-seq-pfam"]], "pypath.utils.seq.Resource": [[1043, "pypath-utils-seq-resource"]], "pypath.utils.seq.Seq": [[1044, "pypath-utils-seq-seq"]], "pypath.utils.seq.get_isoforms": [[1045, "pypath-utils-seq-get-isoforms"]], "pypath.utils.seq.read_fasta": [[1046, "pypath-utils-seq-read-fasta"]], "pypath.utils.seq.swissprot_seq": [[1047, "pypath-utils-seq-swissprot-seq"]], "pypath.utils.taxonomy": [[1048, "module-pypath.utils.taxonomy"]], "pypath.utils.taxonomy.ensure_common_name": [[1049, "pypath-utils-taxonomy-ensure-common-name"]], "pypath.utils.taxonomy.ensure_ensembl_name": [[1050, "pypath-utils-taxonomy-ensure-ensembl-name"]], "pypath.utils.taxonomy.ensure_latin_name": [[1051, "pypath-utils-taxonomy-ensure-latin-name"]], "pypath.utils.taxonomy.ensure_ncbi_tax_id": [[1052, "pypath-utils-taxonomy-ensure-ncbi-tax-id"]], "pypath.utils.taxonomy.get_db": [[1053, "pypath-utils-taxonomy-get-db"]], "pypath.utils.taxonomy.init_db": [[1054, "pypath-utils-taxonomy-init-db"]], "pypath.utils.taxonomy.short_latin_names": [[1055, "pypath-utils-taxonomy-short-latin-names"]], "pypath.utils.taxonomy.shorten_latin_name": [[1056, "pypath-utils-taxonomy-shorten-latin-name"]], "pypath.utils.taxonomy.taxid_from_common_name": [[1057, "pypath-utils-taxonomy-taxid-from-common-name"]], "pypath.utils.taxonomy.taxid_from_dbptm_taxon_name": [[1058, "pypath-utils-taxonomy-taxid-from-dbptm-taxon-name"]], "pypath.utils.taxonomy.taxid_from_ensembl_name": [[1059, "pypath-utils-taxonomy-taxid-from-ensembl-name"]], "pypath.utils.taxonomy.taxid_from_latin_name": [[1060, "pypath-utils-taxonomy-taxid-from-latin-name"]], "pypath.utils.taxonomy.taxid_from_nonstandard": [[1061, "pypath-utils-taxonomy-taxid-from-nonstandard"]], "pypath.utils.taxonomy.uniprot_taxid": [[1062, "pypath-utils-taxonomy-uniprot-taxid"]], "pypath.utils.unichem": [[1063, "module-pypath.utils.unichem"]], "pypath.utils.unichem.Unichem": [[1064, "pypath-utils-unichem-unichem"]], "pypath.visual": [[1065, "module-pypath.visual"]], "pypath.visual.drawing": [[1066, "module-pypath.visual.drawing"]], "pypath.visual.drawing.InterSet": [[1067, "pypath-visual-drawing-interset"]], "pypath.visual.drawing.Plot": [[1068, "pypath-visual-drawing-plot"]], "pypath.visual.igraph_drawing": [[1069, "module-pypath.visual.igraph_drawing"]], "pypath.visual.igraph_drawing.AbstractCairoGraphDrawer": [[1070, "pypath-visual-igraph-drawing-abstractcairographdrawer"]], "pypath.visual.igraph_drawing.ArrowEdgeDrawer": [[1071, "pypath-visual-igraph-drawing-arrowedgedrawer"]], "pypath.visual.igraph_drawing.DefaultGraphDrawerFFsupport": [[1072, "pypath-visual-igraph-drawing-defaultgraphdrawerffsupport"]], "pypath.visual.igraph_drawing.DefaultVertexDrawer": [[1073, "pypath-visual-igraph-drawing-defaultvertexdrawer"]], "pypath.visual.igraph_drawing.TextDrawer": [[1074, "pypath-visual-igraph-drawing-textdrawer"]], "pypath.visual.igraph_drawing.edge": [[1075, "module-pypath.visual.igraph_drawing.edge"]], "pypath.visual.igraph_drawing.edge.AbstractEdgeDrawer": [[1076, "pypath-visual-igraph-drawing-edge-abstractedgedrawer"]], "pypath.visual.igraph_drawing.edge.AlphaVaryingEdgeDrawer": [[1077, "pypath-visual-igraph-drawing-edge-alphavaryingedgedrawer"]], "pypath.visual.igraph_drawing.edge.ArrowEdgeDrawer": [[1078, "pypath-visual-igraph-drawing-edge-arrowedgedrawer"]], "pypath.visual.igraph_drawing.edge.DarkToLightEdgeDrawer": [[1079, "pypath-visual-igraph-drawing-edge-darktolightedgedrawer"]], "pypath.visual.igraph_drawing.edge.LightToDarkEdgeDrawer": [[1080, "pypath-visual-igraph-drawing-edge-lighttodarkedgedrawer"]], "pypath.visual.igraph_drawing.edge.TaperedEdgeDrawer": [[1081, "pypath-visual-igraph-drawing-edge-taperededgedrawer"]], "pypath.visual.igraph_drawing.vertex": [[1082, "module-pypath.visual.igraph_drawing.vertex"]], "pypath.visual.igraph_drawing.vertex.AbstractCairoDrawer": [[1083, "pypath-visual-igraph-drawing-vertex-abstractcairodrawer"]], "pypath.visual.igraph_drawing.vertex.AbstractCairoVertexDrawer": [[1084, "pypath-visual-igraph-drawing-vertex-abstractcairovertexdrawer"]], "pypath.visual.igraph_drawing.vertex.AbstractDrawer": [[1085, "pypath-visual-igraph-drawing-vertex-abstractdrawer"]], "pypath.visual.igraph_drawing.vertex.AbstractVertexDrawer": [[1086, "pypath-visual-igraph-drawing-vertex-abstractvertexdrawer"]], "pypath.visual.igraph_drawing.vertex.DefaultVertexDrawer": [[1087, "pypath-visual-igraph-drawing-vertex-defaultvertexdrawer"]], "Contents": [[1088, "contents"]], "Welcome to pypath!": [[1089, "welcome-to-pypath"]], "OmniPath": [[1089, "omnipath"]], "Do you need pypath?": [[1089, "do-you-need-pypath"]], "Installation": [[1089, "installation"]], "Docs": [[1089, "docs"]], "Get help": [[1089, "get-help"]], "Features": [[1089, "features"]], "Integrated databases": [[1089, "integrated-databases"]], "Database management": [[1089, "database-management"]], "Further modules in pypath": [[1089, "further-modules-in-pypath"]], "ID conversion": [[1089, "id-conversion"]], "Homology translation": [[1089, "homology-translation"]], "FAQ": [[1089, "faq"]], "Contact": [[1089, "contact"]], "Impressum": [[1089, "impressum"]], "History and releases": [[1089, "history-and-releases"]], "The pypath book": [[1090, "The-pypath-book"]], "Introduction": [[1090, "Introduction"]], "Build, load and save databases": [[1090, "Build,-load-and-save-databases"]], "The OmniPath app": [[1090, "The-OmniPath-app"]], "Built-in database definitions": [[1090, "Built-in-database-definitions"]], "Networks": [[1090, "Networks"]], "Strictly literature curated network": [[1090, "Strictly-literature-curated-network"]], "The OmniPath network with extra activity flow, enzyme-substrate and ligand-receptor interactions": [[1090, "The-OmniPath-network-with-extra-activity-flow,-enzyme-substrate-and-ligand-receptor-interactions"]], "Transcriptional regulation network from DoRothEA and other resources": [[1090, "Transcriptional-regulation-network-from-DoRothEA-and-other-resources"]], "Literature curated miRNA post-transcriptional regulation network": [[1090, "Literature-curated-miRNA-post-transcriptional-regulation-network"]], "Transcriptional regulation of miRNA": [[1090, "Transcriptional-regulation-of-miRNA"]], "lncRNA-mRNA interactions": [[1090, "lncRNA-mRNA-interactions"]], "Small molecule-protein interactions": [[1090, "Small-molecule-protein-interactions"]], "Enzyme-substrate relationships": [[1090, "Enzyme-substrate-relationships"]], "Protein complexes": [[1090, "Protein-complexes"], [1090, "id2"]], "Annotations": [[1090, "Annotations"], [1090, "id1"], [1093, "annotations"]], "Inter-cellular communication roles": [[1090, "Inter-cellular-communication-roles"]], "Data directly from the original resources": [[1090, "Data-directly-from-the-original-resources"]], "Interesting resources": [[1090, "Interesting-resources"]], "RaMP": [[1090, "RaMP"]], "TL;DR": [[1090, "TL;DR"]], "HMDB (Human Metabolome Database)": [[1090, "HMDB-(Human-Metabolome-Database)"]], "Direct access to HMDB data": [[1090, "Direct-access-to-HMDB-data"]], "Higher level access to HMDB data": [[1090, "Higher-level-access-to-HMDB-data"]], "ID translation with HMDB": [[1090, "ID-translation-with-HMDB"]], "NCBI E-Utils": [[1090, "NCBI-E-Utils"]], "Download management": [[1090, "Download-management"]], "Cache management and customization": [[1090, "Cache-management-and-customization"]], "Download failures": [[1090, "Download-failures"]], "Corrupted cache content": [[1090, "Corrupted-cache-content"]], "Network communication issues: look into the curl debug log": [[1090, "Network-communication-issues:-look-into-the-curl-debug-log"]], "Timeouts": [[1090, "Timeouts"]], "Access and inspect the Curl object": [[1090, "Access-and-inspect-the-Curl-object"]], "Is it failing only for you?": [[1090, "Is-it-failing-only-for-you?"]], "Read the log": [[1090, "Read-the-log"]], "TLS (SSL, HTTPS) errors": [[1090, "TLS-(SSL,-HTTPS)-errors"]], "Resources": [[1090, "Resources"]], "Licenses": [[1090, "Licenses"]], "Example: build a network for commercial use": [[1090, "Example:-build-a-network-for-commercial-use"]], "Resource information": [[1090, "Resource-information"]], "Resource definitions for a certain database or dataset": [[1090, "Resource-definitions-for-a-certain-database-or-dataset"]], "Building networks": [[1090, "Building-networks"]], "Which network datasets are pre-defined in pypath?": [[1090, "Which-network-datasets-are-pre-defined-in-pypath?"]], "The Network object": [[1090, "The-Network-object"]], "Network in pandas.DataFrame": [[1090, "Network-in-pandas.DataFrame"]], "Self interactions (loop edges) in the network": [[1090, "Self-interactions-(loop-edges)-in-the-network"]], "Molecular complexes in the network": [[1090, "Molecular-complexes-in-the-network"]], "Translating identifiers": [[1090, "Translating-identifiers"]], "Pre-defined ID translation tables": [[1090, "Pre-defined-ID-translation-tables"]], "Direct access to ID translation tables": [[1090, "Direct-access-to-ID-translation-tables"]], "Orthology translation": [[1090, "Orthology-translation"]], "Orthology translation tables as dictionaries": [[1090, "Orthology-translation-tables-as-dictionaries"]], "Orthology translation data frames": [[1090, "Orthology-translation-data-frames"]], "Taxonomy": [[1090, "Taxonomy"]], "Translating to NCBI Taxonomy, scientific names and common names": [[1090, "Translating-to-NCBI-Taxonomy,-scientific-names-and-common-names"]], "Organism from UniProt ID": [[1090, "Organism-from-UniProt-ID"]], "UniProt": [[1090, "UniProt"]], "The UniProt input module": [[1090, "The-UniProt-input-module"]], "All UniProt IDs for one organism": [[1090, "All-UniProt-IDs-for-one-organism"]], "UniProt ID format validation": [[1090, "UniProt-ID-format-validation"]], "UniProt ID validation": [[1090, "UniProt-ID-validation"]], "Single UniProt protein datasheet": [[1090, "Single-UniProt-protein-datasheet"]], "History of UniProt records": [[1090, "History-of-UniProt-records"]], "UniProt REST API": [[1090, "UniProt-REST-API"]], "Processed UniProt annotations": [[1090, "Processed-UniProt-annotations"]], "The UniProt utils module": [[1090, "The-UniProt-utils-module"]], "Datasheets": [[1090, "Datasheets"]], "Tables": [[1090, "Tables"]], "Sanitizing UniProt IDs": [[1090, "Sanitizing-UniProt-IDs"]], "Enzyme-substrate interactions": [[1090, "Enzyme-substrate-interactions"], [1093, "enzyme-substrate-interactions"]], "Enzyme-substrate objects": [[1090, "Enzyme-substrate-objects"]], "Enzyme-substrate data frame": [[1090, "Enzyme-substrate-data-frame"]], "Protein sequences": [[1090, "Protein-sequences"]], "Load a single annotation resource": [[1090, "Load-a-single-annotation-resource"]], "Load the full annotations database by the database manager": [[1090, "Load-the-full-annotations-database-by-the-database-manager"]], "Load only selected annotations": [[1090, "Load-only-selected-annotations"]], "Data frames of annotations": [[1090, "Data-frames-of-annotations"]], "Inter-cellular signaling roles": [[1090, "Inter-cellular-signaling-roles"]], "Build an intercellular communication network": [[1090, "Build-an-intercellular-communication-network"]], "Quantitative overview of intercell annotations": [[1090, "Quantitative-overview-of-intercell-annotations"]], "Intercell database as data frame": [[1090, "Intercell-database-as-data-frame"]], "Browse intercell categories": [[1090, "Browse-intercell-categories"]], "Gene Ontology": [[1090, "Gene-Ontology"]], "Protein complex objects": [[1090, "Protein-complex-objects"]], "Protein complex data frame": [[1090, "Protein-complex-data-frame"]], "Saving datasets as pickles": [[1090, "Saving-datasets-as-pickles"]], "Log messages and sessions": [[1090, "Log-messages-and-sessions"]], "Basic info about the session": [[1090, "Basic-info-about-the-session"]], "Read the log file": [[1090, "Read-the-log-file"]], "Logging to the console": [[1090, "Logging-to-the-console"]], "Disable logging": [[1090, "Disable-logging"]], "Write to the log": [[1090, "Write-to-the-log"]], "Sending a single message": [[1090, "Sending-a-single-message"]], "Connect a module or class to the pypath logger": [[1090, "Connect-a-module-or-class-to-the-pypath-logger"]], "BEL export": [[1090, "BEL-export"]], "CellPhoneDB export": [[1090, "CellPhoneDB-export"]], "The legacy igraph-based network object": [[1090, "The-legacy-igraph-based-network-object"]], "I just want a network quickly and play around with pypath": [[1090, "I-just-want-a-network-quickly-and-play-around-with-pypath"]], "How do I build networks from any data with pypath?": [[1090, "How-do-I-build-networks-from-any-data-with-pypath?"]], "Defining input formats": [[1090, "Defining-input-formats"]], "Creating PyPath object and loading the 2 test files": [[1090, "Creating-PyPath-object-and-loading-the-2-test-files"]], "Structure of the legacy network object": [[1090, "Structure-of-the-legacy-network-object"]], "Directions and signs": [[1090, "Directions-and-signs"]], "Accessing nodes in the network": [[1090, "Accessing-nodes-in-the-network"]], "Querying relationships with our without causality": [[1090, "Querying-relationships-with-our-without-causality"]], "Accessing edges by identifiers": [[1090, "Accessing-edges-by-identifiers"]], "Literature references": [[1090, "Literature-references"]], "Plotting the network with igraph": [[1090, "Plotting-the-network-with-igraph"]], "Reference": [[1091, "reference"]], "How to navigate the reference?": [[1091, "how-to-navigate-the-reference"]], "Release history": [[1092, "release-history"]], "0.1.0": [[1092, "id1"]], "0.2.0": [[1092, "id2"]], "0.3.0": [[1092, "id3"]], "0.4.0": [[1092, "id4"]], "0.5.0": [[1092, "id5"]], "0.5.32": [[1092, "id6"]], "0.6.31": [[1092, "id7"]], "0.7.0": [[1092, "id8"]], "0.7.74": [[1092, "id9"]], "0.7.93": [[1092, "id10"]], "0.7.110": [[1092, "id11"]], "0.8": [[1092, "id12"]], "0.9": [[1092, "id13"]], "0.10.0": [[1092, "id14"]], "0.11.0": [[1092, "id15"]], "0.12.0": [[1092, "id16"]], "0.13.0": [[1092, "id17"]], "0.14.0": [[1092, "id18"]], "Upcoming": [[1092, "upcoming"]], "Webservice": [[1093, "webservice"]], "Query types": [[1093, "query-types"]], "Interaction datasets": [[1093, "interaction-datasets"]], "Mouse and rat": [[1093, "mouse-and-rat"]], "Examples": [[1093, "examples"]], "Molecular interaction network": [[1093, "molecular-interaction-network"]], "Molecular complexes": [[1093, "molecular-complexes"]], "Roles in inter-cellular communication": [[1093, "roles-in-inter-cellular-communication"]], "Exploring possible parameters": [[1093, "exploring-possible-parameters"]]}, "indexentries": {"module": [[0, "module-pypath"], [1, "module-pypath.core"], [2, "module-pypath.core.attrs"], [4, "module-pypath.core.common"], [6, "module-pypath.core.complex"], [28, "module-pypath.core.entity"], [32, "module-pypath.core.enz_sub"], [38, "module-pypath.core.evidence"], [41, "module-pypath.core.interaction"], [45, "module-pypath.core.intercell_annot"], [47, "module-pypath.core.network"], [53, "module-pypath.data"], [56, "module-pypath.inputs"], [57, "module-pypath.inputs.abs"], [59, "module-pypath.inputs.acsn"], [62, "module-pypath.inputs.adhesome"], [65, "module-pypath.inputs.adrecs"], [75, "module-pypath.inputs.almen2009"], [77, "module-pypath.inputs.baccin2019"], [80, "module-pypath.inputs.biogps"], [86, "module-pypath.inputs.biogrid"], [89, "module-pypath.inputs.biomart"], [95, "module-pypath.inputs.biomodels"], [101, "module-pypath.inputs.ca1"], [103, "module-pypath.inputs.cancercellmap"], [105, "module-pypath.inputs.cancerdrugsdb"], [109, "module-pypath.inputs.cancersea"], [111, "module-pypath.inputs.cell"], [113, "module-pypath.inputs.cellcall"], [118, "module-pypath.inputs.cellcellinteractions"], [120, "module-pypath.inputs.cellchatdb"], [126, "module-pypath.inputs.cellinker"], [138, "module-pypath.inputs.cellphonedb"], [145, "module-pypath.inputs.celltalkdb"], [149, "module-pypath.inputs.celltypist"], [151, "module-pypath.inputs.chembl"], [159, "module-pypath.inputs.clinvar"], [162, "module-pypath.inputs.collectri"], [165, "module-pypath.inputs.common"], [172, "module-pypath.inputs.compath"], [174, "module-pypath.inputs.compleat"], [177, "module-pypath.inputs.complexportal"], [179, "module-pypath.inputs.comppi"], [182, "module-pypath.inputs.connectomedb"], [185, "module-pypath.inputs.corum"], [187, "module-pypath.inputs.cosmic"], [189, "module-pypath.inputs.cpad"], [193, "module-pypath.inputs.cpdb"], [196, "module-pypath.inputs.credentials"], [198, "module-pypath.inputs.csa"], [200, "module-pypath.inputs.cspa"], [204, "module-pypath.inputs.ctdbase"], [207, "module-pypath.inputs.cytosig"], [210, "module-pypath.inputs.dbptm"], [214, "module-pypath.inputs.ddinter"], [220, "module-pypath.inputs.deathdomain"], [223, "module-pypath.inputs.depod"], [226, "module-pypath.inputs.dgidb"], [230, "module-pypath.inputs.dip"], [233, "module-pypath.inputs.diseases"], [241, "module-pypath.inputs.domino"], [246, "module-pypath.inputs.dorothea"], [257, "module-pypath.inputs.drugbank"], [264, "module-pypath.inputs.drugcentral"], [268, "module-pypath.inputs.ebi"], [270, "module-pypath.inputs.elm"], [275, "module-pypath.inputs.embopress"], [277, "module-pypath.inputs.embrace"], [282, "module-pypath.inputs.encode"], [284, "module-pypath.inputs.ensembl"], [286, "module-pypath.inputs.eutils"], [288, "module-pypath.inputs.exocarta"], [291, "module-pypath.inputs.expasy"], [294, "module-pypath.inputs.genecards"], [299, "module-pypath.inputs.go"], [321, "module-pypath.inputs.gpcrdb"], [323, "module-pypath.inputs.graphviz"], [325, "module-pypath.inputs.guide2pharma"], [329, "module-pypath.inputs.gutmgene"], [334, "module-pypath.inputs.havugimana"], [337, "module-pypath.inputs.hgnc"], [339, "module-pypath.inputs.hippie"], [341, "module-pypath.inputs.hmdb"], [342, "module-pypath.inputs.hmdb.common"], [347, "module-pypath.inputs.hmdb.metabolites"], [352, "module-pypath.inputs.hmdb.proteins"], [357, "module-pypath.inputs.hmdb.schema"], [358, "module-pypath.inputs.hmdb.schema.common"], [360, "module-pypath.inputs.hmdb.schema.metabolites"], [361, "module-pypath.inputs.hmdb.schema.proteins"], [362, "module-pypath.inputs.hmdb.structures"], [364, "module-pypath.inputs.hmdb.visual"], [367, "module-pypath.inputs.hmdb.xml"], [369, "module-pypath.inputs.homologene"], [373, "module-pypath.inputs.hpmr"], [379, "module-pypath.inputs.hpo"], [384, "module-pypath.inputs.hprd"], [389, "module-pypath.inputs.htri"], [391, "module-pypath.inputs.humancellmap"], [393, "module-pypath.inputs.humap"], [396, "module-pypath.inputs.humsavar"], [398, "module-pypath.inputs.huri"], [411, "module-pypath.inputs.i3d"], [413, "module-pypath.inputs.icellnet"], [418, "module-pypath.inputs.ielm"], [421, "module-pypath.inputs.imweb"], [424, "module-pypath.inputs.innatedb"], [426, "module-pypath.inputs.instruct"], [429, "module-pypath.inputs.intact"], [431, "module-pypath.inputs.integrins"], [433, "module-pypath.inputs.interpro"], [438, "module-pypath.inputs.intogen"], [440, "module-pypath.inputs.ipi"], [442, "module-pypath.inputs.iptmnet"], [445, "module-pypath.inputs.italk"], [449, "module-pypath.inputs.kea"], [452, "module-pypath.inputs.kegg"], [462, "module-pypath.inputs.kegg_api"], [479, "module-pypath.inputs.kinasedotcom"], [481, "module-pypath.inputs.kirouac2010"], [483, "module-pypath.inputs.lambert2018"], [486, "module-pypath.inputs.laudanna"], [489, "module-pypath.inputs.li2012"], [494, "module-pypath.inputs.lincs"], [496, "module-pypath.inputs.lmpid"], [500, "module-pypath.inputs.lncdisease"], [502, "module-pypath.inputs.lncrnadb"], [504, "module-pypath.inputs.locate"], [506, "module-pypath.inputs.lrdb"], [510, "module-pypath.inputs.macrophage"], [512, "module-pypath.inputs.main"], [513, "module-pypath.inputs.matrisome"], [515, "module-pypath.inputs.matrixdb"], [521, "module-pypath.inputs.mcam"], [523, "module-pypath.inputs.membranome"], [525, "module-pypath.inputs.mimp"], [529, "module-pypath.inputs.mir2disease"], [531, "module-pypath.inputs.mirbase"], [539, "module-pypath.inputs.mirdeathdb"], [541, "module-pypath.inputs.mirecords"], [543, "module-pypath.inputs.mirtarbase"], [545, "module-pypath.inputs.mitab"], [548, "module-pypath.inputs.mppi"], [550, "module-pypath.inputs.msigdb"], [554, "module-pypath.inputs.ncrdeathdb"], [556, "module-pypath.inputs.negatome"], [558, "module-pypath.inputs.netbiol"], [561, "module-pypath.inputs.netpath"], [565, "module-pypath.inputs.offsides"], [567, "module-pypath.inputs.oma"], [570, "module-pypath.inputs.ontology"], [573, "module-pypath.inputs.opentargets"], [579, "module-pypath.inputs.opm"], [581, "module-pypath.inputs.oreganno"], [584, "module-pypath.inputs.panglaodb"], [587, "module-pypath.inputs.pathophenodb"], [590, "module-pypath.inputs.pathwaycommons"], [607, "module-pypath.inputs.pazar"], [609, "module-pypath.inputs.pdb"], [613, "module-pypath.inputs.pdzbase"], [615, "module-pypath.inputs.pepcyber"], [618, "module-pypath.inputs.pfam"], [623, "module-pypath.inputs.pharos"], [632, "module-pypath.inputs.phobius"], [634, "module-pypath.inputs.phosphatome"], [636, "module-pypath.inputs.phosphoelm"], [640, "module-pypath.inputs.phosphonetworks"], [643, "module-pypath.inputs.phosphopoint"], [646, "module-pypath.inputs.phosphosite"], [659, "module-pypath.inputs.pisa"], [663, "module-pypath.inputs.pro"], [666, "module-pypath.inputs.progeny"], [669, "module-pypath.inputs.proteinatlas"], [674, "module-pypath.inputs.proteins"], [676, "module-pypath.inputs.protmapper"], [680, "module-pypath.inputs.pubchem"], [682, "module-pypath.inputs.pubmed"], [689, "module-pypath.inputs.ramilowski2015"], [692, "module-pypath.inputs.ramp"], [699, "module-pypath.inputs.rdata"], [700, "module-pypath.inputs.reaction"], [720, "module-pypath.inputs.reactome"], [725, "module-pypath.inputs.scconnect"], [729, "module-pypath.inputs.science"], [731, "module-pypath.inputs.sider"], [740, "module-pypath.inputs.signalink"], [745, "module-pypath.inputs.signor"], [752, "module-pypath.inputs.spike"], [755, "module-pypath.inputs.stitch"], [758, "module-pypath.inputs.string"], [763, "module-pypath.inputs.surfaceome"], [765, "module-pypath.inputs.switches_elm"], [767, "module-pypath.inputs.talklr"], [771, "module-pypath.inputs.tcdb"], [775, "module-pypath.inputs.tfcensus"], [777, "module-pypath.inputs.threedcomplex"], [783, "module-pypath.inputs.threedid"], [788, "module-pypath.inputs.topdb"], [790, "module-pypath.inputs.transmir"], [792, "module-pypath.inputs.trip"], [799, "module-pypath.inputs.trrust"], [803, "module-pypath.inputs.twosides"], [805, "module-pypath.inputs.unichem"], [810, "module-pypath.inputs.uniprot"], [837, "module-pypath.inputs.uniprot_db"], [846, "module-pypath.inputs.wang"], [851, "module-pypath.inputs.wojtowicz2020"], [854, "module-pypath.inputs.zhong2015"], [856, "module-pypath.internals"], [857, "module-pypath.internals.annot_formats"], [862, "module-pypath.internals.input_formats"], [876, "module-pypath.internals.intera"], [886, "module-pypath.internals.license"], [892, "module-pypath.internals.maps"], [893, "module-pypath.internals.refs"], [896, "module-pypath.internals.resource"], [904, "module-pypath.legacy"], [905, "module-pypath.legacy.db_categories"], [909, "module-pypath.resources"], [910, "module-pypath.resources.controller"], [912, "module-pypath.resources.data"], [913, "module-pypath.resources.data_formats"], [923, "module-pypath.resources.licenses"], [925, "module-pypath.resources.network"], [929, "module-pypath.resources.urls"], [930, "module-pypath.share"], [931, "module-pypath.share.cache"], [936, "module-pypath.share.common"], [937, "module-pypath.share.constants"], [938, "module-pypath.share.curl"], [955, "module-pypath.share.progress"], [957, "module-pypath.share.session"], [958, "module-pypath.share.settings"], [959, "module-pypath.utils"], [960, "module-pypath.utils.go"], [968, "module-pypath.utils.mapping"], [987, "module-pypath.utils.metabo"], [988, "module-pypath.utils.orthology"], [1009, "module-pypath.utils.pdb"], [1014, "module-pypath.utils.proteomicsdb"], [1016, "module-pypath.utils.pyreact"], [1031, "module-pypath.utils.reflists"], [1039, "module-pypath.utils.residues"], [1041, "module-pypath.utils.seq"], [1048, "module-pypath.utils.taxonomy"], [1063, "module-pypath.utils.unichem"], [1065, "module-pypath.visual"], [1066, "module-pypath.visual.drawing"], [1069, "module-pypath.visual.igraph_drawing"], [1075, "module-pypath.visual.igraph_drawing.edge"], [1082, "module-pypath.visual.igraph_drawing.vertex"]], "pypath": [[0, "module-pypath"]], "pypath.core": [[1, "module-pypath.core"]], "pypath.core.attrs": [[2, "module-pypath.core.attrs"]], "attributehandler (class in pypath.core.attrs)": [[3, "pypath.core.attrs.AttributeHandler"]], "__init__() (pypath.core.attrs.attributehandler method)": [[3, "pypath.core.attrs.AttributeHandler.__init__"]], "serialize() (pypath.core.attrs.attributehandler method)": [[3, "pypath.core.attrs.AttributeHandler.serialize"]], "update_attrs() (pypath.core.attrs.attributehandler method)": [[3, "pypath.core.attrs.AttributeHandler.update_attrs"]], "pypath.core.common": [[4, "module-pypath.core.common"]], "filter_network_df() (in module pypath.core.common)": [[5, "pypath.core.common.filter_network_df"]], "pypath.core.complex": [[6, "module-pypath.core.complex"]], "abstractcomplexresource (class in pypath.core.complex)": [[7, "pypath.core.complex.AbstractComplexResource"]], "__init__() (pypath.core.complex.abstractcomplexresource method)": [[7, "pypath.core.complex.AbstractComplexResource.__init__"]], "load_data() (pypath.core.complex.abstractcomplexresource method)": [[7, "pypath.core.complex.AbstractComplexResource.load_data"]], "process() (pypath.core.complex.abstractcomplexresource method)": [[7, "pypath.core.complex.AbstractComplexResource.process"]], "set_method() (pypath.core.complex.abstractcomplexresource method)": [[7, "pypath.core.complex.AbstractComplexResource.set_method"]], "cellphonedb (class in pypath.core.complex)": [[8, "pypath.core.complex.CellPhoneDB"]], "__init__() (pypath.core.complex.cellphonedb method)": [[8, "pypath.core.complex.CellPhoneDB.__init__"]], "load_data() (pypath.core.complex.cellphonedb method)": [[8, "pypath.core.complex.CellPhoneDB.load_data"]], "process() (pypath.core.complex.cellphonedb method)": [[8, "pypath.core.complex.CellPhoneDB.process"]], "set_method() (pypath.core.complex.cellphonedb method)": [[8, "pypath.core.complex.CellPhoneDB.set_method"]], "cellchatdb (class in pypath.core.complex)": [[9, "pypath.core.complex.Cellchatdb"]], "__init__() (pypath.core.complex.cellchatdb method)": [[9, "pypath.core.complex.Cellchatdb.__init__"]], "load_data() (pypath.core.complex.cellchatdb method)": [[9, "pypath.core.complex.Cellchatdb.load_data"]], "process() (pypath.core.complex.cellchatdb method)": [[9, "pypath.core.complex.Cellchatdb.process"]], "set_method() (pypath.core.complex.cellchatdb method)": [[9, "pypath.core.complex.Cellchatdb.set_method"]], "cellinker (class in pypath.core.complex)": [[10, "pypath.core.complex.Cellinker"]], "__init__() (pypath.core.complex.cellinker method)": [[10, "pypath.core.complex.Cellinker.__init__"]], "load_data() (pypath.core.complex.cellinker method)": [[10, "pypath.core.complex.Cellinker.load_data"]], "process() (pypath.core.complex.cellinker method)": [[10, "pypath.core.complex.Cellinker.process"]], "set_method() (pypath.core.complex.cellinker method)": [[10, "pypath.core.complex.Cellinker.set_method"]], "compleat (class in pypath.core.complex)": [[11, "pypath.core.complex.Compleat"]], "__init__() (pypath.core.complex.compleat method)": [[11, "pypath.core.complex.Compleat.__init__"]], "load_data() (pypath.core.complex.compleat method)": [[11, "pypath.core.complex.Compleat.load_data"]], "process() (pypath.core.complex.compleat method)": [[11, "pypath.core.complex.Compleat.process"]], "set_method() (pypath.core.complex.compleat method)": [[11, "pypath.core.complex.Compleat.set_method"]], "complexaggregator (class in pypath.core.complex)": [[12, "pypath.core.complex.ComplexAggregator"]], "__init__() (pypath.core.complex.complexaggregator method)": [[12, "pypath.core.complex.ComplexAggregator.__init__"]], "load_data() (pypath.core.complex.complexaggregator method)": [[12, "pypath.core.complex.ComplexAggregator.load_data"]], "process() (pypath.core.complex.complexaggregator method)": [[12, "pypath.core.complex.ComplexAggregator.process"]], "reload() (pypath.core.complex.complexaggregator method)": [[12, "pypath.core.complex.ComplexAggregator.reload"]], "set_method() (pypath.core.complex.complexaggregator method)": [[12, "pypath.core.complex.ComplexAggregator.set_method"]], "complexportal (class in pypath.core.complex)": [[13, "pypath.core.complex.ComplexPortal"]], "__init__() (pypath.core.complex.complexportal method)": [[13, "pypath.core.complex.ComplexPortal.__init__"]], "load_data() (pypath.core.complex.complexportal method)": [[13, "pypath.core.complex.ComplexPortal.load_data"]], "process() (pypath.core.complex.complexportal method)": [[13, "pypath.core.complex.ComplexPortal.process"]], "set_method() (pypath.core.complex.complexportal method)": [[13, "pypath.core.complex.ComplexPortal.set_method"]], "corum (class in pypath.core.complex)": [[14, "pypath.core.complex.Corum"]], "__init__() (pypath.core.complex.corum method)": [[14, "pypath.core.complex.Corum.__init__"]], "load_data() (pypath.core.complex.corum method)": [[14, "pypath.core.complex.Corum.load_data"]], "process() (pypath.core.complex.corum method)": [[14, "pypath.core.complex.Corum.process"]], "set_method() (pypath.core.complex.corum method)": [[14, "pypath.core.complex.Corum.set_method"]], "guidetopharmacology (class in pypath.core.complex)": [[15, "pypath.core.complex.GuideToPharmacology"]], "__init__() (pypath.core.complex.guidetopharmacology method)": [[15, "pypath.core.complex.GuideToPharmacology.__init__"]], "load_data() (pypath.core.complex.guidetopharmacology method)": [[15, "pypath.core.complex.GuideToPharmacology.load_data"]], "process() (pypath.core.complex.guidetopharmacology method)": [[15, "pypath.core.complex.GuideToPharmacology.process"]], "set_method() (pypath.core.complex.guidetopharmacology method)": [[15, "pypath.core.complex.GuideToPharmacology.set_method"]], "havugimana (class in pypath.core.complex)": [[16, "pypath.core.complex.Havugimana"]], "__init__() (pypath.core.complex.havugimana method)": [[16, "pypath.core.complex.Havugimana.__init__"]], "load_data() (pypath.core.complex.havugimana method)": [[16, "pypath.core.complex.Havugimana.load_data"]], "process() (pypath.core.complex.havugimana method)": [[16, "pypath.core.complex.Havugimana.process"]], "set_method() (pypath.core.complex.havugimana method)": [[16, "pypath.core.complex.Havugimana.set_method"]], "hpmr (class in pypath.core.complex)": [[17, "pypath.core.complex.Hpmr"]], "__init__() (pypath.core.complex.hpmr method)": [[17, "pypath.core.complex.Hpmr.__init__"]], "load_data() (pypath.core.complex.hpmr method)": [[17, "pypath.core.complex.Hpmr.load_data"]], "process() (pypath.core.complex.hpmr method)": [[17, "pypath.core.complex.Hpmr.process"]], "set_method() (pypath.core.complex.hpmr method)": [[17, "pypath.core.complex.Hpmr.set_method"]], "humap (class in pypath.core.complex)": [[18, "pypath.core.complex.Humap"]], "__init__() (pypath.core.complex.humap method)": [[18, "pypath.core.complex.Humap.__init__"]], "load_data() (pypath.core.complex.humap method)": [[18, "pypath.core.complex.Humap.load_data"]], "process() (pypath.core.complex.humap method)": [[18, "pypath.core.complex.Humap.process"]], "set_method() (pypath.core.complex.humap method)": [[18, "pypath.core.complex.Humap.set_method"]], "humap2 (class in pypath.core.complex)": [[19, "pypath.core.complex.Humap2"]], "__init__() (pypath.core.complex.humap2 method)": [[19, "pypath.core.complex.Humap2.__init__"]], "load_data() (pypath.core.complex.humap2 method)": [[19, "pypath.core.complex.Humap2.load_data"]], "process() (pypath.core.complex.humap2 method)": [[19, "pypath.core.complex.Humap2.process"]], "set_method() (pypath.core.complex.humap2 method)": [[19, "pypath.core.complex.Humap2.set_method"]], "icellnet (class in pypath.core.complex)": [[20, "pypath.core.complex.Icellnet"]], "__init__() (pypath.core.complex.icellnet method)": [[20, "pypath.core.complex.Icellnet.__init__"]], "load_data() (pypath.core.complex.icellnet method)": [[20, "pypath.core.complex.Icellnet.load_data"]], "process() (pypath.core.complex.icellnet method)": [[20, "pypath.core.complex.Icellnet.process"]], "set_method() (pypath.core.complex.icellnet method)": [[20, "pypath.core.complex.Icellnet.set_method"]], "kegg (class in pypath.core.complex)": [[21, "pypath.core.complex.Kegg"]], "__init__() (pypath.core.complex.kegg method)": [[21, "pypath.core.complex.Kegg.__init__"]], "load_data() (pypath.core.complex.kegg method)": [[21, "pypath.core.complex.Kegg.load_data"]], "process() (pypath.core.complex.kegg method)": [[21, "pypath.core.complex.Kegg.process"]], "set_method() (pypath.core.complex.kegg method)": [[21, "pypath.core.complex.Kegg.set_method"]], "pdb (class in pypath.core.complex)": [[22, "pypath.core.complex.Pdb"]], "__init__() (pypath.core.complex.pdb method)": [[22, "pypath.core.complex.Pdb.__init__"]], "load_data() (pypath.core.complex.pdb method)": [[22, "pypath.core.complex.Pdb.load_data"]], "process() (pypath.core.complex.pdb method)": [[22, "pypath.core.complex.Pdb.process"]], "set_method() (pypath.core.complex.pdb method)": [[22, "pypath.core.complex.Pdb.set_method"]], "signor (class in pypath.core.complex)": [[23, "pypath.core.complex.Signor"]], "__init__() (pypath.core.complex.signor method)": [[23, "pypath.core.complex.Signor.__init__"]], "load_data() (pypath.core.complex.signor method)": [[23, "pypath.core.complex.Signor.load_data"]], "process() (pypath.core.complex.signor method)": [[23, "pypath.core.complex.Signor.process"]], "set_method() (pypath.core.complex.signor method)": [[23, "pypath.core.complex.Signor.set_method"]], "spike (class in pypath.core.complex)": [[24, "pypath.core.complex.Spike"]], "__init__() (pypath.core.complex.spike method)": [[24, "pypath.core.complex.Spike.__init__"]], "load_data() (pypath.core.complex.spike method)": [[24, "pypath.core.complex.Spike.load_data"]], "process() (pypath.core.complex.spike method)": [[24, "pypath.core.complex.Spike.process"]], "set_method() (pypath.core.complex.spike method)": [[24, "pypath.core.complex.Spike.set_method"]], "all_complexes() (in module pypath.core.complex)": [[25, "pypath.core.complex.all_complexes"]], "get_db() (in module pypath.core.complex)": [[26, "pypath.core.complex.get_db"]], "init_db() (in module pypath.core.complex)": [[27, "pypath.core.complex.init_db"]], "pypath.core.entity": [[28, "module-pypath.core.entity"]], "entity (class in pypath.core.entity)": [[29, "pypath.core.entity.Entity"]], "__init__() (pypath.core.entity.entity method)": [[29, "pypath.core.entity.Entity.__init__"]], "count_entity_type() (pypath.core.entity.entity class method)": [[29, "pypath.core.entity.Entity.count_entity_type"]], "filter_entity_type() (pypath.core.entity.entity class method)": [[29, "pypath.core.entity.Entity.filter_entity_type"]], "serialize() (pypath.core.entity.entity method)": [[29, "pypath.core.entity.Entity.serialize"]], "update_attrs() (pypath.core.entity.entity method)": [[29, "pypath.core.entity.Entity.update_attrs"]], "entitykey (class in pypath.core.entity)": [[30, "pypath.core.entity.EntityKey"]], "__init__() (pypath.core.entity.entitykey method)": [[30, "pypath.core.entity.EntityKey.__init__"]], "count() (pypath.core.entity.entitykey method)": [[30, "pypath.core.entity.EntityKey.count"]], "entity_type (pypath.core.entity.entitykey attribute)": [[30, "pypath.core.entity.EntityKey.entity_type"]], "id_type (pypath.core.entity.entitykey attribute)": [[30, "pypath.core.entity.EntityKey.id_type"]], "identifier (pypath.core.entity.entitykey attribute)": [[30, "pypath.core.entity.EntityKey.identifier"]], "index() (pypath.core.entity.entitykey method)": [[30, "pypath.core.entity.EntityKey.index"]], "taxon (pypath.core.entity.entitykey attribute)": [[30, "pypath.core.entity.EntityKey.taxon"]], "entitylist (class in pypath.core.entity)": [[31, "pypath.core.entity.EntityList"]], "__init__() (pypath.core.entity.entitylist method)": [[31, "pypath.core.entity.EntityList.__init__"]], "pypath.core.enz_sub": [[32, "module-pypath.core.enz_sub"]], "enzymesubstrateaggregator (class in pypath.core.enz_sub)": [[33, "pypath.core.enz_sub.EnzymeSubstrateAggregator"]], "__init__() (pypath.core.enz_sub.enzymesubstrateaggregator method)": [[33, "pypath.core.enz_sub.EnzymeSubstrateAggregator.__init__"]], "assign_to_network() (pypath.core.enz_sub.enzymesubstrateaggregator method)": [[33, "pypath.core.enz_sub.EnzymeSubstrateAggregator.assign_to_network"]], "build_list() (pypath.core.enz_sub.enzymesubstrateaggregator method)": [[33, "pypath.core.enz_sub.EnzymeSubstrateAggregator.build_list"]], "unique() (pypath.core.enz_sub.enzymesubstrateaggregator method)": [[33, "pypath.core.enz_sub.EnzymeSubstrateAggregator.unique"]], "enzymesubstrateorthologyprocessor (class in pypath.core.enz_sub)": [[34, "pypath.core.enz_sub.EnzymeSubstrateOrthologyProcessor"]], "__init__() (pypath.core.enz_sub.enzymesubstrateorthologyprocessor method)": [[34, "pypath.core.enz_sub.EnzymeSubstrateOrthologyProcessor.__init__"]], "load_data() (pypath.core.enz_sub.enzymesubstrateorthologyprocessor method)": [[34, "pypath.core.enz_sub.EnzymeSubstrateOrthologyProcessor.load_data"]], "ptm_orthology() (pypath.core.enz_sub.enzymesubstrateorthologyprocessor method)": [[34, "pypath.core.enz_sub.EnzymeSubstrateOrthologyProcessor.ptm_orthology"]], "set_inputargs() (pypath.core.enz_sub.enzymesubstrateorthologyprocessor method)": [[34, "pypath.core.enz_sub.EnzymeSubstrateOrthologyProcessor.set_inputargs"]], "set_method() (pypath.core.enz_sub.enzymesubstrateorthologyprocessor method)": [[34, "pypath.core.enz_sub.EnzymeSubstrateOrthologyProcessor.set_method"]], "translate() (pypath.core.enz_sub.enzymesubstrateorthologyprocessor method)": [[34, "pypath.core.enz_sub.EnzymeSubstrateOrthologyProcessor.translate"]], "translate_site() (pypath.core.enz_sub.enzymesubstrateorthologyprocessor method)": [[34, "pypath.core.enz_sub.EnzymeSubstrateOrthologyProcessor.translate_site"]], "enzymesubstrateprocessor (class in pypath.core.enz_sub)": [[35, "pypath.core.enz_sub.EnzymeSubstrateProcessor"]], "__init__() (pypath.core.enz_sub.enzymesubstrateprocessor method)": [[35, "pypath.core.enz_sub.EnzymeSubstrateProcessor.__init__"]], "load_data() (pypath.core.enz_sub.enzymesubstrateprocessor method)": [[35, "pypath.core.enz_sub.EnzymeSubstrateProcessor.load_data"]], "set_inputargs() (pypath.core.enz_sub.enzymesubstrateprocessor method)": [[35, "pypath.core.enz_sub.EnzymeSubstrateProcessor.set_inputargs"]], "set_method() (pypath.core.enz_sub.enzymesubstrateprocessor method)": [[35, "pypath.core.enz_sub.EnzymeSubstrateProcessor.set_method"]], "get_db() (in module pypath.core.enz_sub)": [[36, "pypath.core.enz_sub.get_db"]], "init_db() (in module pypath.core.enz_sub)": [[37, "pypath.core.enz_sub.init_db"]], "pypath.core.evidence": [[38, "module-pypath.core.evidence"]], "evidence (class in pypath.core.evidence)": [[39, "pypath.core.evidence.Evidence"]], "__init__() (pypath.core.evidence.evidence method)": [[39, "pypath.core.evidence.Evidence.__init__"]], "asdict() (pypath.core.evidence.evidence method)": [[39, "pypath.core.evidence.Evidence.asdict"]], "has_interaction_type() (pypath.core.evidence.evidence method)": [[39, "pypath.core.evidence.Evidence.has_interaction_type"]], "merge() (pypath.core.evidence.evidence method)": [[39, "pypath.core.evidence.Evidence.merge"]], "pubmeds (pypath.core.evidence.evidence property)": [[39, "pypath.core.evidence.Evidence.pubmeds"]], "reload() (pypath.core.evidence.evidence method)": [[39, "pypath.core.evidence.Evidence.reload"]], "serialize() (pypath.core.evidence.evidence method)": [[39, "pypath.core.evidence.Evidence.serialize"]], "update_attrs() (pypath.core.evidence.evidence method)": [[39, "pypath.core.evidence.Evidence.update_attrs"]], "evidences (class in pypath.core.evidence)": [[40, "pypath.core.evidence.Evidences"]], "__init__() (pypath.core.evidence.evidences method)": [[40, "pypath.core.evidence.Evidences.__init__"]], "asdict() (pypath.core.evidence.evidences method)": [[40, "pypath.core.evidence.Evidences.asdict"]], "attrs (pypath.core.evidence.evidences property)": [[40, "pypath.core.evidence.Evidences.attrs"]], "datasets (pypath.core.evidence.evidences property)": [[40, "pypath.core.evidence.Evidences.datasets"]], "has_dataset() (pypath.core.evidence.evidences method)": [[40, "pypath.core.evidence.Evidences.has_dataset"]], "has_interaction_type() (pypath.core.evidence.evidences method)": [[40, "pypath.core.evidence.Evidences.has_interaction_type"]], "items() (pypath.core.evidence.evidences method)": [[40, "pypath.core.evidence.Evidences.items"]], "keys() (pypath.core.evidence.evidences method)": [[40, "pypath.core.evidence.Evidences.keys"]], "reload() (pypath.core.evidence.evidences method)": [[40, "pypath.core.evidence.Evidences.reload"]], "serialize_attrs() (pypath.core.evidence.evidences method)": [[40, "pypath.core.evidence.Evidences.serialize_attrs"]], "simple_dict (pypath.core.evidence.evidences property)": [[40, "pypath.core.evidence.Evidences.simple_dict"]], "pypath.core.interaction": [[41, "module-pypath.core.interaction"]], "interaction (class in pypath.core.interaction)": [[42, "pypath.core.interaction.Interaction"]], "__init__() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.__init__"]], "add_evidence() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.add_evidence"]], "add_sign() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.add_sign"]], "asdict() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.asdict"]], "complex_identifiers_by_data_model() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.complex_identifiers_by_data_model"]], "complex_identifiers_by_interaction_type() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.complex_identifiers_by_interaction_type"]], "complex_identifiers_by_interaction_type_and_data_model() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.complex_identifiers_by_interaction_type_and_data_model"]], "complex_identifiers_by_interaction_type_and_data_model_and_resource() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.complex_identifiers_by_interaction_type_and_data_model_and_resource"]], "complex_identifiers_by_reference() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.complex_identifiers_by_reference"]], "complex_identifiers_by_resource() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.complex_identifiers_by_resource"]], "complex_labels_by_data_model() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.complex_labels_by_data_model"]], "complex_labels_by_interaction_type() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.complex_labels_by_interaction_type"]], "complex_labels_by_interaction_type_and_data_model() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.complex_labels_by_interaction_type_and_data_model"]], "complex_labels_by_interaction_type_and_data_model_and_resource() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.complex_labels_by_interaction_type_and_data_model_and_resource"]], "complex_labels_by_reference() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.complex_labels_by_reference"]], "complex_labels_by_resource() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.complex_labels_by_resource"]], "complexes_by_data_model() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.complexes_by_data_model"]], "complexes_by_interaction_type() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.complexes_by_interaction_type"]], "complexes_by_interaction_type_and_data_model() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.complexes_by_interaction_type_and_data_model"]], "complexes_by_interaction_type_and_data_model_and_resource() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.complexes_by_interaction_type_and_data_model_and_resource"]], "complexes_by_reference() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.complexes_by_reference"]], "complexes_by_resource() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.complexes_by_resource"]], "consensus() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.consensus"]], "consensus_edges() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.consensus_edges"]], "count_complex_identifiers() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.count_complex_identifiers"]], "count_complex_labels() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.count_complex_labels"]], "count_complexes() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.count_complexes"]], "count_data_models (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.count_data_models"]], "count_degrees_directed (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.count_degrees_directed"]], "count_degrees_directed_in (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.count_degrees_directed_in"]], "count_degrees_directed_out (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.count_degrees_directed_out"]], "count_degrees_negative (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.count_degrees_negative"]], "count_degrees_negative_in (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.count_degrees_negative_in"]], "count_degrees_negative_out (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.count_degrees_negative_out"]], "count_degrees_non_directed (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.count_degrees_non_directed"]], "count_degrees_positive (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.count_degrees_positive"]], "count_degrees_positive_in (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.count_degrees_positive_in"]], "count_degrees_positive_out (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.count_degrees_positive_out"]], "count_degrees_signed (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.count_degrees_signed"]], "count_degrees_signed_in (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.count_degrees_signed_in"]], "count_degrees_signed_out (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.count_degrees_signed_out"]], "count_degrees_undirected (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.count_degrees_undirected"]], "count_entities() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.count_entities"]], "count_identifiers() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.count_identifiers"]], "count_interaction_types (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.count_interaction_types"]], "count_interactions() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.count_interactions"]], "count_interactions_0() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.count_interactions_0"]], "count_interactions_directed() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.count_interactions_directed"]], "count_interactions_mutual() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.count_interactions_mutual"]], "count_interactions_negative() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.count_interactions_negative"]], "count_interactions_non_directed() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.count_interactions_non_directed"]], "count_interactions_positive() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.count_interactions_positive"]], "count_interactions_signed() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.count_interactions_signed"]], "count_interactions_undirected() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.count_interactions_undirected"]], "count_labels() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.count_labels"]], "count_lncrna_identifiers() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.count_lncrna_identifiers"]], "count_lncrna_labels() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.count_lncrna_labels"]], "count_lncrnas() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.count_lncrnas"]], "count_mirna_identifiers() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.count_mirna_identifiers"]], "count_mirna_labels() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.count_mirna_labels"]], "count_mirnas() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.count_mirnas"]], "count_protein_identifiers() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.count_protein_identifiers"]], "count_protein_labels() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.count_protein_labels"]], "count_proteins() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.count_proteins"]], "count_references (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.count_references"]], "count_resource_names (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.count_resource_names"]], "count_resource_names_via (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.count_resource_names_via"]], "count_resources (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.count_resources"]], "count_resources_via (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.count_resources_via"]], "count_small_molecule_identifiers() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.count_small_molecule_identifiers"]], "count_small_molecule_labels() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.count_small_molecule_labels"]], "count_small_molecules() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.count_small_molecules"]], "data_models_by_data_model (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.data_models_by_data_model"]], "data_models_by_interaction_type (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.data_models_by_interaction_type"]], "data_models_by_interaction_type_and_data_model (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.data_models_by_interaction_type_and_data_model"]], "data_models_by_interaction_type_and_data_model_and_resource (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.data_models_by_interaction_type_and_data_model_and_resource"]], "data_models_by_reference (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.data_models_by_reference"]], "data_models_by_resource (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.data_models_by_resource"]], "datasets_by_data_model (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.datasets_by_data_model"]], "datasets_by_interaction_type (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.datasets_by_interaction_type"]], "datasets_by_interaction_type_and_data_model (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.datasets_by_interaction_type_and_data_model"]], "datasets_by_interaction_type_and_data_model_and_resource (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.datasets_by_interaction_type_and_data_model_and_resource"]], "datasets_by_reference (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.datasets_by_reference"]], "datasets_by_resource (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.datasets_by_resource"]], "degrees_directed_by_data_model (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.degrees_directed_by_data_model"]], "degrees_directed_by_interaction_type (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.degrees_directed_by_interaction_type"]], "degrees_directed_by_interaction_type_and_data_model (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.degrees_directed_by_interaction_type_and_data_model"]], "degrees_directed_by_interaction_type_and_data_model_and_resource (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.degrees_directed_by_interaction_type_and_data_model_and_resource"]], "degrees_directed_by_reference (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.degrees_directed_by_reference"]], "degrees_directed_by_resource (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.degrees_directed_by_resource"]], "degrees_directed_in_by_data_model (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.degrees_directed_in_by_data_model"]], "degrees_directed_in_by_interaction_type (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.degrees_directed_in_by_interaction_type"]], "degrees_directed_in_by_interaction_type_and_data_model (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.degrees_directed_in_by_interaction_type_and_data_model"]], "degrees_directed_in_by_interaction_type_and_data_model_and_resource (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.degrees_directed_in_by_interaction_type_and_data_model_and_resource"]], "degrees_directed_in_by_reference (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.degrees_directed_in_by_reference"]], "degrees_directed_in_by_resource (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.degrees_directed_in_by_resource"]], "degrees_directed_out_by_data_model (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.degrees_directed_out_by_data_model"]], "degrees_directed_out_by_interaction_type (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.degrees_directed_out_by_interaction_type"]], "degrees_directed_out_by_interaction_type_and_data_model (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.degrees_directed_out_by_interaction_type_and_data_model"]], "degrees_directed_out_by_interaction_type_and_data_model_and_resource (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.degrees_directed_out_by_interaction_type_and_data_model_and_resource"]], "degrees_directed_out_by_reference (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.degrees_directed_out_by_reference"]], "degrees_directed_out_by_resource (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.degrees_directed_out_by_resource"]], "degrees_negative_by_data_model (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.degrees_negative_by_data_model"]], "degrees_negative_by_interaction_type (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.degrees_negative_by_interaction_type"]], "degrees_negative_by_interaction_type_and_data_model (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.degrees_negative_by_interaction_type_and_data_model"]], "degrees_negative_by_interaction_type_and_data_model_and_resource (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.degrees_negative_by_interaction_type_and_data_model_and_resource"]], "degrees_negative_by_reference (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.degrees_negative_by_reference"]], "degrees_negative_by_resource (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.degrees_negative_by_resource"]], "degrees_negative_in_by_data_model (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.degrees_negative_in_by_data_model"]], "degrees_negative_in_by_interaction_type (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.degrees_negative_in_by_interaction_type"]], "degrees_negative_in_by_interaction_type_and_data_model (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.degrees_negative_in_by_interaction_type_and_data_model"]], "degrees_negative_in_by_interaction_type_and_data_model_and_resource (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.degrees_negative_in_by_interaction_type_and_data_model_and_resource"]], "degrees_negative_in_by_reference (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.degrees_negative_in_by_reference"]], "degrees_negative_in_by_resource (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.degrees_negative_in_by_resource"]], "degrees_negative_out_by_data_model (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.degrees_negative_out_by_data_model"]], "degrees_negative_out_by_interaction_type (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.degrees_negative_out_by_interaction_type"]], "degrees_negative_out_by_interaction_type_and_data_model (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.degrees_negative_out_by_interaction_type_and_data_model"]], "degrees_negative_out_by_interaction_type_and_data_model_and_resource (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.degrees_negative_out_by_interaction_type_and_data_model_and_resource"]], "degrees_negative_out_by_reference (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.degrees_negative_out_by_reference"]], "degrees_negative_out_by_resource (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.degrees_negative_out_by_resource"]], "degrees_non_directed_by_data_model (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.degrees_non_directed_by_data_model"]], "degrees_non_directed_by_interaction_type (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.degrees_non_directed_by_interaction_type"]], "degrees_non_directed_by_interaction_type_and_data_model (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.degrees_non_directed_by_interaction_type_and_data_model"]], "degrees_non_directed_by_interaction_type_and_data_model_and_resource (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.degrees_non_directed_by_interaction_type_and_data_model_and_resource"]], "degrees_non_directed_by_reference (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.degrees_non_directed_by_reference"]], "degrees_non_directed_by_resource (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.degrees_non_directed_by_resource"]], "degrees_positive_by_data_model (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.degrees_positive_by_data_model"]], "degrees_positive_by_interaction_type (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.degrees_positive_by_interaction_type"]], "degrees_positive_by_interaction_type_and_data_model (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.degrees_positive_by_interaction_type_and_data_model"]], "degrees_positive_by_interaction_type_and_data_model_and_resource (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.degrees_positive_by_interaction_type_and_data_model_and_resource"]], "degrees_positive_by_reference (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.degrees_positive_by_reference"]], "degrees_positive_by_resource (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.degrees_positive_by_resource"]], "degrees_positive_in_by_data_model (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.degrees_positive_in_by_data_model"]], "degrees_positive_in_by_interaction_type (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.degrees_positive_in_by_interaction_type"]], "degrees_positive_in_by_interaction_type_and_data_model (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.degrees_positive_in_by_interaction_type_and_data_model"]], "degrees_positive_in_by_interaction_type_and_data_model_and_resource (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.degrees_positive_in_by_interaction_type_and_data_model_and_resource"]], "degrees_positive_in_by_reference (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.degrees_positive_in_by_reference"]], "degrees_positive_in_by_resource (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.degrees_positive_in_by_resource"]], "degrees_positive_out_by_data_model (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.degrees_positive_out_by_data_model"]], "degrees_positive_out_by_interaction_type (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.degrees_positive_out_by_interaction_type"]], "degrees_positive_out_by_interaction_type_and_data_model (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.degrees_positive_out_by_interaction_type_and_data_model"]], "degrees_positive_out_by_interaction_type_and_data_model_and_resource (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.degrees_positive_out_by_interaction_type_and_data_model_and_resource"]], "degrees_positive_out_by_reference (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.degrees_positive_out_by_reference"]], "degrees_positive_out_by_resource (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.degrees_positive_out_by_resource"]], "degrees_signed_by_data_model (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.degrees_signed_by_data_model"]], "degrees_signed_by_interaction_type (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.degrees_signed_by_interaction_type"]], "degrees_signed_by_interaction_type_and_data_model (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.degrees_signed_by_interaction_type_and_data_model"]], "degrees_signed_by_interaction_type_and_data_model_and_resource (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.degrees_signed_by_interaction_type_and_data_model_and_resource"]], "degrees_signed_by_reference (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.degrees_signed_by_reference"]], "degrees_signed_by_resource (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.degrees_signed_by_resource"]], "degrees_signed_in_by_data_model (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.degrees_signed_in_by_data_model"]], "degrees_signed_in_by_interaction_type (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.degrees_signed_in_by_interaction_type"]], "degrees_signed_in_by_interaction_type_and_data_model (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.degrees_signed_in_by_interaction_type_and_data_model"]], "degrees_signed_in_by_interaction_type_and_data_model_and_resource (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.degrees_signed_in_by_interaction_type_and_data_model_and_resource"]], "degrees_signed_in_by_reference (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.degrees_signed_in_by_reference"]], "degrees_signed_in_by_resource (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.degrees_signed_in_by_resource"]], "degrees_signed_out_by_data_model (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.degrees_signed_out_by_data_model"]], "degrees_signed_out_by_interaction_type (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.degrees_signed_out_by_interaction_type"]], "degrees_signed_out_by_interaction_type_and_data_model (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.degrees_signed_out_by_interaction_type_and_data_model"]], "degrees_signed_out_by_interaction_type_and_data_model_and_resource (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.degrees_signed_out_by_interaction_type_and_data_model_and_resource"]], "degrees_signed_out_by_reference (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.degrees_signed_out_by_reference"]], "degrees_signed_out_by_resource (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.degrees_signed_out_by_resource"]], "degrees_undirected_by_data_model (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.degrees_undirected_by_data_model"]], "degrees_undirected_by_interaction_type (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.degrees_undirected_by_interaction_type"]], "degrees_undirected_by_interaction_type_and_data_model (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.degrees_undirected_by_interaction_type_and_data_model"]], "degrees_undirected_by_interaction_type_and_data_model_and_resource (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.degrees_undirected_by_interaction_type_and_data_model_and_resource"]], "degrees_undirected_by_reference (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.degrees_undirected_by_reference"]], "degrees_undirected_by_resource (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.degrees_undirected_by_resource"]], "direction_key() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.direction_key"]], "dorothea_level() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.dorothea_level"]], "dorothea_levels() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.dorothea_levels"]], "entities_by_data_model() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.entities_by_data_model"]], "entities_by_interaction_type() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.entities_by_interaction_type"]], "entities_by_interaction_type_and_data_model() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.entities_by_interaction_type_and_data_model"]], "entities_by_interaction_type_and_data_model_and_resource() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.entities_by_interaction_type_and_data_model_and_resource"]], "entities_by_reference() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.entities_by_reference"]], "entities_by_resource() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.entities_by_resource"]], "evaluate_evidences() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.evaluate_evidences"]], "generate_df_records() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.generate_df_records"]], "get_attr() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.get_attr"]], "get_complex_identifiers() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.get_complex_identifiers"]], "get_complex_labels() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.get_complex_labels"]], "get_complexes() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.get_complexes"]], "get_data_models (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.get_data_models"]], "get_datasets (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.get_datasets"]], "get_degrees() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.get_degrees"]], "get_degrees_directed (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.get_degrees_directed"]], "get_degrees_directed_in (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.get_degrees_directed_in"]], "get_degrees_directed_out (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.get_degrees_directed_out"]], "get_degrees_negative (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.get_degrees_negative"]], "get_degrees_negative_in (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.get_degrees_negative_in"]], "get_degrees_negative_out (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.get_degrees_negative_out"]], "get_degrees_non_directed (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.get_degrees_non_directed"]], "get_degrees_positive (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.get_degrees_positive"]], "get_degrees_positive_in (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.get_degrees_positive_in"]], "get_degrees_positive_out (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.get_degrees_positive_out"]], "get_degrees_signed (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.get_degrees_signed"]], "get_degrees_signed_in (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.get_degrees_signed_in"]], "get_degrees_signed_out (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.get_degrees_signed_out"]], "get_degrees_undirected (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.get_degrees_undirected"]], "get_direction() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.get_direction"]], "get_directions() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.get_directions"]], "get_entities() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.get_entities"]], "get_identifiers() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.get_identifiers"]], "get_interaction_types (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.get_interaction_types"]], "get_interactions() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.get_interactions"]], "get_interactions_0() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.get_interactions_0"]], "get_interactions_directed() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.get_interactions_directed"]], "get_interactions_mutual() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.get_interactions_mutual"]], "get_interactions_negative() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.get_interactions_negative"]], "get_interactions_non_directed() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.get_interactions_non_directed"]], "get_interactions_non_directed_0() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.get_interactions_non_directed_0"]], "get_interactions_positive() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.get_interactions_positive"]], "get_interactions_signed() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.get_interactions_signed"]], "get_interactions_undirected() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.get_interactions_undirected"]], "get_interactions_undirected_0() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.get_interactions_undirected_0"]], "get_labels() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.get_labels"]], "get_lncrna_identifiers() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.get_lncrna_identifiers"]], "get_lncrna_labels() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.get_lncrna_labels"]], "get_lncrnas() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.get_lncrnas"]], "get_mirna_identifiers() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.get_mirna_identifiers"]], "get_mirna_labels() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.get_mirna_labels"]], "get_mirnas() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.get_mirnas"]], "get_protein_identifiers() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.get_protein_identifiers"]], "get_protein_labels() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.get_protein_labels"]], "get_proteins() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.get_proteins"]], "get_references (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.get_references"]], "get_resource_names (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.get_resource_names"]], "get_resource_names_via (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.get_resource_names_via"]], "get_resources (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.get_resources"]], "get_resources_via (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.get_resources_via"]], "get_sign() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.get_sign"]], "get_small_molecule_identifiers() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.get_small_molecule_identifiers"]], "get_small_molecule_labels() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.get_small_molecule_labels"]], "get_small_molecules() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.get_small_molecules"]], "has_sign() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.has_sign"]], "identifiers_by_data_model() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.identifiers_by_data_model"]], "identifiers_by_interaction_type() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.identifiers_by_interaction_type"]], "identifiers_by_interaction_type_and_data_model() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.identifiers_by_interaction_type_and_data_model"]], "identifiers_by_interaction_type_and_data_model_and_resource() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.identifiers_by_interaction_type_and_data_model_and_resource"]], "identifiers_by_reference() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.identifiers_by_reference"]], "identifiers_by_resource() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.identifiers_by_resource"]], "interaction_types_by_data_model (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.interaction_types_by_data_model"]], "interaction_types_by_interaction_type (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.interaction_types_by_interaction_type"]], "interaction_types_by_interaction_type_and_data_model (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.interaction_types_by_interaction_type_and_data_model"]], "interaction_types_by_interaction_type_and_data_model_and_resource (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.interaction_types_by_interaction_type_and_data_model_and_resource"]], "interaction_types_by_reference (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.interaction_types_by_reference"]], "interaction_types_by_resource (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.interaction_types_by_resource"]], "interactions_0_by_data_model() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.interactions_0_by_data_model"]], "interactions_0_by_interaction_type() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.interactions_0_by_interaction_type"]], "interactions_0_by_interaction_type_and_data_model() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.interactions_0_by_interaction_type_and_data_model"]], "interactions_0_by_interaction_type_and_data_model_and_resource() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.interactions_0_by_interaction_type_and_data_model_and_resource"]], "interactions_0_by_reference() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.interactions_0_by_reference"]], "interactions_0_by_resource() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.interactions_0_by_resource"]], "interactions_by_data_model() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.interactions_by_data_model"]], "interactions_by_interaction_type() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.interactions_by_interaction_type"]], "interactions_by_interaction_type_and_data_model() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.interactions_by_interaction_type_and_data_model"]], "interactions_by_interaction_type_and_data_model_and_resource() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.interactions_by_interaction_type_and_data_model_and_resource"]], "interactions_by_reference() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.interactions_by_reference"]], "interactions_by_resource() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.interactions_by_resource"]], "interactions_directed_by_data_model() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.interactions_directed_by_data_model"]], "interactions_directed_by_interaction_type() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.interactions_directed_by_interaction_type"]], "interactions_directed_by_interaction_type_and_data_model() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.interactions_directed_by_interaction_type_and_data_model"]], "interactions_directed_by_interaction_type_and_data_model_and_resource() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.interactions_directed_by_interaction_type_and_data_model_and_resource"]], "interactions_directed_by_reference() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.interactions_directed_by_reference"]], "interactions_directed_by_resource() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.interactions_directed_by_resource"]], "interactions_mutual_by_data_model() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.interactions_mutual_by_data_model"]], "interactions_mutual_by_interaction_type() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.interactions_mutual_by_interaction_type"]], "interactions_mutual_by_interaction_type_and_data_model() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.interactions_mutual_by_interaction_type_and_data_model"]], "interactions_mutual_by_interaction_type_and_data_model_and_resource() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.interactions_mutual_by_interaction_type_and_data_model_and_resource"]], "interactions_mutual_by_reference() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.interactions_mutual_by_reference"]], "interactions_mutual_by_resource() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.interactions_mutual_by_resource"]], "interactions_negative_by_data_model() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.interactions_negative_by_data_model"]], "interactions_negative_by_interaction_type() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.interactions_negative_by_interaction_type"]], "interactions_negative_by_interaction_type_and_data_model() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.interactions_negative_by_interaction_type_and_data_model"]], "interactions_negative_by_interaction_type_and_data_model_and_resource() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.interactions_negative_by_interaction_type_and_data_model_and_resource"]], "interactions_negative_by_reference() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.interactions_negative_by_reference"]], "interactions_negative_by_resource() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.interactions_negative_by_resource"]], "interactions_non_directed_0_by_data_model() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.interactions_non_directed_0_by_data_model"]], "interactions_non_directed_0_by_interaction_type() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.interactions_non_directed_0_by_interaction_type"]], "interactions_non_directed_0_by_interaction_type_and_data_model() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.interactions_non_directed_0_by_interaction_type_and_data_model"]], "interactions_non_directed_0_by_interaction_type_and_data_model_and_resource() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.interactions_non_directed_0_by_interaction_type_and_data_model_and_resource"]], "interactions_non_directed_0_by_reference() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.interactions_non_directed_0_by_reference"]], "interactions_non_directed_0_by_resource() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.interactions_non_directed_0_by_resource"]], "interactions_non_directed_by_data_model() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.interactions_non_directed_by_data_model"]], "interactions_non_directed_by_interaction_type() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.interactions_non_directed_by_interaction_type"]], "interactions_non_directed_by_interaction_type_and_data_model() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.interactions_non_directed_by_interaction_type_and_data_model"]], "interactions_non_directed_by_interaction_type_and_data_model_and_resource() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.interactions_non_directed_by_interaction_type_and_data_model_and_resource"]], "interactions_non_directed_by_reference() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.interactions_non_directed_by_reference"]], "interactions_non_directed_by_resource() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.interactions_non_directed_by_resource"]], "interactions_positive_by_data_model() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.interactions_positive_by_data_model"]], "interactions_positive_by_interaction_type() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.interactions_positive_by_interaction_type"]], "interactions_positive_by_interaction_type_and_data_model() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.interactions_positive_by_interaction_type_and_data_model"]], "interactions_positive_by_interaction_type_and_data_model_and_resource() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.interactions_positive_by_interaction_type_and_data_model_and_resource"]], "interactions_positive_by_reference() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.interactions_positive_by_reference"]], "interactions_positive_by_resource() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.interactions_positive_by_resource"]], "interactions_signed_by_data_model() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.interactions_signed_by_data_model"]], "interactions_signed_by_interaction_type() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.interactions_signed_by_interaction_type"]], "interactions_signed_by_interaction_type_and_data_model() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.interactions_signed_by_interaction_type_and_data_model"]], "interactions_signed_by_interaction_type_and_data_model_and_resource() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.interactions_signed_by_interaction_type_and_data_model_and_resource"]], "interactions_signed_by_reference() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.interactions_signed_by_reference"]], "interactions_signed_by_resource() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.interactions_signed_by_resource"]], "interactions_undirected_0_by_data_model() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.interactions_undirected_0_by_data_model"]], "interactions_undirected_0_by_interaction_type() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.interactions_undirected_0_by_interaction_type"]], "interactions_undirected_0_by_interaction_type_and_data_model() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.interactions_undirected_0_by_interaction_type_and_data_model"]], "interactions_undirected_0_by_interaction_type_and_data_model_and_resource() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.interactions_undirected_0_by_interaction_type_and_data_model_and_resource"]], "interactions_undirected_0_by_reference() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.interactions_undirected_0_by_reference"]], "interactions_undirected_0_by_resource() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.interactions_undirected_0_by_resource"]], "interactions_undirected_by_data_model() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.interactions_undirected_by_data_model"]], "interactions_undirected_by_interaction_type() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.interactions_undirected_by_interaction_type"]], "interactions_undirected_by_interaction_type_and_data_model() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.interactions_undirected_by_interaction_type_and_data_model"]], "interactions_undirected_by_interaction_type_and_data_model_and_resource() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.interactions_undirected_by_interaction_type_and_data_model_and_resource"]], "interactions_undirected_by_reference() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.interactions_undirected_by_reference"]], "interactions_undirected_by_resource() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.interactions_undirected_by_resource"]], "is_directed() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.is_directed"]], "is_directed_by_resources() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.is_directed_by_resources"]], "is_inhibition() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.is_inhibition"]], "is_loop() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.is_loop"]], "is_mutual() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.is_mutual"]], "is_mutual_by_resources() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.is_mutual_by_resources"]], "is_stimulation() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.is_stimulation"]], "iter_evidences() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.iter_evidences"]], "iter_match_evidences() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.iter_match_evidences"]], "labels_by_data_model() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.labels_by_data_model"]], "labels_by_interaction_type() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.labels_by_interaction_type"]], "labels_by_interaction_type_and_data_model() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.labels_by_interaction_type_and_data_model"]], "labels_by_interaction_type_and_data_model_and_resource() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.labels_by_interaction_type_and_data_model_and_resource"]], "labels_by_reference() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.labels_by_reference"]], "labels_by_resource() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.labels_by_resource"]], "lncrna_identifiers_by_data_model() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.lncrna_identifiers_by_data_model"]], "lncrna_identifiers_by_interaction_type() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.lncrna_identifiers_by_interaction_type"]], "lncrna_identifiers_by_interaction_type_and_data_model() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.lncrna_identifiers_by_interaction_type_and_data_model"]], "lncrna_identifiers_by_interaction_type_and_data_model_and_resource() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.lncrna_identifiers_by_interaction_type_and_data_model_and_resource"]], "lncrna_identifiers_by_reference() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.lncrna_identifiers_by_reference"]], "lncrna_identifiers_by_resource() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.lncrna_identifiers_by_resource"]], "lncrna_labels_by_data_model() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.lncrna_labels_by_data_model"]], "lncrna_labels_by_interaction_type() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.lncrna_labels_by_interaction_type"]], "lncrna_labels_by_interaction_type_and_data_model() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.lncrna_labels_by_interaction_type_and_data_model"]], "lncrna_labels_by_interaction_type_and_data_model_and_resource() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.lncrna_labels_by_interaction_type_and_data_model_and_resource"]], "lncrna_labels_by_reference() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.lncrna_labels_by_reference"]], "lncrna_labels_by_resource() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.lncrna_labels_by_resource"]], "lncrnas_by_data_model() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.lncrnas_by_data_model"]], "lncrnas_by_interaction_type() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.lncrnas_by_interaction_type"]], "lncrnas_by_interaction_type_and_data_model() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.lncrnas_by_interaction_type_and_data_model"]], "lncrnas_by_interaction_type_and_data_model_and_resource() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.lncrnas_by_interaction_type_and_data_model_and_resource"]], "lncrnas_by_reference() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.lncrnas_by_reference"]], "lncrnas_by_resource() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.lncrnas_by_resource"]], "majority_dir() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.majority_dir"]], "majority_sign() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.majority_sign"]], "merge() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.merge"]], "mirna_identifiers_by_data_model() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.mirna_identifiers_by_data_model"]], "mirna_identifiers_by_interaction_type() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.mirna_identifiers_by_interaction_type"]], "mirna_identifiers_by_interaction_type_and_data_model() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.mirna_identifiers_by_interaction_type_and_data_model"]], "mirna_identifiers_by_interaction_type_and_data_model_and_resource() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.mirna_identifiers_by_interaction_type_and_data_model_and_resource"]], "mirna_identifiers_by_reference() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.mirna_identifiers_by_reference"]], "mirna_identifiers_by_resource() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.mirna_identifiers_by_resource"]], "mirna_labels_by_data_model() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.mirna_labels_by_data_model"]], "mirna_labels_by_interaction_type() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.mirna_labels_by_interaction_type"]], "mirna_labels_by_interaction_type_and_data_model() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.mirna_labels_by_interaction_type_and_data_model"]], "mirna_labels_by_interaction_type_and_data_model_and_resource() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.mirna_labels_by_interaction_type_and_data_model_and_resource"]], "mirna_labels_by_reference() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.mirna_labels_by_reference"]], "mirna_labels_by_resource() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.mirna_labels_by_resource"]], "mirnas_by_data_model() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.mirnas_by_data_model"]], "mirnas_by_interaction_type() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.mirnas_by_interaction_type"]], "mirnas_by_interaction_type_and_data_model() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.mirnas_by_interaction_type_and_data_model"]], "mirnas_by_interaction_type_and_data_model_and_resource() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.mirnas_by_interaction_type_and_data_model_and_resource"]], "mirnas_by_reference() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.mirnas_by_reference"]], "mirnas_by_resource() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.mirnas_by_resource"]], "negative_a_b() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.negative_a_b"]], "negative_b_a() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.negative_b_a"]], "negative_resources_a_b() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.negative_resources_a_b"]], "negative_resources_b_a() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.negative_resources_b_a"]], "negative_reverse() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.negative_reverse"]], "negative_straight() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.negative_straight"]], "positive_a_b() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.positive_a_b"]], "positive_b_a() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.positive_b_a"]], "positive_resources_a_b() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.positive_resources_a_b"]], "positive_resources_b_a() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.positive_resources_b_a"]], "positive_reverse() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.positive_reverse"]], "positive_straight() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.positive_straight"]], "protein_identifiers_by_data_model() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.protein_identifiers_by_data_model"]], "protein_identifiers_by_interaction_type() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.protein_identifiers_by_interaction_type"]], "protein_identifiers_by_interaction_type_and_data_model() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.protein_identifiers_by_interaction_type_and_data_model"]], "protein_identifiers_by_interaction_type_and_data_model_and_resource() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.protein_identifiers_by_interaction_type_and_data_model_and_resource"]], "protein_identifiers_by_reference() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.protein_identifiers_by_reference"]], "protein_identifiers_by_resource() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.protein_identifiers_by_resource"]], "protein_labels_by_data_model() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.protein_labels_by_data_model"]], "protein_labels_by_interaction_type() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.protein_labels_by_interaction_type"]], "protein_labels_by_interaction_type_and_data_model() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.protein_labels_by_interaction_type_and_data_model"]], "protein_labels_by_interaction_type_and_data_model_and_resource() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.protein_labels_by_interaction_type_and_data_model_and_resource"]], "protein_labels_by_reference() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.protein_labels_by_reference"]], "protein_labels_by_resource() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.protein_labels_by_resource"]], "proteins_by_data_model() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.proteins_by_data_model"]], "proteins_by_interaction_type() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.proteins_by_interaction_type"]], "proteins_by_interaction_type_and_data_model() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.proteins_by_interaction_type_and_data_model"]], "proteins_by_interaction_type_and_data_model_and_resource() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.proteins_by_interaction_type_and_data_model_and_resource"]], "proteins_by_reference() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.proteins_by_reference"]], "proteins_by_resource() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.proteins_by_resource"]], "references_by_data_model (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.references_by_data_model"]], "references_by_interaction_type (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.references_by_interaction_type"]], "references_by_interaction_type_and_data_model (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.references_by_interaction_type_and_data_model"]], "references_by_interaction_type_and_data_model_and_resource (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.references_by_interaction_type_and_data_model_and_resource"]], "references_by_reference (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.references_by_reference"]], "references_by_resource (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.references_by_resource"]], "reload() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.reload"]], "resource_names_by_data_model (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.resource_names_by_data_model"]], "resource_names_by_interaction_type (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.resource_names_by_interaction_type"]], "resource_names_by_interaction_type_and_data_model (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.resource_names_by_interaction_type_and_data_model"]], "resource_names_by_interaction_type_and_data_model_and_resource (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.resource_names_by_interaction_type_and_data_model_and_resource"]], "resource_names_by_reference (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.resource_names_by_reference"]], "resource_names_by_resource (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.resource_names_by_resource"]], "resource_names_via_by_data_model (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.resource_names_via_by_data_model"]], "resource_names_via_by_interaction_type (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.resource_names_via_by_interaction_type"]], "resource_names_via_by_interaction_type_and_data_model (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.resource_names_via_by_interaction_type_and_data_model"]], "resource_names_via_by_interaction_type_and_data_model_and_resource (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.resource_names_via_by_interaction_type_and_data_model_and_resource"]], "resource_names_via_by_reference (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.resource_names_via_by_reference"]], "resource_names_via_by_resource (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.resource_names_via_by_resource"]], "resources_a_b() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.resources_a_b"]], "resources_b_a() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.resources_b_a"]], "resources_by_data_model (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.resources_by_data_model"]], "resources_by_interaction_type (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.resources_by_interaction_type"]], "resources_by_interaction_type_and_data_model (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.resources_by_interaction_type_and_data_model"]], "resources_by_interaction_type_and_data_model_and_resource (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.resources_by_interaction_type_and_data_model_and_resource"]], "resources_by_reference (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.resources_by_reference"]], "resources_by_resource (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.resources_by_resource"]], "resources_undirected() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.resources_undirected"]], "resources_via_by_data_model (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.resources_via_by_data_model"]], "resources_via_by_interaction_type (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.resources_via_by_interaction_type"]], "resources_via_by_interaction_type_and_data_model (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.resources_via_by_interaction_type_and_data_model"]], "resources_via_by_interaction_type_and_data_model_and_resource (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.resources_via_by_interaction_type_and_data_model_and_resource"]], "resources_via_by_reference (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.resources_via_by_reference"]], "resources_via_by_resource (pypath.core.interaction.interaction attribute)": [[42, "pypath.core.interaction.Interaction.resources_via_by_resource"]], "serialize() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.serialize"]], "serialize_attrs() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.serialize_attrs"]], "serialize_evidences() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.serialize_evidences"]], "small_molecule_identifiers_by_data_model() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.small_molecule_identifiers_by_data_model"]], "small_molecule_identifiers_by_interaction_type() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.small_molecule_identifiers_by_interaction_type"]], "small_molecule_identifiers_by_interaction_type_and_data_model() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.small_molecule_identifiers_by_interaction_type_and_data_model"]], "small_molecule_identifiers_by_interaction_type_and_data_model_and_resource() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.small_molecule_identifiers_by_interaction_type_and_data_model_and_resource"]], "small_molecule_identifiers_by_reference() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.small_molecule_identifiers_by_reference"]], "small_molecule_identifiers_by_resource() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.small_molecule_identifiers_by_resource"]], "small_molecule_labels_by_data_model() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.small_molecule_labels_by_data_model"]], "small_molecule_labels_by_interaction_type() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.small_molecule_labels_by_interaction_type"]], "small_molecule_labels_by_interaction_type_and_data_model() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.small_molecule_labels_by_interaction_type_and_data_model"]], "small_molecule_labels_by_interaction_type_and_data_model_and_resource() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.small_molecule_labels_by_interaction_type_and_data_model_and_resource"]], "small_molecule_labels_by_reference() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.small_molecule_labels_by_reference"]], "small_molecule_labels_by_resource() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.small_molecule_labels_by_resource"]], "small_molecules_by_data_model() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.small_molecules_by_data_model"]], "small_molecules_by_interaction_type() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.small_molecules_by_interaction_type"]], "small_molecules_by_interaction_type_and_data_model() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.small_molecules_by_interaction_type_and_data_model"]], "small_molecules_by_interaction_type_and_data_model_and_resource() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.small_molecules_by_interaction_type_and_data_model_and_resource"]], "small_molecules_by_reference() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.small_molecules_by_reference"]], "small_molecules_by_resource() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.small_molecules_by_resource"]], "source() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.source"]], "sources_reverse() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.sources_reverse"]], "sources_straight() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.sources_straight"]], "sources_undirected() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.sources_undirected"]], "src() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.src"]], "src_by_resource() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.src_by_resource"]], "target() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.target"]], "tgt() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.tgt"]], "tgt_by_resource() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.tgt_by_resource"]], "translate() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.translate"]], "unset_dir() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.unset_dir"]], "unset_direction() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.unset_direction"]], "unset_interaction_type() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.unset_interaction_type"]], "unset_sign() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.unset_sign"]], "update_attrs() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.update_attrs"]], "which_directions() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.which_directions"]], "which_dirs() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.which_dirs"]], "which_signs() (pypath.core.interaction.interaction method)": [[42, "pypath.core.interaction.Interaction.which_signs"]], "interactiondataframerecord (class in pypath.core.interaction)": [[43, "pypath.core.interaction.InteractionDataFrameRecord"]], "__init__() (pypath.core.interaction.interactiondataframerecord method)": [[43, "pypath.core.interaction.InteractionDataFrameRecord.__init__"]], "count() (pypath.core.interaction.interactiondataframerecord method)": [[43, "pypath.core.interaction.InteractionDataFrameRecord.count"]], "directed (pypath.core.interaction.interactiondataframerecord attribute)": [[43, "pypath.core.interaction.InteractionDataFrameRecord.directed"]], "dmodel (pypath.core.interaction.interactiondataframerecord attribute)": [[43, "pypath.core.interaction.InteractionDataFrameRecord.dmodel"]], "effect (pypath.core.interaction.interactiondataframerecord attribute)": [[43, "pypath.core.interaction.InteractionDataFrameRecord.effect"]], "id_a (pypath.core.interaction.interactiondataframerecord attribute)": [[43, "pypath.core.interaction.InteractionDataFrameRecord.id_a"]], "id_b (pypath.core.interaction.interactiondataframerecord attribute)": [[43, "pypath.core.interaction.InteractionDataFrameRecord.id_b"]], "index() (pypath.core.interaction.interactiondataframerecord method)": [[43, "pypath.core.interaction.InteractionDataFrameRecord.index"]], "references (pypath.core.interaction.interactiondataframerecord attribute)": [[43, "pypath.core.interaction.InteractionDataFrameRecord.references"]], "sources (pypath.core.interaction.interactiondataframerecord attribute)": [[43, "pypath.core.interaction.InteractionDataFrameRecord.sources"]], "type (pypath.core.interaction.interactiondataframerecord attribute)": [[43, "pypath.core.interaction.InteractionDataFrameRecord.type"]], "type_a (pypath.core.interaction.interactiondataframerecord attribute)": [[43, "pypath.core.interaction.InteractionDataFrameRecord.type_a"]], "type_b (pypath.core.interaction.interactiondataframerecord attribute)": [[43, "pypath.core.interaction.InteractionDataFrameRecord.type_b"]], "interactionkey (class in pypath.core.interaction)": [[44, "pypath.core.interaction.InteractionKey"]], "__init__() (pypath.core.interaction.interactionkey method)": [[44, "pypath.core.interaction.InteractionKey.__init__"]], "count() (pypath.core.interaction.interactionkey method)": [[44, "pypath.core.interaction.InteractionKey.count"]], "entity_a (pypath.core.interaction.interactionkey attribute)": [[44, "pypath.core.interaction.InteractionKey.entity_a"]], "entity_b (pypath.core.interaction.interactionkey attribute)": [[44, "pypath.core.interaction.InteractionKey.entity_b"]], "index() (pypath.core.interaction.interactionkey method)": [[44, "pypath.core.interaction.InteractionKey.index"]], "pypath.core.intercell_annot": [[45, "module-pypath.core.intercell_annot"]], "excludes (in module pypath.core.intercell_annot)": [[46, "pypath.core.intercell_annot.excludes"]], "pypath.core.network": [[47, "module-pypath.core.network"]], "network (class in pypath.core.network)": [[48, "pypath.core.network.Network"]], "__init__() (pypath.core.network.network method)": [[48, "pypath.core.network.Network.__init__"]], "activated_by (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.activated_by"]], "activates (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.activates"]], "add_interaction() (pypath.core.network.network method)": [[48, "pypath.core.network.Network.add_interaction"]], "add_node() (pypath.core.network.network method)": [[48, "pypath.core.network.Network.add_node"]], "collect_complex_identifiers (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.collect_complex_identifiers"]], "collect_complex_labels (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.collect_complex_labels"]], "collect_complexes (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.collect_complexes"]], "collect_curation_effort (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.collect_curation_effort"]], "collect_data_models (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.collect_data_models"]], "collect_datasets (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.collect_datasets"]], "collect_degrees_directed (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.collect_degrees_directed"]], "collect_degrees_directed_in (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.collect_degrees_directed_in"]], "collect_degrees_directed_out (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.collect_degrees_directed_out"]], "collect_degrees_negative (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.collect_degrees_negative"]], "collect_degrees_negative_in (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.collect_degrees_negative_in"]], "collect_degrees_negative_out (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.collect_degrees_negative_out"]], "collect_degrees_non_directed (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.collect_degrees_non_directed"]], "collect_degrees_positive (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.collect_degrees_positive"]], "collect_degrees_positive_in (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.collect_degrees_positive_in"]], "collect_degrees_positive_out (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.collect_degrees_positive_out"]], "collect_degrees_signed (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.collect_degrees_signed"]], "collect_degrees_signed_in (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.collect_degrees_signed_in"]], "collect_degrees_signed_out (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.collect_degrees_signed_out"]], "collect_degrees_undirected (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.collect_degrees_undirected"]], "collect_entities (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.collect_entities"]], "collect_evidences (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.collect_evidences"]], "collect_identifiers (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.collect_identifiers"]], "collect_interaction_types (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.collect_interaction_types"]], "collect_interactions (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.collect_interactions"]], "collect_interactions_0 (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.collect_interactions_0"]], "collect_interactions_directed (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.collect_interactions_directed"]], "collect_interactions_mutual (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.collect_interactions_mutual"]], "collect_interactions_negative (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.collect_interactions_negative"]], "collect_interactions_non_directed (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.collect_interactions_non_directed"]], "collect_interactions_non_directed_0 (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.collect_interactions_non_directed_0"]], "collect_interactions_positive (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.collect_interactions_positive"]], "collect_interactions_signed (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.collect_interactions_signed"]], "collect_interactions_undirected (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.collect_interactions_undirected"]], "collect_interactions_undirected_0 (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.collect_interactions_undirected_0"]], "collect_labels (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.collect_labels"]], "collect_lncrna_identifiers (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.collect_lncrna_identifiers"]], "collect_lncrna_labels (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.collect_lncrna_labels"]], "collect_lncrnas (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.collect_lncrnas"]], "collect_mirna_identifiers (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.collect_mirna_identifiers"]], "collect_mirna_labels (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.collect_mirna_labels"]], "collect_mirnas (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.collect_mirnas"]], "collect_protein_identifiers (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.collect_protein_identifiers"]], "collect_protein_labels (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.collect_protein_labels"]], "collect_proteins (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.collect_proteins"]], "collect_references (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.collect_references"]], "collect_resource_names (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.collect_resource_names"]], "collect_resource_names_via (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.collect_resource_names_via"]], "collect_resources (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.collect_resources"]], "collect_resources_via (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.collect_resources_via"]], "collect_small_molecule_identifiers (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.collect_small_molecule_identifiers"]], "collect_small_molecule_labels (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.collect_small_molecule_labels"]], "collect_small_molecules (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.collect_small_molecules"]], "collectri() (pypath.core.network.network class method)": [[48, "pypath.core.network.Network.collectri"]], "complex_identifiers_by_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.complex_identifiers_by_data_model"]], "complex_identifiers_by_interaction_type (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.complex_identifiers_by_interaction_type"]], "complex_identifiers_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.complex_identifiers_by_interaction_type_and_data_model"]], "complex_identifiers_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.complex_identifiers_by_interaction_type_and_data_model_and_resource"]], "complex_identifiers_by_reference (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.complex_identifiers_by_reference"]], "complex_identifiers_by_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.complex_identifiers_by_resource"]], "complex_labels_by_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.complex_labels_by_data_model"]], "complex_labels_by_interaction_type (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.complex_labels_by_interaction_type"]], "complex_labels_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.complex_labels_by_interaction_type_and_data_model"]], "complex_labels_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.complex_labels_by_interaction_type_and_data_model_and_resource"]], "complex_labels_by_reference (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.complex_labels_by_reference"]], "complex_labels_by_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.complex_labels_by_resource"]], "complexes_by_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.complexes_by_data_model"]], "complexes_by_interaction_type (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.complexes_by_interaction_type"]], "complexes_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.complexes_by_interaction_type_and_data_model"]], "complexes_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.complexes_by_interaction_type_and_data_model_and_resource"]], "complexes_by_reference (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.complexes_by_reference"]], "complexes_by_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.complexes_by_resource"]], "count_activated_by (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_activated_by"]], "count_activates (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_activates"]], "count_complex_identifiers (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_complex_identifiers"]], "count_complex_identifiers_by_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_complex_identifiers_by_data_model"]], "count_complex_identifiers_by_interaction_type (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_complex_identifiers_by_interaction_type"]], "count_complex_identifiers_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_complex_identifiers_by_interaction_type_and_data_model"]], "count_complex_identifiers_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_complex_identifiers_by_interaction_type_and_data_model_and_resource"]], "count_complex_identifiers_by_reference (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_complex_identifiers_by_reference"]], "count_complex_identifiers_by_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_complex_identifiers_by_resource"]], "count_complex_labels (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_complex_labels"]], "count_complex_labels_by_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_complex_labels_by_data_model"]], "count_complex_labels_by_interaction_type (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_complex_labels_by_interaction_type"]], "count_complex_labels_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_complex_labels_by_interaction_type_and_data_model"]], "count_complex_labels_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_complex_labels_by_interaction_type_and_data_model_and_resource"]], "count_complex_labels_by_reference (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_complex_labels_by_reference"]], "count_complex_labels_by_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_complex_labels_by_resource"]], "count_complexes (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_complexes"]], "count_complexes_by_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_complexes_by_data_model"]], "count_complexes_by_interaction_type (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_complexes_by_interaction_type"]], "count_complexes_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_complexes_by_interaction_type_and_data_model"]], "count_complexes_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_complexes_by_interaction_type_and_data_model_and_resource"]], "count_complexes_by_reference (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_complexes_by_reference"]], "count_complexes_by_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_complexes_by_resource"]], "count_curation_effort (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_curation_effort"]], "count_curation_effort_by_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_curation_effort_by_data_model"]], "count_curation_effort_by_interaction_type (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_curation_effort_by_interaction_type"]], "count_curation_effort_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_curation_effort_by_interaction_type_and_data_model"]], "count_curation_effort_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_curation_effort_by_interaction_type_and_data_model_and_resource"]], "count_curation_effort_by_reference (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_curation_effort_by_reference"]], "count_curation_effort_by_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_curation_effort_by_resource"]], "count_data_models (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_data_models"]], "count_data_models_by_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_data_models_by_data_model"]], "count_data_models_by_interaction_type (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_data_models_by_interaction_type"]], "count_data_models_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_data_models_by_interaction_type_and_data_model"]], "count_data_models_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_data_models_by_interaction_type_and_data_model_and_resource"]], "count_data_models_by_reference (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_data_models_by_reference"]], "count_data_models_by_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_data_models_by_resource"]], "count_datasets (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_datasets"]], "count_datasets_by_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_datasets_by_data_model"]], "count_datasets_by_interaction_type (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_datasets_by_interaction_type"]], "count_datasets_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_datasets_by_interaction_type_and_data_model"]], "count_datasets_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_datasets_by_interaction_type_and_data_model_and_resource"]], "count_datasets_by_reference (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_datasets_by_reference"]], "count_datasets_by_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_datasets_by_resource"]], "count_degrees_directed (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_degrees_directed"]], "count_degrees_directed_by_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_degrees_directed_by_data_model"]], "count_degrees_directed_by_interaction_type (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_degrees_directed_by_interaction_type"]], "count_degrees_directed_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_degrees_directed_by_interaction_type_and_data_model"]], "count_degrees_directed_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_degrees_directed_by_interaction_type_and_data_model_and_resource"]], "count_degrees_directed_by_reference (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_degrees_directed_by_reference"]], "count_degrees_directed_by_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_degrees_directed_by_resource"]], "count_degrees_directed_in (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_degrees_directed_in"]], "count_degrees_directed_in_by_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_degrees_directed_in_by_data_model"]], "count_degrees_directed_in_by_interaction_type (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_degrees_directed_in_by_interaction_type"]], "count_degrees_directed_in_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_degrees_directed_in_by_interaction_type_and_data_model"]], "count_degrees_directed_in_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_degrees_directed_in_by_interaction_type_and_data_model_and_resource"]], "count_degrees_directed_in_by_reference (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_degrees_directed_in_by_reference"]], "count_degrees_directed_in_by_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_degrees_directed_in_by_resource"]], "count_degrees_directed_out (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_degrees_directed_out"]], "count_degrees_directed_out_by_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_degrees_directed_out_by_data_model"]], "count_degrees_directed_out_by_interaction_type (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_degrees_directed_out_by_interaction_type"]], "count_degrees_directed_out_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_degrees_directed_out_by_interaction_type_and_data_model"]], "count_degrees_directed_out_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_degrees_directed_out_by_interaction_type_and_data_model_and_resource"]], "count_degrees_directed_out_by_reference (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_degrees_directed_out_by_reference"]], "count_degrees_directed_out_by_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_degrees_directed_out_by_resource"]], "count_degrees_negative (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_degrees_negative"]], "count_degrees_negative_by_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_degrees_negative_by_data_model"]], "count_degrees_negative_by_interaction_type (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_degrees_negative_by_interaction_type"]], "count_degrees_negative_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_degrees_negative_by_interaction_type_and_data_model"]], "count_degrees_negative_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_degrees_negative_by_interaction_type_and_data_model_and_resource"]], "count_degrees_negative_by_reference (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_degrees_negative_by_reference"]], "count_degrees_negative_by_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_degrees_negative_by_resource"]], "count_degrees_negative_in (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_degrees_negative_in"]], "count_degrees_negative_in_by_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_degrees_negative_in_by_data_model"]], "count_degrees_negative_in_by_interaction_type (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_degrees_negative_in_by_interaction_type"]], "count_degrees_negative_in_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_degrees_negative_in_by_interaction_type_and_data_model"]], "count_degrees_negative_in_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_degrees_negative_in_by_interaction_type_and_data_model_and_resource"]], "count_degrees_negative_in_by_reference (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_degrees_negative_in_by_reference"]], "count_degrees_negative_in_by_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_degrees_negative_in_by_resource"]], "count_degrees_negative_out (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_degrees_negative_out"]], "count_degrees_negative_out_by_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_degrees_negative_out_by_data_model"]], "count_degrees_negative_out_by_interaction_type (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_degrees_negative_out_by_interaction_type"]], "count_degrees_negative_out_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_degrees_negative_out_by_interaction_type_and_data_model"]], "count_degrees_negative_out_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_degrees_negative_out_by_interaction_type_and_data_model_and_resource"]], "count_degrees_negative_out_by_reference (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_degrees_negative_out_by_reference"]], "count_degrees_negative_out_by_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_degrees_negative_out_by_resource"]], "count_degrees_non_directed (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_degrees_non_directed"]], "count_degrees_non_directed_by_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_degrees_non_directed_by_data_model"]], "count_degrees_non_directed_by_interaction_type (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_degrees_non_directed_by_interaction_type"]], "count_degrees_non_directed_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_degrees_non_directed_by_interaction_type_and_data_model"]], "count_degrees_non_directed_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_degrees_non_directed_by_interaction_type_and_data_model_and_resource"]], "count_degrees_non_directed_by_reference (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_degrees_non_directed_by_reference"]], "count_degrees_non_directed_by_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_degrees_non_directed_by_resource"]], "count_degrees_positive (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_degrees_positive"]], "count_degrees_positive_by_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_degrees_positive_by_data_model"]], "count_degrees_positive_by_interaction_type (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_degrees_positive_by_interaction_type"]], "count_degrees_positive_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_degrees_positive_by_interaction_type_and_data_model"]], "count_degrees_positive_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_degrees_positive_by_interaction_type_and_data_model_and_resource"]], "count_degrees_positive_by_reference (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_degrees_positive_by_reference"]], "count_degrees_positive_by_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_degrees_positive_by_resource"]], "count_degrees_positive_in (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_degrees_positive_in"]], "count_degrees_positive_in_by_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_degrees_positive_in_by_data_model"]], "count_degrees_positive_in_by_interaction_type (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_degrees_positive_in_by_interaction_type"]], "count_degrees_positive_in_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_degrees_positive_in_by_interaction_type_and_data_model"]], "count_degrees_positive_in_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_degrees_positive_in_by_interaction_type_and_data_model_and_resource"]], "count_degrees_positive_in_by_reference (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_degrees_positive_in_by_reference"]], "count_degrees_positive_in_by_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_degrees_positive_in_by_resource"]], "count_degrees_positive_out (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_degrees_positive_out"]], "count_degrees_positive_out_by_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_degrees_positive_out_by_data_model"]], "count_degrees_positive_out_by_interaction_type (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_degrees_positive_out_by_interaction_type"]], "count_degrees_positive_out_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_degrees_positive_out_by_interaction_type_and_data_model"]], "count_degrees_positive_out_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_degrees_positive_out_by_interaction_type_and_data_model_and_resource"]], "count_degrees_positive_out_by_reference (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_degrees_positive_out_by_reference"]], "count_degrees_positive_out_by_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_degrees_positive_out_by_resource"]], "count_degrees_signed (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_degrees_signed"]], "count_degrees_signed_by_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_degrees_signed_by_data_model"]], "count_degrees_signed_by_interaction_type (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_degrees_signed_by_interaction_type"]], "count_degrees_signed_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_degrees_signed_by_interaction_type_and_data_model"]], "count_degrees_signed_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_degrees_signed_by_interaction_type_and_data_model_and_resource"]], "count_degrees_signed_by_reference (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_degrees_signed_by_reference"]], "count_degrees_signed_by_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_degrees_signed_by_resource"]], "count_degrees_signed_in (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_degrees_signed_in"]], "count_degrees_signed_in_by_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_degrees_signed_in_by_data_model"]], "count_degrees_signed_in_by_interaction_type (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_degrees_signed_in_by_interaction_type"]], "count_degrees_signed_in_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_degrees_signed_in_by_interaction_type_and_data_model"]], "count_degrees_signed_in_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_degrees_signed_in_by_interaction_type_and_data_model_and_resource"]], "count_degrees_signed_in_by_reference (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_degrees_signed_in_by_reference"]], "count_degrees_signed_in_by_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_degrees_signed_in_by_resource"]], "count_degrees_signed_out (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_degrees_signed_out"]], "count_degrees_signed_out_by_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_degrees_signed_out_by_data_model"]], "count_degrees_signed_out_by_interaction_type (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_degrees_signed_out_by_interaction_type"]], "count_degrees_signed_out_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_degrees_signed_out_by_interaction_type_and_data_model"]], "count_degrees_signed_out_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_degrees_signed_out_by_interaction_type_and_data_model_and_resource"]], "count_degrees_signed_out_by_reference (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_degrees_signed_out_by_reference"]], "count_degrees_signed_out_by_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_degrees_signed_out_by_resource"]], "count_degrees_undirected (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_degrees_undirected"]], "count_degrees_undirected_by_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_degrees_undirected_by_data_model"]], "count_degrees_undirected_by_interaction_type (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_degrees_undirected_by_interaction_type"]], "count_degrees_undirected_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_degrees_undirected_by_interaction_type_and_data_model"]], "count_degrees_undirected_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_degrees_undirected_by_interaction_type_and_data_model_and_resource"]], "count_degrees_undirected_by_reference (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_degrees_undirected_by_reference"]], "count_degrees_undirected_by_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_degrees_undirected_by_resource"]], "count_entities (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_entities"]], "count_entities_by_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_entities_by_data_model"]], "count_entities_by_interaction_type (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_entities_by_interaction_type"]], "count_entities_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_entities_by_interaction_type_and_data_model"]], "count_entities_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_entities_by_interaction_type_and_data_model_and_resource"]], "count_entities_by_reference (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_entities_by_reference"]], "count_entities_by_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_entities_by_resource"]], "count_evidences (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_evidences"]], "count_evidences_by_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_evidences_by_data_model"]], "count_evidences_by_interaction_type (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_evidences_by_interaction_type"]], "count_evidences_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_evidences_by_interaction_type_and_data_model"]], "count_evidences_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_evidences_by_interaction_type_and_data_model_and_resource"]], "count_evidences_by_reference (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_evidences_by_reference"]], "count_evidences_by_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_evidences_by_resource"]], "count_identifiers (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_identifiers"]], "count_identifiers_by_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_identifiers_by_data_model"]], "count_identifiers_by_interaction_type (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_identifiers_by_interaction_type"]], "count_identifiers_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_identifiers_by_interaction_type_and_data_model"]], "count_identifiers_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_identifiers_by_interaction_type_and_data_model_and_resource"]], "count_identifiers_by_reference (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_identifiers_by_reference"]], "count_identifiers_by_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_identifiers_by_resource"]], "count_interaction_types (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_interaction_types"]], "count_interaction_types_by_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_interaction_types_by_data_model"]], "count_interaction_types_by_interaction_type (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_interaction_types_by_interaction_type"]], "count_interaction_types_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_interaction_types_by_interaction_type_and_data_model"]], "count_interaction_types_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_interaction_types_by_interaction_type_and_data_model_and_resource"]], "count_interaction_types_by_reference (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_interaction_types_by_reference"]], "count_interaction_types_by_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_interaction_types_by_resource"]], "count_interactions (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_interactions"]], "count_interactions_0 (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_interactions_0"]], "count_interactions_0_by_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_interactions_0_by_data_model"]], "count_interactions_0_by_interaction_type (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_interactions_0_by_interaction_type"]], "count_interactions_0_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_interactions_0_by_interaction_type_and_data_model"]], "count_interactions_0_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_interactions_0_by_interaction_type_and_data_model_and_resource"]], "count_interactions_0_by_reference (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_interactions_0_by_reference"]], "count_interactions_0_by_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_interactions_0_by_resource"]], "count_interactions_by_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_interactions_by_data_model"]], "count_interactions_by_interaction_type (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_interactions_by_interaction_type"]], "count_interactions_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_interactions_by_interaction_type_and_data_model"]], "count_interactions_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_interactions_by_interaction_type_and_data_model_and_resource"]], "count_interactions_by_reference (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_interactions_by_reference"]], "count_interactions_by_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_interactions_by_resource"]], "count_interactions_directed (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_interactions_directed"]], "count_interactions_directed_by_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_interactions_directed_by_data_model"]], "count_interactions_directed_by_interaction_type (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_interactions_directed_by_interaction_type"]], "count_interactions_directed_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_interactions_directed_by_interaction_type_and_data_model"]], "count_interactions_directed_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_interactions_directed_by_interaction_type_and_data_model_and_resource"]], "count_interactions_directed_by_reference (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_interactions_directed_by_reference"]], "count_interactions_directed_by_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_interactions_directed_by_resource"]], "count_interactions_mutual (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_interactions_mutual"]], "count_interactions_mutual_by_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_interactions_mutual_by_data_model"]], "count_interactions_mutual_by_interaction_type (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_interactions_mutual_by_interaction_type"]], "count_interactions_mutual_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_interactions_mutual_by_interaction_type_and_data_model"]], "count_interactions_mutual_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_interactions_mutual_by_interaction_type_and_data_model_and_resource"]], "count_interactions_mutual_by_reference (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_interactions_mutual_by_reference"]], "count_interactions_mutual_by_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_interactions_mutual_by_resource"]], "count_interactions_negative (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_interactions_negative"]], "count_interactions_negative_by_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_interactions_negative_by_data_model"]], "count_interactions_negative_by_interaction_type (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_interactions_negative_by_interaction_type"]], "count_interactions_negative_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_interactions_negative_by_interaction_type_and_data_model"]], "count_interactions_negative_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_interactions_negative_by_interaction_type_and_data_model_and_resource"]], "count_interactions_negative_by_reference (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_interactions_negative_by_reference"]], "count_interactions_negative_by_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_interactions_negative_by_resource"]], "count_interactions_non_directed (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_interactions_non_directed"]], "count_interactions_non_directed_0 (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_interactions_non_directed_0"]], "count_interactions_non_directed_0_by_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_interactions_non_directed_0_by_data_model"]], "count_interactions_non_directed_0_by_interaction_type (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_interactions_non_directed_0_by_interaction_type"]], "count_interactions_non_directed_0_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_interactions_non_directed_0_by_interaction_type_and_data_model"]], "count_interactions_non_directed_0_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_interactions_non_directed_0_by_interaction_type_and_data_model_and_resource"]], "count_interactions_non_directed_0_by_reference (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_interactions_non_directed_0_by_reference"]], "count_interactions_non_directed_0_by_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_interactions_non_directed_0_by_resource"]], "count_interactions_non_directed_by_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_interactions_non_directed_by_data_model"]], "count_interactions_non_directed_by_interaction_type (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_interactions_non_directed_by_interaction_type"]], "count_interactions_non_directed_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_interactions_non_directed_by_interaction_type_and_data_model"]], "count_interactions_non_directed_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_interactions_non_directed_by_interaction_type_and_data_model_and_resource"]], "count_interactions_non_directed_by_reference (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_interactions_non_directed_by_reference"]], "count_interactions_non_directed_by_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_interactions_non_directed_by_resource"]], "count_interactions_positive (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_interactions_positive"]], "count_interactions_positive_by_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_interactions_positive_by_data_model"]], "count_interactions_positive_by_interaction_type (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_interactions_positive_by_interaction_type"]], "count_interactions_positive_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_interactions_positive_by_interaction_type_and_data_model"]], "count_interactions_positive_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_interactions_positive_by_interaction_type_and_data_model_and_resource"]], "count_interactions_positive_by_reference (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_interactions_positive_by_reference"]], "count_interactions_positive_by_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_interactions_positive_by_resource"]], "count_interactions_signed (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_interactions_signed"]], "count_interactions_signed_by_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_interactions_signed_by_data_model"]], "count_interactions_signed_by_interaction_type (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_interactions_signed_by_interaction_type"]], "count_interactions_signed_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_interactions_signed_by_interaction_type_and_data_model"]], "count_interactions_signed_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_interactions_signed_by_interaction_type_and_data_model_and_resource"]], "count_interactions_signed_by_reference (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_interactions_signed_by_reference"]], "count_interactions_signed_by_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_interactions_signed_by_resource"]], "count_interactions_undirected (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_interactions_undirected"]], "count_interactions_undirected_0 (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_interactions_undirected_0"]], "count_interactions_undirected_0_by_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_interactions_undirected_0_by_data_model"]], "count_interactions_undirected_0_by_interaction_type (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_interactions_undirected_0_by_interaction_type"]], "count_interactions_undirected_0_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_interactions_undirected_0_by_interaction_type_and_data_model"]], "count_interactions_undirected_0_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_interactions_undirected_0_by_interaction_type_and_data_model_and_resource"]], "count_interactions_undirected_0_by_reference (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_interactions_undirected_0_by_reference"]], "count_interactions_undirected_0_by_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_interactions_undirected_0_by_resource"]], "count_interactions_undirected_by_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_interactions_undirected_by_data_model"]], "count_interactions_undirected_by_interaction_type (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_interactions_undirected_by_interaction_type"]], "count_interactions_undirected_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_interactions_undirected_by_interaction_type_and_data_model"]], "count_interactions_undirected_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_interactions_undirected_by_interaction_type_and_data_model_and_resource"]], "count_interactions_undirected_by_reference (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_interactions_undirected_by_reference"]], "count_interactions_undirected_by_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_interactions_undirected_by_resource"]], "count_labels (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_labels"]], "count_labels_by_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_labels_by_data_model"]], "count_labels_by_interaction_type (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_labels_by_interaction_type"]], "count_labels_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_labels_by_interaction_type_and_data_model"]], "count_labels_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_labels_by_interaction_type_and_data_model_and_resource"]], "count_labels_by_reference (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_labels_by_reference"]], "count_labels_by_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_labels_by_resource"]], "count_lncrna_identifiers (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_lncrna_identifiers"]], "count_lncrna_identifiers_by_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_lncrna_identifiers_by_data_model"]], "count_lncrna_identifiers_by_interaction_type (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_lncrna_identifiers_by_interaction_type"]], "count_lncrna_identifiers_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_lncrna_identifiers_by_interaction_type_and_data_model"]], "count_lncrna_identifiers_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_lncrna_identifiers_by_interaction_type_and_data_model_and_resource"]], "count_lncrna_identifiers_by_reference (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_lncrna_identifiers_by_reference"]], "count_lncrna_identifiers_by_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_lncrna_identifiers_by_resource"]], "count_lncrna_labels (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_lncrna_labels"]], "count_lncrna_labels_by_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_lncrna_labels_by_data_model"]], "count_lncrna_labels_by_interaction_type (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_lncrna_labels_by_interaction_type"]], "count_lncrna_labels_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_lncrna_labels_by_interaction_type_and_data_model"]], "count_lncrna_labels_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_lncrna_labels_by_interaction_type_and_data_model_and_resource"]], "count_lncrna_labels_by_reference (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_lncrna_labels_by_reference"]], "count_lncrna_labels_by_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_lncrna_labels_by_resource"]], "count_lncrnas (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_lncrnas"]], "count_lncrnas_by_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_lncrnas_by_data_model"]], "count_lncrnas_by_interaction_type (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_lncrnas_by_interaction_type"]], "count_lncrnas_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_lncrnas_by_interaction_type_and_data_model"]], "count_lncrnas_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_lncrnas_by_interaction_type_and_data_model_and_resource"]], "count_lncrnas_by_reference (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_lncrnas_by_reference"]], "count_lncrnas_by_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_lncrnas_by_resource"]], "count_mirna_identifiers (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_mirna_identifiers"]], "count_mirna_identifiers_by_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_mirna_identifiers_by_data_model"]], "count_mirna_identifiers_by_interaction_type (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_mirna_identifiers_by_interaction_type"]], "count_mirna_identifiers_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_mirna_identifiers_by_interaction_type_and_data_model"]], "count_mirna_identifiers_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_mirna_identifiers_by_interaction_type_and_data_model_and_resource"]], "count_mirna_identifiers_by_reference (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_mirna_identifiers_by_reference"]], "count_mirna_identifiers_by_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_mirna_identifiers_by_resource"]], "count_mirna_labels (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_mirna_labels"]], "count_mirna_labels_by_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_mirna_labels_by_data_model"]], "count_mirna_labels_by_interaction_type (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_mirna_labels_by_interaction_type"]], "count_mirna_labels_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_mirna_labels_by_interaction_type_and_data_model"]], "count_mirna_labels_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_mirna_labels_by_interaction_type_and_data_model_and_resource"]], "count_mirna_labels_by_reference (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_mirna_labels_by_reference"]], "count_mirna_labels_by_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_mirna_labels_by_resource"]], "count_mirnas (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_mirnas"]], "count_mirnas_by_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_mirnas_by_data_model"]], "count_mirnas_by_interaction_type (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_mirnas_by_interaction_type"]], "count_mirnas_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_mirnas_by_interaction_type_and_data_model"]], "count_mirnas_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_mirnas_by_interaction_type_and_data_model_and_resource"]], "count_mirnas_by_reference (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_mirnas_by_reference"]], "count_mirnas_by_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_mirnas_by_resource"]], "count_partners() (pypath.core.network.network method)": [[48, "pypath.core.network.Network.count_partners"]], "count_post_transcriptionally_activated_by (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_post_transcriptionally_activated_by"]], "count_post_transcriptionally_activates (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_post_transcriptionally_activates"]], "count_post_transcriptionally_regulated_by (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_post_transcriptionally_regulated_by"]], "count_post_transcriptionally_regulates (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_post_transcriptionally_regulates"]], "count_post_transcriptionally_suppressed_by (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_post_transcriptionally_suppressed_by"]], "count_post_transcriptionally_suppresses (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_post_transcriptionally_suppresses"]], "count_post_translationally_activated_by (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_post_translationally_activated_by"]], "count_post_translationally_activates (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_post_translationally_activates"]], "count_post_translationally_regulated_by (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_post_translationally_regulated_by"]], "count_post_translationally_regulates (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_post_translationally_regulates"]], "count_post_translationally_suppressed_by (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_post_translationally_suppressed_by"]], "count_post_translationally_suppresses (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_post_translationally_suppresses"]], "count_protein_identifiers (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_protein_identifiers"]], "count_protein_identifiers_by_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_protein_identifiers_by_data_model"]], "count_protein_identifiers_by_interaction_type (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_protein_identifiers_by_interaction_type"]], "count_protein_identifiers_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_protein_identifiers_by_interaction_type_and_data_model"]], "count_protein_identifiers_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_protein_identifiers_by_interaction_type_and_data_model_and_resource"]], "count_protein_identifiers_by_reference (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_protein_identifiers_by_reference"]], "count_protein_identifiers_by_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_protein_identifiers_by_resource"]], "count_protein_labels (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_protein_labels"]], "count_protein_labels_by_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_protein_labels_by_data_model"]], "count_protein_labels_by_interaction_type (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_protein_labels_by_interaction_type"]], "count_protein_labels_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_protein_labels_by_interaction_type_and_data_model"]], "count_protein_labels_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_protein_labels_by_interaction_type_and_data_model_and_resource"]], "count_protein_labels_by_reference (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_protein_labels_by_reference"]], "count_protein_labels_by_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_protein_labels_by_resource"]], "count_proteins (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_proteins"]], "count_proteins_by_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_proteins_by_data_model"]], "count_proteins_by_interaction_type (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_proteins_by_interaction_type"]], "count_proteins_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_proteins_by_interaction_type_and_data_model"]], "count_proteins_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_proteins_by_interaction_type_and_data_model_and_resource"]], "count_proteins_by_reference (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_proteins_by_reference"]], "count_proteins_by_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_proteins_by_resource"]], "count_references (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_references"]], "count_references_by_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_references_by_data_model"]], "count_references_by_interaction_type (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_references_by_interaction_type"]], "count_references_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_references_by_interaction_type_and_data_model"]], "count_references_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_references_by_interaction_type_and_data_model_and_resource"]], "count_references_by_reference (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_references_by_reference"]], "count_references_by_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_references_by_resource"]], "count_regulated_by (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_regulated_by"]], "count_regulates (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_regulates"]], "count_resource_names (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_resource_names"]], "count_resource_names_by_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_resource_names_by_data_model"]], "count_resource_names_by_interaction_type (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_resource_names_by_interaction_type"]], "count_resource_names_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_resource_names_by_interaction_type_and_data_model"]], "count_resource_names_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_resource_names_by_interaction_type_and_data_model_and_resource"]], "count_resource_names_by_reference (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_resource_names_by_reference"]], "count_resource_names_by_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_resource_names_by_resource"]], "count_resource_names_via (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_resource_names_via"]], "count_resource_names_via_by_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_resource_names_via_by_data_model"]], "count_resource_names_via_by_interaction_type (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_resource_names_via_by_interaction_type"]], "count_resource_names_via_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_resource_names_via_by_interaction_type_and_data_model"]], "count_resource_names_via_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_resource_names_via_by_interaction_type_and_data_model_and_resource"]], "count_resource_names_via_by_reference (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_resource_names_via_by_reference"]], "count_resource_names_via_by_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_resource_names_via_by_resource"]], "count_resources (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_resources"]], "count_resources_by_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_resources_by_data_model"]], "count_resources_by_interaction_type (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_resources_by_interaction_type"]], "count_resources_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_resources_by_interaction_type_and_data_model"]], "count_resources_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_resources_by_interaction_type_and_data_model_and_resource"]], "count_resources_by_reference (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_resources_by_reference"]], "count_resources_by_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_resources_by_resource"]], "count_resources_via (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_resources_via"]], "count_resources_via_by_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_resources_via_by_data_model"]], "count_resources_via_by_interaction_type (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_resources_via_by_interaction_type"]], "count_resources_via_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_resources_via_by_interaction_type_and_data_model"]], "count_resources_via_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_resources_via_by_interaction_type_and_data_model_and_resource"]], "count_resources_via_by_reference (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_resources_via_by_reference"]], "count_resources_via_by_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_resources_via_by_resource"]], "count_small_molecule_identifiers (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_small_molecule_identifiers"]], "count_small_molecule_identifiers_by_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_small_molecule_identifiers_by_data_model"]], "count_small_molecule_identifiers_by_interaction_type (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_small_molecule_identifiers_by_interaction_type"]], "count_small_molecule_identifiers_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_small_molecule_identifiers_by_interaction_type_and_data_model"]], "count_small_molecule_identifiers_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_small_molecule_identifiers_by_interaction_type_and_data_model_and_resource"]], "count_small_molecule_identifiers_by_reference (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_small_molecule_identifiers_by_reference"]], "count_small_molecule_identifiers_by_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_small_molecule_identifiers_by_resource"]], "count_small_molecule_labels (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_small_molecule_labels"]], "count_small_molecule_labels_by_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_small_molecule_labels_by_data_model"]], "count_small_molecule_labels_by_interaction_type (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_small_molecule_labels_by_interaction_type"]], "count_small_molecule_labels_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_small_molecule_labels_by_interaction_type_and_data_model"]], "count_small_molecule_labels_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_small_molecule_labels_by_interaction_type_and_data_model_and_resource"]], "count_small_molecule_labels_by_reference (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_small_molecule_labels_by_reference"]], "count_small_molecule_labels_by_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_small_molecule_labels_by_resource"]], "count_small_molecules (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_small_molecules"]], "count_small_molecules_by_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_small_molecules_by_data_model"]], "count_small_molecules_by_interaction_type (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_small_molecules_by_interaction_type"]], "count_small_molecules_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_small_molecules_by_interaction_type_and_data_model"]], "count_small_molecules_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_small_molecules_by_interaction_type_and_data_model_and_resource"]], "count_small_molecules_by_reference (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_small_molecules_by_reference"]], "count_small_molecules_by_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_small_molecules_by_resource"]], "count_suppressed_by (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_suppressed_by"]], "count_suppresses (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_suppresses"]], "count_transcriptionally_activated_by (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_transcriptionally_activated_by"]], "count_transcriptionally_activates (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_transcriptionally_activates"]], "count_transcriptionally_regulated_by (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_transcriptionally_regulated_by"]], "count_transcriptionally_regulates (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_transcriptionally_regulates"]], "count_transcriptionally_suppressed_by (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_transcriptionally_suppressed_by"]], "count_transcriptionally_suppresses (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.count_transcriptionally_suppresses"]], "curation_effort_by_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.curation_effort_by_data_model"]], "curation_effort_by_interaction_type (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.curation_effort_by_interaction_type"]], "curation_effort_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.curation_effort_by_interaction_type_and_data_model"]], "curation_effort_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.curation_effort_by_interaction_type_and_data_model_and_resource"]], "curation_effort_by_reference (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.curation_effort_by_reference"]], "curation_effort_by_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.curation_effort_by_resource"]], "data_models_by_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.data_models_by_data_model"]], "data_models_by_interaction_type (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.data_models_by_interaction_type"]], "data_models_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.data_models_by_interaction_type_and_data_model"]], "data_models_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.data_models_by_interaction_type_and_data_model_and_resource"]], "data_models_by_reference (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.data_models_by_reference"]], "data_models_by_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.data_models_by_resource"]], "datasets_by_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.datasets_by_data_model"]], "datasets_by_interaction_type (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.datasets_by_interaction_type"]], "datasets_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.datasets_by_interaction_type_and_data_model"]], "datasets_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.datasets_by_interaction_type_and_data_model_and_resource"]], "datasets_by_reference (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.datasets_by_reference"]], "datasets_by_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.datasets_by_resource"]], "degrees_directed_by_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.degrees_directed_by_data_model"]], "degrees_directed_by_interaction_type (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.degrees_directed_by_interaction_type"]], "degrees_directed_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.degrees_directed_by_interaction_type_and_data_model"]], "degrees_directed_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.degrees_directed_by_interaction_type_and_data_model_and_resource"]], "degrees_directed_by_reference (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.degrees_directed_by_reference"]], "degrees_directed_by_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.degrees_directed_by_resource"]], "degrees_directed_in_by_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.degrees_directed_in_by_data_model"]], "degrees_directed_in_by_interaction_type (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.degrees_directed_in_by_interaction_type"]], "degrees_directed_in_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.degrees_directed_in_by_interaction_type_and_data_model"]], "degrees_directed_in_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.degrees_directed_in_by_interaction_type_and_data_model_and_resource"]], "degrees_directed_in_by_reference (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.degrees_directed_in_by_reference"]], "degrees_directed_in_by_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.degrees_directed_in_by_resource"]], "degrees_directed_out_by_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.degrees_directed_out_by_data_model"]], "degrees_directed_out_by_interaction_type (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.degrees_directed_out_by_interaction_type"]], "degrees_directed_out_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.degrees_directed_out_by_interaction_type_and_data_model"]], "degrees_directed_out_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.degrees_directed_out_by_interaction_type_and_data_model_and_resource"]], "degrees_directed_out_by_reference (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.degrees_directed_out_by_reference"]], "degrees_directed_out_by_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.degrees_directed_out_by_resource"]], "degrees_negative_by_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.degrees_negative_by_data_model"]], "degrees_negative_by_interaction_type (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.degrees_negative_by_interaction_type"]], "degrees_negative_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.degrees_negative_by_interaction_type_and_data_model"]], "degrees_negative_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.degrees_negative_by_interaction_type_and_data_model_and_resource"]], "degrees_negative_by_reference (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.degrees_negative_by_reference"]], "degrees_negative_by_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.degrees_negative_by_resource"]], "degrees_negative_in_by_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.degrees_negative_in_by_data_model"]], "degrees_negative_in_by_interaction_type (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.degrees_negative_in_by_interaction_type"]], "degrees_negative_in_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.degrees_negative_in_by_interaction_type_and_data_model"]], "degrees_negative_in_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.degrees_negative_in_by_interaction_type_and_data_model_and_resource"]], "degrees_negative_in_by_reference (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.degrees_negative_in_by_reference"]], "degrees_negative_in_by_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.degrees_negative_in_by_resource"]], "degrees_negative_out_by_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.degrees_negative_out_by_data_model"]], "degrees_negative_out_by_interaction_type (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.degrees_negative_out_by_interaction_type"]], "degrees_negative_out_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.degrees_negative_out_by_interaction_type_and_data_model"]], "degrees_negative_out_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.degrees_negative_out_by_interaction_type_and_data_model_and_resource"]], "degrees_negative_out_by_reference (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.degrees_negative_out_by_reference"]], "degrees_negative_out_by_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.degrees_negative_out_by_resource"]], "degrees_non_directed_by_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.degrees_non_directed_by_data_model"]], "degrees_non_directed_by_interaction_type (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.degrees_non_directed_by_interaction_type"]], "degrees_non_directed_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.degrees_non_directed_by_interaction_type_and_data_model"]], "degrees_non_directed_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.degrees_non_directed_by_interaction_type_and_data_model_and_resource"]], "degrees_non_directed_by_reference (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.degrees_non_directed_by_reference"]], "degrees_non_directed_by_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.degrees_non_directed_by_resource"]], "degrees_positive_by_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.degrees_positive_by_data_model"]], "degrees_positive_by_interaction_type (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.degrees_positive_by_interaction_type"]], "degrees_positive_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.degrees_positive_by_interaction_type_and_data_model"]], "degrees_positive_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.degrees_positive_by_interaction_type_and_data_model_and_resource"]], "degrees_positive_by_reference (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.degrees_positive_by_reference"]], "degrees_positive_by_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.degrees_positive_by_resource"]], "degrees_positive_in_by_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.degrees_positive_in_by_data_model"]], "degrees_positive_in_by_interaction_type (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.degrees_positive_in_by_interaction_type"]], "degrees_positive_in_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.degrees_positive_in_by_interaction_type_and_data_model"]], "degrees_positive_in_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.degrees_positive_in_by_interaction_type_and_data_model_and_resource"]], "degrees_positive_in_by_reference (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.degrees_positive_in_by_reference"]], "degrees_positive_in_by_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.degrees_positive_in_by_resource"]], "degrees_positive_out_by_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.degrees_positive_out_by_data_model"]], "degrees_positive_out_by_interaction_type (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.degrees_positive_out_by_interaction_type"]], "degrees_positive_out_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.degrees_positive_out_by_interaction_type_and_data_model"]], "degrees_positive_out_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.degrees_positive_out_by_interaction_type_and_data_model_and_resource"]], "degrees_positive_out_by_reference (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.degrees_positive_out_by_reference"]], "degrees_positive_out_by_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.degrees_positive_out_by_resource"]], "degrees_signed_by_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.degrees_signed_by_data_model"]], "degrees_signed_by_interaction_type (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.degrees_signed_by_interaction_type"]], "degrees_signed_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.degrees_signed_by_interaction_type_and_data_model"]], "degrees_signed_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.degrees_signed_by_interaction_type_and_data_model_and_resource"]], "degrees_signed_by_reference (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.degrees_signed_by_reference"]], "degrees_signed_by_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.degrees_signed_by_resource"]], "degrees_signed_in_by_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.degrees_signed_in_by_data_model"]], "degrees_signed_in_by_interaction_type (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.degrees_signed_in_by_interaction_type"]], "degrees_signed_in_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.degrees_signed_in_by_interaction_type_and_data_model"]], "degrees_signed_in_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.degrees_signed_in_by_interaction_type_and_data_model_and_resource"]], "degrees_signed_in_by_reference (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.degrees_signed_in_by_reference"]], "degrees_signed_in_by_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.degrees_signed_in_by_resource"]], "degrees_signed_out_by_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.degrees_signed_out_by_data_model"]], "degrees_signed_out_by_interaction_type (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.degrees_signed_out_by_interaction_type"]], "degrees_signed_out_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.degrees_signed_out_by_interaction_type_and_data_model"]], "degrees_signed_out_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.degrees_signed_out_by_interaction_type_and_data_model_and_resource"]], "degrees_signed_out_by_reference (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.degrees_signed_out_by_reference"]], "degrees_signed_out_by_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.degrees_signed_out_by_resource"]], "degrees_undirected_by_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.degrees_undirected_by_data_model"]], "degrees_undirected_by_interaction_type (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.degrees_undirected_by_interaction_type"]], "degrees_undirected_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.degrees_undirected_by_interaction_type_and_data_model"]], "degrees_undirected_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.degrees_undirected_by_interaction_type_and_data_model_and_resource"]], "degrees_undirected_by_reference (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.degrees_undirected_by_reference"]], "degrees_undirected_by_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.degrees_undirected_by_resource"]], "direction_consistency() (pypath.core.network.network method)": [[48, "pypath.core.network.Network.direction_consistency"]], "dorothea() (pypath.core.network.network class method)": [[48, "pypath.core.network.Network.dorothea"]], "entities_by_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.entities_by_data_model"]], "entities_by_interaction_type (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.entities_by_interaction_type"]], "entities_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.entities_by_interaction_type_and_data_model"]], "entities_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.entities_by_interaction_type_and_data_model_and_resource"]], "entities_by_reference (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.entities_by_reference"]], "entities_by_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.entities_by_resource"]], "entity_by_id() (pypath.core.network.network method)": [[48, "pypath.core.network.Network.entity_by_id"]], "entity_by_label() (pypath.core.network.network method)": [[48, "pypath.core.network.Network.entity_by_label"]], "evidences_by_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.evidences_by_data_model"]], "evidences_by_interaction_type (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.evidences_by_interaction_type"]], "evidences_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.evidences_by_interaction_type_and_data_model"]], "evidences_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.evidences_by_interaction_type_and_data_model_and_resource"]], "evidences_by_reference (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.evidences_by_reference"]], "evidences_by_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.evidences_by_resource"]], "extra_directions() (pypath.core.network.network method)": [[48, "pypath.core.network.Network.extra_directions"]], "find_paths() (pypath.core.network.network method)": [[48, "pypath.core.network.Network.find_paths"]], "from_igraph() (pypath.core.network.network class method)": [[48, "pypath.core.network.Network.from_igraph"]], "from_pickle() (pypath.core.network.network class method)": [[48, "pypath.core.network.Network.from_pickle"]], "get_complex_identifiers (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.get_complex_identifiers"]], "get_complex_labels (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.get_complex_labels"]], "get_complexes (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.get_complexes"]], "get_curation_effort (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.get_curation_effort"]], "get_data_models (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.get_data_models"]], "get_datasets (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.get_datasets"]], "get_degrees_directed (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.get_degrees_directed"]], "get_degrees_directed_in (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.get_degrees_directed_in"]], "get_degrees_directed_out (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.get_degrees_directed_out"]], "get_degrees_negative (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.get_degrees_negative"]], "get_degrees_negative_in (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.get_degrees_negative_in"]], "get_degrees_negative_out (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.get_degrees_negative_out"]], "get_degrees_non_directed (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.get_degrees_non_directed"]], "get_degrees_positive (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.get_degrees_positive"]], "get_degrees_positive_in (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.get_degrees_positive_in"]], "get_degrees_positive_out (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.get_degrees_positive_out"]], "get_degrees_signed (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.get_degrees_signed"]], "get_degrees_signed_in (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.get_degrees_signed_in"]], "get_degrees_signed_out (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.get_degrees_signed_out"]], "get_degrees_undirected (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.get_degrees_undirected"]], "get_entities (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.get_entities"]], "get_evidences (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.get_evidences"]], "get_identifiers (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.get_identifiers"]], "get_interaction_types (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.get_interaction_types"]], "get_interactions (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.get_interactions"]], "get_interactions_0 (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.get_interactions_0"]], "get_interactions_directed (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.get_interactions_directed"]], "get_interactions_mutual (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.get_interactions_mutual"]], "get_interactions_negative (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.get_interactions_negative"]], "get_interactions_non_directed (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.get_interactions_non_directed"]], "get_interactions_non_directed_0 (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.get_interactions_non_directed_0"]], "get_interactions_positive (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.get_interactions_positive"]], "get_interactions_signed (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.get_interactions_signed"]], "get_interactions_undirected (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.get_interactions_undirected"]], "get_interactions_undirected_0 (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.get_interactions_undirected_0"]], "get_labels (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.get_labels"]], "get_lncrna_identifiers (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.get_lncrna_identifiers"]], "get_lncrna_labels (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.get_lncrna_labels"]], "get_lncrnas (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.get_lncrnas"]], "get_mirna_identifiers (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.get_mirna_identifiers"]], "get_mirna_labels (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.get_mirna_labels"]], "get_mirnas (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.get_mirnas"]], "get_organisms() (pypath.core.network.network method)": [[48, "pypath.core.network.Network.get_organisms"]], "get_protein_identifiers (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.get_protein_identifiers"]], "get_protein_labels (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.get_protein_labels"]], "get_proteins (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.get_proteins"]], "get_references (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.get_references"]], "get_resource_names (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.get_resource_names"]], "get_resource_names_via (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.get_resource_names_via"]], "get_resources (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.get_resources"]], "get_resources_via (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.get_resources_via"]], "get_small_molecule_identifiers (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.get_small_molecule_identifiers"]], "get_small_molecule_labels (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.get_small_molecule_labels"]], "get_small_molecules (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.get_small_molecules"]], "htp_interactions() (pypath.core.network.network method)": [[48, "pypath.core.network.Network.htp_interactions"]], "htp_references() (pypath.core.network.network method)": [[48, "pypath.core.network.Network.htp_references"]], "identifiers_by_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.identifiers_by_data_model"]], "identifiers_by_interaction_type (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.identifiers_by_interaction_type"]], "identifiers_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.identifiers_by_interaction_type_and_data_model"]], "identifiers_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.identifiers_by_interaction_type_and_data_model_and_resource"]], "identifiers_by_reference (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.identifiers_by_reference"]], "identifiers_by_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.identifiers_by_resource"]], "init_network() (pypath.core.network.network method)": [[48, "pypath.core.network.Network.init_network"]], "interaction() (pypath.core.network.network method)": [[48, "pypath.core.network.Network.interaction"]], "interaction_by_id() (pypath.core.network.network method)": [[48, "pypath.core.network.Network.interaction_by_id"]], "interaction_by_label() (pypath.core.network.network method)": [[48, "pypath.core.network.Network.interaction_by_label"]], "interaction_types_by_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.interaction_types_by_data_model"]], "interaction_types_by_interaction_type (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.interaction_types_by_interaction_type"]], "interaction_types_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.interaction_types_by_interaction_type_and_data_model"]], "interaction_types_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.interaction_types_by_interaction_type_and_data_model_and_resource"]], "interaction_types_by_reference (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.interaction_types_by_reference"]], "interaction_types_by_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.interaction_types_by_resource"]], "interactions_0_by_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.interactions_0_by_data_model"]], "interactions_0_by_interaction_type (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.interactions_0_by_interaction_type"]], "interactions_0_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.interactions_0_by_interaction_type_and_data_model"]], "interactions_0_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.interactions_0_by_interaction_type_and_data_model_and_resource"]], "interactions_0_by_reference (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.interactions_0_by_reference"]], "interactions_0_by_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.interactions_0_by_resource"]], "interactions_by_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.interactions_by_data_model"]], "interactions_by_interaction_type (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.interactions_by_interaction_type"]], "interactions_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.interactions_by_interaction_type_and_data_model"]], "interactions_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.interactions_by_interaction_type_and_data_model_and_resource"]], "interactions_by_reference (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.interactions_by_reference"]], "interactions_by_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.interactions_by_resource"]], "interactions_directed_by_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.interactions_directed_by_data_model"]], "interactions_directed_by_interaction_type (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.interactions_directed_by_interaction_type"]], "interactions_directed_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.interactions_directed_by_interaction_type_and_data_model"]], "interactions_directed_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.interactions_directed_by_interaction_type_and_data_model_and_resource"]], "interactions_directed_by_reference (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.interactions_directed_by_reference"]], "interactions_directed_by_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.interactions_directed_by_resource"]], "interactions_mutual_by_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.interactions_mutual_by_data_model"]], "interactions_mutual_by_interaction_type (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.interactions_mutual_by_interaction_type"]], "interactions_mutual_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.interactions_mutual_by_interaction_type_and_data_model"]], "interactions_mutual_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.interactions_mutual_by_interaction_type_and_data_model_and_resource"]], "interactions_mutual_by_reference (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.interactions_mutual_by_reference"]], "interactions_mutual_by_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.interactions_mutual_by_resource"]], "interactions_negative_by_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.interactions_negative_by_data_model"]], "interactions_negative_by_interaction_type (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.interactions_negative_by_interaction_type"]], "interactions_negative_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.interactions_negative_by_interaction_type_and_data_model"]], "interactions_negative_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.interactions_negative_by_interaction_type_and_data_model_and_resource"]], "interactions_negative_by_reference (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.interactions_negative_by_reference"]], "interactions_negative_by_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.interactions_negative_by_resource"]], "interactions_non_directed_0_by_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.interactions_non_directed_0_by_data_model"]], "interactions_non_directed_0_by_interaction_type (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.interactions_non_directed_0_by_interaction_type"]], "interactions_non_directed_0_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.interactions_non_directed_0_by_interaction_type_and_data_model"]], "interactions_non_directed_0_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.interactions_non_directed_0_by_interaction_type_and_data_model_and_resource"]], "interactions_non_directed_0_by_reference (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.interactions_non_directed_0_by_reference"]], "interactions_non_directed_0_by_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.interactions_non_directed_0_by_resource"]], "interactions_non_directed_by_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.interactions_non_directed_by_data_model"]], "interactions_non_directed_by_interaction_type (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.interactions_non_directed_by_interaction_type"]], "interactions_non_directed_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.interactions_non_directed_by_interaction_type_and_data_model"]], "interactions_non_directed_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.interactions_non_directed_by_interaction_type_and_data_model_and_resource"]], "interactions_non_directed_by_reference (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.interactions_non_directed_by_reference"]], "interactions_non_directed_by_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.interactions_non_directed_by_resource"]], "interactions_positive_by_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.interactions_positive_by_data_model"]], "interactions_positive_by_interaction_type (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.interactions_positive_by_interaction_type"]], "interactions_positive_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.interactions_positive_by_interaction_type_and_data_model"]], "interactions_positive_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.interactions_positive_by_interaction_type_and_data_model_and_resource"]], "interactions_positive_by_reference (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.interactions_positive_by_reference"]], "interactions_positive_by_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.interactions_positive_by_resource"]], "interactions_signed_by_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.interactions_signed_by_data_model"]], "interactions_signed_by_interaction_type (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.interactions_signed_by_interaction_type"]], "interactions_signed_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.interactions_signed_by_interaction_type_and_data_model"]], "interactions_signed_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.interactions_signed_by_interaction_type_and_data_model_and_resource"]], "interactions_signed_by_reference (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.interactions_signed_by_reference"]], "interactions_signed_by_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.interactions_signed_by_resource"]], "interactions_undirected_0_by_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.interactions_undirected_0_by_data_model"]], "interactions_undirected_0_by_interaction_type (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.interactions_undirected_0_by_interaction_type"]], "interactions_undirected_0_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.interactions_undirected_0_by_interaction_type_and_data_model"]], "interactions_undirected_0_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.interactions_undirected_0_by_interaction_type_and_data_model_and_resource"]], "interactions_undirected_0_by_reference (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.interactions_undirected_0_by_reference"]], "interactions_undirected_0_by_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.interactions_undirected_0_by_resource"]], "interactions_undirected_by_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.interactions_undirected_by_data_model"]], "interactions_undirected_by_interaction_type (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.interactions_undirected_by_interaction_type"]], "interactions_undirected_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.interactions_undirected_by_interaction_type_and_data_model"]], "interactions_undirected_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.interactions_undirected_by_interaction_type_and_data_model_and_resource"]], "interactions_undirected_by_reference (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.interactions_undirected_by_reference"]], "interactions_undirected_by_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.interactions_undirected_by_resource"]], "labels_by_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.labels_by_data_model"]], "labels_by_interaction_type (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.labels_by_interaction_type"]], "labels_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.labels_by_interaction_type_and_data_model"]], "labels_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.labels_by_interaction_type_and_data_model_and_resource"]], "labels_by_reference (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.labels_by_reference"]], "labels_by_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.labels_by_resource"]], "lncrna_identifiers_by_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.lncrna_identifiers_by_data_model"]], "lncrna_identifiers_by_interaction_type (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.lncrna_identifiers_by_interaction_type"]], "lncrna_identifiers_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.lncrna_identifiers_by_interaction_type_and_data_model"]], "lncrna_identifiers_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.lncrna_identifiers_by_interaction_type_and_data_model_and_resource"]], "lncrna_identifiers_by_reference (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.lncrna_identifiers_by_reference"]], "lncrna_identifiers_by_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.lncrna_identifiers_by_resource"]], "lncrna_labels_by_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.lncrna_labels_by_data_model"]], "lncrna_labels_by_interaction_type (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.lncrna_labels_by_interaction_type"]], "lncrna_labels_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.lncrna_labels_by_interaction_type_and_data_model"]], "lncrna_labels_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.lncrna_labels_by_interaction_type_and_data_model_and_resource"]], "lncrna_labels_by_reference (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.lncrna_labels_by_reference"]], "lncrna_labels_by_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.lncrna_labels_by_resource"]], "lncrnas_by_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.lncrnas_by_data_model"]], "lncrnas_by_interaction_type (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.lncrnas_by_interaction_type"]], "lncrnas_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.lncrnas_by_interaction_type_and_data_model"]], "lncrnas_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.lncrnas_by_interaction_type_and_data_model_and_resource"]], "lncrnas_by_reference (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.lncrnas_by_reference"]], "lncrnas_by_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.lncrnas_by_resource"]], "load() (pypath.core.network.network method)": [[48, "pypath.core.network.Network.load"]], "load_from_pickle() (pypath.core.network.network method)": [[48, "pypath.core.network.Network.load_from_pickle"]], "load_resource() (pypath.core.network.network method)": [[48, "pypath.core.network.Network.load_resource"]], "load_resources() (pypath.core.network.network method)": [[48, "pypath.core.network.Network.load_resources"]], "make_df() (pypath.core.network.network method)": [[48, "pypath.core.network.Network.make_df"]], "mirna_identifiers_by_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.mirna_identifiers_by_data_model"]], "mirna_identifiers_by_interaction_type (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.mirna_identifiers_by_interaction_type"]], "mirna_identifiers_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.mirna_identifiers_by_interaction_type_and_data_model"]], "mirna_identifiers_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.mirna_identifiers_by_interaction_type_and_data_model_and_resource"]], "mirna_identifiers_by_reference (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.mirna_identifiers_by_reference"]], "mirna_identifiers_by_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.mirna_identifiers_by_resource"]], "mirna_labels_by_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.mirna_labels_by_data_model"]], "mirna_labels_by_interaction_type (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.mirna_labels_by_interaction_type"]], "mirna_labels_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.mirna_labels_by_interaction_type_and_data_model"]], "mirna_labels_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.mirna_labels_by_interaction_type_and_data_model_and_resource"]], "mirna_labels_by_reference (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.mirna_labels_by_reference"]], "mirna_labels_by_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.mirna_labels_by_resource"]], "mirna_target() (pypath.core.network.network class method)": [[48, "pypath.core.network.Network.mirna_target"]], "mirnas_by_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.mirnas_by_data_model"]], "mirnas_by_interaction_type (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.mirnas_by_interaction_type"]], "mirnas_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.mirnas_by_interaction_type_and_data_model"]], "mirnas_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.mirnas_by_interaction_type_and_data_model_and_resource"]], "mirnas_by_reference (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.mirnas_by_reference"]], "mirnas_by_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.mirnas_by_resource"]], "numof_interactions_per_reference() (pypath.core.network.network method)": [[48, "pypath.core.network.Network.numof_interactions_per_reference"]], "organisms_check() (pypath.core.network.network method)": [[48, "pypath.core.network.Network.organisms_check"]], "partners() (pypath.core.network.network method)": [[48, "pypath.core.network.Network.partners"]], "post_transcriptionally_activated_by (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.post_transcriptionally_activated_by"]], "post_transcriptionally_activates (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.post_transcriptionally_activates"]], "post_transcriptionally_regulated_by (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.post_transcriptionally_regulated_by"]], "post_transcriptionally_regulates (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.post_transcriptionally_regulates"]], "post_transcriptionally_suppressed_by (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.post_transcriptionally_suppressed_by"]], "post_transcriptionally_suppresses (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.post_transcriptionally_suppresses"]], "post_translationally_activated_by (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.post_translationally_activated_by"]], "post_translationally_activates (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.post_translationally_activates"]], "post_translationally_regulated_by (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.post_translationally_regulated_by"]], "post_translationally_regulates (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.post_translationally_regulates"]], "post_translationally_suppressed_by (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.post_translationally_suppressed_by"]], "post_translationally_suppresses (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.post_translationally_suppresses"]], "protein_identifiers_by_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.protein_identifiers_by_data_model"]], "protein_identifiers_by_interaction_type (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.protein_identifiers_by_interaction_type"]], "protein_identifiers_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.protein_identifiers_by_interaction_type_and_data_model"]], "protein_identifiers_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.protein_identifiers_by_interaction_type_and_data_model_and_resource"]], "protein_identifiers_by_reference (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.protein_identifiers_by_reference"]], "protein_identifiers_by_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.protein_identifiers_by_resource"]], "protein_labels_by_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.protein_labels_by_data_model"]], "protein_labels_by_interaction_type (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.protein_labels_by_interaction_type"]], "protein_labels_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.protein_labels_by_interaction_type_and_data_model"]], "protein_labels_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.protein_labels_by_interaction_type_and_data_model_and_resource"]], "protein_labels_by_reference (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.protein_labels_by_reference"]], "protein_labels_by_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.protein_labels_by_resource"]], "proteins_by_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.proteins_by_data_model"]], "proteins_by_interaction_type (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.proteins_by_interaction_type"]], "proteins_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.proteins_by_interaction_type_and_data_model"]], "proteins_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.proteins_by_interaction_type_and_data_model_and_resource"]], "proteins_by_reference (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.proteins_by_reference"]], "proteins_by_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.proteins_by_resource"]], "random_interaction() (pypath.core.network.network method)": [[48, "pypath.core.network.Network.random_interaction"]], "references_by_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.references_by_data_model"]], "references_by_interaction_type (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.references_by_interaction_type"]], "references_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.references_by_interaction_type_and_data_model"]], "references_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.references_by_interaction_type_and_data_model_and_resource"]], "references_by_reference (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.references_by_reference"]], "references_by_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.references_by_resource"]], "regulated_by (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.regulated_by"]], "regulates (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.regulates"]], "reload() (pypath.core.network.network method)": [[48, "pypath.core.network.Network.reload"]], "remove_interaction() (pypath.core.network.network method)": [[48, "pypath.core.network.Network.remove_interaction"]], "remove_loops() (pypath.core.network.network method)": [[48, "pypath.core.network.Network.remove_loops"]], "remove_node() (pypath.core.network.network method)": [[48, "pypath.core.network.Network.remove_node"]], "remove_zero_degree() (pypath.core.network.network method)": [[48, "pypath.core.network.Network.remove_zero_degree"]], "reset() (pypath.core.network.network method)": [[48, "pypath.core.network.Network.reset"]], "resource_names (pypath.core.network.network property)": [[48, "pypath.core.network.Network.resource_names"]], "resource_names_by_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.resource_names_by_data_model"]], "resource_names_by_interaction_type (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.resource_names_by_interaction_type"]], "resource_names_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.resource_names_by_interaction_type_and_data_model"]], "resource_names_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.resource_names_by_interaction_type_and_data_model_and_resource"]], "resource_names_by_reference (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.resource_names_by_reference"]], "resource_names_by_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.resource_names_by_resource"]], "resource_names_via_by_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.resource_names_via_by_data_model"]], "resource_names_via_by_interaction_type (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.resource_names_via_by_interaction_type"]], "resource_names_via_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.resource_names_via_by_interaction_type_and_data_model"]], "resource_names_via_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.resource_names_via_by_interaction_type_and_data_model_and_resource"]], "resource_names_via_by_reference (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.resource_names_via_by_reference"]], "resource_names_via_by_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.resource_names_via_by_resource"]], "resources (pypath.core.network.network property)": [[48, "pypath.core.network.Network.resources"]], "resources_by_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.resources_by_data_model"]], "resources_by_interaction_type (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.resources_by_interaction_type"]], "resources_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.resources_by_interaction_type_and_data_model"]], "resources_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.resources_by_interaction_type_and_data_model_and_resource"]], "resources_by_reference (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.resources_by_reference"]], "resources_by_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.resources_by_resource"]], "resources_via_by_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.resources_via_by_data_model"]], "resources_via_by_interaction_type (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.resources_via_by_interaction_type"]], "resources_via_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.resources_via_by_interaction_type_and_data_model"]], "resources_via_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.resources_via_by_interaction_type_and_data_model_and_resource"]], "resources_via_by_reference (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.resources_via_by_reference"]], "resources_via_by_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.resources_via_by_resource"]], "save_to_pickle() (pypath.core.network.network method)": [[48, "pypath.core.network.Network.save_to_pickle"]], "small_molecule_identifiers_by_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.small_molecule_identifiers_by_data_model"]], "small_molecule_identifiers_by_interaction_type (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.small_molecule_identifiers_by_interaction_type"]], "small_molecule_identifiers_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.small_molecule_identifiers_by_interaction_type_and_data_model"]], "small_molecule_identifiers_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.small_molecule_identifiers_by_interaction_type_and_data_model_and_resource"]], "small_molecule_identifiers_by_reference (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.small_molecule_identifiers_by_reference"]], "small_molecule_identifiers_by_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.small_molecule_identifiers_by_resource"]], "small_molecule_labels_by_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.small_molecule_labels_by_data_model"]], "small_molecule_labels_by_interaction_type (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.small_molecule_labels_by_interaction_type"]], "small_molecule_labels_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.small_molecule_labels_by_interaction_type_and_data_model"]], "small_molecule_labels_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.small_molecule_labels_by_interaction_type_and_data_model_and_resource"]], "small_molecule_labels_by_reference (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.small_molecule_labels_by_reference"]], "small_molecule_labels_by_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.small_molecule_labels_by_resource"]], "small_molecules_by_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.small_molecules_by_data_model"]], "small_molecules_by_interaction_type (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.small_molecules_by_interaction_type"]], "small_molecules_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.small_molecules_by_interaction_type_and_data_model"]], "small_molecules_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.small_molecules_by_interaction_type_and_data_model_and_resource"]], "small_molecules_by_reference (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.small_molecules_by_reference"]], "small_molecules_by_resource (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.small_molecules_by_resource"]], "summaries_tab() (pypath.core.network.network method)": [[48, "pypath.core.network.Network.summaries_tab"]], "suppressed_by (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.suppressed_by"]], "suppresses (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.suppresses"]], "to_igraph() (pypath.core.network.network method)": [[48, "pypath.core.network.Network.to_igraph"]], "transcription() (pypath.core.network.network class method)": [[48, "pypath.core.network.Network.transcription"]], "transcriptionally_activated_by (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.transcriptionally_activated_by"]], "transcriptionally_activates (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.transcriptionally_activates"]], "transcriptionally_regulated_by (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.transcriptionally_regulated_by"]], "transcriptionally_regulates (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.transcriptionally_regulates"]], "transcriptionally_suppressed_by (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.transcriptionally_suppressed_by"]], "transcriptionally_suppresses (pypath.core.network.network attribute)": [[48, "pypath.core.network.Network.transcriptionally_suppresses"]], "networkentitycollection (class in pypath.core.network)": [[49, "pypath.core.network.NetworkEntityCollection"]], "__init__() (pypath.core.network.networkentitycollection method)": [[49, "pypath.core.network.NetworkEntityCollection.__init__"]], "networkstatsrecord (class in pypath.core.network)": [[50, "pypath.core.network.NetworkStatsRecord"]], "__init__() (pypath.core.network.networkstatsrecord method)": [[50, "pypath.core.network.NetworkStatsRecord.__init__"]], "by_category (pypath.core.network.networkstatsrecord attribute)": [[50, "pypath.core.network.NetworkStatsRecord.by_category"]], "by_resource (pypath.core.network.networkstatsrecord attribute)": [[50, "pypath.core.network.NetworkStatsRecord.by_resource"]], "cat_resource (pypath.core.network.networkstatsrecord attribute)": [[50, "pypath.core.network.NetworkStatsRecord.cat_resource"]], "count() (pypath.core.network.networkstatsrecord method)": [[50, "pypath.core.network.NetworkStatsRecord.count"]], "index() (pypath.core.network.networkstatsrecord method)": [[50, "pypath.core.network.NetworkStatsRecord.index"]], "label (pypath.core.network.networkstatsrecord attribute)": [[50, "pypath.core.network.NetworkStatsRecord.label"]], "method (pypath.core.network.networkstatsrecord attribute)": [[50, "pypath.core.network.NetworkStatsRecord.method"]], "percent (pypath.core.network.networkstatsrecord attribute)": [[50, "pypath.core.network.NetworkStatsRecord.percent"]], "percent_cat (pypath.core.network.networkstatsrecord attribute)": [[50, "pypath.core.network.NetworkStatsRecord.percent_cat"]], "percent_res_cat (pypath.core.network.networkstatsrecord attribute)": [[50, "pypath.core.network.NetworkStatsRecord.percent_res_cat"]], "resource_cat (pypath.core.network.networkstatsrecord attribute)": [[50, "pypath.core.network.NetworkStatsRecord.resource_cat"]], "shared (pypath.core.network.networkstatsrecord attribute)": [[50, "pypath.core.network.NetworkStatsRecord.shared"]], "shared_cat (pypath.core.network.networkstatsrecord attribute)": [[50, "pypath.core.network.NetworkStatsRecord.shared_cat"]], "shared_res_cat (pypath.core.network.networkstatsrecord attribute)": [[50, "pypath.core.network.NetworkStatsRecord.shared_res_cat"]], "total (pypath.core.network.networkstatsrecord attribute)": [[50, "pypath.core.network.NetworkStatsRecord.total"]], "unique (pypath.core.network.networkstatsrecord attribute)": [[50, "pypath.core.network.NetworkStatsRecord.unique"]], "unique_cat (pypath.core.network.networkstatsrecord attribute)": [[50, "pypath.core.network.NetworkStatsRecord.unique_cat"]], "unique_res_cat (pypath.core.network.networkstatsrecord attribute)": [[50, "pypath.core.network.NetworkStatsRecord.unique_res_cat"]], "get_db() (in module pypath.core.network)": [[51, "pypath.core.network.get_db"]], "init_db() (in module pypath.core.network)": [[52, "pypath.core.network.init_db"]], "pypath.data": [[53, "module-pypath.data"]], "disclaimer() (in module pypath)": [[54, "pypath.disclaimer"]], "info() (in module pypath)": [[55, "pypath.info"]], "pypath.inputs": [[56, "module-pypath.inputs"]], "pypath.inputs.abs": [[57, "module-pypath.inputs.abs"]], "abs_interactions() (in module pypath.inputs.abs)": [[58, "pypath.inputs.abs.abs_interactions"]], "pypath.inputs.acsn": [[59, "module-pypath.inputs.acsn"]], "acsn_interactions() (in module pypath.inputs.acsn)": [[60, "pypath.inputs.acsn.acsn_interactions"]], "acsn_interactions_sif() (in module pypath.inputs.acsn)": [[61, "pypath.inputs.acsn.acsn_interactions_sif"]], "pypath.inputs.adhesome": [[62, "module-pypath.inputs.adhesome"]], "adhesome_annotations() (in module pypath.inputs.adhesome)": [[63, "pypath.inputs.adhesome.adhesome_annotations"]], "adhesome_interactions() (in module pypath.inputs.adhesome)": [[64, "pypath.inputs.adhesome.adhesome_interactions"]], "pypath.inputs.adrecs": [[65, "module-pypath.inputs.adrecs"]], "adrecsadr (class in pypath.inputs.adrecs)": [[66, "pypath.inputs.adrecs.AdrecsAdr"]], "__init__() (pypath.inputs.adrecs.adrecsadr method)": [[66, "pypath.inputs.adrecs.AdrecsAdr.__init__"]], "adr_class (pypath.inputs.adrecs.adrecsadr attribute)": [[66, "pypath.inputs.adrecs.AdrecsAdr.adr_class"]], "badd (pypath.inputs.adrecs.adrecsadr attribute)": [[66, "pypath.inputs.adrecs.AdrecsAdr.badd"]], "count() (pypath.inputs.adrecs.adrecsadr method)": [[66, "pypath.inputs.adrecs.AdrecsAdr.count"]], "index() (pypath.inputs.adrecs.adrecsadr method)": [[66, "pypath.inputs.adrecs.AdrecsAdr.index"]], "adrecschildparent (class in pypath.inputs.adrecs)": [[67, "pypath.inputs.adrecs.AdrecsChildParent"]], "__init__() (pypath.inputs.adrecs.adrecschildparent method)": [[67, "pypath.inputs.adrecs.AdrecsChildParent.__init__"]], "child (pypath.inputs.adrecs.adrecschildparent attribute)": [[67, "pypath.inputs.adrecs.AdrecsChildParent.child"]], "count() (pypath.inputs.adrecs.adrecschildparent method)": [[67, "pypath.inputs.adrecs.AdrecsChildParent.count"]], "index() (pypath.inputs.adrecs.adrecschildparent method)": [[67, "pypath.inputs.adrecs.AdrecsChildParent.index"]], "parent (pypath.inputs.adrecs.adrecschildparent attribute)": [[67, "pypath.inputs.adrecs.AdrecsChildParent.parent"]], "adrecsdrug (class in pypath.inputs.adrecs)": [[68, "pypath.inputs.adrecs.AdrecsDrug"]], "__init__() (pypath.inputs.adrecs.adrecsdrug method)": [[68, "pypath.inputs.adrecs.AdrecsDrug.__init__"]], "badd (pypath.inputs.adrecs.adrecsdrug attribute)": [[68, "pypath.inputs.adrecs.AdrecsDrug.badd"]], "count() (pypath.inputs.adrecs.adrecsdrug method)": [[68, "pypath.inputs.adrecs.AdrecsDrug.count"]], "drug (pypath.inputs.adrecs.adrecsdrug attribute)": [[68, "pypath.inputs.adrecs.AdrecsDrug.drug"]], "drugbank (pypath.inputs.adrecs.adrecsdrug attribute)": [[68, "pypath.inputs.adrecs.AdrecsDrug.drugbank"]], "index() (pypath.inputs.adrecs.adrecsdrug method)": [[68, "pypath.inputs.adrecs.AdrecsDrug.index"]], "kegg (pypath.inputs.adrecs.adrecsdrug attribute)": [[68, "pypath.inputs.adrecs.AdrecsDrug.kegg"]], "mesh (pypath.inputs.adrecs.adrecsdrug attribute)": [[68, "pypath.inputs.adrecs.AdrecsDrug.mesh"]], "pubchem_cid (pypath.inputs.adrecs.adrecsdrug attribute)": [[68, "pypath.inputs.adrecs.AdrecsDrug.pubchem_cid"]], "synonyms (pypath.inputs.adrecs.adrecsdrug attribute)": [[68, "pypath.inputs.adrecs.AdrecsDrug.synonyms"]], "tdd (pypath.inputs.adrecs.adrecsdrug attribute)": [[68, "pypath.inputs.adrecs.AdrecsDrug.tdd"]], "adrecsdrugadr (class in pypath.inputs.adrecs)": [[69, "pypath.inputs.adrecs.AdrecsDrugAdr"]], "__init__() (pypath.inputs.adrecs.adrecsdrugadr method)": [[69, "pypath.inputs.adrecs.AdrecsDrugAdr.__init__"]], "adr (pypath.inputs.adrecs.adrecsdrugadr attribute)": [[69, "pypath.inputs.adrecs.AdrecsDrugAdr.adr"]], "adr_badd (pypath.inputs.adrecs.adrecsdrugadr attribute)": [[69, "pypath.inputs.adrecs.AdrecsDrugAdr.adr_badd"]], "count() (pypath.inputs.adrecs.adrecsdrugadr method)": [[69, "pypath.inputs.adrecs.AdrecsDrugAdr.count"]], "drug (pypath.inputs.adrecs.adrecsdrugadr attribute)": [[69, "pypath.inputs.adrecs.AdrecsDrugAdr.drug"]], "drug_badd (pypath.inputs.adrecs.adrecsdrugadr attribute)": [[69, "pypath.inputs.adrecs.AdrecsDrugAdr.drug_badd"]], "index() (pypath.inputs.adrecs.adrecsdrugadr method)": [[69, "pypath.inputs.adrecs.AdrecsDrugAdr.index"]], "adrecsterm (class in pypath.inputs.adrecs)": [[70, "pypath.inputs.adrecs.AdrecsTerm"]], "__init__() (pypath.inputs.adrecs.adrecsterm method)": [[70, "pypath.inputs.adrecs.AdrecsTerm.__init__"]], "adrecs_class (pypath.inputs.adrecs.adrecsterm attribute)": [[70, "pypath.inputs.adrecs.AdrecsTerm.adrecs_class"]], "badd (pypath.inputs.adrecs.adrecsterm attribute)": [[70, "pypath.inputs.adrecs.AdrecsTerm.badd"]], "count() (pypath.inputs.adrecs.adrecsterm method)": [[70, "pypath.inputs.adrecs.AdrecsTerm.count"]], "index() (pypath.inputs.adrecs.adrecsterm method)": [[70, "pypath.inputs.adrecs.AdrecsTerm.index"]], "meddra (pypath.inputs.adrecs.adrecsterm attribute)": [[70, "pypath.inputs.adrecs.AdrecsTerm.meddra"]], "name (pypath.inputs.adrecs.adrecsterm attribute)": [[70, "pypath.inputs.adrecs.AdrecsTerm.name"]], "synonyms (pypath.inputs.adrecs.adrecsterm attribute)": [[70, "pypath.inputs.adrecs.AdrecsTerm.synonyms"]], "adrecs_adr_ontology() (in module pypath.inputs.adrecs)": [[71, "pypath.inputs.adrecs.adrecs_adr_ontology"]], "adrecs_drug_adr() (in module pypath.inputs.adrecs)": [[72, "pypath.inputs.adrecs.adrecs_drug_adr"]], "adrecs_drug_identifiers() (in module pypath.inputs.adrecs)": [[73, "pypath.inputs.adrecs.adrecs_drug_identifiers"]], "adrecs_hierarchy() (in module pypath.inputs.adrecs)": [[74, "pypath.inputs.adrecs.adrecs_hierarchy"]], "pypath.inputs.almen2009": [[75, "module-pypath.inputs.almen2009"]], "almen2009_annotations() (in module pypath.inputs.almen2009)": [[76, "pypath.inputs.almen2009.almen2009_annotations"]], "pypath.inputs.baccin2019": [[77, "module-pypath.inputs.baccin2019"]], "baccin2019_annotations() (in module pypath.inputs.baccin2019)": [[78, "pypath.inputs.baccin2019.baccin2019_annotations"]], "baccin2019_interactions() (in module pypath.inputs.baccin2019)": [[79, "pypath.inputs.baccin2019.baccin2019_interactions"]], "pypath.inputs.biogps": [[80, "module-pypath.inputs.biogps"]], "biogpsdataset (class in pypath.inputs.biogps)": [[81, "pypath.inputs.biogps.BiogpsDataset"]], "__init__() (pypath.inputs.biogps.biogpsdataset method)": [[81, "pypath.inputs.biogps.BiogpsDataset.__init__"]], "count() (pypath.inputs.biogps.biogpsdataset method)": [[81, "pypath.inputs.biogps.BiogpsDataset.count"]], "index() (pypath.inputs.biogps.biogpsdataset method)": [[81, "pypath.inputs.biogps.BiogpsDataset.index"]], "label (pypath.inputs.biogps.biogpsdataset attribute)": [[81, "pypath.inputs.biogps.BiogpsDataset.label"]], "organism (pypath.inputs.biogps.biogpsdataset attribute)": [[81, "pypath.inputs.biogps.BiogpsDataset.organism"]], "url (pypath.inputs.biogps.biogpsdataset attribute)": [[81, "pypath.inputs.biogps.BiogpsDataset.url"]], "biogps_annotations() (in module pypath.inputs.biogps)": [[82, "pypath.inputs.biogps.biogps_annotations"]], "biogps_datasets() (in module pypath.inputs.biogps)": [[83, "pypath.inputs.biogps.biogps_datasets"]], "biogps_download() (in module pypath.inputs.biogps)": [[84, "pypath.inputs.biogps.biogps_download"]], "biogps_download_all() (in module pypath.inputs.biogps)": [[85, "pypath.inputs.biogps.biogps_download_all"]], "pypath.inputs.biogrid": [[86, "module-pypath.inputs.biogrid"]], "biogrid_all_interactions() (in module pypath.inputs.biogrid)": [[87, "pypath.inputs.biogrid.biogrid_all_interactions"]], "biogrid_interactions() (in module pypath.inputs.biogrid)": [[88, "pypath.inputs.biogrid.biogrid_interactions"]], "pypath.inputs.biomart": [[89, "module-pypath.inputs.biomart"]], "biomart_homology() (in module pypath.inputs.biomart)": [[90, "pypath.inputs.biomart.biomart_homology"]], "biomart_microarray() (in module pypath.inputs.biomart)": [[91, "pypath.inputs.biomart.biomart_microarray"]], "biomart_microarray_types() (in module pypath.inputs.biomart)": [[92, "pypath.inputs.biomart.biomart_microarray_types"]], "biomart_microarrays() (in module pypath.inputs.biomart)": [[93, "pypath.inputs.biomart.biomart_microarrays"]], "biomart_query() (in module pypath.inputs.biomart)": [[94, "pypath.inputs.biomart.biomart_query"]], "pypath.inputs.biomodels": [[95, "module-pypath.inputs.biomodels"]], "download_single_model() (in module pypath.inputs.biomodels)": [[96, "pypath.inputs.biomodels.download_single_model"]], "get_all_models() (in module pypath.inputs.biomodels)": [[97, "pypath.inputs.biomodels.get_all_models"]], "get_biomodels() (in module pypath.inputs.biomodels)": [[98, "pypath.inputs.biomodels.get_biomodels"]], "get_biomodels_req() (in module pypath.inputs.biomodels)": [[99, "pypath.inputs.biomodels.get_biomodels_req"]], "get_single_model() (in module pypath.inputs.biomodels)": [[100, "pypath.inputs.biomodels.get_single_model"]], "pypath.inputs.ca1": [[101, "module-pypath.inputs.ca1"]], "ca1_interactions() (in module pypath.inputs.ca1)": [[102, "pypath.inputs.ca1.ca1_interactions"]], "pypath.inputs.cancercellmap": [[103, "module-pypath.inputs.cancercellmap"]], "ccmap_interactions() (in module pypath.inputs.cancercellmap)": [[104, "pypath.inputs.cancercellmap.ccmap_interactions"]], "pypath.inputs.cancerdrugsdb": [[105, "module-pypath.inputs.cancerdrugsdb"]], "cancerdrugsdb_annotations() (in module pypath.inputs.cancerdrugsdb)": [[106, "pypath.inputs.cancerdrugsdb.cancerdrugsdb_annotations"]], "cancerdrugsdb_download() (in module pypath.inputs.cancerdrugsdb)": [[107, "pypath.inputs.cancerdrugsdb.cancerdrugsdb_download"]], "cancerdrugsdb_interactions() (in module pypath.inputs.cancerdrugsdb)": [[108, "pypath.inputs.cancerdrugsdb.cancerdrugsdb_interactions"]], "pypath.inputs.cancersea": [[109, "module-pypath.inputs.cancersea"]], "cancersea_annotations() (in module pypath.inputs.cancersea)": [[110, "pypath.inputs.cancersea.cancersea_annotations"]], "pypath.inputs.cell": [[111, "module-pypath.inputs.cell"]], "cell_supplementary() (in module pypath.inputs.cell)": [[112, "pypath.inputs.cell.cell_supplementary"]], "pypath.inputs.cellcall": [[113, "module-pypath.inputs.cellcall"]], "cellcall_annotations() (in module pypath.inputs.cellcall)": [[114, "pypath.inputs.cellcall.cellcall_annotations"]], "cellcall_download() (in module pypath.inputs.cellcall)": [[115, "pypath.inputs.cellcall.cellcall_download"]], "cellcall_download_all() (in module pypath.inputs.cellcall)": [[116, "pypath.inputs.cellcall.cellcall_download_all"]], "cellcall_interactions() (in module pypath.inputs.cellcall)": [[117, "pypath.inputs.cellcall.cellcall_interactions"]], "pypath.inputs.cellcellinteractions": [[118, "module-pypath.inputs.cellcellinteractions"]], "cellcellinteractions_annotations() (in module pypath.inputs.cellcellinteractions)": [[119, "pypath.inputs.cellcellinteractions.cellcellinteractions_annotations"]], "pypath.inputs.cellchatdb": [[120, "module-pypath.inputs.cellchatdb"]], "cellchatdb_annotations() (in module pypath.inputs.cellchatdb)": [[121, "pypath.inputs.cellchatdb.cellchatdb_annotations"]], "cellchatdb_cofactors() (in module pypath.inputs.cellchatdb)": [[122, "pypath.inputs.cellchatdb.cellchatdb_cofactors"]], "cellchatdb_complexes() (in module pypath.inputs.cellchatdb)": [[123, "pypath.inputs.cellchatdb.cellchatdb_complexes"]], "cellchatdb_download() (in module pypath.inputs.cellchatdb)": [[124, "pypath.inputs.cellchatdb.cellchatdb_download"]], "cellchatdb_interactions() (in module pypath.inputs.cellchatdb)": [[125, "pypath.inputs.cellchatdb.cellchatdb_interactions"]], "pypath.inputs.cellinker": [[126, "module-pypath.inputs.cellinker"]], "cellinkerinteraction (class in pypath.inputs.cellinker)": [[127, "pypath.inputs.cellinker.CellinkerInteraction"]], "__init__() (pypath.inputs.cellinker.cellinkerinteraction method)": [[127, "pypath.inputs.cellinker.CellinkerInteraction.__init__"]], "count() (pypath.inputs.cellinker.cellinkerinteraction method)": [[127, "pypath.inputs.cellinker.CellinkerInteraction.count"]], "index() (pypath.inputs.cellinker.cellinkerinteraction method)": [[127, "pypath.inputs.cellinker.CellinkerInteraction.index"]], "ligand (pypath.inputs.cellinker.cellinkerinteraction attribute)": [[127, "pypath.inputs.cellinker.CellinkerInteraction.ligand"]], "ligand_location (pypath.inputs.cellinker.cellinkerinteraction attribute)": [[127, "pypath.inputs.cellinker.CellinkerInteraction.ligand_location"]], "pmids (pypath.inputs.cellinker.cellinkerinteraction attribute)": [[127, "pypath.inputs.cellinker.CellinkerInteraction.pmids"]], "receptor (pypath.inputs.cellinker.cellinkerinteraction attribute)": [[127, "pypath.inputs.cellinker.CellinkerInteraction.receptor"]], "receptor_location (pypath.inputs.cellinker.cellinkerinteraction attribute)": [[127, "pypath.inputs.cellinker.CellinkerInteraction.receptor_location"]], "resources (pypath.inputs.cellinker.cellinkerinteraction attribute)": [[127, "pypath.inputs.cellinker.CellinkerInteraction.resources"]], "type (pypath.inputs.cellinker.cellinkerinteraction attribute)": [[127, "pypath.inputs.cellinker.CellinkerInteraction.type"]], "cellinker_annotations() (in module pypath.inputs.cellinker)": [[128, "pypath.inputs.cellinker.cellinker_annotations"]], "cellinker_complex_annotations() (in module pypath.inputs.cellinker)": [[129, "pypath.inputs.cellinker.cellinker_complex_annotations"]], "cellinker_complexes() (in module pypath.inputs.cellinker)": [[130, "pypath.inputs.cellinker.cellinker_complexes"]], "cellinker_complexes_raw() (in module pypath.inputs.cellinker)": [[131, "pypath.inputs.cellinker.cellinker_complexes_raw"]], "cellinker_lr_interactions() (in module pypath.inputs.cellinker)": [[132, "pypath.inputs.cellinker.cellinker_lr_interactions"]], "cellinker_lr_interactions_raw() (in module pypath.inputs.cellinker)": [[133, "pypath.inputs.cellinker.cellinker_lr_interactions_raw"]], "cellinker_protein_annotations() (in module pypath.inputs.cellinker)": [[134, "pypath.inputs.cellinker.cellinker_protein_annotations"]], "cellinker_smol_interactions() (in module pypath.inputs.cellinker)": [[135, "pypath.inputs.cellinker.cellinker_smol_interactions"]], "cellinker_smol_interactions_raw() (in module pypath.inputs.cellinker)": [[136, "pypath.inputs.cellinker.cellinker_smol_interactions_raw"]], "components_to_complex() (in module pypath.inputs.cellinker)": [[137, "pypath.inputs.cellinker.components_to_complex"]], "pypath.inputs.cellphonedb": [[138, "module-pypath.inputs.cellphonedb"]], "cellphonedbannotation (class in pypath.inputs.cellphonedb)": [[139, "pypath.inputs.cellphonedb.CellPhoneDBAnnotation"]], "__init__() (pypath.inputs.cellphonedb.cellphonedbannotation method)": [[139, "pypath.inputs.cellphonedb.CellPhoneDBAnnotation.__init__"]], "count() (pypath.inputs.cellphonedb.cellphonedbannotation method)": [[139, "pypath.inputs.cellphonedb.CellPhoneDBAnnotation.count"]], "index() (pypath.inputs.cellphonedb.cellphonedbannotation method)": [[139, "pypath.inputs.cellphonedb.CellPhoneDBAnnotation.index"]], "integrin (pypath.inputs.cellphonedb.cellphonedbannotation attribute)": [[139, "pypath.inputs.cellphonedb.CellPhoneDBAnnotation.integrin"]], "peripheral (pypath.inputs.cellphonedb.cellphonedbannotation attribute)": [[139, "pypath.inputs.cellphonedb.CellPhoneDBAnnotation.peripheral"]], "receptor (pypath.inputs.cellphonedb.cellphonedbannotation attribute)": [[139, "pypath.inputs.cellphonedb.CellPhoneDBAnnotation.receptor"]], "receptor_class (pypath.inputs.cellphonedb.cellphonedbannotation attribute)": [[139, "pypath.inputs.cellphonedb.CellPhoneDBAnnotation.receptor_class"]], "secreted (pypath.inputs.cellphonedb.cellphonedbannotation attribute)": [[139, "pypath.inputs.cellphonedb.CellPhoneDBAnnotation.secreted"]], "secreted_class (pypath.inputs.cellphonedb.cellphonedbannotation attribute)": [[139, "pypath.inputs.cellphonedb.CellPhoneDBAnnotation.secreted_class"]], "transmembrane (pypath.inputs.cellphonedb.cellphonedbannotation attribute)": [[139, "pypath.inputs.cellphonedb.CellPhoneDBAnnotation.transmembrane"]], "cellphonedb_complex_annotations() (in module pypath.inputs.cellphonedb)": [[140, "pypath.inputs.cellphonedb.cellphonedb_complex_annotations"]], "cellphonedb_complexes() (in module pypath.inputs.cellphonedb)": [[141, "pypath.inputs.cellphonedb.cellphonedb_complexes"]], "cellphonedb_interactions() (in module pypath.inputs.cellphonedb)": [[142, "pypath.inputs.cellphonedb.cellphonedb_interactions"]], "cellphonedb_ligands_receptors() (in module pypath.inputs.cellphonedb)": [[143, "pypath.inputs.cellphonedb.cellphonedb_ligands_receptors"]], "cellphonedb_protein_annotations() (in module pypath.inputs.cellphonedb)": [[144, "pypath.inputs.cellphonedb.cellphonedb_protein_annotations"]], "pypath.inputs.celltalkdb": [[145, "module-pypath.inputs.celltalkdb"]], "celltalkdb_annotations() (in module pypath.inputs.celltalkdb)": [[146, "pypath.inputs.celltalkdb.celltalkdb_annotations"]], "celltalkdb_download() (in module pypath.inputs.celltalkdb)": [[147, "pypath.inputs.celltalkdb.celltalkdb_download"]], "celltalkdb_interactions() (in module pypath.inputs.celltalkdb)": [[148, "pypath.inputs.celltalkdb.celltalkdb_interactions"]], "pypath.inputs.celltypist": [[149, "module-pypath.inputs.celltypist"]], "celltypist_annotations() (in module pypath.inputs.celltypist)": [[150, "pypath.inputs.celltypist.celltypist_annotations"]], "pypath.inputs.chembl": [[151, "module-pypath.inputs.chembl"]], "chembl_activities() (in module pypath.inputs.chembl)": [[152, "pypath.inputs.chembl.chembl_activities"]], "chembl_assays() (in module pypath.inputs.chembl)": [[153, "pypath.inputs.chembl.chembl_assays"]], "chembl_documents() (in module pypath.inputs.chembl)": [[154, "pypath.inputs.chembl.chembl_documents"]], "chembl_drug_indications() (in module pypath.inputs.chembl)": [[155, "pypath.inputs.chembl.chembl_drug_indications"]], "chembl_mechanisms() (in module pypath.inputs.chembl)": [[156, "pypath.inputs.chembl.chembl_mechanisms"]], "chembl_molecules() (in module pypath.inputs.chembl)": [[157, "pypath.inputs.chembl.chembl_molecules"]], "chembl_targets() (in module pypath.inputs.chembl)": [[158, "pypath.inputs.chembl.chembl_targets"]], "pypath.inputs.clinvar": [[159, "module-pypath.inputs.clinvar"]], "clinvar_citations() (in module pypath.inputs.clinvar)": [[160, "pypath.inputs.clinvar.clinvar_citations"]], "clinvar_raw() (in module pypath.inputs.clinvar)": [[161, "pypath.inputs.clinvar.clinvar_raw"]], "pypath.inputs.collectri": [[162, "module-pypath.inputs.collectri"]], "collectri_interactions() (in module pypath.inputs.collectri)": [[163, "pypath.inputs.collectri.collectri_interactions"]], "collectri_raw() (in module pypath.inputs.collectri)": [[164, "pypath.inputs.collectri.collectri_raw"]], "pypath.inputs.common": [[165, "module-pypath.inputs.common"]], "csv_sep_change() (in module pypath.inputs.common)": [[166, "pypath.inputs.common.csv_sep_change"]], "glom_fields() (in module pypath.inputs.common)": [[167, "pypath.inputs.common.glom_fields"]], "json_extract() (in module pypath.inputs.common)": [[168, "pypath.inputs.common.json_extract"]], "json_read() (in module pypath.inputs.common)": [[169, "pypath.inputs.common.json_read"]], "read_table() (in module pypath.inputs.common)": [[170, "pypath.inputs.common.read_table"]], "read_xls() (in module pypath.inputs.common)": [[171, "pypath.inputs.common.read_xls"]], "pypath.inputs.compath": [[172, "module-pypath.inputs.compath"]], "compath_mappings() (in module pypath.inputs.compath)": [[173, "pypath.inputs.compath.compath_mappings"]], "pypath.inputs.compleat": [[174, "module-pypath.inputs.compleat"]], "compleat_complexes() (in module pypath.inputs.compleat)": [[175, "pypath.inputs.compleat.compleat_complexes"]], "compleat_raw() (in module pypath.inputs.compleat)": [[176, "pypath.inputs.compleat.compleat_raw"]], "pypath.inputs.complexportal": [[177, "module-pypath.inputs.complexportal"]], "complexportal_complexes() (in module pypath.inputs.complexportal)": [[178, "pypath.inputs.complexportal.complexportal_complexes"]], "pypath.inputs.comppi": [[179, "module-pypath.inputs.comppi"]], "comppi_interaction_locations() (in module pypath.inputs.comppi)": [[180, "pypath.inputs.comppi.comppi_interaction_locations"]], "comppi_locations() (in module pypath.inputs.comppi)": [[181, "pypath.inputs.comppi.comppi_locations"]], "pypath.inputs.connectomedb": [[182, "module-pypath.inputs.connectomedb"]], "connectomedb_annotations() (in module pypath.inputs.connectomedb)": [[183, "pypath.inputs.connectomedb.connectomedb_annotations"]], "connectomedb_interactions() (in module pypath.inputs.connectomedb)": [[184, "pypath.inputs.connectomedb.connectomedb_interactions"]], "pypath.inputs.corum": [[185, "module-pypath.inputs.corum"]], "corum_complexes() (in module pypath.inputs.corum)": [[186, "pypath.inputs.corum.corum_complexes"]], "pypath.inputs.cosmic": [[187, "module-pypath.inputs.cosmic"]], "cancer_gene_census_annotations() (in module pypath.inputs.cosmic)": [[188, "pypath.inputs.cosmic.cancer_gene_census_annotations"]], "pypath.inputs.cpad": [[189, "module-pypath.inputs.cpad"]], "cpad_annotations() (in module pypath.inputs.cpad)": [[190, "pypath.inputs.cpad.cpad_annotations"]], "cpad_pathway_cancer() (in module pypath.inputs.cpad)": [[191, "pypath.inputs.cpad.cpad_pathway_cancer"]], "get_cpad() (in module pypath.inputs.cpad)": [[192, "pypath.inputs.cpad.get_cpad"]], "pypath.inputs.cpdb": [[193, "module-pypath.inputs.cpdb"]], "cpdb_interactions() (in module pypath.inputs.cpdb)": [[194, "pypath.inputs.cpdb.cpdb_interactions"]], "cpdb_interactions_ltp() (in module pypath.inputs.cpdb)": [[195, "pypath.inputs.cpdb.cpdb_interactions_ltp"]], "pypath.inputs.credentials": [[196, "module-pypath.inputs.credentials"]], "credentials() (in module pypath.inputs.credentials)": [[197, "pypath.inputs.credentials.credentials"]], "pypath.inputs.csa": [[198, "module-pypath.inputs.csa"]], "get_csa() (in module pypath.inputs.csa)": [[199, "pypath.inputs.csa.get_csa"]], "pypath.inputs.cspa": [[200, "module-pypath.inputs.cspa"]], "cspa_annotations() (in module pypath.inputs.cspa)": [[201, "pypath.inputs.cspa.cspa_annotations"]], "cspa_cell_type_annotations() (in module pypath.inputs.cspa)": [[202, "pypath.inputs.cspa.cspa_cell_type_annotations"]], "cspa_cell_types() (in module pypath.inputs.cspa)": [[203, "pypath.inputs.cspa.cspa_cell_types"]], "pypath.inputs.ctdbase": [[204, "module-pypath.inputs.ctdbase"]], "ctdbase_relations() (in module pypath.inputs.ctdbase)": [[205, "pypath.inputs.ctdbase.ctdbase_relations"]], "ctdbase_vocabulary() (in module pypath.inputs.ctdbase)": [[206, "pypath.inputs.ctdbase.ctdbase_vocabulary"]], "pypath.inputs.cytosig": [[207, "module-pypath.inputs.cytosig"]], "cytosig_annotations() (in module pypath.inputs.cytosig)": [[208, "pypath.inputs.cytosig.cytosig_annotations"]], "cytosig_df() (in module pypath.inputs.cytosig)": [[209, "pypath.inputs.cytosig.cytosig_df"]], "pypath.inputs.dbptm": [[210, "module-pypath.inputs.dbptm"]], "dbptm_enzyme_substrate() (in module pypath.inputs.dbptm)": [[211, "pypath.inputs.dbptm.dbptm_enzyme_substrate"]], "dbptm_enzyme_substrate_old() (in module pypath.inputs.dbptm)": [[212, "pypath.inputs.dbptm.dbptm_enzyme_substrate_old"]], "dbptm_interactions() (in module pypath.inputs.dbptm)": [[213, "pypath.inputs.dbptm.dbptm_interactions"]], "pypath.inputs.ddinter": [[214, "module-pypath.inputs.ddinter"]], "ddinter_drug_interactions() (in module pypath.inputs.ddinter)": [[215, "pypath.inputs.ddinter.ddinter_drug_interactions"]], "ddinter_identifiers() (in module pypath.inputs.ddinter)": [[216, "pypath.inputs.ddinter.ddinter_identifiers"]], "ddinter_interactions() (in module pypath.inputs.ddinter)": [[217, "pypath.inputs.ddinter.ddinter_interactions"]], "ddinter_mappings() (in module pypath.inputs.ddinter)": [[218, "pypath.inputs.ddinter.ddinter_mappings"]], "ddinter_n_drugs() (in module pypath.inputs.ddinter)": [[219, "pypath.inputs.ddinter.ddinter_n_drugs"]], "pypath.inputs.deathdomain": [[220, "module-pypath.inputs.deathdomain"]], "deathdomain_interactions() (in module pypath.inputs.deathdomain)": [[221, "pypath.inputs.deathdomain.deathdomain_interactions"]], "deathdomain_interactions_rescued() (in module pypath.inputs.deathdomain)": [[222, "pypath.inputs.deathdomain.deathdomain_interactions_rescued"]], "pypath.inputs.depod": [[223, "module-pypath.inputs.depod"]], "depod_enzyme_substrate() (in module pypath.inputs.depod)": [[224, "pypath.inputs.depod.depod_enzyme_substrate"]], "depod_interactions() (in module pypath.inputs.depod)": [[225, "pypath.inputs.depod.depod_interactions"]], "pypath.inputs.dgidb": [[226, "module-pypath.inputs.dgidb"]], "dgidb_annotations() (in module pypath.inputs.dgidb)": [[227, "pypath.inputs.dgidb.dgidb_annotations"]], "dgidb_interactions() (in module pypath.inputs.dgidb)": [[228, "pypath.inputs.dgidb.dgidb_interactions"]], "get_dgidb_old() (in module pypath.inputs.dgidb)": [[229, "pypath.inputs.dgidb.get_dgidb_old"]], "pypath.inputs.dip": [[230, "module-pypath.inputs.dip"]], "dip_interactions() (in module pypath.inputs.dip)": [[231, "pypath.inputs.dip.dip_interactions"]], "dip_login() (in module pypath.inputs.dip)": [[232, "pypath.inputs.dip.dip_login"]], "pypath.inputs.diseases": [[233, "module-pypath.inputs.diseases"]], "diseases_general() (in module pypath.inputs.diseases)": [[234, "pypath.inputs.diseases.diseases_general"]], "experiments_filtered() (in module pypath.inputs.diseases)": [[235, "pypath.inputs.diseases.experiments_filtered"]], "experiments_full() (in module pypath.inputs.diseases)": [[236, "pypath.inputs.diseases.experiments_full"]], "knowledge_filtered() (in module pypath.inputs.diseases)": [[237, "pypath.inputs.diseases.knowledge_filtered"]], "knowledge_full() (in module pypath.inputs.diseases)": [[238, "pypath.inputs.diseases.knowledge_full"]], "textmining_filtered() (in module pypath.inputs.diseases)": [[239, "pypath.inputs.diseases.textmining_filtered"]], "textmining_full() (in module pypath.inputs.diseases)": [[240, "pypath.inputs.diseases.textmining_full"]], "pypath.inputs.domino": [[241, "module-pypath.inputs.domino"]], "domino_ddi() (in module pypath.inputs.domino)": [[242, "pypath.inputs.domino.domino_ddi"]], "domino_enzsub() (in module pypath.inputs.domino)": [[243, "pypath.inputs.domino.domino_enzsub"]], "domino_interactions() (in module pypath.inputs.domino)": [[244, "pypath.inputs.domino.domino_interactions"]], "get_domino() (in module pypath.inputs.domino)": [[245, "pypath.inputs.domino.get_domino"]], "pypath.inputs.dorothea": [[246, "module-pypath.inputs.dorothea"]], "dorotheainteraction (class in pypath.inputs.dorothea)": [[247, "pypath.inputs.dorothea.DorotheaInteraction"]], "__init__() (pypath.inputs.dorothea.dorotheainteraction method)": [[247, "pypath.inputs.dorothea.DorotheaInteraction.__init__"]], "all_sources (pypath.inputs.dorothea.dorotheainteraction attribute)": [[247, "pypath.inputs.dorothea.DorotheaInteraction.all_sources"]], "chipseq (pypath.inputs.dorothea.dorotheainteraction attribute)": [[247, "pypath.inputs.dorothea.DorotheaInteraction.chipseq"]], "chipseq_sources (pypath.inputs.dorothea.dorotheainteraction attribute)": [[247, "pypath.inputs.dorothea.DorotheaInteraction.chipseq_sources"]], "coexp (pypath.inputs.dorothea.dorotheainteraction attribute)": [[247, "pypath.inputs.dorothea.DorotheaInteraction.coexp"]], "coexp_sources (pypath.inputs.dorothea.dorotheainteraction attribute)": [[247, "pypath.inputs.dorothea.DorotheaInteraction.coexp_sources"]], "count() (pypath.inputs.dorothea.dorotheainteraction method)": [[247, "pypath.inputs.dorothea.DorotheaInteraction.count"]], "curated (pypath.inputs.dorothea.dorotheainteraction attribute)": [[247, "pypath.inputs.dorothea.DorotheaInteraction.curated"]], "curated_sources (pypath.inputs.dorothea.dorotheainteraction attribute)": [[247, "pypath.inputs.dorothea.DorotheaInteraction.curated_sources"]], "effect (pypath.inputs.dorothea.dorotheainteraction attribute)": [[247, "pypath.inputs.dorothea.DorotheaInteraction.effect"]], "index() (pypath.inputs.dorothea.dorotheainteraction method)": [[247, "pypath.inputs.dorothea.DorotheaInteraction.index"]], "kegg_pathways (pypath.inputs.dorothea.dorotheainteraction attribute)": [[247, "pypath.inputs.dorothea.DorotheaInteraction.kegg_pathways"]], "level (pypath.inputs.dorothea.dorotheainteraction attribute)": [[247, "pypath.inputs.dorothea.DorotheaInteraction.level"]], "predicted (pypath.inputs.dorothea.dorotheainteraction attribute)": [[247, "pypath.inputs.dorothea.DorotheaInteraction.predicted"]], "predicted_sources (pypath.inputs.dorothea.dorotheainteraction attribute)": [[247, "pypath.inputs.dorothea.DorotheaInteraction.predicted_sources"]], "pubmed (pypath.inputs.dorothea.dorotheainteraction attribute)": [[247, "pypath.inputs.dorothea.DorotheaInteraction.pubmed"]], "target (pypath.inputs.dorothea.dorotheainteraction attribute)": [[247, "pypath.inputs.dorothea.DorotheaInteraction.target"]], "tf (pypath.inputs.dorothea.dorotheainteraction attribute)": [[247, "pypath.inputs.dorothea.DorotheaInteraction.tf"]], "dorothea_full_raw() (in module pypath.inputs.dorothea)": [[248, "pypath.inputs.dorothea.dorothea_full_raw"]], "dorothea_interactions() (in module pypath.inputs.dorothea)": [[249, "pypath.inputs.dorothea.dorothea_interactions"]], "dorothea_interactions_old() (in module pypath.inputs.dorothea)": [[250, "pypath.inputs.dorothea.dorothea_interactions_old"]], "dorothea_old_csv() (in module pypath.inputs.dorothea)": [[251, "pypath.inputs.dorothea.dorothea_old_csv"]], "dorothea_rda_raw() (in module pypath.inputs.dorothea)": [[252, "pypath.inputs.dorothea.dorothea_rda_raw"]], "get_dorothea_old() (in module pypath.inputs.dorothea)": [[253, "pypath.inputs.dorothea.get_dorothea_old"]], "get_tfregulons() (in module pypath.inputs.dorothea)": [[254, "pypath.inputs.dorothea.get_tfregulons"]], "tfregulons_interactions() (in module pypath.inputs.dorothea)": [[255, "pypath.inputs.dorothea.tfregulons_interactions"]], "tfregulons_interactions_old() (in module pypath.inputs.dorothea)": [[256, "pypath.inputs.dorothea.tfregulons_interactions_old"]], "pypath.inputs.drugbank": [[257, "module-pypath.inputs.drugbank"]], "drugbankfull (class in pypath.inputs.drugbank)": [[258, "pypath.inputs.drugbank.DrugbankFull"]], "__init__() (pypath.inputs.drugbank.drugbankfull method)": [[258, "pypath.inputs.drugbank.DrugbankFull.__init__"]], "drugbank_drugs_full() (pypath.inputs.drugbank.drugbankfull method)": [[258, "pypath.inputs.drugbank.DrugbankFull.drugbank_drugs_full"]], "drugbank_external_ids_full() (pypath.inputs.drugbank.drugbankfull method)": [[258, "pypath.inputs.drugbank.DrugbankFull.drugbank_external_ids_full"]], "drugbank_properties_full() (pypath.inputs.drugbank.drugbankfull method)": [[258, "pypath.inputs.drugbank.DrugbankFull.drugbank_properties_full"]], "drugbank_targets_full() (pypath.inputs.drugbank.drugbankfull method)": [[258, "pypath.inputs.drugbank.DrugbankFull.drugbank_targets_full"]], "drugbank_annotations() (in module pypath.inputs.drugbank)": [[259, "pypath.inputs.drugbank.drugbank_annotations"]], "drugbank_drugs() (in module pypath.inputs.drugbank)": [[260, "pypath.inputs.drugbank.drugbank_drugs"]], "drugbank_interactions() (in module pypath.inputs.drugbank)": [[261, "pypath.inputs.drugbank.drugbank_interactions"]], "drugbank_mapping() (in module pypath.inputs.drugbank)": [[262, "pypath.inputs.drugbank.drugbank_mapping"]], "drugbank_raw_interactions() (in module pypath.inputs.drugbank)": [[263, "pypath.inputs.drugbank.drugbank_raw_interactions"]], "pypath.inputs.drugcentral": [[264, "module-pypath.inputs.drugcentral"]], "drugcentral_drugs() (in module pypath.inputs.drugcentral)": [[265, "pypath.inputs.drugcentral.drugcentral_drugs"]], "drugcentral_interactions() (in module pypath.inputs.drugcentral)": [[266, "pypath.inputs.drugcentral.drugcentral_interactions"]], "drugcentral_mapping() (in module pypath.inputs.drugcentral)": [[267, "pypath.inputs.drugcentral.drugcentral_mapping"]], "pypath.inputs.ebi": [[268, "module-pypath.inputs.ebi"]], "ebi_rest() (in module pypath.inputs.ebi)": [[269, "pypath.inputs.ebi.ebi_rest"]], "pypath.inputs.elm": [[270, "module-pypath.inputs.elm"]], "elm_classes() (in module pypath.inputs.elm)": [[271, "pypath.inputs.elm.elm_classes"]], "elm_domains() (in module pypath.inputs.elm)": [[272, "pypath.inputs.elm.elm_domains"]], "elm_instances() (in module pypath.inputs.elm)": [[273, "pypath.inputs.elm.elm_instances"]], "elm_interactions() (in module pypath.inputs.elm)": [[274, "pypath.inputs.elm.elm_interactions"]], "pypath.inputs.embopress": [[275, "module-pypath.inputs.embopress"]], "embopress_supplementary() (in module pypath.inputs.embopress)": [[276, "pypath.inputs.embopress.embopress_supplementary"]], "pypath.inputs.embrace": [[277, "module-pypath.inputs.embrace"]], "embrace_annotations() (in module pypath.inputs.embrace)": [[278, "pypath.inputs.embrace.embrace_annotations"]], "embrace_interactions() (in module pypath.inputs.embrace)": [[279, "pypath.inputs.embrace.embrace_interactions"]], "embrace_raw() (in module pypath.inputs.embrace)": [[280, "pypath.inputs.embrace.embrace_raw"]], "embrace_translated() (in module pypath.inputs.embrace)": [[281, "pypath.inputs.embrace.embrace_translated"]], "pypath.inputs.encode": [[282, "module-pypath.inputs.encode"]], "encode_tf_mirna_interactions() (in module pypath.inputs.encode)": [[283, "pypath.inputs.encode.encode_tf_mirna_interactions"]], "pypath.inputs.ensembl": [[284, "module-pypath.inputs.ensembl"]], "ensembl_organisms() (in module pypath.inputs.ensembl)": [[285, "pypath.inputs.ensembl.ensembl_organisms"]], "pypath.inputs.eutils": [[286, "module-pypath.inputs.eutils"]], "esummary() (in module pypath.inputs.eutils)": [[287, "pypath.inputs.eutils.esummary"]], "pypath.inputs.exocarta": [[288, "module-pypath.inputs.exocarta"]], "get_exocarta() (in module pypath.inputs.exocarta)": [[289, "pypath.inputs.exocarta.get_exocarta"]], "get_vesiclepedia() (in module pypath.inputs.exocarta)": [[290, "pypath.inputs.exocarta.get_vesiclepedia"]], "pypath.inputs.expasy": [[291, "module-pypath.inputs.expasy"]], "expasy_enzyme_classes() (in module pypath.inputs.expasy)": [[292, "pypath.inputs.expasy.expasy_enzyme_classes"]], "expasy_enzymes() (in module pypath.inputs.expasy)": [[293, "pypath.inputs.expasy.expasy_enzymes"]], "pypath.inputs.genecards": [[294, "module-pypath.inputs.genecards"]], "genecards_datasheet() (in module pypath.inputs.genecards)": [[295, "pypath.inputs.genecards.genecards_datasheet"]], "genecards_soup() (in module pypath.inputs.genecards)": [[296, "pypath.inputs.genecards.genecards_soup"]], "genecards_summaries() (in module pypath.inputs.genecards)": [[297, "pypath.inputs.genecards.genecards_summaries"]], "get_method() (in module pypath.inputs)": [[298, "pypath.inputs.get_method"]], "pypath.inputs.go": [[299, "module-pypath.inputs.go"]], "get_go_desc() (in module pypath.inputs.go)": [[300, "pypath.inputs.go.get_go_desc"]], "get_go_quick() (in module pypath.inputs.go)": [[301, "pypath.inputs.go.get_go_quick"]], "get_goslim() (in module pypath.inputs.go)": [[302, "pypath.inputs.go.get_goslim"]], "go_ancestors() (in module pypath.inputs.go)": [[303, "pypath.inputs.go.go_ancestors"]], "go_ancestors_goose() (in module pypath.inputs.go)": [[304, "pypath.inputs.go.go_ancestors_goose"]], "go_ancestors_quickgo() (in module pypath.inputs.go)": [[305, "pypath.inputs.go.go_ancestors_quickgo"]], "go_annotations() (in module pypath.inputs.go)": [[306, "pypath.inputs.go.go_annotations"]], "go_annotations_all() (in module pypath.inputs.go)": [[307, "pypath.inputs.go.go_annotations_all"]], "go_annotations_goa() (in module pypath.inputs.go)": [[308, "pypath.inputs.go.go_annotations_goa"]], "go_annotations_goose() (in module pypath.inputs.go)": [[309, "pypath.inputs.go.go_annotations_goose"]], "go_annotations_quickgo() (in module pypath.inputs.go)": [[310, "pypath.inputs.go.go_annotations_quickgo"]], "go_annotations_solr() (in module pypath.inputs.go)": [[311, "pypath.inputs.go.go_annotations_solr"]], "go_annotations_uniprot() (in module pypath.inputs.go)": [[312, "pypath.inputs.go.go_annotations_uniprot"]], "go_descendants() (in module pypath.inputs.go)": [[313, "pypath.inputs.go.go_descendants"]], "go_descendants_goose() (in module pypath.inputs.go)": [[314, "pypath.inputs.go.go_descendants_goose"]], "go_descendants_quickgo() (in module pypath.inputs.go)": [[315, "pypath.inputs.go.go_descendants_quickgo"]], "go_descendants_to_ancestors() (in module pypath.inputs.go)": [[316, "pypath.inputs.go.go_descendants_to_ancestors"]], "go_terms() (in module pypath.inputs.go)": [[317, "pypath.inputs.go.go_terms"]], "go_terms_goose() (in module pypath.inputs.go)": [[318, "pypath.inputs.go.go_terms_goose"]], "go_terms_quickgo() (in module pypath.inputs.go)": [[319, "pypath.inputs.go.go_terms_quickgo"]], "go_terms_solr() (in module pypath.inputs.go)": [[320, "pypath.inputs.go.go_terms_solr"]], "pypath.inputs.gpcrdb": [[321, "module-pypath.inputs.gpcrdb"]], "gpcrdb_annotations() (in module pypath.inputs.gpcrdb)": [[322, "pypath.inputs.gpcrdb.gpcrdb_annotations"]], "pypath.inputs.graphviz": [[323, "module-pypath.inputs.graphviz"]], "graphviz_attrs() (in module pypath.inputs.graphviz)": [[324, "pypath.inputs.graphviz.graphviz_attrs"]], "pypath.inputs.guide2pharma": [[325, "module-pypath.inputs.guide2pharma"]], "guide2pharma_complexes() (in module pypath.inputs.guide2pharma)": [[326, "pypath.inputs.guide2pharma.guide2pharma_complexes"]], "guide2pharma_download() (in module pypath.inputs.guide2pharma)": [[327, "pypath.inputs.guide2pharma.guide2pharma_download"]], "guide2pharma_interactions() (in module pypath.inputs.guide2pharma)": [[328, "pypath.inputs.guide2pharma.guide2pharma_interactions"]], "pypath.inputs.gutmgene": [[329, "module-pypath.inputs.gutmgene"]], "gutmgeneannotation (class in pypath.inputs.gutmgene)": [[330, "pypath.inputs.gutmgene.GutmgeneAnnotation"]], "__init__() (pypath.inputs.gutmgene.gutmgeneannotation method)": [[330, "pypath.inputs.gutmgene.GutmgeneAnnotation.__init__"]], "classification (pypath.inputs.gutmgene.gutmgeneannotation attribute)": [[330, "pypath.inputs.gutmgene.GutmgeneAnnotation.classification"]], "count() (pypath.inputs.gutmgene.gutmgeneannotation method)": [[330, "pypath.inputs.gutmgene.GutmgeneAnnotation.count"]], "effect (pypath.inputs.gutmgene.gutmgeneannotation attribute)": [[330, "pypath.inputs.gutmgene.GutmgeneAnnotation.effect"]], "gut_microbiota_id (pypath.inputs.gutmgene.gutmgeneannotation attribute)": [[330, "pypath.inputs.gutmgene.GutmgeneAnnotation.gut_microbiota_id"]], "index() (pypath.inputs.gutmgene.gutmgeneannotation method)": [[330, "pypath.inputs.gutmgene.GutmgeneAnnotation.index"]], "microbe_ncbi_tax_id (pypath.inputs.gutmgene.gutmgeneannotation attribute)": [[330, "pypath.inputs.gutmgene.GutmgeneAnnotation.microbe_ncbi_tax_id"]], "microbe_taxon (pypath.inputs.gutmgene.gutmgeneannotation attribute)": [[330, "pypath.inputs.gutmgene.GutmgeneAnnotation.microbe_taxon"]], "throughput (pypath.inputs.gutmgene.gutmgeneannotation attribute)": [[330, "pypath.inputs.gutmgene.GutmgeneAnnotation.throughput"]], "gutmgeneraw (class in pypath.inputs.gutmgene)": [[331, "pypath.inputs.gutmgene.GutmgeneRaw"]], "__init__() (pypath.inputs.gutmgene.gutmgeneraw method)": [[331, "pypath.inputs.gutmgene.GutmgeneRaw.__init__"]], "classification (pypath.inputs.gutmgene.gutmgeneraw attribute)": [[331, "pypath.inputs.gutmgene.GutmgeneRaw.classification"]], "count() (pypath.inputs.gutmgene.gutmgeneraw method)": [[331, "pypath.inputs.gutmgene.GutmgeneRaw.count"]], "effect (pypath.inputs.gutmgene.gutmgeneraw attribute)": [[331, "pypath.inputs.gutmgene.GutmgeneRaw.effect"]], "entrez (pypath.inputs.gutmgene.gutmgeneraw attribute)": [[331, "pypath.inputs.gutmgene.GutmgeneRaw.entrez"]], "genesymbol (pypath.inputs.gutmgene.gutmgeneraw attribute)": [[331, "pypath.inputs.gutmgene.GutmgeneRaw.genesymbol"]], "gut_microbiota_id (pypath.inputs.gutmgene.gutmgeneraw attribute)": [[331, "pypath.inputs.gutmgene.GutmgeneRaw.gut_microbiota_id"]], "index() (pypath.inputs.gutmgene.gutmgeneraw method)": [[331, "pypath.inputs.gutmgene.GutmgeneRaw.index"]], "microbe_ncbi_tax_id (pypath.inputs.gutmgene.gutmgeneraw attribute)": [[331, "pypath.inputs.gutmgene.GutmgeneRaw.microbe_ncbi_tax_id"]], "microbe_taxon (pypath.inputs.gutmgene.gutmgeneraw attribute)": [[331, "pypath.inputs.gutmgene.GutmgeneRaw.microbe_taxon"]], "throughput (pypath.inputs.gutmgene.gutmgeneraw attribute)": [[331, "pypath.inputs.gutmgene.GutmgeneRaw.throughput"]], "gutmgene_annotations() (in module pypath.inputs.gutmgene)": [[332, "pypath.inputs.gutmgene.gutmgene_annotations"]], "gutmgene_raw() (in module pypath.inputs.gutmgene)": [[333, "pypath.inputs.gutmgene.gutmgene_raw"]], "pypath.inputs.havugimana": [[334, "module-pypath.inputs.havugimana"]], "get_havugimana() (in module pypath.inputs.havugimana)": [[335, "pypath.inputs.havugimana.get_havugimana"]], "havugimana_complexes() (in module pypath.inputs.havugimana)": [[336, "pypath.inputs.havugimana.havugimana_complexes"]], "pypath.inputs.hgnc": [[337, "module-pypath.inputs.hgnc"]], "hgnc_genegroups() (in module pypath.inputs.hgnc)": [[338, "pypath.inputs.hgnc.hgnc_genegroups"]], "pypath.inputs.hippie": [[339, "module-pypath.inputs.hippie"]], "hippie_interactions() (in module pypath.inputs.hippie)": [[340, "pypath.inputs.hippie.hippie_interactions"]], "pypath.inputs.hmdb": [[341, "module-pypath.inputs.hmdb"]], "pypath.inputs.hmdb.common": [[342, "module-pypath.inputs.hmdb.common"]], "iter() (in module pypath.inputs.hmdb.common)": [[343, "pypath.inputs.hmdb.common.iter"]], "mapping() (in module pypath.inputs.hmdb.common)": [[344, "pypath.inputs.hmdb.common.mapping"]], "raw() (in module pypath.inputs.hmdb.common)": [[345, "pypath.inputs.hmdb.common.raw"]], "table() (in module pypath.inputs.hmdb.common)": [[346, "pypath.inputs.hmdb.common.table"]], "pypath.inputs.hmdb.metabolites": [[347, "module-pypath.inputs.hmdb.metabolites"]], "iter() (in module pypath.inputs.hmdb.metabolites)": [[348, "pypath.inputs.hmdb.metabolites.iter"]], "mapping() (in module pypath.inputs.hmdb.metabolites)": [[349, "pypath.inputs.hmdb.metabolites.mapping"]], "raw() (in module pypath.inputs.hmdb.metabolites)": [[350, "pypath.inputs.hmdb.metabolites.raw"]], "table() (in module pypath.inputs.hmdb.metabolites)": [[351, "pypath.inputs.hmdb.metabolites.table"]], "pypath.inputs.hmdb.proteins": [[352, "module-pypath.inputs.hmdb.proteins"]], "iter() (in module pypath.inputs.hmdb.proteins)": [[353, "pypath.inputs.hmdb.proteins.iter"]], "mapping() (in module pypath.inputs.hmdb.proteins)": [[354, "pypath.inputs.hmdb.proteins.mapping"]], "raw() (in module pypath.inputs.hmdb.proteins)": [[355, "pypath.inputs.hmdb.proteins.raw"]], "table() (in module pypath.inputs.hmdb.proteins)": [[356, "pypath.inputs.hmdb.proteins.table"]], "pypath.inputs.hmdb.schema": [[357, "module-pypath.inputs.hmdb.schema"]], "pypath.inputs.hmdb.schema.common": [[358, "module-pypath.inputs.hmdb.schema.common"]], "field (class in pypath.inputs.hmdb.schema.common)": [[359, "pypath.inputs.hmdb.schema.common.Field"]], "__init__() (pypath.inputs.hmdb.schema.common.field method)": [[359, "pypath.inputs.hmdb.schema.common.Field.__init__"]], "pypath.inputs.hmdb.schema.metabolites": [[360, "module-pypath.inputs.hmdb.schema.metabolites"]], "pypath.inputs.hmdb.schema.proteins": [[361, "module-pypath.inputs.hmdb.schema.proteins"]], "pypath.inputs.hmdb.structures": [[362, "module-pypath.inputs.hmdb.structures"]], "sdf() (in module pypath.inputs.hmdb.structures)": [[363, "pypath.inputs.hmdb.structures.sdf"]], "pypath.inputs.hmdb.visual": [[364, "module-pypath.inputs.hmdb.visual"]], "show_structure() (in module pypath.inputs.hmdb.visual)": [[365, "pypath.inputs.hmdb.visual.show_structure"]], "structure_svg() (in module pypath.inputs.hmdb.visual)": [[366, "pypath.inputs.hmdb.visual.structure_svg"]], "pypath.inputs.hmdb.xml": [[367, "module-pypath.inputs.hmdb.xml"]], "hmdb_xml() (in module pypath.inputs.hmdb.xml)": [[368, "pypath.inputs.hmdb.xml.hmdb_xml"]], "pypath.inputs.homologene": [[369, "module-pypath.inputs.homologene"]], "get_homologene() (in module pypath.inputs.homologene)": [[370, "pypath.inputs.homologene.get_homologene"]], "homologene_dict() (in module pypath.inputs.homologene)": [[371, "pypath.inputs.homologene.homologene_dict"]], "homologene_uniprot_dict() (in module pypath.inputs.homologene)": [[372, "pypath.inputs.homologene.homologene_uniprot_dict"]], "pypath.inputs.hpmr": [[373, "module-pypath.inputs.hpmr"]], "hpmrinteraction (class in pypath.inputs.hpmr)": [[374, "pypath.inputs.hpmr.HpmrInteraction"]], "__init__() (pypath.inputs.hpmr.hpmrinteraction method)": [[374, "pypath.inputs.hpmr.HpmrInteraction.__init__"]], "count() (pypath.inputs.hpmr.hpmrinteraction method)": [[374, "pypath.inputs.hpmr.HpmrInteraction.count"]], "index() (pypath.inputs.hpmr.hpmrinteraction method)": [[374, "pypath.inputs.hpmr.HpmrInteraction.index"]], "partner (pypath.inputs.hpmr.hpmrinteraction attribute)": [[374, "pypath.inputs.hpmr.HpmrInteraction.partner"]], "partner_role (pypath.inputs.hpmr.hpmrinteraction attribute)": [[374, "pypath.inputs.hpmr.HpmrInteraction.partner_role"]], "receptor (pypath.inputs.hpmr.hpmrinteraction attribute)": [[374, "pypath.inputs.hpmr.HpmrInteraction.receptor"]], "references (pypath.inputs.hpmr.hpmrinteraction attribute)": [[374, "pypath.inputs.hpmr.HpmrInteraction.references"]], "unambiguous (pypath.inputs.hpmr.hpmrinteraction attribute)": [[374, "pypath.inputs.hpmr.HpmrInteraction.unambiguous"]], "get_hpmr() (in module pypath.inputs.hpmr)": [[375, "pypath.inputs.hpmr.get_hpmr"]], "hpmr_annotations() (in module pypath.inputs.hpmr)": [[376, "pypath.inputs.hpmr.hpmr_annotations"]], "hpmr_complexes() (in module pypath.inputs.hpmr)": [[377, "pypath.inputs.hpmr.hpmr_complexes"]], "hpmr_interactions() (in module pypath.inputs.hpmr)": [[378, "pypath.inputs.hpmr.hpmr_interactions"]], "pypath.inputs.hpo": [[379, "module-pypath.inputs.hpo"]], "hpo_annotations() (in module pypath.inputs.hpo)": [[380, "pypath.inputs.hpo.hpo_annotations"]], "hpo_diseases() (in module pypath.inputs.hpo)": [[381, "pypath.inputs.hpo.hpo_diseases"]], "hpo_ontology() (in module pypath.inputs.hpo)": [[382, "pypath.inputs.hpo.hpo_ontology"]], "hpo_terms() (in module pypath.inputs.hpo)": [[383, "pypath.inputs.hpo.hpo_terms"]], "pypath.inputs.hprd": [[384, "module-pypath.inputs.hprd"]], "get_hprd() (in module pypath.inputs.hprd)": [[385, "pypath.inputs.hprd.get_hprd"]], "hprd_enzyme_substrate() (in module pypath.inputs.hprd)": [[386, "pypath.inputs.hprd.hprd_enzyme_substrate"]], "hprd_interactions() (in module pypath.inputs.hprd)": [[387, "pypath.inputs.hprd.hprd_interactions"]], "hprd_interactions_htp() (in module pypath.inputs.hprd)": [[388, "pypath.inputs.hprd.hprd_interactions_htp"]], "pypath.inputs.htri": [[389, "module-pypath.inputs.htri"]], "htri_interactions() (in module pypath.inputs.htri)": [[390, "pypath.inputs.htri.htri_interactions"]], "pypath.inputs.humancellmap": [[391, "module-pypath.inputs.humancellmap"]], "humancellmap_annotations() (in module pypath.inputs.humancellmap)": [[392, "pypath.inputs.humancellmap.humancellmap_annotations"]], "pypath.inputs.humap": [[393, "module-pypath.inputs.humap"]], "humap2_complexes() (in module pypath.inputs.humap)": [[394, "pypath.inputs.humap.humap2_complexes"]], "humap_complexes() (in module pypath.inputs.humap)": [[395, "pypath.inputs.humap.humap_complexes"]], "pypath.inputs.humsavar": [[396, "module-pypath.inputs.humsavar"]], "uniprot_variants() (in module pypath.inputs.humsavar)": [[397, "pypath.inputs.humsavar.uniprot_variants"]], "pypath.inputs.huri": [[398, "module-pypath.inputs.huri"]], "hi_i_interactions() (in module pypath.inputs.huri)": [[399, "pypath.inputs.huri.hi_i_interactions"]], "hi_ii_interactions() (in module pypath.inputs.huri)": [[400, "pypath.inputs.huri.hi_ii_interactions"]], "hi_iii_old() (in module pypath.inputs.huri)": [[401, "pypath.inputs.huri.hi_iii_old"]], "hi_union_interactions() (in module pypath.inputs.huri)": [[402, "pypath.inputs.huri.hi_union_interactions"]], "huri_interactions() (in module pypath.inputs.huri)": [[403, "pypath.inputs.huri.huri_interactions"]], "lit_bm_13_interactions() (in module pypath.inputs.huri)": [[404, "pypath.inputs.huri.lit_bm_13_interactions"]], "lit_bm_17_interactions() (in module pypath.inputs.huri)": [[405, "pypath.inputs.huri.lit_bm_17_interactions"]], "lit_bm_interactions() (in module pypath.inputs.huri)": [[406, "pypath.inputs.huri.lit_bm_interactions"]], "rolland_hi_ii_14() (in module pypath.inputs.huri)": [[407, "pypath.inputs.huri.rolland_hi_ii_14"]], "vidal_hi_iii_old() (in module pypath.inputs.huri)": [[408, "pypath.inputs.huri.vidal_hi_iii_old"]], "yang2016_interactions() (in module pypath.inputs.huri)": [[409, "pypath.inputs.huri.yang2016_interactions"]], "yu2011_interactions() (in module pypath.inputs.huri)": [[410, "pypath.inputs.huri.yu2011_interactions"]], "pypath.inputs.i3d": [[411, "module-pypath.inputs.i3d"]], "get_i3d() (in module pypath.inputs.i3d)": [[412, "pypath.inputs.i3d.get_i3d"]], "pypath.inputs.icellnet": [[413, "module-pypath.inputs.icellnet"]], "icellnetrecord (class in pypath.inputs.icellnet)": [[414, "pypath.inputs.icellnet.IcellnetRecord"]], "__init__() (pypath.inputs.icellnet.icellnetrecord method)": [[414, "pypath.inputs.icellnet.IcellnetRecord.__init__"]], "classification (pypath.inputs.icellnet.icellnetrecord attribute)": [[414, "pypath.inputs.icellnet.IcellnetRecord.classification"]], "count() (pypath.inputs.icellnet.icellnetrecord method)": [[414, "pypath.inputs.icellnet.IcellnetRecord.count"]], "family (pypath.inputs.icellnet.icellnetrecord attribute)": [[414, "pypath.inputs.icellnet.IcellnetRecord.family"]], "index() (pypath.inputs.icellnet.icellnetrecord method)": [[414, "pypath.inputs.icellnet.IcellnetRecord.index"]], "ligand (pypath.inputs.icellnet.icellnetrecord attribute)": [[414, "pypath.inputs.icellnet.IcellnetRecord.ligand"]], "receptor (pypath.inputs.icellnet.icellnetrecord attribute)": [[414, "pypath.inputs.icellnet.IcellnetRecord.receptor"]], "references (pypath.inputs.icellnet.icellnetrecord attribute)": [[414, "pypath.inputs.icellnet.IcellnetRecord.references"]], "resources (pypath.inputs.icellnet.icellnetrecord attribute)": [[414, "pypath.inputs.icellnet.IcellnetRecord.resources"]], "subfamily (pypath.inputs.icellnet.icellnetrecord attribute)": [[414, "pypath.inputs.icellnet.IcellnetRecord.subfamily"]], "icellnet_annotations() (in module pypath.inputs.icellnet)": [[415, "pypath.inputs.icellnet.icellnet_annotations"]], "icellnet_complexes() (in module pypath.inputs.icellnet)": [[416, "pypath.inputs.icellnet.icellnet_complexes"]], "icellnet_interactions() (in module pypath.inputs.icellnet)": [[417, "pypath.inputs.icellnet.icellnet_interactions"]], "pypath.inputs.ielm": [[418, "module-pypath.inputs.ielm"]], "get_ielm() (in module pypath.inputs.ielm)": [[419, "pypath.inputs.ielm.get_ielm"]], "get_ielm_huge() (in module pypath.inputs.ielm)": [[420, "pypath.inputs.ielm.get_ielm_huge"]], "pypath.inputs.imweb": [[421, "module-pypath.inputs.imweb"]], "get_imweb() (in module pypath.inputs.imweb)": [[422, "pypath.inputs.imweb.get_imweb"]], "get_imweb_req() (in module pypath.inputs.imweb)": [[423, "pypath.inputs.imweb.get_imweb_req"]], "pypath.inputs.innatedb": [[424, "module-pypath.inputs.innatedb"]], "innatedb_interactions() (in module pypath.inputs.innatedb)": [[425, "pypath.inputs.innatedb.innatedb_interactions"]], "pypath.inputs.instruct": [[426, "module-pypath.inputs.instruct"]], "get_instruct() (in module pypath.inputs.instruct)": [[427, "pypath.inputs.instruct.get_instruct"]], "get_instruct_offsets() (in module pypath.inputs.instruct)": [[428, "pypath.inputs.instruct.get_instruct_offsets"]], "pypath.inputs.intact": [[429, "module-pypath.inputs.intact"]], "intact_interactions() (in module pypath.inputs.intact)": [[430, "pypath.inputs.intact.intact_interactions"]], "pypath.inputs.integrins": [[431, "module-pypath.inputs.integrins"]], "get_integrins() (in module pypath.inputs.integrins)": [[432, "pypath.inputs.integrins.get_integrins"]], "pypath.inputs.interpro": [[433, "module-pypath.inputs.interpro"]], "interpro2go_annotations() (in module pypath.inputs.interpro)": [[434, "pypath.inputs.interpro.interpro2go_annotations"]], "interpro_annotations() (in module pypath.inputs.interpro)": [[435, "pypath.inputs.interpro.interpro_annotations"]], "interpro_entries() (in module pypath.inputs.interpro)": [[436, "pypath.inputs.interpro.interpro_entries"]], "interpro_xrefs() (in module pypath.inputs.interpro)": [[437, "pypath.inputs.interpro.interpro_xrefs"]], "pypath.inputs.intogen": [[438, "module-pypath.inputs.intogen"]], "intogen_annotations() (in module pypath.inputs.intogen)": [[439, "pypath.inputs.intogen.intogen_annotations"]], "pypath.inputs.ipi": [[440, "module-pypath.inputs.ipi"]], "ipi_uniprot() (in module pypath.inputs.ipi)": [[441, "pypath.inputs.ipi.ipi_uniprot"]], "pypath.inputs.iptmnet": [[442, "module-pypath.inputs.iptmnet"]], "iptmnetinteraction (class in pypath.inputs.iptmnet)": [[443, "pypath.inputs.iptmnet.IptmnetInteraction"]], "__init__() (pypath.inputs.iptmnet.iptmnetinteraction method)": [[443, "pypath.inputs.iptmnet.IptmnetInteraction.__init__"]], "count() (pypath.inputs.iptmnet.iptmnetinteraction method)": [[443, "pypath.inputs.iptmnet.IptmnetInteraction.count"]], "enzyme (pypath.inputs.iptmnet.iptmnetinteraction attribute)": [[443, "pypath.inputs.iptmnet.IptmnetInteraction.enzyme"]], "enzyme_isoform (pypath.inputs.iptmnet.iptmnetinteraction attribute)": [[443, "pypath.inputs.iptmnet.IptmnetInteraction.enzyme_isoform"]], "index() (pypath.inputs.iptmnet.iptmnetinteraction method)": [[443, "pypath.inputs.iptmnet.IptmnetInteraction.index"]], "ptm_type (pypath.inputs.iptmnet.iptmnetinteraction attribute)": [[443, "pypath.inputs.iptmnet.IptmnetInteraction.ptm_type"]], "references (pypath.inputs.iptmnet.iptmnetinteraction attribute)": [[443, "pypath.inputs.iptmnet.IptmnetInteraction.references"]], "resaa (pypath.inputs.iptmnet.iptmnetinteraction attribute)": [[443, "pypath.inputs.iptmnet.IptmnetInteraction.resaa"]], "resnum (pypath.inputs.iptmnet.iptmnetinteraction attribute)": [[443, "pypath.inputs.iptmnet.IptmnetInteraction.resnum"]], "score (pypath.inputs.iptmnet.iptmnetinteraction attribute)": [[443, "pypath.inputs.iptmnet.IptmnetInteraction.score"]], "substrate (pypath.inputs.iptmnet.iptmnetinteraction attribute)": [[443, "pypath.inputs.iptmnet.IptmnetInteraction.substrate"]], "substrate_isoform (pypath.inputs.iptmnet.iptmnetinteraction attribute)": [[443, "pypath.inputs.iptmnet.IptmnetInteraction.substrate_isoform"]], "iptmnet_interactions() (in module pypath.inputs.iptmnet)": [[444, "pypath.inputs.iptmnet.iptmnet_interactions"]], "pypath.inputs.italk": [[445, "module-pypath.inputs.italk"]], "italk_annotations() (in module pypath.inputs.italk)": [[446, "pypath.inputs.italk.italk_annotations"]], "italk_interactions() (in module pypath.inputs.italk)": [[447, "pypath.inputs.italk.italk_interactions"]], "italk_raw() (in module pypath.inputs.italk)": [[448, "pypath.inputs.italk.italk_raw"]], "pypath.inputs.kea": [[449, "module-pypath.inputs.kea"]], "kea_enzyme_substrate() (in module pypath.inputs.kea)": [[450, "pypath.inputs.kea.kea_enzyme_substrate"]], "kea_interactions() (in module pypath.inputs.kea)": [[451, "pypath.inputs.kea.kea_interactions"]], "pypath.inputs.kegg": [[452, "module-pypath.inputs.kegg"]], "keggpathway (class in pypath.inputs.kegg)": [[453, "pypath.inputs.kegg.KeggPathway"]], "__init__() (pypath.inputs.kegg.keggpathway method)": [[453, "pypath.inputs.kegg.KeggPathway.__init__"]], "count() (pypath.inputs.kegg.keggpathway method)": [[453, "pypath.inputs.kegg.KeggPathway.count"]], "index() (pypath.inputs.kegg.keggpathway method)": [[453, "pypath.inputs.kegg.KeggPathway.index"]], "pathway (pypath.inputs.kegg.keggpathway attribute)": [[453, "pypath.inputs.kegg.KeggPathway.pathway"]], "kegg_dbget() (in module pypath.inputs.kegg)": [[454, "pypath.inputs.kegg.kegg_dbget"]], "kegg_interactions() (in module pypath.inputs.kegg)": [[455, "pypath.inputs.kegg.kegg_interactions"]], "kegg_medicus() (in module pypath.inputs.kegg)": [[456, "pypath.inputs.kegg.kegg_medicus"]], "kegg_medicus_complexes() (in module pypath.inputs.kegg)": [[457, "pypath.inputs.kegg.kegg_medicus_complexes"]], "kegg_medicus_interactions() (in module pypath.inputs.kegg)": [[458, "pypath.inputs.kegg.kegg_medicus_interactions"]], "kegg_pathway_annotations() (in module pypath.inputs.kegg)": [[459, "pypath.inputs.kegg.kegg_pathway_annotations"]], "kegg_pathway_annotations_pathwaycommons() (in module pypath.inputs.kegg)": [[460, "pypath.inputs.kegg.kegg_pathway_annotations_pathwaycommons"]], "kegg_pathways() (in module pypath.inputs.kegg)": [[461, "pypath.inputs.kegg.kegg_pathways"]], "pypath.inputs.kegg_api": [[462, "module-pypath.inputs.kegg_api"]], "disease_to_drug() (in module pypath.inputs.kegg_api)": [[463, "pypath.inputs.kegg_api.disease_to_drug"]], "disease_to_gene() (in module pypath.inputs.kegg_api)": [[464, "pypath.inputs.kegg_api.disease_to_gene"]], "disease_to_pathway() (in module pypath.inputs.kegg_api)": [[465, "pypath.inputs.kegg_api.disease_to_pathway"]], "drug_to_disease() (in module pypath.inputs.kegg_api)": [[466, "pypath.inputs.kegg_api.drug_to_disease"]], "drug_to_drug() (in module pypath.inputs.kegg_api)": [[467, "pypath.inputs.kegg_api.drug_to_drug"]], "drug_to_gene() (in module pypath.inputs.kegg_api)": [[468, "pypath.inputs.kegg_api.drug_to_gene"]], "drug_to_pathway() (in module pypath.inputs.kegg_api)": [[469, "pypath.inputs.kegg_api.drug_to_pathway"]], "gene_to_disease() (in module pypath.inputs.kegg_api)": [[470, "pypath.inputs.kegg_api.gene_to_disease"]], "gene_to_drug() (in module pypath.inputs.kegg_api)": [[471, "pypath.inputs.kegg_api.gene_to_drug"]], "gene_to_pathway() (in module pypath.inputs.kegg_api)": [[472, "pypath.inputs.kegg_api.gene_to_pathway"]], "kegg_drug_to_chebi() (in module pypath.inputs.kegg_api)": [[473, "pypath.inputs.kegg_api.kegg_drug_to_chebi"]], "kegg_gene_to_ncbi_geneid() (in module pypath.inputs.kegg_api)": [[474, "pypath.inputs.kegg_api.kegg_gene_to_ncbi_geneid"]], "kegg_gene_to_uniprot() (in module pypath.inputs.kegg_api)": [[475, "pypath.inputs.kegg_api.kegg_gene_to_uniprot"]], "pathway_to_disease() (in module pypath.inputs.kegg_api)": [[476, "pypath.inputs.kegg_api.pathway_to_disease"]], "pathway_to_drug() (in module pypath.inputs.kegg_api)": [[477, "pypath.inputs.kegg_api.pathway_to_drug"]], "pathway_to_gene() (in module pypath.inputs.kegg_api)": [[478, "pypath.inputs.kegg_api.pathway_to_gene"]], "pypath.inputs.kinasedotcom": [[479, "module-pypath.inputs.kinasedotcom"]], "kinasedotcom_annotations() (in module pypath.inputs.kinasedotcom)": [[480, "pypath.inputs.kinasedotcom.kinasedotcom_annotations"]], "pypath.inputs.kirouac2010": [[481, "module-pypath.inputs.kirouac2010"]], "kirouac2010_interactions() (in module pypath.inputs.kirouac2010)": [[482, "pypath.inputs.kirouac2010.kirouac2010_interactions"]], "pypath.inputs.lambert2018": [[483, "module-pypath.inputs.lambert2018"]], "lambert2018_annotations() (in module pypath.inputs.lambert2018)": [[484, "pypath.inputs.lambert2018.lambert2018_annotations"]], "lambert2018_s1_raw() (in module pypath.inputs.lambert2018)": [[485, "pypath.inputs.lambert2018.lambert2018_s1_raw"]], "pypath.inputs.laudanna": [[486, "module-pypath.inputs.laudanna"]], "laudanna_directions() (in module pypath.inputs.laudanna)": [[487, "pypath.inputs.laudanna.laudanna_directions"]], "laudanna_effects() (in module pypath.inputs.laudanna)": [[488, "pypath.inputs.laudanna.laudanna_effects"]], "pypath.inputs.li2012": [[489, "module-pypath.inputs.li2012"]], "get_li2012() (in module pypath.inputs.li2012)": [[490, "pypath.inputs.li2012.get_li2012"]], "li2012_dmi() (in module pypath.inputs.li2012)": [[491, "pypath.inputs.li2012.li2012_dmi"]], "li2012_enzyme_substrate() (in module pypath.inputs.li2012)": [[492, "pypath.inputs.li2012.li2012_enzyme_substrate"]], "li2012_interactions() (in module pypath.inputs.li2012)": [[493, "pypath.inputs.li2012.li2012_interactions"]], "pypath.inputs.lincs": [[494, "module-pypath.inputs.lincs"]], "lincs_compounds() (in module pypath.inputs.lincs)": [[495, "pypath.inputs.lincs.lincs_compounds"]], "pypath.inputs.lmpid": [[496, "module-pypath.inputs.lmpid"]], "lmpid_dmi() (in module pypath.inputs.lmpid)": [[497, "pypath.inputs.lmpid.lmpid_dmi"]], "lmpid_interactions() (in module pypath.inputs.lmpid)": [[498, "pypath.inputs.lmpid.lmpid_interactions"]], "load_lmpid() (in module pypath.inputs.lmpid)": [[499, "pypath.inputs.lmpid.load_lmpid"]], "pypath.inputs.lncdisease": [[500, "module-pypath.inputs.lncdisease"]], "lncdisease_interactions() (in module pypath.inputs.lncdisease)": [[501, "pypath.inputs.lncdisease.lncdisease_interactions"]], "pypath.inputs.lncrnadb": [[502, "module-pypath.inputs.lncrnadb"]], "lncrnadb_interactions() (in module pypath.inputs.lncrnadb)": [[503, "pypath.inputs.lncrnadb.lncrnadb_interactions"]], "pypath.inputs.locate": [[504, "module-pypath.inputs.locate"]], "locate_localizations() (in module pypath.inputs.locate)": [[505, "pypath.inputs.locate.locate_localizations"]], "pypath.inputs.lrdb": [[506, "module-pypath.inputs.lrdb"]], "lrdbannotation (class in pypath.inputs.lrdb)": [[507, "pypath.inputs.lrdb.LrdbAnnotation"]], "__init__() (pypath.inputs.lrdb.lrdbannotation method)": [[507, "pypath.inputs.lrdb.LrdbAnnotation.__init__"]], "cell_type (pypath.inputs.lrdb.lrdbannotation attribute)": [[507, "pypath.inputs.lrdb.LrdbAnnotation.cell_type"]], "count() (pypath.inputs.lrdb.lrdbannotation method)": [[507, "pypath.inputs.lrdb.LrdbAnnotation.count"]], "index() (pypath.inputs.lrdb.lrdbannotation method)": [[507, "pypath.inputs.lrdb.LrdbAnnotation.index"]], "references (pypath.inputs.lrdb.lrdbannotation attribute)": [[507, "pypath.inputs.lrdb.LrdbAnnotation.references"]], "role (pypath.inputs.lrdb.lrdbannotation attribute)": [[507, "pypath.inputs.lrdb.LrdbAnnotation.role"]], "sources (pypath.inputs.lrdb.lrdbannotation attribute)": [[507, "pypath.inputs.lrdb.LrdbAnnotation.sources"]], "lrdb_annotations() (in module pypath.inputs.lrdb)": [[508, "pypath.inputs.lrdb.lrdb_annotations"]], "lrdb_interactions() (in module pypath.inputs.lrdb)": [[509, "pypath.inputs.lrdb.lrdb_interactions"]], "pypath.inputs.macrophage": [[510, "module-pypath.inputs.macrophage"]], "macrophage_interactions() (in module pypath.inputs.macrophage)": [[511, "pypath.inputs.macrophage.macrophage_interactions"]], "pypath.inputs.main": [[512, "module-pypath.inputs.main"]], "pypath.inputs.matrisome": [[513, "module-pypath.inputs.matrisome"]], "matrisome_annotations() (in module pypath.inputs.matrisome)": [[514, "pypath.inputs.matrisome.matrisome_annotations"]], "pypath.inputs.matrixdb": [[515, "module-pypath.inputs.matrixdb"]], "matrixdb_annotations() (in module pypath.inputs.matrixdb)": [[516, "pypath.inputs.matrixdb.matrixdb_annotations"]], "matrixdb_ecm_proteins() (in module pypath.inputs.matrixdb)": [[517, "pypath.inputs.matrixdb.matrixdb_ecm_proteins"]], "matrixdb_interactions() (in module pypath.inputs.matrixdb)": [[518, "pypath.inputs.matrixdb.matrixdb_interactions"]], "matrixdb_membrane_proteins() (in module pypath.inputs.matrixdb)": [[519, "pypath.inputs.matrixdb.matrixdb_membrane_proteins"]], "matrixdb_secreted_proteins() (in module pypath.inputs.matrixdb)": [[520, "pypath.inputs.matrixdb.matrixdb_secreted_proteins"]], "pypath.inputs.mcam": [[521, "module-pypath.inputs.mcam"]], "mcam_cell_adhesion_molecules() (in module pypath.inputs.mcam)": [[522, "pypath.inputs.mcam.mcam_cell_adhesion_molecules"]], "pypath.inputs.membranome": [[523, "module-pypath.inputs.membranome"]], "membranome_annotations() (in module pypath.inputs.membranome)": [[524, "pypath.inputs.membranome.membranome_annotations"]], "pypath.inputs.mimp": [[525, "module-pypath.inputs.mimp"]], "get_kinase_class() (in module pypath.inputs.mimp)": [[526, "pypath.inputs.mimp.get_kinase_class"]], "mimp_enzyme_substrate() (in module pypath.inputs.mimp)": [[527, "pypath.inputs.mimp.mimp_enzyme_substrate"]], "mimp_interactions() (in module pypath.inputs.mimp)": [[528, "pypath.inputs.mimp.mimp_interactions"]], "pypath.inputs.mir2disease": [[529, "module-pypath.inputs.mir2disease"]], "mir2disease_interactions() (in module pypath.inputs.mir2disease)": [[530, "pypath.inputs.mir2disease.mir2disease_interactions"]], "pypath.inputs.mirbase": [[531, "module-pypath.inputs.mirbase"]], "get_mirbase_aliases() (in module pypath.inputs.mirbase)": [[532, "pypath.inputs.mirbase.get_mirbase_aliases"]], "mirbase_ids() (in module pypath.inputs.mirbase)": [[533, "pypath.inputs.mirbase.mirbase_ids"]], "mirbase_mature() (in module pypath.inputs.mirbase)": [[534, "pypath.inputs.mirbase.mirbase_mature"]], "mirbase_mature_all() (in module pypath.inputs.mirbase)": [[535, "pypath.inputs.mirbase.mirbase_mature_all"]], "mirbase_precursor() (in module pypath.inputs.mirbase)": [[536, "pypath.inputs.mirbase.mirbase_precursor"]], "mirbase_precursor_all() (in module pypath.inputs.mirbase)": [[537, "pypath.inputs.mirbase.mirbase_precursor_all"]], "mirbase_precursor_to_mature() (in module pypath.inputs.mirbase)": [[538, "pypath.inputs.mirbase.mirbase_precursor_to_mature"]], "pypath.inputs.mirdeathdb": [[539, "module-pypath.inputs.mirdeathdb"]], "mirdeathdb_interactions() (in module pypath.inputs.mirdeathdb)": [[540, "pypath.inputs.mirdeathdb.mirdeathdb_interactions"]], "pypath.inputs.mirecords": [[541, "module-pypath.inputs.mirecords"]], "mirecords_interactions() (in module pypath.inputs.mirecords)": [[542, "pypath.inputs.mirecords.mirecords_interactions"]], "pypath.inputs.mirtarbase": [[543, "module-pypath.inputs.mirtarbase"]], "mirtarbase_interactions() (in module pypath.inputs.mirtarbase)": [[544, "pypath.inputs.mirtarbase.mirtarbase_interactions"]], "pypath.inputs.mitab": [[545, "module-pypath.inputs.mitab"]], "mitab_field_list() (in module pypath.inputs.mitab)": [[546, "pypath.inputs.mitab.mitab_field_list"]], "mitab_field_uniprot() (in module pypath.inputs.mitab)": [[547, "pypath.inputs.mitab.mitab_field_uniprot"]], "pypath.inputs.mppi": [[548, "module-pypath.inputs.mppi"]], "mppi_interactions() (in module pypath.inputs.mppi)": [[549, "pypath.inputs.mppi.mppi_interactions"]], "pypath.inputs.msigdb": [[550, "module-pypath.inputs.msigdb"]], "msigdb_annotations() (in module pypath.inputs.msigdb)": [[551, "pypath.inputs.msigdb.msigdb_annotations"]], "msigdb_download() (in module pypath.inputs.msigdb)": [[552, "pypath.inputs.msigdb.msigdb_download"]], "msigdb_download_collections() (in module pypath.inputs.msigdb)": [[553, "pypath.inputs.msigdb.msigdb_download_collections"]], "pypath.inputs.ncrdeathdb": [[554, "module-pypath.inputs.ncrdeathdb"]], "ncrdeathdb_interactions() (in module pypath.inputs.ncrdeathdb)": [[555, "pypath.inputs.ncrdeathdb.ncrdeathdb_interactions"]], "pypath.inputs.negatome": [[556, "module-pypath.inputs.negatome"]], "negatome_interactions() (in module pypath.inputs.negatome)": [[557, "pypath.inputs.negatome.negatome_interactions"]], "pypath.inputs.netbiol": [[558, "module-pypath.inputs.netbiol"]], "arn_interactions() (in module pypath.inputs.netbiol)": [[559, "pypath.inputs.netbiol.arn_interactions"]], "nrf2ome_interactions() (in module pypath.inputs.netbiol)": [[560, "pypath.inputs.netbiol.nrf2ome_interactions"]], "pypath.inputs.netpath": [[561, "module-pypath.inputs.netpath"]], "netpath_interactions() (in module pypath.inputs.netpath)": [[562, "pypath.inputs.netpath.netpath_interactions"]], "netpath_names() (in module pypath.inputs.netpath)": [[563, "pypath.inputs.netpath.netpath_names"]], "netpath_pathway_annotations() (in module pypath.inputs.netpath)": [[564, "pypath.inputs.netpath.netpath_pathway_annotations"]], "pypath.inputs.offsides": [[565, "module-pypath.inputs.offsides"]], "offsides_side_effects() (in module pypath.inputs.offsides)": [[566, "pypath.inputs.offsides.offsides_side_effects"]], "pypath.inputs.oma": [[567, "module-pypath.inputs.oma"]], "oma_orthologs() (in module pypath.inputs.oma)": [[568, "pypath.inputs.oma.oma_orthologs"]], "oma_table() (in module pypath.inputs.oma)": [[569, "pypath.inputs.oma.oma_table"]], "pypath.inputs.ontology": [[570, "module-pypath.inputs.ontology"]], "listof_ontologies() (in module pypath.inputs.ontology)": [[571, "pypath.inputs.ontology.listof_ontologies"]], "ontology() (in module pypath.inputs.ontology)": [[572, "pypath.inputs.ontology.ontology"]], "pypath.inputs.opentargets": [[573, "module-pypath.inputs.opentargets"]], "opentargets_adverse_reactions() (in module pypath.inputs.opentargets)": [[574, "pypath.inputs.opentargets.opentargets_adverse_reactions"]], "opentargets_baseline_expression() (in module pypath.inputs.opentargets)": [[575, "pypath.inputs.opentargets.opentargets_baseline_expression"]], "opentargets_direct_score() (in module pypath.inputs.opentargets)": [[576, "pypath.inputs.opentargets.opentargets_direct_score"]], "opentargets_general() (in module pypath.inputs.opentargets)": [[577, "pypath.inputs.opentargets.opentargets_general"]], "opentargets_indirect_score() (in module pypath.inputs.opentargets)": [[578, "pypath.inputs.opentargets.opentargets_indirect_score"]], "pypath.inputs.opm": [[579, "module-pypath.inputs.opm"]], "opm_annotations() (in module pypath.inputs.opm)": [[580, "pypath.inputs.opm.opm_annotations"]], "pypath.inputs.oreganno": [[581, "module-pypath.inputs.oreganno"]], "oreganno_interactions() (in module pypath.inputs.oreganno)": [[582, "pypath.inputs.oreganno.oreganno_interactions"]], "oreganno_raw() (in module pypath.inputs.oreganno)": [[583, "pypath.inputs.oreganno.oreganno_raw"]], "pypath.inputs.panglaodb": [[584, "module-pypath.inputs.panglaodb"]], "panglaodb_annotations() (in module pypath.inputs.panglaodb)": [[585, "pypath.inputs.panglaodb.panglaodb_annotations"]], "panglaodb_raw() (in module pypath.inputs.panglaodb)": [[586, "pypath.inputs.panglaodb.panglaodb_raw"]], "pypath.inputs.pathophenodb": [[587, "module-pypath.inputs.pathophenodb"]], "diseasepathogen (class in pypath.inputs.pathophenodb)": [[588, "pypath.inputs.pathophenodb.DiseasePathogen"]], "__init__() (pypath.inputs.pathophenodb.diseasepathogen method)": [[588, "pypath.inputs.pathophenodb.DiseasePathogen.__init__"]], "count() (pypath.inputs.pathophenodb.diseasepathogen method)": [[588, "pypath.inputs.pathophenodb.DiseasePathogen.count"]], "disease (pypath.inputs.pathophenodb.diseasepathogen attribute)": [[588, "pypath.inputs.pathophenodb.DiseasePathogen.disease"]], "disease_id (pypath.inputs.pathophenodb.diseasepathogen attribute)": [[588, "pypath.inputs.pathophenodb.DiseasePathogen.disease_id"]], "evidence (pypath.inputs.pathophenodb.diseasepathogen attribute)": [[588, "pypath.inputs.pathophenodb.DiseasePathogen.evidence"]], "index() (pypath.inputs.pathophenodb.diseasepathogen method)": [[588, "pypath.inputs.pathophenodb.DiseasePathogen.index"]], "pathogen (pypath.inputs.pathophenodb.diseasepathogen attribute)": [[588, "pypath.inputs.pathophenodb.DiseasePathogen.pathogen"]], "pathogen_taxid (pypath.inputs.pathophenodb.diseasepathogen attribute)": [[588, "pypath.inputs.pathophenodb.DiseasePathogen.pathogen_taxid"]], "disease_pathogen_interactions() (in module pypath.inputs.pathophenodb)": [[589, "pypath.inputs.pathophenodb.disease_pathogen_interactions"]], "pypath.inputs.pathwaycommons": [[590, "module-pypath.inputs.pathwaycommons"]], "pathwaycommonsinteraction (class in pypath.inputs.pathwaycommons)": [[591, "pypath.inputs.pathwaycommons.PathwayCommonsInteraction"]], "__init__() (pypath.inputs.pathwaycommons.pathwaycommonsinteraction method)": [[591, "pypath.inputs.pathwaycommons.PathwayCommonsInteraction.__init__"]], "count() (pypath.inputs.pathwaycommons.pathwaycommonsinteraction method)": [[591, "pypath.inputs.pathwaycommons.PathwayCommonsInteraction.count"]], "id_a (pypath.inputs.pathwaycommons.pathwaycommonsinteraction attribute)": [[591, "pypath.inputs.pathwaycommons.PathwayCommonsInteraction.id_a"]], "id_b (pypath.inputs.pathwaycommons.pathwaycommonsinteraction attribute)": [[591, "pypath.inputs.pathwaycommons.PathwayCommonsInteraction.id_b"]], "index() (pypath.inputs.pathwaycommons.pathwaycommonsinteraction method)": [[591, "pypath.inputs.pathwaycommons.PathwayCommonsInteraction.index"]], "interaction_type (pypath.inputs.pathwaycommons.pathwaycommonsinteraction attribute)": [[591, "pypath.inputs.pathwaycommons.PathwayCommonsInteraction.interaction_type"]], "resource (pypath.inputs.pathwaycommons.pathwaycommonsinteraction attribute)": [[591, "pypath.inputs.pathwaycommons.PathwayCommonsInteraction.resource"]], "pathwaycommonsresource (class in pypath.inputs.pathwaycommons)": [[592, "pypath.inputs.pathwaycommons.PathwayCommonsResource"]], "__init__() (pypath.inputs.pathwaycommons.pathwaycommonsresource method)": [[592, "pypath.inputs.pathwaycommons.PathwayCommonsResource.__init__"]], "count() (pypath.inputs.pathwaycommons.pathwaycommonsresource method)": [[592, "pypath.inputs.pathwaycommons.PathwayCommonsResource.count"]], "index() (pypath.inputs.pathwaycommons.pathwaycommonsresource method)": [[592, "pypath.inputs.pathwaycommons.PathwayCommonsResource.index"]], "name (pypath.inputs.pathwaycommons.pathwaycommonsresource attribute)": [[592, "pypath.inputs.pathwaycommons.PathwayCommonsResource.name"]], "pc_label (pypath.inputs.pathwaycommons.pathwaycommonsresource attribute)": [[592, "pypath.inputs.pathwaycommons.PathwayCommonsResource.pc_label"]], "version (pypath.inputs.pathwaycommons.pathwaycommonsresource attribute)": [[592, "pypath.inputs.pathwaycommons.PathwayCommonsResource.version"]], "pathwaycommons_bind_interactions() (in module pypath.inputs.pathwaycommons)": [[593, "pypath.inputs.pathwaycommons.pathwaycommons_bind_interactions"]], "pathwaycommons_biogrid_interactions() (in module pypath.inputs.pathwaycommons)": [[594, "pypath.inputs.pathwaycommons.pathwaycommons_biogrid_interactions"]], "pathwaycommons_corum_interactions() (in module pypath.inputs.pathwaycommons)": [[595, "pypath.inputs.pathwaycommons.pathwaycommons_corum_interactions"]], "pathwaycommons_dip_interactions() (in module pypath.inputs.pathwaycommons)": [[596, "pypath.inputs.pathwaycommons.pathwaycommons_dip_interactions"]], "pathwaycommons_hprd_interactions() (in module pypath.inputs.pathwaycommons)": [[597, "pypath.inputs.pathwaycommons.pathwaycommons_hprd_interactions"]], "pathwaycommons_inoh_interactions() (in module pypath.inputs.pathwaycommons)": [[598, "pypath.inputs.pathwaycommons.pathwaycommons_inoh_interactions"]], "pathwaycommons_intact_interactions() (in module pypath.inputs.pathwaycommons)": [[599, "pypath.inputs.pathwaycommons.pathwaycommons_intact_interactions"]], "pathwaycommons_interactions() (in module pypath.inputs.pathwaycommons)": [[600, "pypath.inputs.pathwaycommons.pathwaycommons_interactions"]], "pathwaycommons_kegg_interactions() (in module pypath.inputs.pathwaycommons)": [[601, "pypath.inputs.pathwaycommons.pathwaycommons_kegg_interactions"]], "pathwaycommons_netpath_interactions() (in module pypath.inputs.pathwaycommons)": [[602, "pypath.inputs.pathwaycommons.pathwaycommons_netpath_interactions"]], "pathwaycommons_panther_interactions() (in module pypath.inputs.pathwaycommons)": [[603, "pypath.inputs.pathwaycommons.pathwaycommons_panther_interactions"]], "pathwaycommons_phosphosite_interactions() (in module pypath.inputs.pathwaycommons)": [[604, "pypath.inputs.pathwaycommons.pathwaycommons_phosphosite_interactions"]], "pathwaycommons_reactome_interactions() (in module pypath.inputs.pathwaycommons)": [[605, "pypath.inputs.pathwaycommons.pathwaycommons_reactome_interactions"]], "pathwaycommons_wikipathways_interactions() (in module pypath.inputs.pathwaycommons)": [[606, "pypath.inputs.pathwaycommons.pathwaycommons_wikipathways_interactions"]], "pypath.inputs.pazar": [[607, "module-pypath.inputs.pazar"]], "pazar_interactions() (in module pypath.inputs.pazar)": [[608, "pypath.inputs.pazar.pazar_interactions"]], "pypath.inputs.pdb": [[609, "module-pypath.inputs.pdb"]], "pdb_chains() (in module pypath.inputs.pdb)": [[610, "pypath.inputs.pdb.pdb_chains"]], "pdb_complexes() (in module pypath.inputs.pdb)": [[611, "pypath.inputs.pdb.pdb_complexes"]], "pdb_uniprot() (in module pypath.inputs.pdb)": [[612, "pypath.inputs.pdb.pdb_uniprot"]], "pypath.inputs.pdzbase": [[613, "module-pypath.inputs.pdzbase"]], "pdzbase_interactions() (in module pypath.inputs.pdzbase)": [[614, "pypath.inputs.pdzbase.pdzbase_interactions"]], "pypath.inputs.pepcyber": [[615, "module-pypath.inputs.pepcyber"]], "pepcyber_details() (in module pypath.inputs.pepcyber)": [[616, "pypath.inputs.pepcyber.pepcyber_details"]], "pepcyber_interactions() (in module pypath.inputs.pepcyber)": [[617, "pypath.inputs.pepcyber.pepcyber_interactions"]], "pypath.inputs.pfam": [[618, "module-pypath.inputs.pfam"]], "pfam_names() (in module pypath.inputs.pfam)": [[619, "pypath.inputs.pfam.pfam_names"]], "pfam_pdb() (in module pypath.inputs.pfam)": [[620, "pypath.inputs.pfam.pfam_pdb"]], "pfam_regions() (in module pypath.inputs.pfam)": [[621, "pypath.inputs.pfam.pfam_regions"]], "pfam_uniprot() (in module pypath.inputs.pfam)": [[622, "pypath.inputs.pfam.pfam_uniprot"]], "pypath.inputs.pharos": [[623, "module-pypath.inputs.pharos"]], "pharos_diseases() (in module pypath.inputs.pharos)": [[624, "pypath.inputs.pharos.pharos_diseases"]], "pharos_expression() (in module pypath.inputs.pharos)": [[625, "pypath.inputs.pharos.pharos_expression"]], "pharos_general() (in module pypath.inputs.pharos)": [[626, "pypath.inputs.pharos.pharos_general"]], "pharos_gtex() (in module pypath.inputs.pharos)": [[627, "pypath.inputs.pharos.pharos_gtex"]], "pharos_ligands() (in module pypath.inputs.pharos)": [[628, "pypath.inputs.pharos.pharos_ligands"]], "pharos_orthologs() (in module pypath.inputs.pharos)": [[629, "pypath.inputs.pharos.pharos_orthologs"]], "pharos_targets() (in module pypath.inputs.pharos)": [[630, "pypath.inputs.pharos.pharos_targets"]], "pharos_xrefs() (in module pypath.inputs.pharos)": [[631, "pypath.inputs.pharos.pharos_xrefs"]], "pypath.inputs.phobius": [[632, "module-pypath.inputs.phobius"]], "phobius_annotations() (in module pypath.inputs.phobius)": [[633, "pypath.inputs.phobius.phobius_annotations"]], "pypath.inputs.phosphatome": [[634, "module-pypath.inputs.phosphatome"]], "phosphatome_annotations() (in module pypath.inputs.phosphatome)": [[635, "pypath.inputs.phosphatome.phosphatome_annotations"]], "pypath.inputs.phosphoelm": [[636, "module-pypath.inputs.phosphoelm"]], "phosphoelm_enzyme_substrate() (in module pypath.inputs.phosphoelm)": [[637, "pypath.inputs.phosphoelm.phosphoelm_enzyme_substrate"]], "phosphoelm_interactions() (in module pypath.inputs.phosphoelm)": [[638, "pypath.inputs.phosphoelm.phosphoelm_interactions"]], "phosphoelm_kinases() (in module pypath.inputs.phosphoelm)": [[639, "pypath.inputs.phosphoelm.phosphoelm_kinases"]], "pypath.inputs.phosphonetworks": [[640, "module-pypath.inputs.phosphonetworks"]], "phosphonetworks_enzyme_substrate() (in module pypath.inputs.phosphonetworks)": [[641, "pypath.inputs.phosphonetworks.phosphonetworks_enzyme_substrate"]], "phosphonetworks_interactions() (in module pypath.inputs.phosphonetworks)": [[642, "pypath.inputs.phosphonetworks.phosphonetworks_interactions"]], "pypath.inputs.phosphopoint": [[643, "module-pypath.inputs.phosphopoint"]], "phosphopoint_directions() (in module pypath.inputs.phosphopoint)": [[644, "pypath.inputs.phosphopoint.phosphopoint_directions"]], "phosphopoint_interactions() (in module pypath.inputs.phosphopoint)": [[645, "pypath.inputs.phosphopoint.phosphopoint_interactions"]], "pypath.inputs.phosphosite": [[646, "module-pypath.inputs.phosphosite"]], "phosphosite_directions() (in module pypath.inputs.phosphosite)": [[647, "pypath.inputs.phosphosite.phosphosite_directions"]], "phosphosite_enzyme_substrate() (in module pypath.inputs.phosphosite)": [[648, "pypath.inputs.phosphosite.phosphosite_enzyme_substrate"]], "phosphosite_interactions() (in module pypath.inputs.phosphosite)": [[649, "pypath.inputs.phosphosite.phosphosite_interactions"]], "phosphosite_interactions_all() (in module pypath.inputs.phosphosite)": [[650, "pypath.inputs.phosphosite.phosphosite_interactions_all"]], "phosphosite_interactions_curated() (in module pypath.inputs.phosphosite)": [[651, "pypath.inputs.phosphosite.phosphosite_interactions_curated"]], "phosphosite_interactions_new() (in module pypath.inputs.phosphosite)": [[652, "pypath.inputs.phosphosite.phosphosite_interactions_new"]], "phosphosite_interactions_noref() (in module pypath.inputs.phosphosite)": [[653, "pypath.inputs.phosphosite.phosphosite_interactions_noref"]], "phosphosite_ptm_orthology() (in module pypath.inputs.phosphosite)": [[654, "pypath.inputs.phosphosite.phosphosite_ptm_orthology"]], "phosphosite_ptms() (in module pypath.inputs.phosphosite)": [[655, "pypath.inputs.phosphosite.phosphosite_ptms"]], "phosphosite_regsites() (in module pypath.inputs.phosphosite)": [[656, "pypath.inputs.phosphosite.phosphosite_regsites"]], "phosphosite_regsites_one_organism() (in module pypath.inputs.phosphosite)": [[657, "pypath.inputs.phosphosite.phosphosite_regsites_one_organism"]], "regsites_tab() (in module pypath.inputs.phosphosite)": [[658, "pypath.inputs.phosphosite.regsites_tab"]], "pypath.inputs.pisa": [[659, "module-pypath.inputs.pisa"]], "pisabond (class in pypath.inputs.pisa)": [[660, "pypath.inputs.pisa.PisaBond"]], "__init__() (pypath.inputs.pisa.pisabond method)": [[660, "pypath.inputs.pisa.PisaBond.__init__"]], "chain_1 (pypath.inputs.pisa.pisabond attribute)": [[660, "pypath.inputs.pisa.PisaBond.chain_1"]], "chain_2 (pypath.inputs.pisa.pisabond attribute)": [[660, "pypath.inputs.pisa.PisaBond.chain_2"]], "count() (pypath.inputs.pisa.pisabond method)": [[660, "pypath.inputs.pisa.PisaBond.count"]], "index() (pypath.inputs.pisa.pisabond method)": [[660, "pypath.inputs.pisa.PisaBond.index"]], "residue_1 (pypath.inputs.pisa.pisabond attribute)": [[660, "pypath.inputs.pisa.PisaBond.residue_1"]], "residue_2 (pypath.inputs.pisa.pisabond attribute)": [[660, "pypath.inputs.pisa.PisaBond.residue_2"]], "seqnum_1 (pypath.inputs.pisa.pisabond attribute)": [[660, "pypath.inputs.pisa.PisaBond.seqnum_1"]], "seqnum_2 (pypath.inputs.pisa.pisabond attribute)": [[660, "pypath.inputs.pisa.PisaBond.seqnum_2"]], "uniprot_1 (pypath.inputs.pisa.pisabond attribute)": [[660, "pypath.inputs.pisa.PisaBond.uniprot_1"]], "uniprot_2 (pypath.inputs.pisa.pisabond attribute)": [[660, "pypath.inputs.pisa.PisaBond.uniprot_2"]], "pisa_bonds() (in module pypath.inputs.pisa)": [[661, "pypath.inputs.pisa.pisa_bonds"]], "pisa_interfaces() (in module pypath.inputs.pisa)": [[662, "pypath.inputs.pisa.pisa_interfaces"]], "pypath.inputs.pro": [[663, "module-pypath.inputs.pro"]], "get_pro() (in module pypath.inputs.pro)": [[664, "pypath.inputs.pro.get_pro"]], "pro_mapping() (in module pypath.inputs.pro)": [[665, "pypath.inputs.pro.pro_mapping"]], "pypath.inputs.progeny": [[666, "module-pypath.inputs.progeny"]], "progeny_annotations() (in module pypath.inputs.progeny)": [[667, "pypath.inputs.progeny.progeny_annotations"]], "progeny_raw() (in module pypath.inputs.progeny)": [[668, "pypath.inputs.progeny.progeny_raw"]], "pypath.inputs.proteinatlas": [[669, "module-pypath.inputs.proteinatlas"]], "get_proteinatlas() (in module pypath.inputs.proteinatlas)": [[670, "pypath.inputs.proteinatlas.get_proteinatlas"]], "proteinatlas_annotations() (in module pypath.inputs.proteinatlas)": [[671, "pypath.inputs.proteinatlas.proteinatlas_annotations"]], "proteinatlas_secretome_annotations() (in module pypath.inputs.proteinatlas)": [[672, "pypath.inputs.proteinatlas.proteinatlas_secretome_annotations"]], "proteinatlas_subcellular_annotations() (in module pypath.inputs.proteinatlas)": [[673, "pypath.inputs.proteinatlas.proteinatlas_subcellular_annotations"]], "pypath.inputs.proteins": [[674, "module-pypath.inputs.proteins"]], "variants() (in module pypath.inputs.proteins)": [[675, "pypath.inputs.proteins.variants"]], "pypath.inputs.protmapper": [[676, "module-pypath.inputs.protmapper"]], "get_protmapper() (in module pypath.inputs.protmapper)": [[677, "pypath.inputs.protmapper.get_protmapper"]], "protmapper_enzyme_substrate() (in module pypath.inputs.protmapper)": [[678, "pypath.inputs.protmapper.protmapper_enzyme_substrate"]], "protmapper_interactions() (in module pypath.inputs.protmapper)": [[679, "pypath.inputs.protmapper.protmapper_interactions"]], "pypath.inputs.pubchem": [[680, "module-pypath.inputs.pubchem"]], "pubchem_mapping() (in module pypath.inputs.pubchem)": [[681, "pypath.inputs.pubchem.pubchem_mapping"]], "pypath.inputs.pubmed": [[682, "module-pypath.inputs.pubmed"]], "get_pmid() (in module pypath.inputs.pubmed)": [[683, "pypath.inputs.pubmed.get_pmid"]], "get_pubmeds() (in module pypath.inputs.pubmed)": [[684, "pypath.inputs.pubmed.get_pubmeds"]], "only_pmids() (in module pypath.inputs.pubmed)": [[685, "pypath.inputs.pubmed.only_pmids"]], "open_pubmed() (in module pypath.inputs.pubmed)": [[686, "pypath.inputs.pubmed.open_pubmed"]], "pmids_dict() (in module pypath.inputs.pubmed)": [[687, "pypath.inputs.pubmed.pmids_dict"]], "pmids_list() (in module pypath.inputs.pubmed)": [[688, "pypath.inputs.pubmed.pmids_list"]], "pypath.inputs.ramilowski2015": [[689, "module-pypath.inputs.ramilowski2015"]], "ramilowski_interactions() (in module pypath.inputs.ramilowski2015)": [[690, "pypath.inputs.ramilowski2015.ramilowski_interactions"]], "ramilowski_locations() (in module pypath.inputs.ramilowski2015)": [[691, "pypath.inputs.ramilowski2015.ramilowski_locations"]], "pypath.inputs.ramp": [[692, "module-pypath.inputs.ramp"]], "ramp_id_types() (in module pypath.inputs.ramp)": [[693, "pypath.inputs.ramp.ramp_id_types"]], "ramp_id_types_2() (in module pypath.inputs.ramp)": [[694, "pypath.inputs.ramp.ramp_id_types_2"]], "ramp_list_tables() (in module pypath.inputs.ramp)": [[695, "pypath.inputs.ramp.ramp_list_tables"]], "ramp_mapping() (in module pypath.inputs.ramp)": [[696, "pypath.inputs.ramp.ramp_mapping"]], "ramp_raw() (in module pypath.inputs.ramp)": [[697, "pypath.inputs.ramp.ramp_raw"]], "ramp_show_tables() (in module pypath.inputs.ramp)": [[698, "pypath.inputs.ramp.ramp_show_tables"]], "pypath.inputs.rdata": [[699, "module-pypath.inputs.rdata"]], "pypath.inputs.reaction": [[700, "module-pypath.inputs.reaction"]], "acsn_biopax() (in module pypath.inputs.reaction)": [[701, "pypath.inputs.reaction.acsn_biopax"]], "acsn_interactions_2() (in module pypath.inputs.reaction)": [[702, "pypath.inputs.reaction.acsn_interactions_2"]], "get_acsn_effects() (in module pypath.inputs.reaction)": [[703, "pypath.inputs.reaction.get_acsn_effects"]], "get_controls() (in module pypath.inputs.reaction)": [[704, "pypath.inputs.reaction.get_controls"]], "get_interactions() (in module pypath.inputs.reaction)": [[705, "pypath.inputs.reaction.get_interactions"]], "get_reactions() (in module pypath.inputs.reaction)": [[706, "pypath.inputs.reaction.get_reactions"]], "get_soup() (in module pypath.inputs.reaction)": [[707, "pypath.inputs.reaction.get_soup"]], "panther_biopax() (in module pypath.inputs.reaction)": [[708, "pypath.inputs.reaction.panther_biopax"]], "panther_interactions() (in module pypath.inputs.reaction)": [[709, "pypath.inputs.reaction.panther_interactions"]], "pid_biopax() (in module pypath.inputs.reaction)": [[710, "pypath.inputs.reaction.pid_biopax"]], "pid_interactions() (in module pypath.inputs.reaction)": [[711, "pypath.inputs.reaction.pid_interactions"]], "process_complex() (in module pypath.inputs.reaction)": [[712, "pypath.inputs.reaction.process_complex"]], "process_controls() (in module pypath.inputs.reaction)": [[713, "pypath.inputs.reaction.process_controls"]], "process_reactions() (in module pypath.inputs.reaction)": [[714, "pypath.inputs.reaction.process_reactions"]], "reactions_biopax() (in module pypath.inputs.reaction)": [[715, "pypath.inputs.reaction.reactions_biopax"]], "reactome_biopax() (in module pypath.inputs.reaction)": [[716, "pypath.inputs.reaction.reactome_biopax"]], "reactome_bs() (in module pypath.inputs.reaction)": [[717, "pypath.inputs.reaction.reactome_bs"]], "reactome_interactions() (in module pypath.inputs.reaction)": [[718, "pypath.inputs.reaction.reactome_interactions"]], "reactome_sbml() (in module pypath.inputs.reaction)": [[719, "pypath.inputs.reaction.reactome_sbml"]], "pypath.inputs.reactome": [[720, "module-pypath.inputs.reactome"]], "reactome_chebis() (in module pypath.inputs.reactome)": [[721, "pypath.inputs.reactome.reactome_chebis"]], "reactome_pathway_relations() (in module pypath.inputs.reactome)": [[722, "pypath.inputs.reactome.reactome_pathway_relations"]], "reactome_pathways() (in module pypath.inputs.reactome)": [[723, "pypath.inputs.reactome.reactome_pathways"]], "reactome_uniprots() (in module pypath.inputs.reactome)": [[724, "pypath.inputs.reactome.reactome_uniprots"]], "pypath.inputs.scconnect": [[725, "module-pypath.inputs.scconnect"]], "scconnect_annotations() (in module pypath.inputs.scconnect)": [[726, "pypath.inputs.scconnect.scconnect_annotations"]], "scconnect_complexes() (in module pypath.inputs.scconnect)": [[727, "pypath.inputs.scconnect.scconnect_complexes"]], "scconnect_interactions() (in module pypath.inputs.scconnect)": [[728, "pypath.inputs.scconnect.scconnect_interactions"]], "pypath.inputs.science": [[729, "module-pypath.inputs.science"]], "science_download() (in module pypath.inputs.science)": [[730, "pypath.inputs.science.science_download"]], "pypath.inputs.sider": [[731, "module-pypath.inputs.sider"]], "siderdrug (class in pypath.inputs.sider)": [[732, "pypath.inputs.sider.SiderDrug"]], "__init__() (pypath.inputs.sider.siderdrug method)": [[732, "pypath.inputs.sider.SiderDrug.__init__"]], "atc (pypath.inputs.sider.siderdrug attribute)": [[732, "pypath.inputs.sider.SiderDrug.atc"]], "count() (pypath.inputs.sider.siderdrug method)": [[732, "pypath.inputs.sider.SiderDrug.count"]], "index() (pypath.inputs.sider.siderdrug method)": [[732, "pypath.inputs.sider.SiderDrug.index"]], "name (pypath.inputs.sider.siderdrug attribute)": [[732, "pypath.inputs.sider.SiderDrug.name"]], "sidersideeffect (class in pypath.inputs.sider)": [[733, "pypath.inputs.sider.SiderSideeffect"]], "__init__() (pypath.inputs.sider.sidersideeffect method)": [[733, "pypath.inputs.sider.SiderSideeffect.__init__"]], "count() (pypath.inputs.sider.sidersideeffect method)": [[733, "pypath.inputs.sider.SiderSideeffect.count"]], "index() (pypath.inputs.sider.sidersideeffect method)": [[733, "pypath.inputs.sider.SiderSideeffect.index"]], "side_effect (pypath.inputs.sider.sidersideeffect attribute)": [[733, "pypath.inputs.sider.SiderSideeffect.side_effect"]], "umls_concept_in_meddra (pypath.inputs.sider.sidersideeffect attribute)": [[733, "pypath.inputs.sider.SiderSideeffect.umls_concept_in_meddra"]], "umls_concept_on_label (pypath.inputs.sider.sidersideeffect attribute)": [[733, "pypath.inputs.sider.SiderSideeffect.umls_concept_on_label"]], "sidersideeffectmeddra (class in pypath.inputs.sider)": [[734, "pypath.inputs.sider.SiderSideeffectMeddra"]], "__init__() (pypath.inputs.sider.sidersideeffectmeddra method)": [[734, "pypath.inputs.sider.SiderSideeffectMeddra.__init__"]], "cid (pypath.inputs.sider.sidersideeffectmeddra attribute)": [[734, "pypath.inputs.sider.SiderSideeffectMeddra.cid"]], "count() (pypath.inputs.sider.sidersideeffectmeddra method)": [[734, "pypath.inputs.sider.SiderSideeffectMeddra.count"]], "index() (pypath.inputs.sider.sidersideeffectmeddra method)": [[734, "pypath.inputs.sider.SiderSideeffectMeddra.index"]], "meddra_id (pypath.inputs.sider.sidersideeffectmeddra attribute)": [[734, "pypath.inputs.sider.SiderSideeffectMeddra.meddra_id"]], "side_effect_name (pypath.inputs.sider.sidersideeffectmeddra attribute)": [[734, "pypath.inputs.sider.SiderSideeffectMeddra.side_effect_name"]], "sidersideeffetfrequency (class in pypath.inputs.sider)": [[735, "pypath.inputs.sider.SiderSideeffetFrequency"]], "__init__() (pypath.inputs.sider.sidersideeffetfrequency method)": [[735, "pypath.inputs.sider.SiderSideeffetFrequency.__init__"]], "count() (pypath.inputs.sider.sidersideeffetfrequency method)": [[735, "pypath.inputs.sider.SiderSideeffetFrequency.count"]], "frequency (pypath.inputs.sider.sidersideeffetfrequency attribute)": [[735, "pypath.inputs.sider.SiderSideeffetFrequency.frequency"]], "index() (pypath.inputs.sider.sidersideeffetfrequency method)": [[735, "pypath.inputs.sider.SiderSideeffetFrequency.index"]], "side_effect (pypath.inputs.sider.sidersideeffetfrequency attribute)": [[735, "pypath.inputs.sider.SiderSideeffetFrequency.side_effect"]], "umls_concept_in_meddra (pypath.inputs.sider.sidersideeffetfrequency attribute)": [[735, "pypath.inputs.sider.SiderSideeffetFrequency.umls_concept_in_meddra"]], "umls_concept_on_label (pypath.inputs.sider.sidersideeffetfrequency attribute)": [[735, "pypath.inputs.sider.SiderSideeffetFrequency.umls_concept_on_label"]], "sider_drug_names() (in module pypath.inputs.sider)": [[736, "pypath.inputs.sider.sider_drug_names"]], "sider_meddra_side_effects() (in module pypath.inputs.sider)": [[737, "pypath.inputs.sider.sider_meddra_side_effects"]], "sider_side_effect_frequencies() (in module pypath.inputs.sider)": [[738, "pypath.inputs.sider.sider_side_effect_frequencies"]], "sider_side_effects() (in module pypath.inputs.sider)": [[739, "pypath.inputs.sider.sider_side_effects"]], "pypath.inputs.signalink": [[740, "module-pypath.inputs.signalink"]], "signalink_annotations() (in module pypath.inputs.signalink)": [[741, "pypath.inputs.signalink.signalink_annotations"]], "signalink_function_annotations() (in module pypath.inputs.signalink)": [[742, "pypath.inputs.signalink.signalink_function_annotations"]], "signalink_interactions() (in module pypath.inputs.signalink)": [[743, "pypath.inputs.signalink.signalink_interactions"]], "signalink_pathway_annotations() (in module pypath.inputs.signalink)": [[744, "pypath.inputs.signalink.signalink_pathway_annotations"]], "pypath.inputs.signor": [[745, "module-pypath.inputs.signor"]], "signor_complexes() (in module pypath.inputs.signor)": [[746, "pypath.inputs.signor.signor_complexes"]], "signor_enzyme_substrate() (in module pypath.inputs.signor)": [[747, "pypath.inputs.signor.signor_enzyme_substrate"]], "signor_interactions() (in module pypath.inputs.signor)": [[748, "pypath.inputs.signor.signor_interactions"]], "signor_pathway_annotations() (in module pypath.inputs.signor)": [[749, "pypath.inputs.signor.signor_pathway_annotations"]], "signor_pathways() (in module pypath.inputs.signor)": [[750, "pypath.inputs.signor.signor_pathways"]], "signor_protein_families() (in module pypath.inputs.signor)": [[751, "pypath.inputs.signor.signor_protein_families"]], "pypath.inputs.spike": [[752, "module-pypath.inputs.spike"]], "spike_complexes() (in module pypath.inputs.spike)": [[753, "pypath.inputs.spike.spike_complexes"]], "spike_interactions() (in module pypath.inputs.spike)": [[754, "pypath.inputs.spike.spike_interactions"]], "pypath.inputs.stitch": [[755, "module-pypath.inputs.stitch"]], "stitch_actions_interactions() (in module pypath.inputs.stitch)": [[756, "pypath.inputs.stitch.stitch_actions_interactions"]], "stitch_links_interactions() (in module pypath.inputs.stitch)": [[757, "pypath.inputs.stitch.stitch_links_interactions"]], "pypath.inputs.string": [[758, "module-pypath.inputs.string"]], "string_effects() (in module pypath.inputs.string)": [[759, "pypath.inputs.string.string_effects"]], "string_links_interactions() (in module pypath.inputs.string)": [[760, "pypath.inputs.string.string_links_interactions"]], "string_physical_interactions() (in module pypath.inputs.string)": [[761, "pypath.inputs.string.string_physical_interactions"]], "string_species() (in module pypath.inputs.string)": [[762, "pypath.inputs.string.string_species"]], "pypath.inputs.surfaceome": [[763, "module-pypath.inputs.surfaceome"]], "surfaceome_annotations() (in module pypath.inputs.surfaceome)": [[764, "pypath.inputs.surfaceome.surfaceome_annotations"]], "pypath.inputs.switches_elm": [[765, "module-pypath.inputs.switches_elm"]], "get_switches_elm() (in module pypath.inputs.switches_elm)": [[766, "pypath.inputs.switches_elm.get_switches_elm"]], "pypath.inputs.talklr": [[767, "module-pypath.inputs.talklr"]], "talklr_annotations() (in module pypath.inputs.talklr)": [[768, "pypath.inputs.talklr.talklr_annotations"]], "talklr_interactions() (in module pypath.inputs.talklr)": [[769, "pypath.inputs.talklr.talklr_interactions"]], "talklr_raw() (in module pypath.inputs.talklr)": [[770, "pypath.inputs.talklr.talklr_raw"]], "pypath.inputs.tcdb": [[771, "module-pypath.inputs.tcdb"]], "tcdb_annotations() (in module pypath.inputs.tcdb)": [[772, "pypath.inputs.tcdb.tcdb_annotations"]], "tcdb_classes() (in module pypath.inputs.tcdb)": [[773, "pypath.inputs.tcdb.tcdb_classes"]], "tcdb_families() (in module pypath.inputs.tcdb)": [[774, "pypath.inputs.tcdb.tcdb_families"]], "pypath.inputs.tfcensus": [[775, "module-pypath.inputs.tfcensus"]], "tfcensus_annotations() (in module pypath.inputs.tfcensus)": [[776, "pypath.inputs.tfcensus.tfcensus_annotations"]], "pypath.inputs.threedcomplex": [[777, "module-pypath.inputs.threedcomplex"]], "threedcomplex_chains() (in module pypath.inputs.threedcomplex)": [[778, "pypath.inputs.threedcomplex.threedcomplex_chains"]], "threedcomplex_complexes() (in module pypath.inputs.threedcomplex)": [[779, "pypath.inputs.threedcomplex.threedcomplex_complexes"]], "threedcomplex_contacts() (in module pypath.inputs.threedcomplex)": [[780, "pypath.inputs.threedcomplex.threedcomplex_contacts"]], "threedcomplex_ddi() (in module pypath.inputs.threedcomplex)": [[781, "pypath.inputs.threedcomplex.threedcomplex_ddi"]], "threedcomplex_nresidues() (in module pypath.inputs.threedcomplex)": [[782, "pypath.inputs.threedcomplex.threedcomplex_nresidues"]], "pypath.inputs.threedid": [[783, "module-pypath.inputs.threedid"]], "get_3did() (in module pypath.inputs.threedid)": [[784, "pypath.inputs.threedid.get_3did"]], "get_3did_ddi() (in module pypath.inputs.threedid)": [[785, "pypath.inputs.threedid.get_3did_ddi"]], "get_3did_dmi() (in module pypath.inputs.threedid)": [[786, "pypath.inputs.threedid.get_3did_dmi"]], "process_3did_dmi() (in module pypath.inputs.threedid)": [[787, "pypath.inputs.threedid.process_3did_dmi"]], "pypath.inputs.topdb": [[788, "module-pypath.inputs.topdb"]], "topdb_annotations() (in module pypath.inputs.topdb)": [[789, "pypath.inputs.topdb.topdb_annotations"]], "pypath.inputs.transmir": [[790, "module-pypath.inputs.transmir"]], "transmir_interactions() (in module pypath.inputs.transmir)": [[791, "pypath.inputs.transmir.transmir_interactions"]], "pypath.inputs.trip": [[792, "module-pypath.inputs.trip"]], "take_a_trip() (in module pypath.inputs.trip)": [[793, "pypath.inputs.trip.take_a_trip"]], "trip_find_uniprot() (in module pypath.inputs.trip)": [[794, "pypath.inputs.trip.trip_find_uniprot"]], "trip_get_uniprot() (in module pypath.inputs.trip)": [[795, "pypath.inputs.trip.trip_get_uniprot"]], "trip_interactions() (in module pypath.inputs.trip)": [[796, "pypath.inputs.trip.trip_interactions"]], "trip_process() (in module pypath.inputs.trip)": [[797, "pypath.inputs.trip.trip_process"]], "trip_process_table() (in module pypath.inputs.trip)": [[798, "pypath.inputs.trip.trip_process_table"]], "pypath.inputs.trrust": [[799, "module-pypath.inputs.trrust"]], "trrust_human() (in module pypath.inputs.trrust)": [[800, "pypath.inputs.trrust.trrust_human"]], "trrust_interactions() (in module pypath.inputs.trrust)": [[801, "pypath.inputs.trrust.trrust_interactions"]], "trrust_mouse() (in module pypath.inputs.trrust)": [[802, "pypath.inputs.trrust.trrust_mouse"]], "pypath.inputs.twosides": [[803, "module-pypath.inputs.twosides"]], "twosides_interactions() (in module pypath.inputs.twosides)": [[804, "pypath.inputs.twosides.twosides_interactions"]], "pypath.inputs.unichem": [[805, "module-pypath.inputs.unichem"]], "info() (in module pypath.inputs.unichem)": [[806, "pypath.inputs.unichem.info"]], "unichem_info() (in module pypath.inputs.unichem)": [[807, "pypath.inputs.unichem.unichem_info"]], "unichem_mapping() (in module pypath.inputs.unichem)": [[808, "pypath.inputs.unichem.unichem_mapping"]], "unichem_sources() (in module pypath.inputs.unichem)": [[809, "pypath.inputs.unichem.unichem_sources"]], "pypath.inputs.uniprot": [[810, "module-pypath.inputs.uniprot"]], "taxon (class in pypath.inputs.uniprot)": [[811, "pypath.inputs.uniprot.Taxon"]], "__init__() (pypath.inputs.uniprot.taxon method)": [[811, "pypath.inputs.uniprot.Taxon.__init__"]], "count() (pypath.inputs.uniprot.taxon method)": [[811, "pypath.inputs.uniprot.Taxon.count"]], "english (pypath.inputs.uniprot.taxon attribute)": [[811, "pypath.inputs.uniprot.Taxon.english"]], "index() (pypath.inputs.uniprot.taxon method)": [[811, "pypath.inputs.uniprot.Taxon.index"]], "latin (pypath.inputs.uniprot.taxon attribute)": [[811, "pypath.inputs.uniprot.Taxon.latin"]], "latin_synonym (pypath.inputs.uniprot.taxon attribute)": [[811, "pypath.inputs.uniprot.Taxon.latin_synonym"]], "ncbi_id (pypath.inputs.uniprot.taxon attribute)": [[811, "pypath.inputs.uniprot.Taxon.ncbi_id"]], "uniprotquery (class in pypath.inputs.uniprot)": [[812, "pypath.inputs.uniprot.UniprotQuery"]], "__init__() (pypath.inputs.uniprot.uniprotquery method)": [[812, "pypath.inputs.uniprot.UniprotQuery.__init__"]], "__iter__() (pypath.inputs.uniprot.uniprotquery method)": [[812, "pypath.inputs.uniprot.UniprotQuery.__iter__"]], "fail_on_empty (pypath.inputs.uniprot.uniprotquery attribute)": [[812, "pypath.inputs.uniprot.UniprotQuery.fail_on_empty"]], "name_process (pypath.inputs.uniprot.uniprotquery attribute)": [[812, "pypath.inputs.uniprot.UniprotQuery.name_process"]], "perform() (pypath.inputs.uniprot.uniprotquery method)": [[812, "pypath.inputs.uniprot.UniprotQuery.perform"]], "url (pypath.inputs.uniprot.uniprotquery property)": [[812, "pypath.inputs.uniprot.UniprotQuery.url"]], "url_plain (pypath.inputs.uniprot.uniprotquery property)": [[812, "pypath.inputs.uniprot.UniprotQuery.url_plain"]], "uniprotrecordhistory (class in pypath.inputs.uniprot)": [[813, "pypath.inputs.uniprot.UniprotRecordHistory"]], "__init__() (pypath.inputs.uniprot.uniprotrecordhistory method)": [[813, "pypath.inputs.uniprot.UniprotRecordHistory.__init__"]], "count() (pypath.inputs.uniprot.uniprotrecordhistory method)": [[813, "pypath.inputs.uniprot.UniprotRecordHistory.count"]], "database (pypath.inputs.uniprot.uniprotrecordhistory attribute)": [[813, "pypath.inputs.uniprot.UniprotRecordHistory.database"]], "date (pypath.inputs.uniprot.uniprotrecordhistory attribute)": [[813, "pypath.inputs.uniprot.UniprotRecordHistory.date"]], "entry_name (pypath.inputs.uniprot.uniprotrecordhistory attribute)": [[813, "pypath.inputs.uniprot.UniprotRecordHistory.entry_name"]], "entry_version (pypath.inputs.uniprot.uniprotrecordhistory attribute)": [[813, "pypath.inputs.uniprot.UniprotRecordHistory.entry_version"]], "index() (pypath.inputs.uniprot.uniprotrecordhistory method)": [[813, "pypath.inputs.uniprot.UniprotRecordHistory.index"]], "number (pypath.inputs.uniprot.uniprotrecordhistory attribute)": [[813, "pypath.inputs.uniprot.UniprotRecordHistory.number"]], "replaced_by (pypath.inputs.uniprot.uniprotrecordhistory attribute)": [[813, "pypath.inputs.uniprot.UniprotRecordHistory.replaced_by"]], "replaces (pypath.inputs.uniprot.uniprotrecordhistory attribute)": [[813, "pypath.inputs.uniprot.UniprotRecordHistory.replaces"]], "sequence_version (pypath.inputs.uniprot.uniprotrecordhistory attribute)": [[813, "pypath.inputs.uniprot.UniprotRecordHistory.sequence_version"]], "deleted_uniprot_genesymbol() (in module pypath.inputs.uniprot)": [[814, "pypath.inputs.uniprot.deleted_uniprot_genesymbol"]], "get_uniprot_sec() (in module pypath.inputs.uniprot)": [[815, "pypath.inputs.uniprot.get_uniprot_sec"]], "idmapping_idtypes() (in module pypath.inputs.uniprot)": [[816, "pypath.inputs.uniprot.idmapping_idtypes"]], "protein_datasheet() (in module pypath.inputs.uniprot)": [[817, "pypath.inputs.uniprot.protein_datasheet"]], "query_builder() (in module pypath.inputs.uniprot)": [[818, "pypath.inputs.uniprot.query_builder"]], "swissprot_deleted() (in module pypath.inputs.uniprot)": [[819, "pypath.inputs.uniprot.swissprot_deleted"]], "trembl_deleted() (in module pypath.inputs.uniprot)": [[820, "pypath.inputs.uniprot.trembl_deleted"]], "uniprot_data() (in module pypath.inputs.uniprot)": [[821, "pypath.inputs.uniprot.uniprot_data"]], "uniprot_deleted() (in module pypath.inputs.uniprot)": [[822, "pypath.inputs.uniprot.uniprot_deleted"]], "uniprot_families() (in module pypath.inputs.uniprot)": [[823, "pypath.inputs.uniprot.uniprot_families"]], "uniprot_history() (in module pypath.inputs.uniprot)": [[824, "pypath.inputs.uniprot.uniprot_history"]], "uniprot_history_recent_datasheet() (in module pypath.inputs.uniprot)": [[825, "pypath.inputs.uniprot.uniprot_history_recent_datasheet"]], "uniprot_keywords() (in module pypath.inputs.uniprot)": [[826, "pypath.inputs.uniprot.uniprot_keywords"]], "uniprot_locations() (in module pypath.inputs.uniprot)": [[827, "pypath.inputs.uniprot.uniprot_locations"]], "uniprot_ncbi_taxids() (in module pypath.inputs.uniprot)": [[828, "pypath.inputs.uniprot.uniprot_ncbi_taxids"]], "uniprot_ncbi_taxids_2() (in module pypath.inputs.uniprot)": [[829, "pypath.inputs.uniprot.uniprot_ncbi_taxids_2"]], "uniprot_preprocess() (in module pypath.inputs.uniprot)": [[830, "pypath.inputs.uniprot.uniprot_preprocess"]], "uniprot_query() (in module pypath.inputs.uniprot)": [[831, "pypath.inputs.uniprot.uniprot_query"]], "uniprot_recent_version() (in module pypath.inputs.uniprot)": [[832, "pypath.inputs.uniprot.uniprot_recent_version"]], "uniprot_taxonomy() (in module pypath.inputs.uniprot)": [[833, "pypath.inputs.uniprot.uniprot_taxonomy"]], "uniprot_tissues() (in module pypath.inputs.uniprot)": [[834, "pypath.inputs.uniprot.uniprot_tissues"]], "uniprot_topology() (in module pypath.inputs.uniprot)": [[835, "pypath.inputs.uniprot.uniprot_topology"]], "valid_uniprot() (in module pypath.inputs.uniprot)": [[836, "pypath.inputs.uniprot.valid_uniprot"]], "pypath.inputs.uniprot_db": [[837, "module-pypath.inputs.uniprot_db"]], "all_swissprots() (in module pypath.inputs.uniprot_db)": [[838, "pypath.inputs.uniprot_db.all_swissprots"]], "all_trembls() (in module pypath.inputs.uniprot_db)": [[839, "pypath.inputs.uniprot_db.all_trembls"]], "all_uniprots() (in module pypath.inputs.uniprot_db)": [[840, "pypath.inputs.uniprot_db.all_uniprots"]], "get_db() (in module pypath.inputs.uniprot_db)": [[841, "pypath.inputs.uniprot_db.get_db"]], "init_db() (in module pypath.inputs.uniprot_db)": [[842, "pypath.inputs.uniprot_db.init_db"]], "is_swissprot() (in module pypath.inputs.uniprot_db)": [[843, "pypath.inputs.uniprot_db.is_swissprot"]], "is_trembl() (in module pypath.inputs.uniprot_db)": [[844, "pypath.inputs.uniprot_db.is_trembl"]], "is_uniprot() (in module pypath.inputs.uniprot_db)": [[845, "pypath.inputs.uniprot_db.is_uniprot"]], "pypath.inputs.wang": [[846, "module-pypath.inputs.wang"]], "cui_interactions() (in module pypath.inputs.wang)": [[847, "pypath.inputs.wang.cui_interactions"]], "hsn_interactions() (in module pypath.inputs.wang)": [[848, "pypath.inputs.wang.hsn_interactions"]], "wang_annotations() (in module pypath.inputs.wang)": [[849, "pypath.inputs.wang.wang_annotations"]], "wang_interactions() (in module pypath.inputs.wang)": [[850, "pypath.inputs.wang.wang_interactions"]], "pypath.inputs.wojtowicz2020": [[851, "module-pypath.inputs.wojtowicz2020"]], "wojtowicz2020_interactions() (in module pypath.inputs.wojtowicz2020)": [[852, "pypath.inputs.wojtowicz2020.wojtowicz2020_interactions"]], "wojtowicz2020_raw() (in module pypath.inputs.wojtowicz2020)": [[853, "pypath.inputs.wojtowicz2020.wojtowicz2020_raw"]], "pypath.inputs.zhong2015": [[854, "module-pypath.inputs.zhong2015"]], "zhong2015_annotations() (in module pypath.inputs.zhong2015)": [[855, "pypath.inputs.zhong2015.zhong2015_annotations"]], "pypath.internals": [[856, "module-pypath.internals"]], "pypath.internals.annot_formats": [[857, "module-pypath.internals.annot_formats"]], "annotdef (class in pypath.internals.annot_formats)": [[858, "pypath.internals.annot_formats.AnnotDef"]], "__init__() (pypath.internals.annot_formats.annotdef method)": [[858, "pypath.internals.annot_formats.AnnotDef.__init__"]], "args (pypath.internals.annot_formats.annotdef attribute)": [[858, "pypath.internals.annot_formats.AnnotDef.args"]], "aspect (pypath.internals.annot_formats.annotdef attribute)": [[858, "pypath.internals.annot_formats.AnnotDef.aspect"]], "avoid (pypath.internals.annot_formats.annotdef attribute)": [[858, "pypath.internals.annot_formats.AnnotDef.avoid"]], "count() (pypath.internals.annot_formats.annotdef method)": [[858, "pypath.internals.annot_formats.AnnotDef.count"]], "enabled (pypath.internals.annot_formats.annotdef attribute)": [[858, "pypath.internals.annot_formats.AnnotDef.enabled"]], "exclude (pypath.internals.annot_formats.annotdef attribute)": [[858, "pypath.internals.annot_formats.AnnotDef.exclude"]], "index() (pypath.internals.annot_formats.annotdef method)": [[858, "pypath.internals.annot_formats.AnnotDef.index"]], "limit (pypath.internals.annot_formats.annotdef attribute)": [[858, "pypath.internals.annot_formats.AnnotDef.limit"]], "name (pypath.internals.annot_formats.annotdef attribute)": [[858, "pypath.internals.annot_formats.AnnotDef.name"]], "parent (pypath.internals.annot_formats.annotdef attribute)": [[858, "pypath.internals.annot_formats.AnnotDef.parent"]], "receiver (pypath.internals.annot_formats.annotdef attribute)": [[858, "pypath.internals.annot_formats.AnnotDef.receiver"]], "resource (pypath.internals.annot_formats.annotdef attribute)": [[858, "pypath.internals.annot_formats.AnnotDef.resource"]], "resource_name (pypath.internals.annot_formats.annotdef attribute)": [[858, "pypath.internals.annot_formats.AnnotDef.resource_name"]], "scope (pypath.internals.annot_formats.annotdef attribute)": [[858, "pypath.internals.annot_formats.AnnotDef.scope"]], "source (pypath.internals.annot_formats.annotdef attribute)": [[858, "pypath.internals.annot_formats.AnnotDef.source"]], "transmitter (pypath.internals.annot_formats.annotdef attribute)": [[858, "pypath.internals.annot_formats.AnnotDef.transmitter"]], "annotdefkey (class in pypath.internals.annot_formats)": [[859, "pypath.internals.annot_formats.AnnotDefKey"]], "__init__() (pypath.internals.annot_formats.annotdefkey method)": [[859, "pypath.internals.annot_formats.AnnotDefKey.__init__"]], "count() (pypath.internals.annot_formats.annotdefkey method)": [[859, "pypath.internals.annot_formats.AnnotDefKey.count"]], "index() (pypath.internals.annot_formats.annotdefkey method)": [[859, "pypath.internals.annot_formats.AnnotDefKey.index"]], "name (pypath.internals.annot_formats.annotdefkey attribute)": [[859, "pypath.internals.annot_formats.AnnotDefKey.name"]], "parent (pypath.internals.annot_formats.annotdefkey attribute)": [[859, "pypath.internals.annot_formats.AnnotDefKey.parent"]], "resource (pypath.internals.annot_formats.annotdefkey attribute)": [[859, "pypath.internals.annot_formats.AnnotDefKey.resource"]], "annotop (class in pypath.internals.annot_formats)": [[860, "pypath.internals.annot_formats.AnnotOp"]], "__init__() (pypath.internals.annot_formats.annotop method)": [[860, "pypath.internals.annot_formats.AnnotOp.__init__"]], "annots (pypath.internals.annot_formats.annotop attribute)": [[860, "pypath.internals.annot_formats.AnnotOp.annots"]], "count() (pypath.internals.annot_formats.annotop method)": [[860, "pypath.internals.annot_formats.AnnotOp.count"]], "index() (pypath.internals.annot_formats.annotop method)": [[860, "pypath.internals.annot_formats.AnnotOp.index"]], "op (pypath.internals.annot_formats.annotop attribute)": [[860, "pypath.internals.annot_formats.AnnotOp.op"]], "annotationgroup (class in pypath.internals.annot_formats)": [[861, "pypath.internals.annot_formats.AnnotationGroup"]], "__init__() (pypath.internals.annot_formats.annotationgroup method)": [[861, "pypath.internals.annot_formats.AnnotationGroup.__init__"]], "filter_entity_type() (pypath.internals.annot_formats.annotationgroup method)": [[861, "pypath.internals.annot_formats.AnnotationGroup.filter_entity_type"]], "isdisjoint() (pypath.internals.annot_formats.annotationgroup class method)": [[861, "pypath.internals.annot_formats.AnnotationGroup.isdisjoint"]], "pypath.internals.input_formats": [[862, "module-pypath.internals.input_formats"]], "arraymapping (class in pypath.internals.input_formats)": [[863, "pypath.internals.input_formats.ArrayMapping"]], "__init__() (pypath.internals.input_formats.arraymapping method)": [[863, "pypath.internals.input_formats.ArrayMapping.__init__"]], "biomartmapping (class in pypath.internals.input_formats)": [[864, "pypath.internals.input_formats.BiomartMapping"]], "__init__() (pypath.internals.input_formats.biomartmapping method)": [[864, "pypath.internals.input_formats.BiomartMapping.__init__"]], "filemapping (class in pypath.internals.input_formats)": [[865, "pypath.internals.input_formats.FileMapping"]], "__init__() (pypath.internals.input_formats.filemapping method)": [[865, "pypath.internals.input_formats.FileMapping.__init__"]], "hmdbmapping (class in pypath.internals.input_formats)": [[866, "pypath.internals.input_formats.HmdbMapping"]], "__init__() (pypath.internals.input_formats.hmdbmapping method)": [[866, "pypath.internals.input_formats.HmdbMapping.__init__"]], "mappinginput (class in pypath.internals.input_formats)": [[867, "pypath.internals.input_formats.MappingInput"]], "__init__() (pypath.internals.input_formats.mappinginput method)": [[867, "pypath.internals.input_formats.MappingInput.__init__"]], "networkinput (class in pypath.internals.input_formats)": [[868, "pypath.internals.input_formats.NetworkInput"]], "__init__() (pypath.internals.input_formats.networkinput method)": [[868, "pypath.internals.input_formats.NetworkInput.__init__"]], "picklemapping (class in pypath.internals.input_formats)": [[869, "pypath.internals.input_formats.PickleMapping"]], "__init__() (pypath.internals.input_formats.picklemapping method)": [[869, "pypath.internals.input_formats.PickleMapping.__init__"]], "promapping (class in pypath.internals.input_formats)": [[870, "pypath.internals.input_formats.ProMapping"]], "__init__() (pypath.internals.input_formats.promapping method)": [[870, "pypath.internals.input_formats.ProMapping.__init__"]], "rampmapping (class in pypath.internals.input_formats)": [[871, "pypath.internals.input_formats.RampMapping"]], "__init__() (pypath.internals.input_formats.rampmapping method)": [[871, "pypath.internals.input_formats.RampMapping.__init__"]], "readlist (class in pypath.internals.input_formats)": [[872, "pypath.internals.input_formats.ReadList"]], "__init__() (pypath.internals.input_formats.readlist method)": [[872, "pypath.internals.input_formats.ReadList.__init__"]], "unichemmapping (class in pypath.internals.input_formats)": [[873, "pypath.internals.input_formats.UnichemMapping"]], "__init__() (pypath.internals.input_formats.unichemmapping method)": [[873, "pypath.internals.input_formats.UnichemMapping.__init__"]], "uniprotlistmapping (class in pypath.internals.input_formats)": [[874, "pypath.internals.input_formats.UniprotListMapping"]], "__init__() (pypath.internals.input_formats.uniprotlistmapping method)": [[874, "pypath.internals.input_formats.UniprotListMapping.__init__"]], "uniprotmapping (class in pypath.internals.input_formats)": [[875, "pypath.internals.input_formats.UniprotMapping"]], "__init__() (pypath.internals.input_formats.uniprotmapping method)": [[875, "pypath.internals.input_formats.UniprotMapping.__init__"]], "resource_id_type() (pypath.internals.input_formats.uniprotmapping static method)": [[875, "pypath.internals.input_formats.UniprotMapping.resource_id_type"]], "pypath.internals.intera": [[876, "module-pypath.internals.intera"]], "complex (class in pypath.internals.intera)": [[877, "pypath.internals.intera.Complex"]], "__init__() (pypath.internals.intera.complex method)": [[877, "pypath.internals.intera.Complex.__init__"]], "add_attr() (pypath.internals.intera.complex method)": [[877, "pypath.internals.intera.Complex.add_attr"]], "merge() (pypath.internals.intera.complex method)": [[877, "pypath.internals.intera.Complex.merge"]], "domain (class in pypath.internals.intera)": [[878, "pypath.internals.intera.Domain"]], "__init__() (pypath.internals.intera.domain method)": [[878, "pypath.internals.intera.Domain.__init__"]], "domaindomain (class in pypath.internals.intera)": [[879, "pypath.internals.intera.DomainDomain"]], "__init__() (pypath.internals.intera.domaindomain method)": [[879, "pypath.internals.intera.DomainDomain.__init__"]], "domainmotif (class in pypath.internals.intera)": [[880, "pypath.internals.intera.DomainMotif"]], "__init__() (pypath.internals.intera.domainmotif method)": [[880, "pypath.internals.intera.DomainMotif.__init__"]], "get_line() (pypath.internals.intera.domainmotif method)": [[880, "pypath.internals.intera.DomainMotif.get_line"]], "key() (pypath.internals.intera.domainmotif method)": [[880, "pypath.internals.intera.DomainMotif.key"]], "interface (class in pypath.internals.intera)": [[881, "pypath.internals.intera.Interface"]], "__init__() (pypath.internals.intera.interface method)": [[881, "pypath.internals.intera.Interface.__init__"]], "add_residues() (pypath.internals.intera.interface method)": [[881, "pypath.internals.intera.Interface.add_residues"]], "bond_types() (pypath.internals.intera.interface method)": [[881, "pypath.internals.intera.Interface.bond_types"]], "get_bonds() (pypath.internals.intera.interface method)": [[881, "pypath.internals.intera.Interface.get_bonds"]], "numof_residues() (pypath.internals.intera.interface method)": [[881, "pypath.internals.intera.Interface.numof_residues"]], "motif (class in pypath.internals.intera)": [[882, "pypath.internals.intera.Motif"]], "__init__() (pypath.internals.intera.motif method)": [[882, "pypath.internals.intera.Motif.__init__"]], "ptm (class in pypath.internals.intera)": [[883, "pypath.internals.intera.Ptm"]], "__init__() (pypath.internals.intera.ptm method)": [[883, "pypath.internals.intera.Ptm.__init__"]], "regulation (class in pypath.internals.intera)": [[884, "pypath.internals.intera.Regulation"]], "__init__() (pypath.internals.intera.regulation method)": [[884, "pypath.internals.intera.Regulation.__init__"]], "residue (class in pypath.internals.intera)": [[885, "pypath.internals.intera.Residue"]], "__init__() (pypath.internals.intera.residue method)": [[885, "pypath.internals.intera.Residue.__init__"]], "pypath.internals.license": [[886, "module-pypath.internals.license"]], "license (class in pypath.internals.license)": [[887, "pypath.internals.license.License"]], "__init__() (pypath.internals.license.license method)": [[887, "pypath.internals.license.License.__init__"]], "enables() (pypath.internals.license.license method)": [[887, "pypath.internals.license.License.enables"]], "licenseattrib (class in pypath.internals.license)": [[888, "pypath.internals.license.LicenseAttrib"]], "__init__() (pypath.internals.license.licenseattrib method)": [[888, "pypath.internals.license.LicenseAttrib.__init__"]], "check_level() (pypath.internals.license.licenseattrib class method)": [[888, "pypath.internals.license.LicenseAttrib.check_level"]], "int_to_level() (pypath.internals.license.licenseattrib class method)": [[888, "pypath.internals.license.LicenseAttrib.int_to_level"]], "level_to_int() (pypath.internals.license.licenseattrib class method)": [[888, "pypath.internals.license.LicenseAttrib.level_to_int"]], "to_int() (pypath.internals.license.licenseattrib method)": [[888, "pypath.internals.license.LicenseAttrib.to_int"]], "licensefeature (class in pypath.internals.license)": [[889, "pypath.internals.license.LicenseFeature"]], "__init__() (pypath.internals.license.licensefeature method)": [[889, "pypath.internals.license.LicenseFeature.__init__"]], "check_level() (pypath.internals.license.licensefeature class method)": [[889, "pypath.internals.license.LicenseFeature.check_level"]], "int_to_level() (pypath.internals.license.licensefeature class method)": [[889, "pypath.internals.license.LicenseFeature.int_to_level"]], "level_to_int() (pypath.internals.license.licensefeature class method)": [[889, "pypath.internals.license.LicenseFeature.level_to_int"]], "to_int() (pypath.internals.license.licensefeature method)": [[889, "pypath.internals.license.LicenseFeature.to_int"]], "licensepurpose (class in pypath.internals.license)": [[890, "pypath.internals.license.LicensePurpose"]], "__init__() (pypath.internals.license.licensepurpose method)": [[890, "pypath.internals.license.LicensePurpose.__init__"]], "check_level() (pypath.internals.license.licensepurpose class method)": [[890, "pypath.internals.license.LicensePurpose.check_level"]], "int_to_level() (pypath.internals.license.licensepurpose class method)": [[890, "pypath.internals.license.LicensePurpose.int_to_level"]], "level_to_int() (pypath.internals.license.licensepurpose class method)": [[890, "pypath.internals.license.LicensePurpose.level_to_int"]], "to_int() (pypath.internals.license.licensepurpose method)": [[890, "pypath.internals.license.LicensePurpose.to_int"]], "licensesharing (class in pypath.internals.license)": [[891, "pypath.internals.license.LicenseSharing"]], "__init__() (pypath.internals.license.licensesharing method)": [[891, "pypath.internals.license.LicenseSharing.__init__"]], "check_level() (pypath.internals.license.licensesharing class method)": [[891, "pypath.internals.license.LicenseSharing.check_level"]], "int_to_level() (pypath.internals.license.licensesharing class method)": [[891, "pypath.internals.license.LicenseSharing.int_to_level"]], "level_to_int() (pypath.internals.license.licensesharing class method)": [[891, "pypath.internals.license.LicenseSharing.level_to_int"]], "to_int() (pypath.internals.license.licensesharing method)": [[891, "pypath.internals.license.LicenseSharing.to_int"]], "pypath.internals.maps": [[892, "module-pypath.internals.maps"]], "pypath.internals.refs": [[893, "module-pypath.internals.refs"]], "reference (class in pypath.internals.refs)": [[894, "pypath.internals.refs.Reference"]], "__init__() (pypath.internals.refs.reference method)": [[894, "pypath.internals.refs.Reference.__init__"]], "get_pubmed_data() (in module pypath.internals.refs)": [[895, "pypath.internals.refs.get_pubmed_data"]], "pypath.internals.resource": [[896, "module-pypath.internals.resource"]], "abstractresource (class in pypath.internals.resource)": [[897, "pypath.internals.resource.AbstractResource"]], "__init__() (pypath.internals.resource.abstractresource method)": [[897, "pypath.internals.resource.AbstractResource.__init__"]], "load_data() (pypath.internals.resource.abstractresource method)": [[897, "pypath.internals.resource.AbstractResource.load_data"]], "process() (pypath.internals.resource.abstractresource method)": [[897, "pypath.internals.resource.AbstractResource.process"]], "set_method() (pypath.internals.resource.abstractresource method)": [[897, "pypath.internals.resource.AbstractResource.set_method"]], "enzymesubstrateresource (class in pypath.internals.resource)": [[898, "pypath.internals.resource.EnzymeSubstrateResource"]], "__init__() (pypath.internals.resource.enzymesubstrateresource method)": [[898, "pypath.internals.resource.EnzymeSubstrateResource.__init__"]], "get_via() (pypath.internals.resource.enzymesubstrateresource method)": [[898, "pypath.internals.resource.EnzymeSubstrateResource.get_via"]], "enzymesubstrateresourcekey (class in pypath.internals.resource)": [[899, "pypath.internals.resource.EnzymeSubstrateResourceKey"]], "__init__() (pypath.internals.resource.enzymesubstrateresourcekey method)": [[899, "pypath.internals.resource.EnzymeSubstrateResourceKey.__init__"]], "count() (pypath.internals.resource.enzymesubstrateresourcekey method)": [[899, "pypath.internals.resource.EnzymeSubstrateResourceKey.count"]], "data_type (pypath.internals.resource.enzymesubstrateresourcekey attribute)": [[899, "pypath.internals.resource.EnzymeSubstrateResourceKey.data_type"]], "index() (pypath.internals.resource.enzymesubstrateresourcekey method)": [[899, "pypath.internals.resource.EnzymeSubstrateResourceKey.index"]], "name (pypath.internals.resource.enzymesubstrateresourcekey attribute)": [[899, "pypath.internals.resource.EnzymeSubstrateResourceKey.name"]], "via (pypath.internals.resource.enzymesubstrateresourcekey attribute)": [[899, "pypath.internals.resource.EnzymeSubstrateResourceKey.via"]], "networkdataset (class in pypath.internals.resource)": [[900, "pypath.internals.resource.NetworkDataset"]], "__init__() (pypath.internals.resource.networkdataset method)": [[900, "pypath.internals.resource.NetworkDataset.__init__"]], "clear() (pypath.internals.resource.networkdataset method)": [[900, "pypath.internals.resource.NetworkDataset.clear"]], "get() (pypath.internals.resource.networkdataset method)": [[900, "pypath.internals.resource.NetworkDataset.get"]], "items() (pypath.internals.resource.networkdataset method)": [[900, "pypath.internals.resource.NetworkDataset.items"]], "keys() (pypath.internals.resource.networkdataset method)": [[900, "pypath.internals.resource.NetworkDataset.keys"]], "pop() (pypath.internals.resource.networkdataset method)": [[900, "pypath.internals.resource.NetworkDataset.pop"]], "popitem() (pypath.internals.resource.networkdataset method)": [[900, "pypath.internals.resource.NetworkDataset.popitem"]], "setdefault() (pypath.internals.resource.networkdataset method)": [[900, "pypath.internals.resource.NetworkDataset.setdefault"]], "update() (pypath.internals.resource.networkdataset method)": [[900, "pypath.internals.resource.NetworkDataset.update"]], "values() (pypath.internals.resource.networkdataset method)": [[900, "pypath.internals.resource.NetworkDataset.values"]], "networkresource (class in pypath.internals.resource)": [[901, "pypath.internals.resource.NetworkResource"]], "__init__() (pypath.internals.resource.networkresource method)": [[901, "pypath.internals.resource.NetworkResource.__init__"]], "networkresourcekey (class in pypath.internals.resource)": [[902, "pypath.internals.resource.NetworkResourceKey"]], "__init__() (pypath.internals.resource.networkresourcekey method)": [[902, "pypath.internals.resource.NetworkResourceKey.__init__"]], "count() (pypath.internals.resource.networkresourcekey method)": [[902, "pypath.internals.resource.NetworkResourceKey.count"]], "data_model (pypath.internals.resource.networkresourcekey attribute)": [[902, "pypath.internals.resource.NetworkResourceKey.data_model"]], "data_type (pypath.internals.resource.networkresourcekey attribute)": [[902, "pypath.internals.resource.NetworkResourceKey.data_type"]], "index() (pypath.internals.resource.networkresourcekey method)": [[902, "pypath.internals.resource.NetworkResourceKey.index"]], "interaction_type (pypath.internals.resource.networkresourcekey attribute)": [[902, "pypath.internals.resource.NetworkResourceKey.interaction_type"]], "label (pypath.internals.resource.networkresourcekey property)": [[902, "pypath.internals.resource.NetworkResourceKey.label"]], "last (pypath.internals.resource.networkresourcekey property)": [[902, "pypath.internals.resource.NetworkResourceKey.last"]], "name (pypath.internals.resource.networkresourcekey attribute)": [[902, "pypath.internals.resource.NetworkResourceKey.name"]], "via (pypath.internals.resource.networkresourcekey attribute)": [[902, "pypath.internals.resource.NetworkResourceKey.via"]], "resourceattributes (class in pypath.internals.resource)": [[903, "pypath.internals.resource.ResourceAttributes"]], "__init__() (pypath.internals.resource.resourceattributes method)": [[903, "pypath.internals.resource.ResourceAttributes.__init__"]], "pypath.legacy": [[904, "module-pypath.legacy"]], "pypath.legacy.db_categories": [[905, "module-pypath.legacy.db_categories"]], "get_categories() (in module pypath.legacy.db_categories)": [[906, "pypath.legacy.db_categories.get_categories"]], "get_category() (in module pypath.legacy.db_categories)": [[907, "pypath.legacy.db_categories.get_category"]], "log() (in module pypath)": [[908, "pypath.log"]], "pypath.resources": [[909, "module-pypath.resources"]], "pypath.resources.controller": [[910, "module-pypath.resources.controller"]], "resourcecontroller (class in pypath.resources.controller)": [[911, "pypath.resources.controller.ResourceController"]], "__init__() (pypath.resources.controller.resourcecontroller method)": [[911, "pypath.resources.controller.ResourceController.__init__"]], "add_resource_attrs() (pypath.resources.controller.resourcecontroller method)": [[911, "pypath.resources.controller.ResourceController.add_resource_attrs"]], "collect_interaction() (pypath.resources.controller.resourcecontroller method)": [[911, "pypath.resources.controller.ResourceController.collect_interaction"]], "collect_network() (pypath.resources.controller.resourcecontroller method)": [[911, "pypath.resources.controller.ResourceController.collect_network"]], "license_filter() (pypath.resources.controller.resourcecontroller method)": [[911, "pypath.resources.controller.ResourceController.license_filter"]], "secondary_resources() (pypath.resources.controller.resourcecontroller method)": [[911, "pypath.resources.controller.ResourceController.secondary_resources"]], "update() (pypath.resources.controller.resourcecontroller method)": [[911, "pypath.resources.controller.ResourceController.update"]], "pypath.resources.data": [[912, "module-pypath.resources.data"]], "pypath.resources.data_formats": [[913, "module-pypath.resources.data_formats"]], "activity_flow (in module pypath.resources.data_formats)": [[914, "pypath.resources.data_formats.activity_flow"]], "enzyme_substrate (in module pypath.resources.data_formats)": [[915, "pypath.resources.data_formats.enzyme_substrate"]], "interaction (in module pypath.resources.data_formats)": [[916, "pypath.resources.data_formats.interaction"]], "interaction_htp (in module pypath.resources.data_formats)": [[917, "pypath.resources.data_formats.interaction_htp"]], "pathway_bad (in module pypath.resources.data_formats)": [[918, "pypath.resources.data_formats.pathway_bad"]], "reaction_pc (in module pypath.resources.data_formats)": [[919, "pypath.resources.data_formats.reaction_pc"]], "transcription_deprecated (in module pypath.resources.data_formats)": [[920, "pypath.resources.data_formats.transcription_deprecated"]], "transcription_onebyone (in module pypath.resources.data_formats)": [[921, "pypath.resources.data_formats.transcription_onebyone"]], "get_controller() (in module pypath.resources)": [[922, "pypath.resources.get_controller"]], "pypath.resources.licenses": [[923, "module-pypath.resources.licenses"]], "licenses (class in pypath.resources.licenses)": [[924, "pypath.resources.licenses.Licenses"]], "__init__() (pypath.resources.licenses.licenses method)": [[924, "pypath.resources.licenses.Licenses.__init__"]], "pypath.resources.network": [[925, "module-pypath.resources.network"]], "choose_dataset() (in module pypath.resources.network)": [[926, "pypath.resources.network.choose_dataset"]], "dataset_priority() (in module pypath.resources.network)": [[927, "pypath.resources.network.dataset_priority"]], "dorothea_expand_levels() (in module pypath.resources.network)": [[928, "pypath.resources.network.dorothea_expand_levels"]], "pypath.resources.urls": [[929, "module-pypath.resources.urls"]], "pypath.share": [[930, "module-pypath.share"]], "pypath.share.cache": [[931, "module-pypath.share.cache"]], "cache_item() (in module pypath.share.cache)": [[932, "pypath.share.cache.cache_item"]], "cache_path() (in module pypath.share.cache)": [[933, "pypath.share.cache.cache_path"]], "default_cachedir() (in module pypath.share.cache)": [[934, "pypath.share.cache.default_cachedir"]], "get_cachedir() (in module pypath.share.cache)": [[935, "pypath.share.cache.get_cachedir"]], "pypath.share.common": [[936, "module-pypath.share.common"]], "pypath.share.constants": [[937, "module-pypath.share.constants"]], "pypath.share.curl": [[938, "module-pypath.share.curl"]], "curl (class in pypath.share.curl)": [[939, "pypath.share.curl.Curl"]], "__init__() (pypath.share.curl.curl method)": [[939, "pypath.share.curl.Curl.__init__"]], "cache_path() (pypath.share.curl.curl class method)": [[939, "pypath.share.curl.Curl.cache_path"]], "close() (pypath.share.curl.curl method)": [[939, "pypath.share.curl.Curl.close"]], "construct_binary_data() (pypath.share.curl.curl method)": [[939, "pypath.share.curl.Curl.construct_binary_data"]], "extract() (pypath.share.curl.curl method)": [[939, "pypath.share.curl.Curl.extract"]], "is_quoted() (pypath.share.curl.curl method)": [[939, "pypath.share.curl.Curl.is_quoted"]], "open() (pypath.share.curl.curl method)": [[939, "pypath.share.curl.Curl.open"]], "open_tgz() (pypath.share.curl.curl method)": [[939, "pypath.share.curl.Curl.open_tgz"]], "replace_forbidden() (pypath.share.curl.curl class method)": [[939, "pypath.share.curl.Curl.replace_forbidden"]], "set_binary_data() (pypath.share.curl.curl method)": [[939, "pypath.share.curl.Curl.set_binary_data"]], "url_fix() (pypath.share.curl.curl method)": [[939, "pypath.share.curl.Curl.url_fix"]], "fileopener (class in pypath.share.curl)": [[940, "pypath.share.curl.FileOpener"]], "__init__() (pypath.share.curl.fileopener method)": [[940, "pypath.share.curl.FileOpener.__init__"]], "extract() (pypath.share.curl.fileopener method)": [[940, "pypath.share.curl.FileOpener.extract"]], "open() (pypath.share.curl.fileopener method)": [[940, "pypath.share.curl.FileOpener.open"]], "open_tgz() (pypath.share.curl.fileopener method)": [[940, "pypath.share.curl.FileOpener.open_tgz"]], "remotefile (class in pypath.share.curl)": [[941, "pypath.share.curl.RemoteFile"]], "__init__() (pypath.share.curl.remotefile method)": [[941, "pypath.share.curl.RemoteFile.__init__"]], "__init__() (pypath.share.curl.cache_delete_off method)": [[942, "pypath.share.curl.cache_delete_off.__init__"]], "cache_delete_off (class in pypath.share.curl)": [[942, "pypath.share.curl.cache_delete_off"]], "__init__() (pypath.share.curl.cache_delete_on method)": [[943, "pypath.share.curl.cache_delete_on.__init__"]], "cache_delete_on (class in pypath.share.curl)": [[943, "pypath.share.curl.cache_delete_on"]], "__init__() (pypath.share.curl.cache_off method)": [[944, "pypath.share.curl.cache_off.__init__"]], "cache_off (class in pypath.share.curl)": [[944, "pypath.share.curl.cache_off"]], "__init__() (pypath.share.curl.cache_on method)": [[945, "pypath.share.curl.cache_on.__init__"]], "cache_on (class in pypath.share.curl)": [[945, "pypath.share.curl.cache_on"]], "__init__() (pypath.share.curl.cache_print_off method)": [[946, "pypath.share.curl.cache_print_off.__init__"]], "cache_print_off (class in pypath.share.curl)": [[946, "pypath.share.curl.cache_print_off"]], "__init__() (pypath.share.curl.cache_print_on method)": [[947, "pypath.share.curl.cache_print_on.__init__"]], "cache_print_on (class in pypath.share.curl)": [[947, "pypath.share.curl.cache_print_on"]], "__init__() (pypath.share.curl.debug_off method)": [[948, "pypath.share.curl.debug_off.__init__"]], "debug_off (class in pypath.share.curl)": [[948, "pypath.share.curl.debug_off"]], "__init__() (pypath.share.curl.debug_on method)": [[949, "pypath.share.curl.debug_on.__init__"]], "debug_on (class in pypath.share.curl)": [[949, "pypath.share.curl.debug_on"]], "__init__() (pypath.share.curl.dryrun_off method)": [[950, "pypath.share.curl.dryrun_off.__init__"]], "dryrun_off (class in pypath.share.curl)": [[950, "pypath.share.curl.dryrun_off"]], "__init__() (pypath.share.curl.dryrun_on method)": [[951, "pypath.share.curl.dryrun_on.__init__"]], "dryrun_on (class in pypath.share.curl)": [[951, "pypath.share.curl.dryrun_on"]], "is_url() (in module pypath.share.curl)": [[952, "pypath.share.curl.is_url"]], "__init__() (pypath.share.curl.preserve_off method)": [[953, "pypath.share.curl.preserve_off.__init__"]], "preserve_off (class in pypath.share.curl)": [[953, "pypath.share.curl.preserve_off"]], "__init__() (pypath.share.curl.preserve_on method)": [[954, "pypath.share.curl.preserve_on.__init__"]], "preserve_on (class in pypath.share.curl)": [[954, "pypath.share.curl.preserve_on"]], "pypath.share.progress": [[955, "module-pypath.share.progress"]], "progress (class in pypath.share.progress)": [[956, "pypath.share.progress.Progress"]], "__init__() (pypath.share.progress.progress method)": [[956, "pypath.share.progress.Progress.__init__"]], "get_desc() (pypath.share.progress.progress method)": [[956, "pypath.share.progress.Progress.get_desc"]], "init_tqdm() (pypath.share.progress.progress method)": [[956, "pypath.share.progress.Progress.init_tqdm"]], "set_done() (pypath.share.progress.progress method)": [[956, "pypath.share.progress.Progress.set_done"]], "set_status() (pypath.share.progress.progress method)": [[956, "pypath.share.progress.Progress.set_status"]], "set_total() (pypath.share.progress.progress method)": [[956, "pypath.share.progress.Progress.set_total"]], "step() (pypath.share.progress.progress method)": [[956, "pypath.share.progress.Progress.step"]], "terminate() (pypath.share.progress.progress method)": [[956, "pypath.share.progress.Progress.terminate"]], "pypath.share.session": [[957, "module-pypath.share.session"]], "pypath.share.settings": [[958, "module-pypath.share.settings"]], "pypath.utils": [[959, "module-pypath.utils"]], "pypath.utils.go": [[960, "module-pypath.utils.go"]], "goannotation (class in pypath.utils.go)": [[961, "pypath.utils.go.GOAnnotation"]], "__init__() (pypath.utils.go.goannotation method)": [[961, "pypath.utils.go.GOAnnotation.__init__"]], "all_uniprots() (pypath.utils.go.goannotation method)": [[961, "pypath.utils.go.GOAnnotation.all_uniprots"]], "expr_names_to_terms() (pypath.utils.go.goannotation method)": [[961, "pypath.utils.go.GOAnnotation.expr_names_to_terms"]], "get_annot() (pypath.utils.go.goannotation method)": [[961, "pypath.utils.go.GOAnnotation.get_annot"]], "get_annot_ancestors() (pypath.utils.go.goannotation method)": [[961, "pypath.utils.go.GOAnnotation.get_annot_ancestors"]], "get_annots() (pypath.utils.go.goannotation method)": [[961, "pypath.utils.go.GOAnnotation.get_annots"]], "get_annots_ancestors() (pypath.utils.go.goannotation method)": [[961, "pypath.utils.go.GOAnnotation.get_annots_ancestors"]], "get_name() (pypath.utils.go.goannotation method)": [[961, "pypath.utils.go.GOAnnotation.get_name"]], "get_term() (pypath.utils.go.goannotation method)": [[961, "pypath.utils.go.GOAnnotation.get_term"]], "has_any_term() (pypath.utils.go.goannotation method)": [[961, "pypath.utils.go.GOAnnotation.has_any_term"]], "has_term() (pypath.utils.go.goannotation method)": [[961, "pypath.utils.go.GOAnnotation.has_term"]], "i_select_by_term() (pypath.utils.go.goannotation method)": [[961, "pypath.utils.go.GOAnnotation.i_select_by_term"]], "reload() (pypath.utils.go.goannotation method)": [[961, "pypath.utils.go.GOAnnotation.reload"]], "select() (pypath.utils.go.goannotation method)": [[961, "pypath.utils.go.GOAnnotation.select"]], "select_by_all() (pypath.utils.go.goannotation method)": [[961, "pypath.utils.go.GOAnnotation.select_by_all"]], "select_by_expr() (pypath.utils.go.goannotation method)": [[961, "pypath.utils.go.GOAnnotation.select_by_expr"]], "select_by_expr_terms() (pypath.utils.go.goannotation method)": [[961, "pypath.utils.go.GOAnnotation.select_by_expr_terms"]], "select_by_name() (pypath.utils.go.goannotation method)": [[961, "pypath.utils.go.GOAnnotation.select_by_name"]], "select_by_term() (pypath.utils.go.goannotation method)": [[961, "pypath.utils.go.GOAnnotation.select_by_term"]], "gocustomannotation (class in pypath.utils.go)": [[962, "pypath.utils.go.GOCustomAnnotation"]], "__init__() (pypath.utils.go.gocustomannotation method)": [[962, "pypath.utils.go.GOCustomAnnotation.__init__"]], "get_annotation() (pypath.utils.go.gocustomannotation method)": [[962, "pypath.utils.go.GOCustomAnnotation.get_annotation"]], "get_annotations() (pypath.utils.go.gocustomannotation method)": [[962, "pypath.utils.go.GOCustomAnnotation.get_annotations"]], "process_categories() (pypath.utils.go.gocustomannotation method)": [[962, "pypath.utils.go.GOCustomAnnotation.process_categories"]], "reload() (pypath.utils.go.gocustomannotation method)": [[962, "pypath.utils.go.GOCustomAnnotation.reload"]], "geneontology (class in pypath.utils.go)": [[963, "pypath.utils.go.GeneOntology"]], "__init__() (pypath.utils.go.geneontology method)": [[963, "pypath.utils.go.GeneOntology.__init__"]], "all_from_aspect() (pypath.utils.go.geneontology method)": [[963, "pypath.utils.go.GeneOntology.all_from_aspect"]], "aspect_from_name() (pypath.utils.go.geneontology method)": [[963, "pypath.utils.go.GeneOntology.aspect_from_name"]], "flatten() (pypath.utils.go.geneontology method)": [[963, "pypath.utils.go.GeneOntology.flatten"]], "get_all_ancestors() (pypath.utils.go.geneontology method)": [[963, "pypath.utils.go.GeneOntology.get_all_ancestors"]], "get_all_descendants() (pypath.utils.go.geneontology method)": [[963, "pypath.utils.go.GeneOntology.get_all_descendants"]], "get_aspect() (pypath.utils.go.geneontology method)": [[963, "pypath.utils.go.GeneOntology.get_aspect"]], "get_name() (pypath.utils.go.geneontology method)": [[963, "pypath.utils.go.GeneOntology.get_name"]], "get_term() (pypath.utils.go.geneontology method)": [[963, "pypath.utils.go.GeneOntology.get_term"]], "highest() (pypath.utils.go.geneontology method)": [[963, "pypath.utils.go.GeneOntology.highest"]], "is_leaf() (pypath.utils.go.geneontology method)": [[963, "pypath.utils.go.GeneOntology.is_leaf"]], "is_name() (pypath.utils.go.geneontology method)": [[963, "pypath.utils.go.GeneOntology.is_name"]], "is_root() (pypath.utils.go.geneontology method)": [[963, "pypath.utils.go.GeneOntology.is_root"]], "is_term() (pypath.utils.go.geneontology method)": [[963, "pypath.utils.go.GeneOntology.is_term"]], "lowest() (pypath.utils.go.geneontology method)": [[963, "pypath.utils.go.GeneOntology.lowest"]], "names_to_terms() (pypath.utils.go.geneontology method)": [[963, "pypath.utils.go.GeneOntology.names_to_terms"]], "names_to_terms_aspects() (pypath.utils.go.geneontology method)": [[963, "pypath.utils.go.GeneOntology.names_to_terms_aspects"]], "reload() (pypath.utils.go.geneontology method)": [[963, "pypath.utils.go.GeneOntology.reload"]], "set_of() (pypath.utils.go.geneontology method)": [[963, "pypath.utils.go.GeneOntology.set_of"]], "set_of_names() (pypath.utils.go.geneontology method)": [[963, "pypath.utils.go.GeneOntology.set_of_names"]], "set_of_terms() (pypath.utils.go.geneontology method)": [[963, "pypath.utils.go.GeneOntology.set_of_terms"]], "subgraph_nodes() (pypath.utils.go.geneontology method)": [[963, "pypath.utils.go.GeneOntology.subgraph_nodes"]], "terms_to_names() (pypath.utils.go.geneontology method)": [[963, "pypath.utils.go.GeneOntology.terms_to_names"]], "terms_to_names_aspects() (pypath.utils.go.geneontology method)": [[963, "pypath.utils.go.GeneOntology.terms_to_names_aspects"]], "annotate() (in module pypath.utils.go)": [[964, "pypath.utils.go.annotate"]], "get_db() (in module pypath.utils.go)": [[965, "pypath.utils.go.get_db"]], "init_db() (in module pypath.utils.go)": [[966, "pypath.utils.go.init_db"]], "load_go() (in module pypath.utils.go)": [[967, "pypath.utils.go.load_go"]], "pypath.utils.mapping": [[968, "module-pypath.utils.mapping"]], "mapreader (class in pypath.utils.mapping)": [[969, "pypath.utils.mapping.MapReader"]], "__init__() (pypath.utils.mapping.mapreader method)": [[969, "pypath.utils.mapping.MapReader.__init__"]], "id_type_side() (pypath.utils.mapping.mapreader method)": [[969, "pypath.utils.mapping.MapReader.id_type_side"]], "load() (pypath.utils.mapping.mapreader method)": [[969, "pypath.utils.mapping.MapReader.load"]], "mapping_table_a_to_b (pypath.utils.mapping.mapreader property)": [[969, "pypath.utils.mapping.MapReader.mapping_table_a_to_b"]], "mapping_table_b_to_a (pypath.utils.mapping.mapreader property)": [[969, "pypath.utils.mapping.MapReader.mapping_table_b_to_a"]], "read() (pypath.utils.mapping.mapreader method)": [[969, "pypath.utils.mapping.MapReader.read"]], "read_cache() (pypath.utils.mapping.mapreader method)": [[969, "pypath.utils.mapping.MapReader.read_cache"]], "read_mapping_array() (pypath.utils.mapping.mapreader method)": [[969, "pypath.utils.mapping.MapReader.read_mapping_array"]], "read_mapping_biomart() (pypath.utils.mapping.mapreader method)": [[969, "pypath.utils.mapping.MapReader.read_mapping_biomart"]], "read_mapping_file() (pypath.utils.mapping.mapreader method)": [[969, "pypath.utils.mapping.MapReader.read_mapping_file"]], "read_mapping_hmdb() (pypath.utils.mapping.mapreader method)": [[969, "pypath.utils.mapping.MapReader.read_mapping_hmdb"]], "read_mapping_ramp() (pypath.utils.mapping.mapreader method)": [[969, "pypath.utils.mapping.MapReader.read_mapping_ramp"]], "read_mapping_unichem() (pypath.utils.mapping.mapreader method)": [[969, "pypath.utils.mapping.MapReader.read_mapping_unichem"]], "read_mapping_uniprot() (pypath.utils.mapping.mapreader method)": [[969, "pypath.utils.mapping.MapReader.read_mapping_uniprot"]], "read_mapping_uniprot_list() (pypath.utils.mapping.mapreader method)": [[969, "pypath.utils.mapping.MapReader.read_mapping_uniprot_list"]], "resource_id_type() (pypath.utils.mapping.mapreader method)": [[969, "pypath.utils.mapping.MapReader.resource_id_type"]], "set_uniprot_space() (pypath.utils.mapping.mapreader method)": [[969, "pypath.utils.mapping.MapReader.set_uniprot_space"]], "setup_cache() (pypath.utils.mapping.mapreader method)": [[969, "pypath.utils.mapping.MapReader.setup_cache"]], "tables_loaded() (pypath.utils.mapping.mapreader method)": [[969, "pypath.utils.mapping.MapReader.tables_loaded"]], "write_cache() (pypath.utils.mapping.mapreader method)": [[969, "pypath.utils.mapping.MapReader.write_cache"]], "mapper (class in pypath.utils.mapping)": [[970, "pypath.utils.mapping.Mapper"]], "__init__() (pypath.utils.mapping.mapper method)": [[970, "pypath.utils.mapping.Mapper.__init__"]], "chain_map() (pypath.utils.mapping.mapper method)": [[970, "pypath.utils.mapping.Mapper.chain_map"]], "create_reverse() (pypath.utils.mapping.mapper method)": [[970, "pypath.utils.mapping.Mapper.create_reverse"]], "get_table_key() (pypath.utils.mapping.mapper method)": [[970, "pypath.utils.mapping.Mapper.get_table_key"]], "guess_type() (pypath.utils.mapping.mapper method)": [[970, "pypath.utils.mapping.Mapper.guess_type"]], "has_mapping_table() (pypath.utils.mapping.mapper method)": [[970, "pypath.utils.mapping.Mapper.has_mapping_table"]], "id_types() (pypath.utils.mapping.mapper class method)": [[970, "pypath.utils.mapping.Mapper.id_types"]], "identifier() (pypath.utils.mapping.mapper method)": [[970, "pypath.utils.mapping.Mapper.identifier"]], "label() (pypath.utils.mapping.mapper method)": [[970, "pypath.utils.mapping.Mapper.label"]], "load_genesymbol5() (pypath.utils.mapping.mapper method)": [[970, "pypath.utils.mapping.Mapper.load_genesymbol5"]], "load_mapping() (pypath.utils.mapping.mapper method)": [[970, "pypath.utils.mapping.Mapper.load_mapping"]], "load_uniprot_static() (pypath.utils.mapping.mapper method)": [[970, "pypath.utils.mapping.Mapper.load_uniprot_static"]], "map_name() (pypath.utils.mapping.mapper method)": [[970, "pypath.utils.mapping.Mapper.map_name"]], "map_name0() (pypath.utils.mapping.mapper method)": [[970, "pypath.utils.mapping.Mapper.map_name0"]], "map_names() (pypath.utils.mapping.mapper method)": [[970, "pypath.utils.mapping.Mapper.map_names"]], "mapping_tables() (pypath.utils.mapping.mapper static method)": [[970, "pypath.utils.mapping.Mapper.mapping_tables"]], "only_uniprot_ac() (pypath.utils.mapping.mapper method)": [[970, "pypath.utils.mapping.Mapper.only_uniprot_ac"]], "other_organism_uniprot() (pypath.utils.mapping.mapper method)": [[970, "pypath.utils.mapping.Mapper.other_organism_uniprot"]], "primary_uniprot() (pypath.utils.mapping.mapper method)": [[970, "pypath.utils.mapping.Mapper.primary_uniprot"]], "reload() (pypath.utils.mapping.mapper method)": [[970, "pypath.utils.mapping.Mapper.reload"]], "remove_expired() (pypath.utils.mapping.mapper method)": [[970, "pypath.utils.mapping.Mapper.remove_expired"]], "remove_key() (pypath.utils.mapping.mapper method)": [[970, "pypath.utils.mapping.Mapper.remove_key"]], "remove_table() (pypath.utils.mapping.mapper method)": [[970, "pypath.utils.mapping.Mapper.remove_table"]], "reverse_key() (pypath.utils.mapping.mapper method)": [[970, "pypath.utils.mapping.Mapper.reverse_key"]], "reverse_mapping() (pypath.utils.mapping.mapper static method)": [[970, "pypath.utils.mapping.Mapper.reverse_mapping"]], "swissprots() (pypath.utils.mapping.mapper method)": [[970, "pypath.utils.mapping.Mapper.swissprots"]], "translate_deleted_uniprot_by_genesymbol() (pypath.utils.mapping.mapper method)": [[970, "pypath.utils.mapping.Mapper.translate_deleted_uniprot_by_genesymbol"]], "translation_df() (pypath.utils.mapping.mapper method)": [[970, "pypath.utils.mapping.Mapper.translation_df"]], "translation_dict() (pypath.utils.mapping.mapper method)": [[970, "pypath.utils.mapping.Mapper.translation_dict"]], "trembl_swissprot() (pypath.utils.mapping.mapper method)": [[970, "pypath.utils.mapping.Mapper.trembl_swissprot"]], "uniprot_cleanup() (pypath.utils.mapping.mapper method)": [[970, "pypath.utils.mapping.Mapper.uniprot_cleanup"]], "valid_uniprot() (pypath.utils.mapping.mapper method)": [[970, "pypath.utils.mapping.Mapper.valid_uniprot"]], "which_table() (pypath.utils.mapping.mapper method)": [[970, "pypath.utils.mapping.Mapper.which_table"]], "mappingtable (class in pypath.utils.mapping)": [[971, "pypath.utils.mapping.MappingTable"]], "__init__() (pypath.utils.mapping.mappingtable method)": [[971, "pypath.utils.mapping.MappingTable.__init__"]], "get_key() (pypath.utils.mapping.mappingtable method)": [[971, "pypath.utils.mapping.MappingTable.get_key"]], "mappingtablekey (class in pypath.utils.mapping)": [[972, "pypath.utils.mapping.MappingTableKey"]], "__init__() (pypath.utils.mapping.mappingtablekey method)": [[972, "pypath.utils.mapping.MappingTableKey.__init__"]], "count() (pypath.utils.mapping.mappingtablekey method)": [[972, "pypath.utils.mapping.MappingTableKey.count"]], "id_type (pypath.utils.mapping.mappingtablekey attribute)": [[972, "pypath.utils.mapping.MappingTableKey.id_type"]], "index() (pypath.utils.mapping.mappingtablekey method)": [[972, "pypath.utils.mapping.MappingTableKey.index"]], "ncbi_tax_id (pypath.utils.mapping.mappingtablekey attribute)": [[972, "pypath.utils.mapping.MappingTableKey.ncbi_tax_id"]], "target_id_type (pypath.utils.mapping.mappingtablekey attribute)": [[972, "pypath.utils.mapping.MappingTableKey.target_id_type"]], "uniprot_id_types (in module pypath.utils.mapping)": [[973, "pypath.utils.mapping.UNIPROT_ID_TYPES"]], "get_mapper() (in module pypath.utils.mapping)": [[974, "pypath.utils.mapping.get_mapper"]], "guess_type() (in module pypath.utils.mapping)": [[975, "pypath.utils.mapping.guess_type"]], "id_from_label() (in module pypath.utils.mapping)": [[976, "pypath.utils.mapping.id_from_label"]], "id_from_label0() (in module pypath.utils.mapping)": [[977, "pypath.utils.mapping.id_from_label0"]], "id_types() (in module pypath.utils.mapping)": [[978, "pypath.utils.mapping.id_types"]], "init() (in module pypath.utils.mapping)": [[979, "pypath.utils.mapping.init"]], "label() (in module pypath.utils.mapping)": [[980, "pypath.utils.mapping.label"]], "map_name() (in module pypath.utils.mapping)": [[981, "pypath.utils.mapping.map_name"]], "map_name0() (in module pypath.utils.mapping)": [[982, "pypath.utils.mapping.map_name0"]], "map_names() (in module pypath.utils.mapping)": [[983, "pypath.utils.mapping.map_names"]], "mapping_tables() (in module pypath.utils.mapping)": [[984, "pypath.utils.mapping.mapping_tables"]], "translation_df() (in module pypath.utils.mapping)": [[985, "pypath.utils.mapping.translation_df"]], "translation_dict() (in module pypath.utils.mapping)": [[986, "pypath.utils.mapping.translation_dict"]], "pypath.utils.metabo": [[987, "module-pypath.utils.metabo"]], "pypath.utils.orthology": [[988, "module-pypath.utils.orthology"]], "ensemblortholog (class in pypath.utils.orthology)": [[989, "pypath.utils.orthology.EnsemblOrtholog"]], "__init__() (pypath.utils.orthology.ensemblortholog method)": [[989, "pypath.utils.orthology.EnsemblOrtholog.__init__"]], "count() (pypath.utils.orthology.ensemblortholog method)": [[989, "pypath.utils.orthology.EnsemblOrtholog.count"]], "hc (pypath.utils.orthology.ensemblortholog attribute)": [[989, "pypath.utils.orthology.EnsemblOrtholog.hc"]], "id (pypath.utils.orthology.ensemblortholog attribute)": [[989, "pypath.utils.orthology.EnsemblOrtholog.id"]], "index() (pypath.utils.orthology.ensemblortholog method)": [[989, "pypath.utils.orthology.EnsemblOrtholog.index"]], "types (pypath.utils.orthology.ensemblortholog attribute)": [[989, "pypath.utils.orthology.EnsemblOrtholog.types"]], "ensemblorthology (class in pypath.utils.orthology)": [[990, "pypath.utils.orthology.EnsemblOrthology"]], "__init__() (pypath.utils.orthology.ensemblorthology method)": [[990, "pypath.utils.orthology.EnsemblOrthology.__init__"]], "asdict() (pypath.utils.orthology.ensemblorthology method)": [[990, "pypath.utils.orthology.EnsemblOrthology.asdict"]], "df() (pypath.utils.orthology.ensemblorthology method)": [[990, "pypath.utils.orthology.EnsemblOrthology.df"]], "match() (pypath.utils.orthology.ensemblorthology method)": [[990, "pypath.utils.orthology.EnsemblOrthology.match"]], "translate() (pypath.utils.orthology.ensemblorthology method)": [[990, "pypath.utils.orthology.EnsemblOrthology.translate"]], "translate_df() (pypath.utils.orthology.ensemblorthology method)": [[990, "pypath.utils.orthology.EnsemblOrthology.translate_df"]], "homologeneortholog (class in pypath.utils.orthology)": [[991, "pypath.utils.orthology.HomologeneOrtholog"]], "__init__() (pypath.utils.orthology.homologeneortholog method)": [[991, "pypath.utils.orthology.HomologeneOrtholog.__init__"]], "count() (pypath.utils.orthology.homologeneortholog method)": [[991, "pypath.utils.orthology.HomologeneOrtholog.count"]], "id (pypath.utils.orthology.homologeneortholog attribute)": [[991, "pypath.utils.orthology.HomologeneOrtholog.id"]], "index() (pypath.utils.orthology.homologeneortholog method)": [[991, "pypath.utils.orthology.HomologeneOrtholog.index"]], "homologeneorthology (class in pypath.utils.orthology)": [[992, "pypath.utils.orthology.HomologeneOrthology"]], "__init__() (pypath.utils.orthology.homologeneorthology method)": [[992, "pypath.utils.orthology.HomologeneOrthology.__init__"]], "asdict() (pypath.utils.orthology.homologeneorthology method)": [[992, "pypath.utils.orthology.HomologeneOrthology.asdict"]], "df() (pypath.utils.orthology.homologeneorthology method)": [[992, "pypath.utils.orthology.HomologeneOrthology.df"]], "load() (pypath.utils.orthology.homologeneorthology method)": [[992, "pypath.utils.orthology.HomologeneOrthology.load"]], "translate() (pypath.utils.orthology.homologeneorthology method)": [[992, "pypath.utils.orthology.HomologeneOrthology.translate"]], "translate_df() (pypath.utils.orthology.homologeneorthology method)": [[992, "pypath.utils.orthology.HomologeneOrthology.translate_df"]], "omaortholog (class in pypath.utils.orthology)": [[993, "pypath.utils.orthology.OmaOrtholog"]], "__init__() (pypath.utils.orthology.omaortholog method)": [[993, "pypath.utils.orthology.OmaOrtholog.__init__"]], "count() (pypath.utils.orthology.omaortholog method)": [[993, "pypath.utils.orthology.OmaOrtholog.count"]], "id (pypath.utils.orthology.omaortholog attribute)": [[993, "pypath.utils.orthology.OmaOrtholog.id"]], "index() (pypath.utils.orthology.omaortholog method)": [[993, "pypath.utils.orthology.OmaOrtholog.index"]], "rel_type (pypath.utils.orthology.omaortholog attribute)": [[993, "pypath.utils.orthology.OmaOrtholog.rel_type"]], "score (pypath.utils.orthology.omaortholog attribute)": [[993, "pypath.utils.orthology.OmaOrtholog.score"]], "omaorthology (class in pypath.utils.orthology)": [[994, "pypath.utils.orthology.OmaOrthology"]], "__init__() (pypath.utils.orthology.omaorthology method)": [[994, "pypath.utils.orthology.OmaOrthology.__init__"]], "asdict() (pypath.utils.orthology.omaorthology method)": [[994, "pypath.utils.orthology.OmaOrthology.asdict"]], "df() (pypath.utils.orthology.omaorthology method)": [[994, "pypath.utils.orthology.OmaOrthology.df"]], "match() (pypath.utils.orthology.omaorthology method)": [[994, "pypath.utils.orthology.OmaOrthology.match"]], "translate() (pypath.utils.orthology.omaorthology method)": [[994, "pypath.utils.orthology.OmaOrthology.translate"]], "translate_df() (pypath.utils.orthology.omaorthology method)": [[994, "pypath.utils.orthology.OmaOrthology.translate_df"]], "orthologbase (class in pypath.utils.orthology)": [[995, "pypath.utils.orthology.OrthologBase"]], "__init__() (pypath.utils.orthology.orthologbase method)": [[995, "pypath.utils.orthology.OrthologBase.__init__"]], "orthologmeta (class in pypath.utils.orthology)": [[996, "pypath.utils.orthology.OrthologMeta"]], "__init__() (pypath.utils.orthology.orthologmeta method)": [[996, "pypath.utils.orthology.OrthologMeta.__init__"]], "mro() (pypath.utils.orthology.orthologmeta method)": [[996, "pypath.utils.orthology.OrthologMeta.mro"]], "register() (pypath.utils.orthology.orthologmeta method)": [[996, "pypath.utils.orthology.OrthologMeta.register"]], "orthologymanager (class in pypath.utils.orthology)": [[997, "pypath.utils.orthology.OrthologyManager"]], "__init__() (pypath.utils.orthology.orthologymanager method)": [[997, "pypath.utils.orthology.OrthologyManager.__init__"]], "get_df() (pypath.utils.orthology.orthologymanager method)": [[997, "pypath.utils.orthology.OrthologyManager.get_df"]], "get_dict() (pypath.utils.orthology.orthologymanager method)": [[997, "pypath.utils.orthology.OrthologyManager.get_dict"]], "translate() (pypath.utils.orthology.orthologymanager method)": [[997, "pypath.utils.orthology.OrthologyManager.translate"]], "translate_df() (pypath.utils.orthology.orthologymanager method)": [[997, "pypath.utils.orthology.OrthologyManager.translate_df"]], "orthologytablekey (class in pypath.utils.orthology)": [[998, "pypath.utils.orthology.OrthologyTableKey"]], "__init__() (pypath.utils.orthology.orthologytablekey method)": [[998, "pypath.utils.orthology.OrthologyTableKey.__init__"]], "count() (pypath.utils.orthology.orthologytablekey method)": [[998, "pypath.utils.orthology.OrthologyTableKey.count"]], "id_type (pypath.utils.orthology.orthologytablekey attribute)": [[998, "pypath.utils.orthology.OrthologyTableKey.id_type"]], "index() (pypath.utils.orthology.orthologytablekey method)": [[998, "pypath.utils.orthology.OrthologyTableKey.index"]], "only_swissprot (pypath.utils.orthology.orthologytablekey attribute)": [[998, "pypath.utils.orthology.OrthologyTableKey.only_swissprot"]], "resource (pypath.utils.orthology.orthologytablekey attribute)": [[998, "pypath.utils.orthology.OrthologyTableKey.resource"]], "source (pypath.utils.orthology.orthologytablekey attribute)": [[998, "pypath.utils.orthology.OrthologyTableKey.source"]], "target (pypath.utils.orthology.orthologytablekey attribute)": [[998, "pypath.utils.orthology.OrthologyTableKey.target"]], "proteinorthology (class in pypath.utils.orthology)": [[999, "pypath.utils.orthology.ProteinOrthology"]], "__init__() (pypath.utils.orthology.proteinorthology method)": [[999, "pypath.utils.orthology.ProteinOrthology.__init__"]], "asdict() (pypath.utils.orthology.proteinorthology method)": [[999, "pypath.utils.orthology.ProteinOrthology.asdict"]], "df() (pypath.utils.orthology.proteinorthology method)": [[999, "pypath.utils.orthology.ProteinOrthology.df"]], "translate() (pypath.utils.orthology.proteinorthology method)": [[999, "pypath.utils.orthology.ProteinOrthology.translate"]], "translate_df() (pypath.utils.orthology.proteinorthology method)": [[999, "pypath.utils.orthology.ProteinOrthology.translate_df"]], "proteomes (class in pypath.utils.orthology)": [[1000, "pypath.utils.orthology.Proteomes"]], "__init__() (pypath.utils.orthology.proteomes method)": [[1000, "pypath.utils.orthology.Proteomes.__init__"]], "ptmorthology (class in pypath.utils.orthology)": [[1001, "pypath.utils.orthology.PtmOrthology"]], "__init__() (pypath.utils.orthology.ptmorthology method)": [[1001, "pypath.utils.orthology.PtmOrthology.__init__"]], "ptm_orthology() (pypath.utils.orthology.ptmorthology method)": [[1001, "pypath.utils.orthology.PtmOrthology.ptm_orthology"]], "translate() (pypath.utils.orthology.ptmorthology method)": [[1001, "pypath.utils.orthology.PtmOrthology.translate"]], "translate_site() (pypath.utils.orthology.ptmorthology method)": [[1001, "pypath.utils.orthology.PtmOrthology.translate_site"]], "sequencecontainer (class in pypath.utils.orthology)": [[1002, "pypath.utils.orthology.SequenceContainer"]], "__init__() (pypath.utils.orthology.sequencecontainer method)": [[1002, "pypath.utils.orthology.SequenceContainer.__init__"]], "get_df() (in module pypath.utils.orthology)": [[1003, "pypath.utils.orthology.get_df"]], "get_dict() (in module pypath.utils.orthology)": [[1004, "pypath.utils.orthology.get_dict"]], "get_manager() (in module pypath.utils.orthology)": [[1005, "pypath.utils.orthology.get_manager"]], "init() (in module pypath.utils.orthology)": [[1006, "pypath.utils.orthology.init"]], "translate() (in module pypath.utils.orthology)": [[1007, "pypath.utils.orthology.translate"]], "translate_df() (in module pypath.utils.orthology)": [[1008, "pypath.utils.orthology.translate_df"]], "pypath.utils.pdb": [[1009, "module-pypath.utils.pdb"]], "residue (class in pypath.utils.pdb)": [[1010, "pypath.utils.pdb.Residue"]], "__init__() (pypath.utils.pdb.residue method)": [[1010, "pypath.utils.pdb.Residue.__init__"]], "chain (pypath.utils.pdb.residue attribute)": [[1010, "pypath.utils.pdb.Residue.chain"]], "count() (pypath.utils.pdb.residue method)": [[1010, "pypath.utils.pdb.Residue.count"]], "index() (pypath.utils.pdb.residue method)": [[1010, "pypath.utils.pdb.Residue.index"]], "offset (pypath.utils.pdb.residue attribute)": [[1010, "pypath.utils.pdb.Residue.offset"]], "resnum (pypath.utils.pdb.residue attribute)": [[1010, "pypath.utils.pdb.Residue.resnum"]], "uniprot (pypath.utils.pdb.residue attribute)": [[1010, "pypath.utils.pdb.Residue.uniprot"]], "residuemapper (class in pypath.utils.pdb)": [[1011, "pypath.utils.pdb.ResidueMapper"]], "__init__() (pypath.utils.pdb.residuemapper method)": [[1011, "pypath.utils.pdb.ResidueMapper.__init__"]], "clean() (pypath.utils.pdb.residuemapper method)": [[1011, "pypath.utils.pdb.ResidueMapper.clean"]], "get_residue() (pypath.utils.pdb.residuemapper method)": [[1011, "pypath.utils.pdb.ResidueMapper.get_residue"]], "load_mapping() (pypath.utils.pdb.residuemapper method)": [[1011, "pypath.utils.pdb.ResidueMapper.load_mapping"]], "segment (class in pypath.utils.pdb)": [[1012, "pypath.utils.pdb.Segment"]], "__init__() (pypath.utils.pdb.segment method)": [[1012, "pypath.utils.pdb.Segment.__init__"]], "count() (pypath.utils.pdb.segment method)": [[1012, "pypath.utils.pdb.Segment.count"]], "index() (pypath.utils.pdb.segment method)": [[1012, "pypath.utils.pdb.Segment.index"]], "pdb_end (pypath.utils.pdb.segment attribute)": [[1012, "pypath.utils.pdb.Segment.pdb_end"]], "pdb_start (pypath.utils.pdb.segment attribute)": [[1012, "pypath.utils.pdb.Segment.pdb_start"]], "uniprot (pypath.utils.pdb.segment attribute)": [[1012, "pypath.utils.pdb.Segment.uniprot"]], "uniprot_end (pypath.utils.pdb.segment attribute)": [[1012, "pypath.utils.pdb.Segment.uniprot_end"]], "uniprot_start (pypath.utils.pdb.segment attribute)": [[1012, "pypath.utils.pdb.Segment.uniprot_start"]], "residue_pdb() (in module pypath.utils.pdb)": [[1013, "pypath.utils.pdb.residue_pdb"]], "pypath.utils.proteomicsdb": [[1014, "module-pypath.utils.proteomicsdb"]], "proteomicsdb (class in pypath.utils.proteomicsdb)": [[1015, "pypath.utils.proteomicsdb.ProteomicsDB"]], "__init__() (pypath.utils.proteomicsdb.proteomicsdb method)": [[1015, "pypath.utils.proteomicsdb.ProteomicsDB.__init__"]], "get_expression() (pypath.utils.proteomicsdb.proteomicsdb method)": [[1015, "pypath.utils.proteomicsdb.ProteomicsDB.get_expression"]], "get_pieces() (pypath.utils.proteomicsdb.proteomicsdb method)": [[1015, "pypath.utils.proteomicsdb.ProteomicsDB.get_pieces"]], "get_proteins() (pypath.utils.proteomicsdb.proteomicsdb method)": [[1015, "pypath.utils.proteomicsdb.ProteomicsDB.get_proteins"]], "get_tissues() (pypath.utils.proteomicsdb.proteomicsdb method)": [[1015, "pypath.utils.proteomicsdb.ProteomicsDB.get_tissues"]], "pandas_matrix() (pypath.utils.proteomicsdb.proteomicsdb method)": [[1015, "pypath.utils.proteomicsdb.ProteomicsDB.pandas_matrix"]], "query() (pypath.utils.proteomicsdb.proteomicsdb method)": [[1015, "pypath.utils.proteomicsdb.ProteomicsDB.query"]], "tissues_x_proteins() (pypath.utils.proteomicsdb.proteomicsdb method)": [[1015, "pypath.utils.proteomicsdb.ProteomicsDB.tissues_x_proteins"]], "pypath.utils.pyreact": [[1016, "module-pypath.utils.pyreact"]], "attributehandler (class in pypath.utils.pyreact)": [[1017, "pypath.utils.pyreact.AttributeHandler"]], "__init__() (pypath.utils.pyreact.attributehandler method)": [[1017, "pypath.utils.pyreact.AttributeHandler.__init__"]], "biopaxreader (class in pypath.utils.pyreact)": [[1018, "pypath.utils.pyreact.BioPaxReader"]], "__init__() (pypath.utils.pyreact.biopaxreader method)": [[1018, "pypath.utils.pyreact.BioPaxReader.__init__"]], "biopax_size() (pypath.utils.pyreact.biopaxreader method)": [[1018, "pypath.utils.pyreact.BioPaxReader.biopax_size"]], "cleanup_hook() (pypath.utils.pyreact.biopaxreader method)": [[1018, "pypath.utils.pyreact.BioPaxReader.cleanup_hook"]], "close_biopax() (pypath.utils.pyreact.biopaxreader method)": [[1018, "pypath.utils.pyreact.BioPaxReader.close_biopax"]], "extract() (pypath.utils.pyreact.biopaxreader method)": [[1018, "pypath.utils.pyreact.BioPaxReader.extract"]], "init_etree() (pypath.utils.pyreact.biopaxreader method)": [[1018, "pypath.utils.pyreact.BioPaxReader.init_etree"]], "iterate() (pypath.utils.pyreact.biopaxreader method)": [[1018, "pypath.utils.pyreact.BioPaxReader.iterate"]], "open_biopax() (pypath.utils.pyreact.biopaxreader method)": [[1018, "pypath.utils.pyreact.BioPaxReader.open_biopax"]], "process() (pypath.utils.pyreact.biopaxreader method)": [[1018, "pypath.utils.pyreact.BioPaxReader.process"]], "set_progress() (pypath.utils.pyreact.biopaxreader method)": [[1018, "pypath.utils.pyreact.BioPaxReader.set_progress"]], "complex (class in pypath.utils.pyreact)": [[1019, "pypath.utils.pyreact.Complex"]], "__init__() (pypath.utils.pyreact.complex method)": [[1019, "pypath.utils.pyreact.Complex.__init__"]], "complexvariations (class in pypath.utils.pyreact)": [[1020, "pypath.utils.pyreact.ComplexVariations"]], "__init__() (pypath.utils.pyreact.complexvariations method)": [[1020, "pypath.utils.pyreact.ComplexVariations.__init__"]], "itermembers() (pypath.utils.pyreact.complexvariations method)": [[1020, "pypath.utils.pyreact.ComplexVariations.itermembers"]], "control (class in pypath.utils.pyreact)": [[1021, "pypath.utils.pyreact.Control"]], "__init__() (pypath.utils.pyreact.control method)": [[1021, "pypath.utils.pyreact.Control.__init__"]], "entity (class in pypath.utils.pyreact)": [[1022, "pypath.utils.pyreact.Entity"]], "__init__() (pypath.utils.pyreact.entity method)": [[1022, "pypath.utils.pyreact.Entity.__init__"]], "expand() (pypath.utils.pyreact.entity method)": [[1022, "pypath.utils.pyreact.Entity.expand"]], "entityset (class in pypath.utils.pyreact)": [[1023, "pypath.utils.pyreact.EntitySet"]], "__init__() (pypath.utils.pyreact.entityset method)": [[1023, "pypath.utils.pyreact.EntitySet.__init__"]], "intersecting (class in pypath.utils.pyreact)": [[1024, "pypath.utils.pyreact.Intersecting"]], "__init__() (pypath.utils.pyreact.intersecting method)": [[1024, "pypath.utils.pyreact.Intersecting.__init__"]], "protein (class in pypath.utils.pyreact)": [[1025, "pypath.utils.pyreact.Protein"]], "__init__() (pypath.utils.pyreact.protein method)": [[1025, "pypath.utils.pyreact.Protein.__init__"]], "expand() (pypath.utils.pyreact.protein method)": [[1025, "pypath.utils.pyreact.Protein.expand"]], "proteinfamily (class in pypath.utils.pyreact)": [[1026, "pypath.utils.pyreact.ProteinFamily"]], "__init__() (pypath.utils.pyreact.proteinfamily method)": [[1026, "pypath.utils.pyreact.ProteinFamily.__init__"]], "pyreact (class in pypath.utils.pyreact)": [[1027, "pypath.utils.pyreact.PyReact"]], "__init__() (pypath.utils.pyreact.pyreact method)": [[1027, "pypath.utils.pyreact.PyReact.__init__"]], "gen_cvariations() (pypath.utils.pyreact.pyreact method)": [[1027, "pypath.utils.pyreact.PyReact.gen_cvariations"]], "in_same_component() (pypath.utils.pyreact.pyreact method)": [[1027, "pypath.utils.pyreact.PyReact.in_same_component"]], "merge_complexes() (pypath.utils.pyreact.pyreact method)": [[1027, "pypath.utils.pyreact.PyReact.merge_complexes"]], "merge_cvariations() (pypath.utils.pyreact.pyreact method)": [[1027, "pypath.utils.pyreact.PyReact.merge_cvariations"]], "reaction (class in pypath.utils.pyreact)": [[1028, "pypath.utils.pyreact.Reaction"]], "__init__() (pypath.utils.pyreact.reaction method)": [[1028, "pypath.utils.pyreact.Reaction.__init__"]], "reactionside (class in pypath.utils.pyreact)": [[1029, "pypath.utils.pyreact.ReactionSide"]], "__init__() (pypath.utils.pyreact.reactionside method)": [[1029, "pypath.utils.pyreact.ReactionSide.__init__"]], "expand() (pypath.utils.pyreact.reactionside method)": [[1029, "pypath.utils.pyreact.ReactionSide.expand"]], "reference (class in pypath.utils.pyreact)": [[1030, "pypath.utils.pyreact.Reference"]], "__init__() (pypath.utils.pyreact.reference method)": [[1030, "pypath.utils.pyreact.Reference.__init__"]], "expand() (pypath.utils.pyreact.reference method)": [[1030, "pypath.utils.pyreact.Reference.expand"]], "pypath.utils.reflists": [[1031, "module-pypath.utils.reflists"]], "referencelistmanager (class in pypath.utils.reflists)": [[1032, "pypath.utils.reflists.ReferenceListManager"]], "__init__() (pypath.utils.reflists.referencelistmanager method)": [[1032, "pypath.utils.reflists.ReferenceListManager.__init__"]], "check() (pypath.utils.reflists.referencelistmanager method)": [[1032, "pypath.utils.reflists.ReferenceListManager.check"]], "is_not() (pypath.utils.reflists.referencelistmanager method)": [[1032, "pypath.utils.reflists.ReferenceListManager.is_not"]], "select() (pypath.utils.reflists.referencelistmanager method)": [[1032, "pypath.utils.reflists.ReferenceListManager.select"]], "check() (in module pypath.utils.reflists)": [[1033, "pypath.utils.reflists.check"]], "get_manager() (in module pypath.utils.reflists)": [[1034, "pypath.utils.reflists.get_manager"]], "get_reflist() (in module pypath.utils.reflists)": [[1035, "pypath.utils.reflists.get_reflist"]], "init() (in module pypath.utils.reflists)": [[1036, "pypath.utils.reflists.init"]], "is_not() (in module pypath.utils.reflists)": [[1037, "pypath.utils.reflists.is_not"]], "select() (in module pypath.utils.reflists)": [[1038, "pypath.utils.reflists.select"]], "pypath.utils.residues": [[1039, "module-pypath.utils.residues"]], "residuemapper (class in pypath.utils.residues)": [[1040, "pypath.utils.residues.ResidueMapper"]], "__init__() (pypath.utils.residues.residuemapper method)": [[1040, "pypath.utils.residues.ResidueMapper.__init__"]], "clean() (pypath.utils.residues.residuemapper method)": [[1040, "pypath.utils.residues.ResidueMapper.clean"]], "pypath.utils.seq": [[1041, "module-pypath.utils.seq"]], "pfam (class in pypath.utils.seq)": [[1042, "pypath.utils.seq.Pfam"]], "__init__() (pypath.utils.seq.pfam method)": [[1042, "pypath.utils.seq.Pfam.__init__"]], "iterdb() (pypath.utils.seq.pfam method)": [[1042, "pypath.utils.seq.Pfam.iterdb"]], "iterprotein() (pypath.utils.seq.pfam method)": [[1042, "pypath.utils.seq.Pfam.iterprotein"]], "load() (pypath.utils.seq.pfam method)": [[1042, "pypath.utils.seq.Pfam.load"]], "processor() (pypath.utils.seq.pfam method)": [[1042, "pypath.utils.seq.Pfam.processor"]], "unload() (pypath.utils.seq.pfam method)": [[1042, "pypath.utils.seq.Pfam.unload"]], "resource (class in pypath.utils.seq)": [[1043, "pypath.utils.seq.Resource"]], "__init__() (pypath.utils.seq.resource method)": [[1043, "pypath.utils.seq.Resource.__init__"]], "iterdb() (pypath.utils.seq.resource method)": [[1043, "pypath.utils.seq.Resource.iterdb"]], "iterprotein() (pypath.utils.seq.resource method)": [[1043, "pypath.utils.seq.Resource.iterprotein"]], "load() (pypath.utils.seq.resource method)": [[1043, "pypath.utils.seq.Resource.load"]], "processor() (pypath.utils.seq.resource method)": [[1043, "pypath.utils.seq.Resource.processor"]], "unload() (pypath.utils.seq.resource method)": [[1043, "pypath.utils.seq.Resource.unload"]], "seq (class in pypath.utils.seq)": [[1044, "pypath.utils.seq.Seq"]], "__init__() (pypath.utils.seq.seq method)": [[1044, "pypath.utils.seq.Seq.__init__"]], "findall() (pypath.utils.seq.seq method)": [[1044, "pypath.utils.seq.Seq.findall"]], "get_isoforms() (in module pypath.utils.seq)": [[1045, "pypath.utils.seq.get_isoforms"]], "read_fasta() (in module pypath.utils.seq)": [[1046, "pypath.utils.seq.read_fasta"]], "swissprot_seq() (in module pypath.utils.seq)": [[1047, "pypath.utils.seq.swissprot_seq"]], "pypath.utils.taxonomy": [[1048, "module-pypath.utils.taxonomy"]], "ensure_common_name() (in module pypath.utils.taxonomy)": [[1049, "pypath.utils.taxonomy.ensure_common_name"]], "ensure_ensembl_name() (in module pypath.utils.taxonomy)": [[1050, "pypath.utils.taxonomy.ensure_ensembl_name"]], "ensure_latin_name() (in module pypath.utils.taxonomy)": [[1051, "pypath.utils.taxonomy.ensure_latin_name"]], "ensure_ncbi_tax_id() (in module pypath.utils.taxonomy)": [[1052, "pypath.utils.taxonomy.ensure_ncbi_tax_id"]], "get_db() (in module pypath.utils.taxonomy)": [[1053, "pypath.utils.taxonomy.get_db"]], "init_db() (in module pypath.utils.taxonomy)": [[1054, "pypath.utils.taxonomy.init_db"]], "short_latin_names() (in module pypath.utils.taxonomy)": [[1055, "pypath.utils.taxonomy.short_latin_names"]], "shorten_latin_name() (in module pypath.utils.taxonomy)": [[1056, "pypath.utils.taxonomy.shorten_latin_name"]], "taxid_from_common_name() (in module pypath.utils.taxonomy)": [[1057, "pypath.utils.taxonomy.taxid_from_common_name"]], "taxid_from_dbptm_taxon_name() (in module pypath.utils.taxonomy)": [[1058, "pypath.utils.taxonomy.taxid_from_dbptm_taxon_name"]], "taxid_from_ensembl_name() (in module pypath.utils.taxonomy)": [[1059, "pypath.utils.taxonomy.taxid_from_ensembl_name"]], "taxid_from_latin_name() (in module pypath.utils.taxonomy)": [[1060, "pypath.utils.taxonomy.taxid_from_latin_name"]], "taxid_from_nonstandard() (in module pypath.utils.taxonomy)": [[1061, "pypath.utils.taxonomy.taxid_from_nonstandard"]], "uniprot_taxid() (in module pypath.utils.taxonomy)": [[1062, "pypath.utils.taxonomy.uniprot_taxid"]], "pypath.utils.unichem": [[1063, "module-pypath.utils.unichem"]], "unichem (class in pypath.utils.unichem)": [[1064, "pypath.utils.unichem.Unichem"]], "__init__() (pypath.utils.unichem.unichem method)": [[1064, "pypath.utils.unichem.Unichem.__init__"]], "connectivity_search() (pypath.utils.unichem.unichem method)": [[1064, "pypath.utils.unichem.Unichem.connectivity_search"]], "inchikey2anything() (pypath.utils.unichem.unichem method)": [[1064, "pypath.utils.unichem.Unichem.inchikey2anything"]], "info() (pypath.utils.unichem.unichem static method)": [[1064, "pypath.utils.unichem.Unichem.info"]], "smiles2chembl() (pypath.utils.unichem.unichem method)": [[1064, "pypath.utils.unichem.Unichem.smiles2chembl"]], "translate() (pypath.utils.unichem.unichem method)": [[1064, "pypath.utils.unichem.Unichem.translate"]], "usage() (pypath.utils.unichem.unichem method)": [[1064, "pypath.utils.unichem.Unichem.usage"]], "pypath.visual": [[1065, "module-pypath.visual"]], "pypath.visual.drawing": [[1066, "module-pypath.visual.drawing"]], "interset (class in pypath.visual.drawing)": [[1067, "pypath.visual.drawing.InterSet"]], "__init__() (pypath.visual.drawing.interset method)": [[1067, "pypath.visual.drawing.InterSet.__init__"]], "draw() (pypath.visual.drawing.interset method)": [[1067, "pypath.visual.drawing.InterSet.draw"]], "plot (class in pypath.visual.drawing)": [[1068, "pypath.visual.drawing.Plot"]], "__init__() (pypath.visual.drawing.plot method)": [[1068, "pypath.visual.drawing.Plot.__init__"]], "pypath.visual.igraph_drawing": [[1069, "module-pypath.visual.igraph_drawing"]], "abstractcairographdrawer (class in pypath.visual.igraph_drawing)": [[1070, "pypath.visual.igraph_drawing.AbstractCairoGraphDrawer"]], "__init__() (pypath.visual.igraph_drawing.abstractcairographdrawer method)": [[1070, "pypath.visual.igraph_drawing.AbstractCairoGraphDrawer.__init__"]], "arrowedgedrawer (in module pypath.visual.igraph_drawing)": [[1071, "pypath.visual.igraph_drawing.ArrowEdgeDrawer"]], "defaultgraphdrawerffsupport (class in pypath.visual.igraph_drawing)": [[1072, "pypath.visual.igraph_drawing.DefaultGraphDrawerFFsupport"]], "__init__() (pypath.visual.igraph_drawing.defaultgraphdrawerffsupport method)": [[1072, "pypath.visual.igraph_drawing.DefaultGraphDrawerFFsupport.__init__"]], "defaultvertexdrawer (in module pypath.visual.igraph_drawing)": [[1073, "pypath.visual.igraph_drawing.DefaultVertexDrawer"]], "textdrawer (in module pypath.visual.igraph_drawing)": [[1074, "pypath.visual.igraph_drawing.TextDrawer"]], "pypath.visual.igraph_drawing.edge": [[1075, "module-pypath.visual.igraph_drawing.edge"]], "abstractedgedrawer (class in pypath.visual.igraph_drawing.edge)": [[1076, "pypath.visual.igraph_drawing.edge.AbstractEdgeDrawer"]], "__init__() (pypath.visual.igraph_drawing.edge.abstractedgedrawer method)": [[1076, "pypath.visual.igraph_drawing.edge.AbstractEdgeDrawer.__init__"]], "draw_directed_edge() (pypath.visual.igraph_drawing.edge.abstractedgedrawer method)": [[1076, "pypath.visual.igraph_drawing.edge.AbstractEdgeDrawer.draw_directed_edge"]], "draw_loop_edge() (pypath.visual.igraph_drawing.edge.abstractedgedrawer method)": [[1076, "pypath.visual.igraph_drawing.edge.AbstractEdgeDrawer.draw_loop_edge"]], "draw_undirected_edge() (pypath.visual.igraph_drawing.edge.abstractedgedrawer method)": [[1076, "pypath.visual.igraph_drawing.edge.AbstractEdgeDrawer.draw_undirected_edge"]], "get_label_position() (pypath.visual.igraph_drawing.edge.abstractedgedrawer method)": [[1076, "pypath.visual.igraph_drawing.edge.AbstractEdgeDrawer.get_label_position"]], "alphavaryingedgedrawer (class in pypath.visual.igraph_drawing.edge)": [[1077, "pypath.visual.igraph_drawing.edge.AlphaVaryingEdgeDrawer"]], "__init__() (pypath.visual.igraph_drawing.edge.alphavaryingedgedrawer method)": [[1077, "pypath.visual.igraph_drawing.edge.AlphaVaryingEdgeDrawer.__init__"]], "draw_directed_edge() (pypath.visual.igraph_drawing.edge.alphavaryingedgedrawer method)": [[1077, "pypath.visual.igraph_drawing.edge.AlphaVaryingEdgeDrawer.draw_directed_edge"]], "draw_loop_edge() (pypath.visual.igraph_drawing.edge.alphavaryingedgedrawer method)": [[1077, "pypath.visual.igraph_drawing.edge.AlphaVaryingEdgeDrawer.draw_loop_edge"]], "draw_undirected_edge() (pypath.visual.igraph_drawing.edge.alphavaryingedgedrawer method)": [[1077, "pypath.visual.igraph_drawing.edge.AlphaVaryingEdgeDrawer.draw_undirected_edge"]], "get_label_position() (pypath.visual.igraph_drawing.edge.alphavaryingedgedrawer method)": [[1077, "pypath.visual.igraph_drawing.edge.AlphaVaryingEdgeDrawer.get_label_position"]], "arrowedgedrawer (class in pypath.visual.igraph_drawing.edge)": [[1078, "pypath.visual.igraph_drawing.edge.ArrowEdgeDrawer"]], "__init__() (pypath.visual.igraph_drawing.edge.arrowedgedrawer method)": [[1078, "pypath.visual.igraph_drawing.edge.ArrowEdgeDrawer.__init__"]], "draw_directed_edge() (pypath.visual.igraph_drawing.edge.arrowedgedrawer method)": [[1078, "pypath.visual.igraph_drawing.edge.ArrowEdgeDrawer.draw_directed_edge"]], "draw_loop_edge() (pypath.visual.igraph_drawing.edge.arrowedgedrawer method)": [[1078, "pypath.visual.igraph_drawing.edge.ArrowEdgeDrawer.draw_loop_edge"]], "draw_undirected_edge() (pypath.visual.igraph_drawing.edge.arrowedgedrawer method)": [[1078, "pypath.visual.igraph_drawing.edge.ArrowEdgeDrawer.draw_undirected_edge"]], "get_label_position() (pypath.visual.igraph_drawing.edge.arrowedgedrawer method)": [[1078, "pypath.visual.igraph_drawing.edge.ArrowEdgeDrawer.get_label_position"]], "darktolightedgedrawer (class in pypath.visual.igraph_drawing.edge)": [[1079, "pypath.visual.igraph_drawing.edge.DarkToLightEdgeDrawer"]], "__init__() (pypath.visual.igraph_drawing.edge.darktolightedgedrawer method)": [[1079, "pypath.visual.igraph_drawing.edge.DarkToLightEdgeDrawer.__init__"]], "draw_directed_edge() (pypath.visual.igraph_drawing.edge.darktolightedgedrawer method)": [[1079, "pypath.visual.igraph_drawing.edge.DarkToLightEdgeDrawer.draw_directed_edge"]], "draw_loop_edge() (pypath.visual.igraph_drawing.edge.darktolightedgedrawer method)": [[1079, "pypath.visual.igraph_drawing.edge.DarkToLightEdgeDrawer.draw_loop_edge"]], "draw_undirected_edge() (pypath.visual.igraph_drawing.edge.darktolightedgedrawer method)": [[1079, "pypath.visual.igraph_drawing.edge.DarkToLightEdgeDrawer.draw_undirected_edge"]], "get_label_position() (pypath.visual.igraph_drawing.edge.darktolightedgedrawer method)": [[1079, "pypath.visual.igraph_drawing.edge.DarkToLightEdgeDrawer.get_label_position"]], "lighttodarkedgedrawer (class in pypath.visual.igraph_drawing.edge)": [[1080, "pypath.visual.igraph_drawing.edge.LightToDarkEdgeDrawer"]], "__init__() (pypath.visual.igraph_drawing.edge.lighttodarkedgedrawer method)": [[1080, "pypath.visual.igraph_drawing.edge.LightToDarkEdgeDrawer.__init__"]], "draw_directed_edge() (pypath.visual.igraph_drawing.edge.lighttodarkedgedrawer method)": [[1080, "pypath.visual.igraph_drawing.edge.LightToDarkEdgeDrawer.draw_directed_edge"]], "draw_loop_edge() (pypath.visual.igraph_drawing.edge.lighttodarkedgedrawer method)": [[1080, "pypath.visual.igraph_drawing.edge.LightToDarkEdgeDrawer.draw_loop_edge"]], "draw_undirected_edge() (pypath.visual.igraph_drawing.edge.lighttodarkedgedrawer method)": [[1080, "pypath.visual.igraph_drawing.edge.LightToDarkEdgeDrawer.draw_undirected_edge"]], "get_label_position() (pypath.visual.igraph_drawing.edge.lighttodarkedgedrawer method)": [[1080, "pypath.visual.igraph_drawing.edge.LightToDarkEdgeDrawer.get_label_position"]], "taperededgedrawer (class in pypath.visual.igraph_drawing.edge)": [[1081, "pypath.visual.igraph_drawing.edge.TaperedEdgeDrawer"]], "__init__() (pypath.visual.igraph_drawing.edge.taperededgedrawer method)": [[1081, "pypath.visual.igraph_drawing.edge.TaperedEdgeDrawer.__init__"]], "draw_directed_edge() (pypath.visual.igraph_drawing.edge.taperededgedrawer method)": [[1081, "pypath.visual.igraph_drawing.edge.TaperedEdgeDrawer.draw_directed_edge"]], "draw_loop_edge() (pypath.visual.igraph_drawing.edge.taperededgedrawer method)": [[1081, "pypath.visual.igraph_drawing.edge.TaperedEdgeDrawer.draw_loop_edge"]], "draw_undirected_edge() (pypath.visual.igraph_drawing.edge.taperededgedrawer method)": [[1081, "pypath.visual.igraph_drawing.edge.TaperedEdgeDrawer.draw_undirected_edge"]], "get_label_position() (pypath.visual.igraph_drawing.edge.taperededgedrawer method)": [[1081, "pypath.visual.igraph_drawing.edge.TaperedEdgeDrawer.get_label_position"]], "pypath.visual.igraph_drawing.vertex": [[1082, "module-pypath.visual.igraph_drawing.vertex"]], "abstractcairodrawer (class in pypath.visual.igraph_drawing.vertex)": [[1083, "pypath.visual.igraph_drawing.vertex.AbstractCairoDrawer"]], "__init__() (pypath.visual.igraph_drawing.vertex.abstractcairodrawer method)": [[1083, "pypath.visual.igraph_drawing.vertex.AbstractCairoDrawer.__init__"]], "abstractcairovertexdrawer (class in pypath.visual.igraph_drawing.vertex)": [[1084, "pypath.visual.igraph_drawing.vertex.AbstractCairoVertexDrawer"]], "__init__() (pypath.visual.igraph_drawing.vertex.abstractcairovertexdrawer method)": [[1084, "pypath.visual.igraph_drawing.vertex.AbstractCairoVertexDrawer.__init__"]], "draw() (pypath.visual.igraph_drawing.vertex.abstractcairovertexdrawer method)": [[1084, "pypath.visual.igraph_drawing.vertex.AbstractCairoVertexDrawer.draw"]], "abstractdrawer (class in pypath.visual.igraph_drawing.vertex)": [[1085, "pypath.visual.igraph_drawing.vertex.AbstractDrawer"]], "__init__() (pypath.visual.igraph_drawing.vertex.abstractdrawer method)": [[1085, "pypath.visual.igraph_drawing.vertex.AbstractDrawer.__init__"]], "abstractvertexdrawer (class in pypath.visual.igraph_drawing.vertex)": [[1086, "pypath.visual.igraph_drawing.vertex.AbstractVertexDrawer"]], "__init__() (pypath.visual.igraph_drawing.vertex.abstractvertexdrawer method)": [[1086, "pypath.visual.igraph_drawing.vertex.AbstractVertexDrawer.__init__"]], "draw() (pypath.visual.igraph_drawing.vertex.abstractvertexdrawer method)": [[1086, "pypath.visual.igraph_drawing.vertex.AbstractVertexDrawer.draw"]], "defaultvertexdrawer (class in pypath.visual.igraph_drawing.vertex)": [[1087, "pypath.visual.igraph_drawing.vertex.DefaultVertexDrawer"]], "__init__() (pypath.visual.igraph_drawing.vertex.defaultvertexdrawer method)": [[1087, "pypath.visual.igraph_drawing.vertex.DefaultVertexDrawer.__init__"]], "draw() (pypath.visual.igraph_drawing.vertex.defaultvertexdrawer method)": [[1087, "pypath.visual.igraph_drawing.vertex.DefaultVertexDrawer.draw"]]}})
\ No newline at end of file
+Search.setIndex({"docnames": ["api/pypath", "api/pypath.core", "api/pypath.core.annot", "api/pypath.core.annot.Adhesome", "api/pypath.core.annot.Almen2009", "api/pypath.core.annot.AnnotationBase", "api/pypath.core.annot.AnnotationTable", "api/pypath.core.annot.Baccin2019", "api/pypath.core.annot.Biogps", "api/pypath.core.annot.CancerGeneCensus", "api/pypath.core.annot.Cancerdrugsdb", "api/pypath.core.annot.Cancersea", "api/pypath.core.annot.CellPhoneDB", "api/pypath.core.annot.CellPhoneDBComplex", "api/pypath.core.annot.CellSurfaceProteinAtlas", "api/pypath.core.annot.CellSurfaceProteinAtlasCellType", "api/pypath.core.annot.Cellcall", "api/pypath.core.annot.Cellcellinteractions", "api/pypath.core.annot.Cellchatdb", "api/pypath.core.annot.CellchatdbComplex", "api/pypath.core.annot.Cellinker", "api/pypath.core.annot.CellinkerComplex", "api/pypath.core.annot.Celltalkdb", "api/pypath.core.annot.Celltypist", "api/pypath.core.annot.Comppi", "api/pypath.core.annot.Connectomedb", "api/pypath.core.annot.Corum", "api/pypath.core.annot.CorumFuncat", "api/pypath.core.annot.CorumGO", "api/pypath.core.annot.Cpad", "api/pypath.core.annot.CustomAnnotation", "api/pypath.core.annot.Cytosig", "api/pypath.core.annot.Dgidb", "api/pypath.core.annot.Disgenet", "api/pypath.core.annot.Embrace", "api/pypath.core.annot.Exocarta", "api/pypath.core.annot.GOCustomIntercell", "api/pypath.core.annot.GOIntercell", "api/pypath.core.annot.Gpcrdb", "api/pypath.core.annot.GuideToPharmacology", "api/pypath.core.annot.HPO", "api/pypath.core.annot.Hgnc", "api/pypath.core.annot.HpmrComplex", "api/pypath.core.annot.HumanPlasmaMembraneReceptome", "api/pypath.core.annot.HumanProteinAtlas", "api/pypath.core.annot.HumanProteinAtlasSecretome", "api/pypath.core.annot.HumanProteinAtlasSubcellular", "api/pypath.core.annot.Humancellmap", "api/pypath.core.annot.Icellnet", "api/pypath.core.annot.IcellnetComplex", "api/pypath.core.annot.Integrins", "api/pypath.core.annot.InterPro", "api/pypath.core.annot.Intogen", "api/pypath.core.annot.Italk", "api/pypath.core.annot.KeggPathways", "api/pypath.core.annot.KeggPathwaysPC", "api/pypath.core.annot.Kinasedotcom", "api/pypath.core.annot.Kirouac2010", "api/pypath.core.annot.Lambert2018", "api/pypath.core.annot.LigandReceptor", "api/pypath.core.annot.Locate", "api/pypath.core.annot.Lrdb", "api/pypath.core.annot.Matrisome", "api/pypath.core.annot.Matrixdb", "api/pypath.core.annot.Mcam", "api/pypath.core.annot.Membranome", "api/pypath.core.annot.Msigdb", "api/pypath.core.annot.NetpathPathways", "api/pypath.core.annot.Opm", "api/pypath.core.annot.Panglaodb", "api/pypath.core.annot.Phobius", "api/pypath.core.annot.Phosphatome", "api/pypath.core.annot.Progeny", "api/pypath.core.annot.Ramilowski2015", "api/pypath.core.annot.Ramilowski2015Location", "api/pypath.core.annot.Scconnect", "api/pypath.core.annot.ScconnectComplex", "api/pypath.core.annot.SignalinkFunctions", "api/pypath.core.annot.SignalinkPathways", "api/pypath.core.annot.SignorPathways", "api/pypath.core.annot.Surfaceome", "api/pypath.core.annot.Talklr", "api/pypath.core.annot.Tcdb", "api/pypath.core.annot.Tfcensus", "api/pypath.core.annot.Topdb", "api/pypath.core.annot.UniprotFamilies", "api/pypath.core.annot.UniprotKeywords", "api/pypath.core.annot.UniprotLocations", "api/pypath.core.annot.UniprotTissues", "api/pypath.core.annot.UniprotTopologies", "api/pypath.core.annot.Vesiclepedia", "api/pypath.core.annot.Wang", "api/pypath.core.annot.Zhong2015", "api/pypath.core.annot.get_db", "api/pypath.core.annot.init_db", "api/pypath.core.attrs", "api/pypath.core.attrs.AttributeHandler", "api/pypath.core.common", "api/pypath.core.common.filter_network_df", "api/pypath.core.complex", "api/pypath.core.complex.AbstractComplexResource", "api/pypath.core.complex.CellPhoneDB", "api/pypath.core.complex.Cellchatdb", "api/pypath.core.complex.Cellinker", "api/pypath.core.complex.Compleat", "api/pypath.core.complex.ComplexAggregator", "api/pypath.core.complex.ComplexPortal", "api/pypath.core.complex.Corum", "api/pypath.core.complex.GuideToPharmacology", "api/pypath.core.complex.Havugimana", "api/pypath.core.complex.Hpmr", "api/pypath.core.complex.Humap", "api/pypath.core.complex.Humap2", "api/pypath.core.complex.Icellnet", "api/pypath.core.complex.Kegg", "api/pypath.core.complex.Pdb", "api/pypath.core.complex.Signor", "api/pypath.core.complex.Spike", "api/pypath.core.complex.all_complexes", "api/pypath.core.complex.get_db", "api/pypath.core.complex.init_db", "api/pypath.core.entity", "api/pypath.core.entity.Entity", "api/pypath.core.entity.EntityKey", "api/pypath.core.entity.EntityList", "api/pypath.core.enz_sub", "api/pypath.core.enz_sub.EnzymeSubstrateAggregator", "api/pypath.core.enz_sub.EnzymeSubstrateOrthologyProcessor", "api/pypath.core.enz_sub.EnzymeSubstrateProcessor", "api/pypath.core.enz_sub.get_db", "api/pypath.core.enz_sub.init_db", "api/pypath.core.evidence", "api/pypath.core.evidence.Evidence", "api/pypath.core.evidence.Evidences", "api/pypath.core.interaction", "api/pypath.core.interaction.Interaction", "api/pypath.core.interaction.InteractionDataFrameRecord", "api/pypath.core.interaction.InteractionKey", "api/pypath.core.intercell", "api/pypath.core.intercell.IntercellAnnotation", "api/pypath.core.intercell.get_db", "api/pypath.core.intercell.init_db", "api/pypath.core.intercell_annot", "api/pypath.core.intercell_annot.excludes", "api/pypath.core.network", "api/pypath.core.network.Network", "api/pypath.core.network.NetworkEntityCollection", "api/pypath.core.network.NetworkStatsRecord", "api/pypath.core.network.get_db", "api/pypath.core.network.init_db", "api/pypath.data", "api/pypath.disclaimer", "api/pypath.info", "api/pypath.inputs", "api/pypath.inputs.abs", "api/pypath.inputs.abs.abs_interactions", "api/pypath.inputs.acsn", "api/pypath.inputs.acsn.acsn_interactions", "api/pypath.inputs.acsn.acsn_interactions_sif", "api/pypath.inputs.adhesome", "api/pypath.inputs.adhesome.adhesome_annotations", "api/pypath.inputs.adhesome.adhesome_interactions", "api/pypath.inputs.adrecs", "api/pypath.inputs.adrecs.AdrecsAdr", "api/pypath.inputs.adrecs.AdrecsChildParent", "api/pypath.inputs.adrecs.AdrecsDrug", "api/pypath.inputs.adrecs.AdrecsDrugAdr", "api/pypath.inputs.adrecs.AdrecsTerm", "api/pypath.inputs.adrecs.adrecs_adr_ontology", "api/pypath.inputs.adrecs.adrecs_drug_adr", "api/pypath.inputs.adrecs.adrecs_drug_identifiers", "api/pypath.inputs.adrecs.adrecs_hierarchy", "api/pypath.inputs.almen2009", "api/pypath.inputs.almen2009.almen2009_annotations", "api/pypath.inputs.baccin2019", "api/pypath.inputs.baccin2019.baccin2019_annotations", "api/pypath.inputs.baccin2019.baccin2019_interactions", "api/pypath.inputs.biogps", "api/pypath.inputs.biogps.BiogpsDataset", "api/pypath.inputs.biogps.biogps_annotations", "api/pypath.inputs.biogps.biogps_datasets", "api/pypath.inputs.biogps.biogps_download", "api/pypath.inputs.biogps.biogps_download_all", "api/pypath.inputs.biogrid", "api/pypath.inputs.biogrid.biogrid_all_interactions", "api/pypath.inputs.biogrid.biogrid_interactions", "api/pypath.inputs.biomart", "api/pypath.inputs.biomart.biomart_homology", "api/pypath.inputs.biomart.biomart_microarray", "api/pypath.inputs.biomart.biomart_microarray_types", "api/pypath.inputs.biomart.biomart_microarrays", "api/pypath.inputs.biomart.biomart_query", "api/pypath.inputs.biomodels", "api/pypath.inputs.biomodels.download_single_model", "api/pypath.inputs.biomodels.get_all_models", "api/pypath.inputs.biomodels.get_biomodels", "api/pypath.inputs.biomodels.get_biomodels_req", "api/pypath.inputs.biomodels.get_single_model", "api/pypath.inputs.ca1", "api/pypath.inputs.ca1.ca1_interactions", "api/pypath.inputs.cancercellmap", "api/pypath.inputs.cancercellmap.ccmap_interactions", "api/pypath.inputs.cancerdrugsdb", "api/pypath.inputs.cancerdrugsdb.cancerdrugsdb_annotations", "api/pypath.inputs.cancerdrugsdb.cancerdrugsdb_download", "api/pypath.inputs.cancerdrugsdb.cancerdrugsdb_interactions", "api/pypath.inputs.cancersea", "api/pypath.inputs.cancersea.cancersea_annotations", "api/pypath.inputs.cell", "api/pypath.inputs.cell.cell_supplementary", "api/pypath.inputs.cellcall", "api/pypath.inputs.cellcall.cellcall_annotations", "api/pypath.inputs.cellcall.cellcall_download", "api/pypath.inputs.cellcall.cellcall_download_all", "api/pypath.inputs.cellcall.cellcall_interactions", "api/pypath.inputs.cellcellinteractions", "api/pypath.inputs.cellcellinteractions.cellcellinteractions_annotations", "api/pypath.inputs.cellchatdb", "api/pypath.inputs.cellchatdb.cellchatdb_annotations", "api/pypath.inputs.cellchatdb.cellchatdb_cofactors", "api/pypath.inputs.cellchatdb.cellchatdb_complexes", "api/pypath.inputs.cellchatdb.cellchatdb_download", "api/pypath.inputs.cellchatdb.cellchatdb_interactions", "api/pypath.inputs.cellinker", "api/pypath.inputs.cellinker.CellinkerInteraction", "api/pypath.inputs.cellinker.cellinker_annotations", "api/pypath.inputs.cellinker.cellinker_complex_annotations", "api/pypath.inputs.cellinker.cellinker_complexes", "api/pypath.inputs.cellinker.cellinker_complexes_raw", "api/pypath.inputs.cellinker.cellinker_lr_interactions", "api/pypath.inputs.cellinker.cellinker_lr_interactions_raw", "api/pypath.inputs.cellinker.cellinker_protein_annotations", "api/pypath.inputs.cellinker.cellinker_smol_interactions", "api/pypath.inputs.cellinker.cellinker_smol_interactions_raw", "api/pypath.inputs.cellinker.components_to_complex", "api/pypath.inputs.cellphonedb", "api/pypath.inputs.cellphonedb.CellPhoneDBAnnotation", "api/pypath.inputs.cellphonedb.cellphonedb_complex_annotations", "api/pypath.inputs.cellphonedb.cellphonedb_complexes", "api/pypath.inputs.cellphonedb.cellphonedb_interactions", "api/pypath.inputs.cellphonedb.cellphonedb_ligands_receptors", "api/pypath.inputs.cellphonedb.cellphonedb_protein_annotations", "api/pypath.inputs.celltalkdb", "api/pypath.inputs.celltalkdb.celltalkdb_annotations", "api/pypath.inputs.celltalkdb.celltalkdb_download", "api/pypath.inputs.celltalkdb.celltalkdb_interactions", "api/pypath.inputs.celltypist", "api/pypath.inputs.celltypist.celltypist_annotations", "api/pypath.inputs.chembl", "api/pypath.inputs.chembl.chembl_activities", "api/pypath.inputs.chembl.chembl_assays", "api/pypath.inputs.chembl.chembl_documents", "api/pypath.inputs.chembl.chembl_drug_indications", "api/pypath.inputs.chembl.chembl_mechanisms", "api/pypath.inputs.chembl.chembl_molecules", "api/pypath.inputs.chembl.chembl_targets", "api/pypath.inputs.clinvar", "api/pypath.inputs.clinvar.clinvar_citations", "api/pypath.inputs.clinvar.clinvar_raw", "api/pypath.inputs.collectri", "api/pypath.inputs.collectri.collectri_interactions", "api/pypath.inputs.collectri.collectri_raw", "api/pypath.inputs.common", "api/pypath.inputs.common.csv_sep_change", "api/pypath.inputs.common.glom_fields", "api/pypath.inputs.common.json_extract", "api/pypath.inputs.common.json_read", "api/pypath.inputs.common.read_table", "api/pypath.inputs.common.read_xls", "api/pypath.inputs.compath", "api/pypath.inputs.compath.compath_mappings", "api/pypath.inputs.compleat", "api/pypath.inputs.compleat.compleat_complexes", "api/pypath.inputs.compleat.compleat_raw", "api/pypath.inputs.complexportal", "api/pypath.inputs.complexportal.complexportal_complexes", "api/pypath.inputs.comppi", "api/pypath.inputs.comppi.comppi_interaction_locations", "api/pypath.inputs.comppi.comppi_locations", "api/pypath.inputs.connectomedb", "api/pypath.inputs.connectomedb.connectomedb_annotations", "api/pypath.inputs.connectomedb.connectomedb_interactions", "api/pypath.inputs.corum", "api/pypath.inputs.corum.corum_complexes", "api/pypath.inputs.cosmic", "api/pypath.inputs.cosmic.cancer_gene_census_annotations", "api/pypath.inputs.cpad", "api/pypath.inputs.cpad.cpad_annotations", "api/pypath.inputs.cpad.cpad_pathway_cancer", "api/pypath.inputs.cpad.get_cpad", "api/pypath.inputs.cpdb", "api/pypath.inputs.cpdb.cpdb_interactions", "api/pypath.inputs.cpdb.cpdb_interactions_ltp", "api/pypath.inputs.credentials", "api/pypath.inputs.credentials.credentials", "api/pypath.inputs.csa", "api/pypath.inputs.csa.get_csa", "api/pypath.inputs.cspa", "api/pypath.inputs.cspa.cspa_annotations", "api/pypath.inputs.cspa.cspa_cell_type_annotations", "api/pypath.inputs.cspa.cspa_cell_types", "api/pypath.inputs.ctdbase", "api/pypath.inputs.ctdbase.ctdbase_relations", "api/pypath.inputs.ctdbase.ctdbase_vocabulary", "api/pypath.inputs.cytosig", "api/pypath.inputs.cytosig.cytosig_annotations", "api/pypath.inputs.cytosig.cytosig_df", "api/pypath.inputs.dbptm", "api/pypath.inputs.dbptm.dbptm_enzyme_substrate", "api/pypath.inputs.dbptm.dbptm_enzyme_substrate_old", "api/pypath.inputs.dbptm.dbptm_interactions", "api/pypath.inputs.ddinter", "api/pypath.inputs.ddinter.ddinter_drug_interactions", "api/pypath.inputs.ddinter.ddinter_identifiers", "api/pypath.inputs.ddinter.ddinter_interactions", "api/pypath.inputs.ddinter.ddinter_mappings", "api/pypath.inputs.ddinter.ddinter_n_drugs", "api/pypath.inputs.deathdomain", "api/pypath.inputs.deathdomain.deathdomain_interactions", "api/pypath.inputs.deathdomain.deathdomain_interactions_rescued", "api/pypath.inputs.depod", "api/pypath.inputs.depod.depod_enzyme_substrate", "api/pypath.inputs.depod.depod_interactions", "api/pypath.inputs.dgidb", "api/pypath.inputs.dgidb.dgidb_annotations", "api/pypath.inputs.dgidb.dgidb_interactions", "api/pypath.inputs.dgidb.get_dgidb_old", "api/pypath.inputs.dip", "api/pypath.inputs.dip.dip_interactions", "api/pypath.inputs.dip.dip_login", "api/pypath.inputs.diseases", "api/pypath.inputs.diseases.diseases_general", "api/pypath.inputs.diseases.experiments_filtered", "api/pypath.inputs.diseases.experiments_full", "api/pypath.inputs.diseases.knowledge_filtered", "api/pypath.inputs.diseases.knowledge_full", "api/pypath.inputs.diseases.textmining_filtered", "api/pypath.inputs.diseases.textmining_full", "api/pypath.inputs.domino", "api/pypath.inputs.domino.domino_ddi", "api/pypath.inputs.domino.domino_enzsub", "api/pypath.inputs.domino.domino_interactions", "api/pypath.inputs.domino.get_domino", "api/pypath.inputs.dorothea", "api/pypath.inputs.dorothea.DorotheaInteraction", "api/pypath.inputs.dorothea.dorothea_full_raw", "api/pypath.inputs.dorothea.dorothea_interactions", "api/pypath.inputs.dorothea.dorothea_interactions_old", "api/pypath.inputs.dorothea.dorothea_old_csv", "api/pypath.inputs.dorothea.dorothea_rda_raw", "api/pypath.inputs.dorothea.get_dorothea_old", "api/pypath.inputs.dorothea.get_tfregulons", "api/pypath.inputs.dorothea.tfregulons_interactions", "api/pypath.inputs.dorothea.tfregulons_interactions_old", "api/pypath.inputs.drugbank", "api/pypath.inputs.drugbank.DrugbankFull", "api/pypath.inputs.drugbank.drugbank_annotations", "api/pypath.inputs.drugbank.drugbank_drugs", "api/pypath.inputs.drugbank.drugbank_interactions", "api/pypath.inputs.drugbank.drugbank_mapping", "api/pypath.inputs.drugbank.drugbank_raw_interactions", "api/pypath.inputs.drugcentral", "api/pypath.inputs.drugcentral.drugcentral_drugs", "api/pypath.inputs.drugcentral.drugcentral_interactions", "api/pypath.inputs.drugcentral.drugcentral_mapping", "api/pypath.inputs.ebi", "api/pypath.inputs.ebi.ebi_rest", "api/pypath.inputs.elm", "api/pypath.inputs.elm.elm_classes", "api/pypath.inputs.elm.elm_domains", "api/pypath.inputs.elm.elm_instances", "api/pypath.inputs.elm.elm_interactions", "api/pypath.inputs.embopress", "api/pypath.inputs.embopress.embopress_supplementary", "api/pypath.inputs.embrace", "api/pypath.inputs.embrace.embrace_annotations", "api/pypath.inputs.embrace.embrace_interactions", "api/pypath.inputs.embrace.embrace_raw", "api/pypath.inputs.embrace.embrace_translated", "api/pypath.inputs.encode", "api/pypath.inputs.encode.encode_tf_mirna_interactions", "api/pypath.inputs.ensembl", "api/pypath.inputs.ensembl.ensembl_organisms", "api/pypath.inputs.eutils", "api/pypath.inputs.eutils.esummary", "api/pypath.inputs.exocarta", "api/pypath.inputs.exocarta.get_exocarta", "api/pypath.inputs.exocarta.get_vesiclepedia", "api/pypath.inputs.expasy", "api/pypath.inputs.expasy.expasy_enzyme_classes", "api/pypath.inputs.expasy.expasy_enzymes", "api/pypath.inputs.genecards", "api/pypath.inputs.genecards.genecards_datasheet", "api/pypath.inputs.genecards.genecards_soup", "api/pypath.inputs.genecards.genecards_summaries", "api/pypath.inputs.get_method", "api/pypath.inputs.go", "api/pypath.inputs.go.get_go_desc", "api/pypath.inputs.go.get_go_quick", "api/pypath.inputs.go.get_goslim", "api/pypath.inputs.go.go_ancestors", "api/pypath.inputs.go.go_ancestors_goose", "api/pypath.inputs.go.go_ancestors_quickgo", "api/pypath.inputs.go.go_annotations", "api/pypath.inputs.go.go_annotations_all", "api/pypath.inputs.go.go_annotations_goa", "api/pypath.inputs.go.go_annotations_goose", "api/pypath.inputs.go.go_annotations_quickgo", "api/pypath.inputs.go.go_annotations_solr", "api/pypath.inputs.go.go_annotations_uniprot", "api/pypath.inputs.go.go_descendants", "api/pypath.inputs.go.go_descendants_goose", "api/pypath.inputs.go.go_descendants_quickgo", "api/pypath.inputs.go.go_descendants_to_ancestors", "api/pypath.inputs.go.go_terms", "api/pypath.inputs.go.go_terms_goose", "api/pypath.inputs.go.go_terms_quickgo", "api/pypath.inputs.go.go_terms_solr", "api/pypath.inputs.gpcrdb", "api/pypath.inputs.gpcrdb.gpcrdb_annotations", "api/pypath.inputs.graphviz", "api/pypath.inputs.graphviz.graphviz_attrs", "api/pypath.inputs.guide2pharma", "api/pypath.inputs.guide2pharma.guide2pharma_complexes", "api/pypath.inputs.guide2pharma.guide2pharma_download", "api/pypath.inputs.guide2pharma.guide2pharma_interactions", "api/pypath.inputs.gutmgene", "api/pypath.inputs.gutmgene.GutmgeneAnnotation", "api/pypath.inputs.gutmgene.GutmgeneRaw", "api/pypath.inputs.gutmgene.gutmgene_annotations", "api/pypath.inputs.gutmgene.gutmgene_raw", "api/pypath.inputs.havugimana", "api/pypath.inputs.havugimana.get_havugimana", "api/pypath.inputs.havugimana.havugimana_complexes", "api/pypath.inputs.hgnc", "api/pypath.inputs.hgnc.hgnc_genegroups", "api/pypath.inputs.hippie", "api/pypath.inputs.hippie.hippie_interactions", "api/pypath.inputs.hmdb", "api/pypath.inputs.hmdb.common", "api/pypath.inputs.hmdb.common.iter", "api/pypath.inputs.hmdb.common.mapping", "api/pypath.inputs.hmdb.common.raw", "api/pypath.inputs.hmdb.common.table", "api/pypath.inputs.hmdb.metabolites", "api/pypath.inputs.hmdb.metabolites.iter", "api/pypath.inputs.hmdb.metabolites.mapping", "api/pypath.inputs.hmdb.metabolites.raw", "api/pypath.inputs.hmdb.metabolites.table", "api/pypath.inputs.hmdb.proteins", "api/pypath.inputs.hmdb.proteins.iter", "api/pypath.inputs.hmdb.proteins.mapping", "api/pypath.inputs.hmdb.proteins.raw", "api/pypath.inputs.hmdb.proteins.table", "api/pypath.inputs.hmdb.schema", "api/pypath.inputs.hmdb.schema.common", "api/pypath.inputs.hmdb.schema.common.Field", "api/pypath.inputs.hmdb.schema.metabolites", "api/pypath.inputs.hmdb.schema.proteins", "api/pypath.inputs.hmdb.structures", "api/pypath.inputs.hmdb.structures.sdf", "api/pypath.inputs.hmdb.visual", "api/pypath.inputs.hmdb.visual.show_structure", "api/pypath.inputs.hmdb.visual.structure_svg", "api/pypath.inputs.hmdb.xml", "api/pypath.inputs.hmdb.xml.hmdb_xml", "api/pypath.inputs.homologene", "api/pypath.inputs.homologene.get_homologene", "api/pypath.inputs.homologene.homologene_dict", "api/pypath.inputs.homologene.homologene_uniprot_dict", "api/pypath.inputs.hpmr", "api/pypath.inputs.hpmr.HpmrInteraction", "api/pypath.inputs.hpmr.get_hpmr", "api/pypath.inputs.hpmr.hpmr_annotations", "api/pypath.inputs.hpmr.hpmr_complexes", "api/pypath.inputs.hpmr.hpmr_interactions", "api/pypath.inputs.hpo", "api/pypath.inputs.hpo.hpo_annotations", "api/pypath.inputs.hpo.hpo_diseases", "api/pypath.inputs.hpo.hpo_ontology", "api/pypath.inputs.hpo.hpo_terms", "api/pypath.inputs.hprd", "api/pypath.inputs.hprd.get_hprd", "api/pypath.inputs.hprd.hprd_enzyme_substrate", "api/pypath.inputs.hprd.hprd_interactions", "api/pypath.inputs.hprd.hprd_interactions_htp", "api/pypath.inputs.htri", "api/pypath.inputs.htri.htri_interactions", "api/pypath.inputs.humancellmap", "api/pypath.inputs.humancellmap.humancellmap_annotations", "api/pypath.inputs.humap", "api/pypath.inputs.humap.humap2_complexes", "api/pypath.inputs.humap.humap_complexes", "api/pypath.inputs.humsavar", "api/pypath.inputs.humsavar.uniprot_variants", "api/pypath.inputs.huri", "api/pypath.inputs.huri.hi_i_interactions", "api/pypath.inputs.huri.hi_ii_interactions", "api/pypath.inputs.huri.hi_iii_old", "api/pypath.inputs.huri.hi_union_interactions", "api/pypath.inputs.huri.huri_interactions", "api/pypath.inputs.huri.lit_bm_13_interactions", "api/pypath.inputs.huri.lit_bm_17_interactions", "api/pypath.inputs.huri.lit_bm_interactions", "api/pypath.inputs.huri.rolland_hi_ii_14", "api/pypath.inputs.huri.vidal_hi_iii_old", "api/pypath.inputs.huri.yang2016_interactions", "api/pypath.inputs.huri.yu2011_interactions", "api/pypath.inputs.i3d", "api/pypath.inputs.i3d.get_i3d", "api/pypath.inputs.icellnet", "api/pypath.inputs.icellnet.IcellnetRecord", "api/pypath.inputs.icellnet.icellnet_annotations", "api/pypath.inputs.icellnet.icellnet_complexes", "api/pypath.inputs.icellnet.icellnet_interactions", "api/pypath.inputs.ielm", "api/pypath.inputs.ielm.get_ielm", "api/pypath.inputs.ielm.get_ielm_huge", "api/pypath.inputs.imweb", "api/pypath.inputs.imweb.get_imweb", "api/pypath.inputs.imweb.get_imweb_req", "api/pypath.inputs.innatedb", "api/pypath.inputs.innatedb.innatedb_interactions", "api/pypath.inputs.instruct", "api/pypath.inputs.instruct.get_instruct", "api/pypath.inputs.instruct.get_instruct_offsets", "api/pypath.inputs.intact", "api/pypath.inputs.intact.intact_interactions", "api/pypath.inputs.integrins", "api/pypath.inputs.integrins.get_integrins", "api/pypath.inputs.interpro", "api/pypath.inputs.interpro.interpro2go_annotations", "api/pypath.inputs.interpro.interpro_annotations", "api/pypath.inputs.interpro.interpro_entries", "api/pypath.inputs.interpro.interpro_xrefs", "api/pypath.inputs.intogen", "api/pypath.inputs.intogen.intogen_annotations", "api/pypath.inputs.ipi", "api/pypath.inputs.ipi.ipi_uniprot", "api/pypath.inputs.iptmnet", "api/pypath.inputs.iptmnet.IptmnetInteraction", "api/pypath.inputs.iptmnet.iptmnet_interactions", "api/pypath.inputs.italk", "api/pypath.inputs.italk.italk_annotations", "api/pypath.inputs.italk.italk_interactions", "api/pypath.inputs.italk.italk_raw", "api/pypath.inputs.kea", "api/pypath.inputs.kea.kea_enzyme_substrate", "api/pypath.inputs.kea.kea_interactions", "api/pypath.inputs.kegg", "api/pypath.inputs.kegg.KeggPathway", "api/pypath.inputs.kegg.kegg_dbget", "api/pypath.inputs.kegg.kegg_interactions", "api/pypath.inputs.kegg.kegg_medicus", "api/pypath.inputs.kegg.kegg_medicus_complexes", "api/pypath.inputs.kegg.kegg_medicus_interactions", "api/pypath.inputs.kegg.kegg_pathway_annotations", "api/pypath.inputs.kegg.kegg_pathway_annotations_pathwaycommons", "api/pypath.inputs.kegg.kegg_pathways", "api/pypath.inputs.kegg_api", "api/pypath.inputs.kegg_api.disease_to_drug", "api/pypath.inputs.kegg_api.disease_to_gene", "api/pypath.inputs.kegg_api.disease_to_pathway", "api/pypath.inputs.kegg_api.drug_to_disease", "api/pypath.inputs.kegg_api.drug_to_drug", "api/pypath.inputs.kegg_api.drug_to_gene", "api/pypath.inputs.kegg_api.drug_to_pathway", "api/pypath.inputs.kegg_api.gene_to_disease", "api/pypath.inputs.kegg_api.gene_to_drug", "api/pypath.inputs.kegg_api.gene_to_pathway", "api/pypath.inputs.kegg_api.kegg_drug_to_chebi", "api/pypath.inputs.kegg_api.kegg_gene_to_ncbi_geneid", "api/pypath.inputs.kegg_api.kegg_gene_to_uniprot", "api/pypath.inputs.kegg_api.pathway_to_disease", "api/pypath.inputs.kegg_api.pathway_to_drug", "api/pypath.inputs.kegg_api.pathway_to_gene", "api/pypath.inputs.kinasedotcom", "api/pypath.inputs.kinasedotcom.kinasedotcom_annotations", "api/pypath.inputs.kirouac2010", "api/pypath.inputs.kirouac2010.kirouac2010_interactions", "api/pypath.inputs.lambert2018", "api/pypath.inputs.lambert2018.lambert2018_annotations", "api/pypath.inputs.lambert2018.lambert2018_s1_raw", "api/pypath.inputs.laudanna", "api/pypath.inputs.laudanna.laudanna_directions", "api/pypath.inputs.laudanna.laudanna_effects", "api/pypath.inputs.li2012", "api/pypath.inputs.li2012.get_li2012", "api/pypath.inputs.li2012.li2012_dmi", "api/pypath.inputs.li2012.li2012_enzyme_substrate", "api/pypath.inputs.li2012.li2012_interactions", "api/pypath.inputs.lincs", "api/pypath.inputs.lincs.lincs_compounds", "api/pypath.inputs.lmpid", "api/pypath.inputs.lmpid.lmpid_dmi", "api/pypath.inputs.lmpid.lmpid_interactions", "api/pypath.inputs.lmpid.load_lmpid", "api/pypath.inputs.lncdisease", "api/pypath.inputs.lncdisease.lncdisease_interactions", "api/pypath.inputs.lncrnadb", "api/pypath.inputs.lncrnadb.lncrnadb_interactions", "api/pypath.inputs.locate", "api/pypath.inputs.locate.locate_localizations", "api/pypath.inputs.lrdb", "api/pypath.inputs.lrdb.LrdbAnnotation", "api/pypath.inputs.lrdb.lrdb_annotations", "api/pypath.inputs.lrdb.lrdb_interactions", "api/pypath.inputs.macrophage", "api/pypath.inputs.macrophage.macrophage_interactions", "api/pypath.inputs.main", "api/pypath.inputs.matrisome", "api/pypath.inputs.matrisome.matrisome_annotations", "api/pypath.inputs.matrixdb", "api/pypath.inputs.matrixdb.matrixdb_annotations", "api/pypath.inputs.matrixdb.matrixdb_ecm_proteins", "api/pypath.inputs.matrixdb.matrixdb_interactions", "api/pypath.inputs.matrixdb.matrixdb_membrane_proteins", "api/pypath.inputs.matrixdb.matrixdb_secreted_proteins", "api/pypath.inputs.mcam", "api/pypath.inputs.mcam.mcam_cell_adhesion_molecules", "api/pypath.inputs.membranome", "api/pypath.inputs.membranome.membranome_annotations", "api/pypath.inputs.mimp", "api/pypath.inputs.mimp.get_kinase_class", "api/pypath.inputs.mimp.mimp_enzyme_substrate", "api/pypath.inputs.mimp.mimp_interactions", "api/pypath.inputs.mir2disease", "api/pypath.inputs.mir2disease.mir2disease_interactions", "api/pypath.inputs.mirbase", "api/pypath.inputs.mirbase.get_mirbase_aliases", "api/pypath.inputs.mirbase.mirbase_ids", "api/pypath.inputs.mirbase.mirbase_mature", "api/pypath.inputs.mirbase.mirbase_mature_all", "api/pypath.inputs.mirbase.mirbase_precursor", "api/pypath.inputs.mirbase.mirbase_precursor_all", "api/pypath.inputs.mirbase.mirbase_precursor_to_mature", "api/pypath.inputs.mirdeathdb", "api/pypath.inputs.mirdeathdb.mirdeathdb_interactions", "api/pypath.inputs.mirecords", "api/pypath.inputs.mirecords.mirecords_interactions", "api/pypath.inputs.mirtarbase", "api/pypath.inputs.mirtarbase.mirtarbase_interactions", "api/pypath.inputs.mitab", "api/pypath.inputs.mitab.mitab_field_list", "api/pypath.inputs.mitab.mitab_field_uniprot", "api/pypath.inputs.mppi", "api/pypath.inputs.mppi.mppi_interactions", "api/pypath.inputs.msigdb", "api/pypath.inputs.msigdb.msigdb_annotations", "api/pypath.inputs.msigdb.msigdb_download", "api/pypath.inputs.msigdb.msigdb_download_collections", "api/pypath.inputs.ncrdeathdb", "api/pypath.inputs.ncrdeathdb.ncrdeathdb_interactions", "api/pypath.inputs.negatome", "api/pypath.inputs.negatome.negatome_interactions", "api/pypath.inputs.netbiol", "api/pypath.inputs.netbiol.arn_interactions", "api/pypath.inputs.netbiol.nrf2ome_interactions", "api/pypath.inputs.netpath", "api/pypath.inputs.netpath.netpath_interactions", "api/pypath.inputs.netpath.netpath_names", "api/pypath.inputs.netpath.netpath_pathway_annotations", "api/pypath.inputs.offsides", "api/pypath.inputs.offsides.offsides_side_effects", "api/pypath.inputs.oma", "api/pypath.inputs.oma.oma_orthologs", "api/pypath.inputs.oma.oma_table", "api/pypath.inputs.ontology", "api/pypath.inputs.ontology.listof_ontologies", "api/pypath.inputs.ontology.ontology", "api/pypath.inputs.opentargets", "api/pypath.inputs.opentargets.opentargets_adverse_reactions", "api/pypath.inputs.opentargets.opentargets_baseline_expression", "api/pypath.inputs.opentargets.opentargets_direct_score", "api/pypath.inputs.opentargets.opentargets_general", "api/pypath.inputs.opentargets.opentargets_indirect_score", "api/pypath.inputs.opm", "api/pypath.inputs.opm.opm_annotations", "api/pypath.inputs.oreganno", "api/pypath.inputs.oreganno.oreganno_interactions", "api/pypath.inputs.oreganno.oreganno_raw", "api/pypath.inputs.panglaodb", "api/pypath.inputs.panglaodb.panglaodb_annotations", "api/pypath.inputs.panglaodb.panglaodb_raw", "api/pypath.inputs.pathophenodb", "api/pypath.inputs.pathophenodb.DiseasePathogen", "api/pypath.inputs.pathophenodb.disease_pathogen_interactions", "api/pypath.inputs.pathwaycommons", "api/pypath.inputs.pathwaycommons.PathwayCommonsInteraction", "api/pypath.inputs.pathwaycommons.PathwayCommonsResource", "api/pypath.inputs.pathwaycommons.pathwaycommons_bind_interactions", "api/pypath.inputs.pathwaycommons.pathwaycommons_biogrid_interactions", "api/pypath.inputs.pathwaycommons.pathwaycommons_corum_interactions", "api/pypath.inputs.pathwaycommons.pathwaycommons_dip_interactions", "api/pypath.inputs.pathwaycommons.pathwaycommons_hprd_interactions", "api/pypath.inputs.pathwaycommons.pathwaycommons_inoh_interactions", "api/pypath.inputs.pathwaycommons.pathwaycommons_intact_interactions", "api/pypath.inputs.pathwaycommons.pathwaycommons_interactions", "api/pypath.inputs.pathwaycommons.pathwaycommons_kegg_interactions", "api/pypath.inputs.pathwaycommons.pathwaycommons_netpath_interactions", "api/pypath.inputs.pathwaycommons.pathwaycommons_panther_interactions", "api/pypath.inputs.pathwaycommons.pathwaycommons_phosphosite_interactions", "api/pypath.inputs.pathwaycommons.pathwaycommons_reactome_interactions", "api/pypath.inputs.pathwaycommons.pathwaycommons_wikipathways_interactions", "api/pypath.inputs.pazar", "api/pypath.inputs.pazar.pazar_interactions", "api/pypath.inputs.pdb", "api/pypath.inputs.pdb.pdb_chains", "api/pypath.inputs.pdb.pdb_complexes", "api/pypath.inputs.pdb.pdb_uniprot", "api/pypath.inputs.pdzbase", "api/pypath.inputs.pdzbase.pdzbase_interactions", "api/pypath.inputs.pepcyber", "api/pypath.inputs.pepcyber.pepcyber_details", "api/pypath.inputs.pepcyber.pepcyber_interactions", "api/pypath.inputs.pfam", "api/pypath.inputs.pfam.pfam_names", "api/pypath.inputs.pfam.pfam_pdb", "api/pypath.inputs.pfam.pfam_regions", "api/pypath.inputs.pfam.pfam_uniprot", "api/pypath.inputs.pharos", "api/pypath.inputs.pharos.pharos_diseases", "api/pypath.inputs.pharos.pharos_expression", "api/pypath.inputs.pharos.pharos_general", "api/pypath.inputs.pharos.pharos_gtex", "api/pypath.inputs.pharos.pharos_ligands", "api/pypath.inputs.pharos.pharos_orthologs", "api/pypath.inputs.pharos.pharos_targets", "api/pypath.inputs.pharos.pharos_xrefs", "api/pypath.inputs.phobius", "api/pypath.inputs.phobius.phobius_annotations", "api/pypath.inputs.phosphatome", "api/pypath.inputs.phosphatome.phosphatome_annotations", "api/pypath.inputs.phosphoelm", "api/pypath.inputs.phosphoelm.phosphoelm_enzyme_substrate", "api/pypath.inputs.phosphoelm.phosphoelm_interactions", "api/pypath.inputs.phosphoelm.phosphoelm_kinases", "api/pypath.inputs.phosphonetworks", "api/pypath.inputs.phosphonetworks.phosphonetworks_enzyme_substrate", "api/pypath.inputs.phosphonetworks.phosphonetworks_interactions", "api/pypath.inputs.phosphopoint", "api/pypath.inputs.phosphopoint.phosphopoint_directions", "api/pypath.inputs.phosphopoint.phosphopoint_interactions", "api/pypath.inputs.phosphosite", "api/pypath.inputs.phosphosite.phosphosite_directions", "api/pypath.inputs.phosphosite.phosphosite_enzyme_substrate", "api/pypath.inputs.phosphosite.phosphosite_interactions", "api/pypath.inputs.phosphosite.phosphosite_interactions_all", "api/pypath.inputs.phosphosite.phosphosite_interactions_curated", "api/pypath.inputs.phosphosite.phosphosite_interactions_new", "api/pypath.inputs.phosphosite.phosphosite_interactions_noref", "api/pypath.inputs.phosphosite.phosphosite_ptm_orthology", "api/pypath.inputs.phosphosite.phosphosite_ptms", "api/pypath.inputs.phosphosite.phosphosite_regsites", "api/pypath.inputs.phosphosite.phosphosite_regsites_one_organism", "api/pypath.inputs.phosphosite.regsites_tab", "api/pypath.inputs.pisa", "api/pypath.inputs.pisa.PisaBond", "api/pypath.inputs.pisa.pisa_bonds", "api/pypath.inputs.pisa.pisa_interfaces", "api/pypath.inputs.pro", "api/pypath.inputs.pro.get_pro", "api/pypath.inputs.pro.pro_mapping", "api/pypath.inputs.progeny", "api/pypath.inputs.progeny.progeny_annotations", "api/pypath.inputs.progeny.progeny_raw", "api/pypath.inputs.proteinatlas", "api/pypath.inputs.proteinatlas.get_proteinatlas", "api/pypath.inputs.proteinatlas.proteinatlas_annotations", "api/pypath.inputs.proteinatlas.proteinatlas_secretome_annotations", "api/pypath.inputs.proteinatlas.proteinatlas_subcellular_annotations", "api/pypath.inputs.proteins", "api/pypath.inputs.proteins.variants", "api/pypath.inputs.protmapper", "api/pypath.inputs.protmapper.get_protmapper", "api/pypath.inputs.protmapper.protmapper_enzyme_substrate", "api/pypath.inputs.protmapper.protmapper_interactions", "api/pypath.inputs.pubchem", "api/pypath.inputs.pubchem.pubchem_mapping", "api/pypath.inputs.pubmed", "api/pypath.inputs.pubmed.get_pmid", "api/pypath.inputs.pubmed.get_pubmeds", "api/pypath.inputs.pubmed.only_pmids", "api/pypath.inputs.pubmed.open_pubmed", "api/pypath.inputs.pubmed.pmids_dict", "api/pypath.inputs.pubmed.pmids_list", "api/pypath.inputs.ramilowski2015", "api/pypath.inputs.ramilowski2015.ramilowski_interactions", "api/pypath.inputs.ramilowski2015.ramilowski_locations", "api/pypath.inputs.ramp", "api/pypath.inputs.ramp.ramp_id_types", "api/pypath.inputs.ramp.ramp_id_types_2", "api/pypath.inputs.ramp.ramp_list_tables", "api/pypath.inputs.ramp.ramp_mapping", "api/pypath.inputs.ramp.ramp_raw", "api/pypath.inputs.ramp.ramp_show_tables", "api/pypath.inputs.rdata", "api/pypath.inputs.reaction", "api/pypath.inputs.reaction.acsn_biopax", "api/pypath.inputs.reaction.acsn_interactions_2", "api/pypath.inputs.reaction.get_acsn_effects", "api/pypath.inputs.reaction.get_controls", "api/pypath.inputs.reaction.get_interactions", "api/pypath.inputs.reaction.get_reactions", "api/pypath.inputs.reaction.get_soup", "api/pypath.inputs.reaction.panther_biopax", "api/pypath.inputs.reaction.panther_interactions", "api/pypath.inputs.reaction.pid_biopax", "api/pypath.inputs.reaction.pid_interactions", "api/pypath.inputs.reaction.process_complex", "api/pypath.inputs.reaction.process_controls", "api/pypath.inputs.reaction.process_reactions", "api/pypath.inputs.reaction.reactions_biopax", "api/pypath.inputs.reaction.reactome_biopax", "api/pypath.inputs.reaction.reactome_bs", "api/pypath.inputs.reaction.reactome_interactions", "api/pypath.inputs.reaction.reactome_sbml", "api/pypath.inputs.reactome", "api/pypath.inputs.reactome.reactome_chebis", "api/pypath.inputs.reactome.reactome_pathway_relations", "api/pypath.inputs.reactome.reactome_pathways", "api/pypath.inputs.reactome.reactome_uniprots", "api/pypath.inputs.scconnect", "api/pypath.inputs.scconnect.scconnect_annotations", "api/pypath.inputs.scconnect.scconnect_complexes", "api/pypath.inputs.scconnect.scconnect_interactions", "api/pypath.inputs.science", "api/pypath.inputs.science.science_download", "api/pypath.inputs.sider", "api/pypath.inputs.sider.SiderDrug", "api/pypath.inputs.sider.SiderSideeffect", "api/pypath.inputs.sider.SiderSideeffectMeddra", "api/pypath.inputs.sider.SiderSideeffetFrequency", "api/pypath.inputs.sider.sider_drug_names", "api/pypath.inputs.sider.sider_meddra_side_effects", "api/pypath.inputs.sider.sider_side_effect_frequencies", "api/pypath.inputs.sider.sider_side_effects", "api/pypath.inputs.signalink", "api/pypath.inputs.signalink.signalink_annotations", "api/pypath.inputs.signalink.signalink_function_annotations", "api/pypath.inputs.signalink.signalink_interactions", "api/pypath.inputs.signalink.signalink_pathway_annotations", "api/pypath.inputs.signor", "api/pypath.inputs.signor.signor_complexes", "api/pypath.inputs.signor.signor_enzyme_substrate", "api/pypath.inputs.signor.signor_interactions", "api/pypath.inputs.signor.signor_pathway_annotations", "api/pypath.inputs.signor.signor_pathways", "api/pypath.inputs.signor.signor_protein_families", "api/pypath.inputs.spike", "api/pypath.inputs.spike.spike_complexes", "api/pypath.inputs.spike.spike_interactions", "api/pypath.inputs.stitch", "api/pypath.inputs.stitch.stitch_actions_interactions", "api/pypath.inputs.stitch.stitch_links_interactions", "api/pypath.inputs.string", "api/pypath.inputs.string.string_effects", "api/pypath.inputs.string.string_links_interactions", "api/pypath.inputs.string.string_physical_interactions", "api/pypath.inputs.string.string_species", "api/pypath.inputs.surfaceome", "api/pypath.inputs.surfaceome.surfaceome_annotations", "api/pypath.inputs.switches_elm", "api/pypath.inputs.switches_elm.get_switches_elm", "api/pypath.inputs.talklr", "api/pypath.inputs.talklr.talklr_annotations", "api/pypath.inputs.talklr.talklr_interactions", "api/pypath.inputs.talklr.talklr_raw", "api/pypath.inputs.tcdb", "api/pypath.inputs.tcdb.tcdb_annotations", "api/pypath.inputs.tcdb.tcdb_classes", "api/pypath.inputs.tcdb.tcdb_families", "api/pypath.inputs.tfcensus", "api/pypath.inputs.tfcensus.tfcensus_annotations", "api/pypath.inputs.threedcomplex", "api/pypath.inputs.threedcomplex.threedcomplex_chains", "api/pypath.inputs.threedcomplex.threedcomplex_complexes", "api/pypath.inputs.threedcomplex.threedcomplex_contacts", "api/pypath.inputs.threedcomplex.threedcomplex_ddi", "api/pypath.inputs.threedcomplex.threedcomplex_nresidues", "api/pypath.inputs.threedid", "api/pypath.inputs.threedid.get_3did", "api/pypath.inputs.threedid.get_3did_ddi", "api/pypath.inputs.threedid.get_3did_dmi", "api/pypath.inputs.threedid.process_3did_dmi", "api/pypath.inputs.topdb", "api/pypath.inputs.topdb.topdb_annotations", "api/pypath.inputs.transmir", "api/pypath.inputs.transmir.transmir_interactions", "api/pypath.inputs.trip", "api/pypath.inputs.trip.take_a_trip", "api/pypath.inputs.trip.trip_find_uniprot", "api/pypath.inputs.trip.trip_get_uniprot", "api/pypath.inputs.trip.trip_interactions", "api/pypath.inputs.trip.trip_process", "api/pypath.inputs.trip.trip_process_table", "api/pypath.inputs.trrust", "api/pypath.inputs.trrust.trrust_human", "api/pypath.inputs.trrust.trrust_interactions", "api/pypath.inputs.trrust.trrust_mouse", "api/pypath.inputs.twosides", "api/pypath.inputs.twosides.twosides_interactions", "api/pypath.inputs.unichem", "api/pypath.inputs.unichem.info", "api/pypath.inputs.unichem.unichem_info", "api/pypath.inputs.unichem.unichem_mapping", "api/pypath.inputs.unichem.unichem_sources", "api/pypath.inputs.uniprot", "api/pypath.inputs.uniprot.Taxon", "api/pypath.inputs.uniprot.UniprotQuery", "api/pypath.inputs.uniprot.UniprotRecordHistory", "api/pypath.inputs.uniprot.deleted_uniprot_genesymbol", "api/pypath.inputs.uniprot.get_uniprot_sec", "api/pypath.inputs.uniprot.idmapping_idtypes", "api/pypath.inputs.uniprot.protein_datasheet", "api/pypath.inputs.uniprot.query_builder", "api/pypath.inputs.uniprot.swissprot_deleted", "api/pypath.inputs.uniprot.trembl_deleted", "api/pypath.inputs.uniprot.uniprot_data", "api/pypath.inputs.uniprot.uniprot_deleted", "api/pypath.inputs.uniprot.uniprot_families", "api/pypath.inputs.uniprot.uniprot_history", "api/pypath.inputs.uniprot.uniprot_history_recent_datasheet", "api/pypath.inputs.uniprot.uniprot_keywords", "api/pypath.inputs.uniprot.uniprot_locations", "api/pypath.inputs.uniprot.uniprot_ncbi_taxids", "api/pypath.inputs.uniprot.uniprot_ncbi_taxids_2", "api/pypath.inputs.uniprot.uniprot_preprocess", "api/pypath.inputs.uniprot.uniprot_query", "api/pypath.inputs.uniprot.uniprot_recent_version", "api/pypath.inputs.uniprot.uniprot_taxonomy", "api/pypath.inputs.uniprot.uniprot_tissues", "api/pypath.inputs.uniprot.uniprot_topology", "api/pypath.inputs.uniprot.valid_uniprot", "api/pypath.inputs.uniprot_db", "api/pypath.inputs.uniprot_db.all_swissprots", "api/pypath.inputs.uniprot_db.all_trembls", "api/pypath.inputs.uniprot_db.all_uniprots", "api/pypath.inputs.uniprot_db.get_db", "api/pypath.inputs.uniprot_db.init_db", "api/pypath.inputs.uniprot_db.is_swissprot", "api/pypath.inputs.uniprot_db.is_trembl", "api/pypath.inputs.uniprot_db.is_uniprot", "api/pypath.inputs.wang", "api/pypath.inputs.wang.cui_interactions", "api/pypath.inputs.wang.hsn_interactions", "api/pypath.inputs.wang.wang_annotations", "api/pypath.inputs.wang.wang_interactions", "api/pypath.inputs.wojtowicz2020", "api/pypath.inputs.wojtowicz2020.wojtowicz2020_interactions", "api/pypath.inputs.wojtowicz2020.wojtowicz2020_raw", "api/pypath.inputs.zhong2015", "api/pypath.inputs.zhong2015.zhong2015_annotations", "api/pypath.internals", "api/pypath.internals.annot_formats", "api/pypath.internals.annot_formats.AnnotDef", "api/pypath.internals.annot_formats.AnnotDefKey", "api/pypath.internals.annot_formats.AnnotOp", "api/pypath.internals.annot_formats.AnnotationGroup", "api/pypath.internals.input_formats", "api/pypath.internals.input_formats.ArrayMapping", "api/pypath.internals.input_formats.BiomartMapping", "api/pypath.internals.input_formats.FileMapping", "api/pypath.internals.input_formats.HmdbMapping", "api/pypath.internals.input_formats.MappingInput", "api/pypath.internals.input_formats.NetworkInput", "api/pypath.internals.input_formats.PickleMapping", "api/pypath.internals.input_formats.ProMapping", "api/pypath.internals.input_formats.RampMapping", "api/pypath.internals.input_formats.ReadList", "api/pypath.internals.input_formats.UnichemMapping", "api/pypath.internals.input_formats.UniprotListMapping", "api/pypath.internals.input_formats.UniprotMapping", "api/pypath.internals.intera", "api/pypath.internals.intera.Complex", "api/pypath.internals.intera.Domain", "api/pypath.internals.intera.DomainDomain", "api/pypath.internals.intera.DomainMotif", "api/pypath.internals.intera.Interface", "api/pypath.internals.intera.Motif", "api/pypath.internals.intera.Ptm", "api/pypath.internals.intera.Regulation", "api/pypath.internals.intera.Residue", "api/pypath.internals.license", "api/pypath.internals.license.License", "api/pypath.internals.license.LicenseAttrib", "api/pypath.internals.license.LicenseFeature", "api/pypath.internals.license.LicensePurpose", "api/pypath.internals.license.LicenseSharing", "api/pypath.internals.maps", "api/pypath.internals.refs", "api/pypath.internals.refs.Reference", "api/pypath.internals.refs.get_pubmed_data", "api/pypath.internals.resource", "api/pypath.internals.resource.AbstractResource", "api/pypath.internals.resource.EnzymeSubstrateResource", "api/pypath.internals.resource.EnzymeSubstrateResourceKey", "api/pypath.internals.resource.NetworkDataset", "api/pypath.internals.resource.NetworkResource", "api/pypath.internals.resource.NetworkResourceKey", "api/pypath.internals.resource.ResourceAttributes", "api/pypath.legacy", "api/pypath.legacy.db_categories", "api/pypath.legacy.db_categories.get_categories", "api/pypath.legacy.db_categories.get_category", "api/pypath.log", "api/pypath.resources", "api/pypath.resources.controller", "api/pypath.resources.controller.ResourceController", "api/pypath.resources.data", "api/pypath.resources.data_formats", "api/pypath.resources.data_formats.activity_flow", "api/pypath.resources.data_formats.enzyme_substrate", "api/pypath.resources.data_formats.interaction", "api/pypath.resources.data_formats.interaction_htp", "api/pypath.resources.data_formats.pathway_bad", "api/pypath.resources.data_formats.reaction_pc", "api/pypath.resources.data_formats.transcription_deprecated", "api/pypath.resources.data_formats.transcription_onebyone", "api/pypath.resources.get_controller", "api/pypath.resources.licenses", "api/pypath.resources.licenses.Licenses", "api/pypath.resources.network", "api/pypath.resources.network.choose_dataset", "api/pypath.resources.network.dataset_priority", "api/pypath.resources.network.dorothea_expand_levels", "api/pypath.resources.urls", "api/pypath.share", "api/pypath.share.cache", "api/pypath.share.cache.cache_item", "api/pypath.share.cache.cache_path", "api/pypath.share.cache.default_cachedir", "api/pypath.share.cache.get_cachedir", "api/pypath.share.common", "api/pypath.share.constants", "api/pypath.share.curl", "api/pypath.share.curl.Curl", "api/pypath.share.curl.FileOpener", "api/pypath.share.curl.RemoteFile", "api/pypath.share.curl.cache_delete_off", "api/pypath.share.curl.cache_delete_on", "api/pypath.share.curl.cache_off", "api/pypath.share.curl.cache_on", "api/pypath.share.curl.cache_print_off", "api/pypath.share.curl.cache_print_on", "api/pypath.share.curl.debug_off", "api/pypath.share.curl.debug_on", "api/pypath.share.curl.dryrun_off", "api/pypath.share.curl.dryrun_on", "api/pypath.share.curl.is_url", "api/pypath.share.curl.preserve_off", "api/pypath.share.curl.preserve_on", "api/pypath.share.progress", "api/pypath.share.progress.Progress", "api/pypath.share.session", "api/pypath.share.settings", "api/pypath.utils", "api/pypath.utils.go", "api/pypath.utils.go.GOAnnotation", "api/pypath.utils.go.GOCustomAnnotation", "api/pypath.utils.go.GeneOntology", "api/pypath.utils.go.annotate", "api/pypath.utils.go.get_db", "api/pypath.utils.go.init_db", "api/pypath.utils.go.load_go", "api/pypath.utils.mapping", "api/pypath.utils.mapping.MapReader", "api/pypath.utils.mapping.Mapper", "api/pypath.utils.mapping.MappingTable", "api/pypath.utils.mapping.MappingTableKey", "api/pypath.utils.mapping.UNIPROT_ID_TYPES", "api/pypath.utils.mapping.get_mapper", "api/pypath.utils.mapping.guess_type", "api/pypath.utils.mapping.id_from_label", "api/pypath.utils.mapping.id_from_label0", "api/pypath.utils.mapping.id_types", "api/pypath.utils.mapping.init", "api/pypath.utils.mapping.label", "api/pypath.utils.mapping.map_name", "api/pypath.utils.mapping.map_name0", "api/pypath.utils.mapping.map_names", "api/pypath.utils.mapping.mapping_tables", "api/pypath.utils.mapping.translation_df", "api/pypath.utils.mapping.translation_dict", "api/pypath.utils.metabo", "api/pypath.utils.orthology", "api/pypath.utils.orthology.EnsemblOrtholog", "api/pypath.utils.orthology.EnsemblOrthology", "api/pypath.utils.orthology.HomologeneOrtholog", "api/pypath.utils.orthology.HomologeneOrthology", "api/pypath.utils.orthology.OmaOrtholog", "api/pypath.utils.orthology.OmaOrthology", "api/pypath.utils.orthology.OrthologBase", "api/pypath.utils.orthology.OrthologMeta", "api/pypath.utils.orthology.OrthologyManager", "api/pypath.utils.orthology.OrthologyTableKey", "api/pypath.utils.orthology.ProteinOrthology", "api/pypath.utils.orthology.Proteomes", "api/pypath.utils.orthology.PtmOrthology", "api/pypath.utils.orthology.SequenceContainer", "api/pypath.utils.orthology.get_df", "api/pypath.utils.orthology.get_dict", "api/pypath.utils.orthology.get_manager", "api/pypath.utils.orthology.init", "api/pypath.utils.orthology.translate", "api/pypath.utils.orthology.translate_df", "api/pypath.utils.pdb", "api/pypath.utils.pdb.Residue", "api/pypath.utils.pdb.ResidueMapper", "api/pypath.utils.pdb.Segment", "api/pypath.utils.pdb.residue_pdb", "api/pypath.utils.proteomicsdb", "api/pypath.utils.proteomicsdb.ProteomicsDB", "api/pypath.utils.pyreact", "api/pypath.utils.pyreact.AttributeHandler", "api/pypath.utils.pyreact.BioPaxReader", "api/pypath.utils.pyreact.Complex", "api/pypath.utils.pyreact.ComplexVariations", "api/pypath.utils.pyreact.Control", "api/pypath.utils.pyreact.Entity", "api/pypath.utils.pyreact.EntitySet", "api/pypath.utils.pyreact.Intersecting", "api/pypath.utils.pyreact.Protein", "api/pypath.utils.pyreact.ProteinFamily", "api/pypath.utils.pyreact.PyReact", "api/pypath.utils.pyreact.Reaction", "api/pypath.utils.pyreact.ReactionSide", "api/pypath.utils.pyreact.Reference", "api/pypath.utils.reflists", "api/pypath.utils.reflists.ReferenceListManager", "api/pypath.utils.reflists.check", "api/pypath.utils.reflists.get_manager", "api/pypath.utils.reflists.get_reflist", "api/pypath.utils.reflists.init", "api/pypath.utils.reflists.is_not", "api/pypath.utils.reflists.select", "api/pypath.utils.residues", "api/pypath.utils.residues.ResidueMapper", "api/pypath.utils.seq", "api/pypath.utils.seq.Pfam", "api/pypath.utils.seq.Resource", "api/pypath.utils.seq.Seq", "api/pypath.utils.seq.get_isoforms", "api/pypath.utils.seq.read_fasta", "api/pypath.utils.seq.swissprot_seq", "api/pypath.utils.taxonomy", "api/pypath.utils.taxonomy.ensure_common_name", "api/pypath.utils.taxonomy.ensure_ensembl_name", "api/pypath.utils.taxonomy.ensure_latin_name", "api/pypath.utils.taxonomy.ensure_ncbi_tax_id", "api/pypath.utils.taxonomy.get_db", "api/pypath.utils.taxonomy.init_db", "api/pypath.utils.taxonomy.short_latin_names", "api/pypath.utils.taxonomy.shorten_latin_name", "api/pypath.utils.taxonomy.taxid_from_common_name", "api/pypath.utils.taxonomy.taxid_from_dbptm_taxon_name", "api/pypath.utils.taxonomy.taxid_from_ensembl_name", "api/pypath.utils.taxonomy.taxid_from_latin_name", "api/pypath.utils.taxonomy.taxid_from_nonstandard", "api/pypath.utils.taxonomy.uniprot_taxid", "api/pypath.utils.unichem", "api/pypath.utils.unichem.Unichem", "api/pypath.utils.uniprot", "api/pypath.utils.uniprot.UniprotProtein", "api/pypath.utils.uniprot.ac", "api/pypath.utils.uniprot.activity_regulation", "api/pypath.utils.uniprot.activity_regulation_with_xrefs", "api/pypath.utils.uniprot.alternative_products", "api/pypath.utils.uniprot.alternative_products_with_xrefs", "api/pypath.utils.uniprot.browse", "api/pypath.utils.uniprot.catalytic_activity", "api/pypath.utils.uniprot.catalytic_activity_with_xrefs", "api/pypath.utils.uniprot.collect", "api/pypath.utils.uniprot.databases", "api/pypath.utils.uniprot.disease", "api/pypath.utils.uniprot.disease_with_xrefs", "api/pypath.utils.uniprot.ec", "api/pypath.utils.uniprot.features_table", "api/pypath.utils.uniprot.full_name", "api/pypath.utils.uniprot.function", "api/pypath.utils.uniprot.function_genecards", "api/pypath.utils.uniprot.function_or_genecards", "api/pypath.utils.uniprot.function_with_genecards", "api/pypath.utils.uniprot.function_with_xrefs", "api/pypath.utils.uniprot.genesymbol", "api/pypath.utils.uniprot.has_tag", "api/pypath.utils.uniprot.id", "api/pypath.utils.uniprot.info", "api/pypath.utils.uniprot.info_section", "api/pypath.utils.uniprot.interaction", "api/pypath.utils.uniprot.interaction_with_xrefs", "api/pypath.utils.uniprot.is_reviewed", "api/pypath.utils.uniprot.itertag", "api/pypath.utils.uniprot.keywords", "api/pypath.utils.uniprot.keywords_with_xrefs", "api/pypath.utils.uniprot.length", "api/pypath.utils.uniprot.lengths", "api/pypath.utils.uniprot.load", "api/pypath.utils.uniprot.organism", "api/pypath.utils.uniprot.print_features", "api/pypath.utils.uniprot.ptm", "api/pypath.utils.uniprot.ptm_with_xrefs", "api/pypath.utils.uniprot.query", "api/pypath.utils.uniprot.reload", "api/pypath.utils.uniprot.remove_xrefs", "api/pypath.utils.uniprot.sequence", "api/pypath.utils.uniprot.sequence_caution", "api/pypath.utils.uniprot.sequence_caution_with_xrefs", "api/pypath.utils.uniprot.similarity", "api/pypath.utils.uniprot.similarity_with_xrefs", "api/pypath.utils.uniprot.subcellular_location", "api/pypath.utils.uniprot.subcellular_location_with_xrefs", "api/pypath.utils.uniprot.subunit", "api/pypath.utils.uniprot.subunit_with_xrefs", "api/pypath.utils.uniprot.tissue_specificity", "api/pypath.utils.uniprot.tissue_specificity_with_xrefs", "api/pypath.utils.uniprot.update_databases", "api/pypath.utils.uniprot.update_info", "api/pypath.utils.uniprot.web_resource", "api/pypath.utils.uniprot.web_resource_with_xrefs", "api/pypath.utils.uniprot.weight", "api/pypath.utils.uniprot.weights", "api/pypath.visual", "api/pypath.visual.drawing", "api/pypath.visual.drawing.InterSet", "api/pypath.visual.drawing.Plot", "api/pypath.visual.igraph_drawing", "api/pypath.visual.igraph_drawing.AbstractCairoGraphDrawer", "api/pypath.visual.igraph_drawing.ArrowEdgeDrawer", "api/pypath.visual.igraph_drawing.DefaultGraphDrawerFFsupport", "api/pypath.visual.igraph_drawing.DefaultVertexDrawer", "api/pypath.visual.igraph_drawing.TextDrawer", "api/pypath.visual.igraph_drawing.edge", "api/pypath.visual.igraph_drawing.edge.AbstractEdgeDrawer", "api/pypath.visual.igraph_drawing.edge.AlphaVaryingEdgeDrawer", "api/pypath.visual.igraph_drawing.edge.ArrowEdgeDrawer", "api/pypath.visual.igraph_drawing.edge.DarkToLightEdgeDrawer", "api/pypath.visual.igraph_drawing.edge.LightToDarkEdgeDrawer", "api/pypath.visual.igraph_drawing.edge.TaperedEdgeDrawer", "api/pypath.visual.igraph_drawing.vertex", "api/pypath.visual.igraph_drawing.vertex.AbstractCairoDrawer", "api/pypath.visual.igraph_drawing.vertex.AbstractCairoVertexDrawer", "api/pypath.visual.igraph_drawing.vertex.AbstractDrawer", "api/pypath.visual.igraph_drawing.vertex.AbstractVertexDrawer", "api/pypath.visual.igraph_drawing.vertex.DefaultVertexDrawer", "contents", "index", "notebooks/manual", "reference", "releasehistory", "webservice"], "filenames": ["api/pypath.rst", "api/pypath.core.rst", "api/pypath.core.annot.rst", "api/pypath.core.annot.Adhesome.rst", "api/pypath.core.annot.Almen2009.rst", "api/pypath.core.annot.AnnotationBase.rst", "api/pypath.core.annot.AnnotationTable.rst", "api/pypath.core.annot.Baccin2019.rst", "api/pypath.core.annot.Biogps.rst", "api/pypath.core.annot.CancerGeneCensus.rst", "api/pypath.core.annot.Cancerdrugsdb.rst", "api/pypath.core.annot.Cancersea.rst", "api/pypath.core.annot.CellPhoneDB.rst", "api/pypath.core.annot.CellPhoneDBComplex.rst", "api/pypath.core.annot.CellSurfaceProteinAtlas.rst", "api/pypath.core.annot.CellSurfaceProteinAtlasCellType.rst", "api/pypath.core.annot.Cellcall.rst", "api/pypath.core.annot.Cellcellinteractions.rst", "api/pypath.core.annot.Cellchatdb.rst", "api/pypath.core.annot.CellchatdbComplex.rst", "api/pypath.core.annot.Cellinker.rst", "api/pypath.core.annot.CellinkerComplex.rst", "api/pypath.core.annot.Celltalkdb.rst", "api/pypath.core.annot.Celltypist.rst", "api/pypath.core.annot.Comppi.rst", "api/pypath.core.annot.Connectomedb.rst", "api/pypath.core.annot.Corum.rst", "api/pypath.core.annot.CorumFuncat.rst", "api/pypath.core.annot.CorumGO.rst", "api/pypath.core.annot.Cpad.rst", "api/pypath.core.annot.CustomAnnotation.rst", "api/pypath.core.annot.Cytosig.rst", "api/pypath.core.annot.Dgidb.rst", "api/pypath.core.annot.Disgenet.rst", "api/pypath.core.annot.Embrace.rst", "api/pypath.core.annot.Exocarta.rst", "api/pypath.core.annot.GOCustomIntercell.rst", "api/pypath.core.annot.GOIntercell.rst", "api/pypath.core.annot.Gpcrdb.rst", "api/pypath.core.annot.GuideToPharmacology.rst", "api/pypath.core.annot.HPO.rst", "api/pypath.core.annot.Hgnc.rst", "api/pypath.core.annot.HpmrComplex.rst", "api/pypath.core.annot.HumanPlasmaMembraneReceptome.rst", "api/pypath.core.annot.HumanProteinAtlas.rst", "api/pypath.core.annot.HumanProteinAtlasSecretome.rst", "api/pypath.core.annot.HumanProteinAtlasSubcellular.rst", "api/pypath.core.annot.Humancellmap.rst", "api/pypath.core.annot.Icellnet.rst", "api/pypath.core.annot.IcellnetComplex.rst", "api/pypath.core.annot.Integrins.rst", "api/pypath.core.annot.InterPro.rst", "api/pypath.core.annot.Intogen.rst", "api/pypath.core.annot.Italk.rst", "api/pypath.core.annot.KeggPathways.rst", "api/pypath.core.annot.KeggPathwaysPC.rst", "api/pypath.core.annot.Kinasedotcom.rst", "api/pypath.core.annot.Kirouac2010.rst", "api/pypath.core.annot.Lambert2018.rst", "api/pypath.core.annot.LigandReceptor.rst", "api/pypath.core.annot.Locate.rst", "api/pypath.core.annot.Lrdb.rst", "api/pypath.core.annot.Matrisome.rst", "api/pypath.core.annot.Matrixdb.rst", "api/pypath.core.annot.Mcam.rst", "api/pypath.core.annot.Membranome.rst", "api/pypath.core.annot.Msigdb.rst", "api/pypath.core.annot.NetpathPathways.rst", "api/pypath.core.annot.Opm.rst", "api/pypath.core.annot.Panglaodb.rst", "api/pypath.core.annot.Phobius.rst", "api/pypath.core.annot.Phosphatome.rst", "api/pypath.core.annot.Progeny.rst", "api/pypath.core.annot.Ramilowski2015.rst", "api/pypath.core.annot.Ramilowski2015Location.rst", "api/pypath.core.annot.Scconnect.rst", "api/pypath.core.annot.ScconnectComplex.rst", "api/pypath.core.annot.SignalinkFunctions.rst", "api/pypath.core.annot.SignalinkPathways.rst", "api/pypath.core.annot.SignorPathways.rst", "api/pypath.core.annot.Surfaceome.rst", "api/pypath.core.annot.Talklr.rst", "api/pypath.core.annot.Tcdb.rst", "api/pypath.core.annot.Tfcensus.rst", "api/pypath.core.annot.Topdb.rst", "api/pypath.core.annot.UniprotFamilies.rst", "api/pypath.core.annot.UniprotKeywords.rst", "api/pypath.core.annot.UniprotLocations.rst", "api/pypath.core.annot.UniprotTissues.rst", "api/pypath.core.annot.UniprotTopologies.rst", "api/pypath.core.annot.Vesiclepedia.rst", "api/pypath.core.annot.Wang.rst", "api/pypath.core.annot.Zhong2015.rst", "api/pypath.core.annot.get_db.rst", "api/pypath.core.annot.init_db.rst", "api/pypath.core.attrs.rst", "api/pypath.core.attrs.AttributeHandler.rst", "api/pypath.core.common.rst", "api/pypath.core.common.filter_network_df.rst", "api/pypath.core.complex.rst", "api/pypath.core.complex.AbstractComplexResource.rst", "api/pypath.core.complex.CellPhoneDB.rst", "api/pypath.core.complex.Cellchatdb.rst", "api/pypath.core.complex.Cellinker.rst", "api/pypath.core.complex.Compleat.rst", "api/pypath.core.complex.ComplexAggregator.rst", "api/pypath.core.complex.ComplexPortal.rst", "api/pypath.core.complex.Corum.rst", "api/pypath.core.complex.GuideToPharmacology.rst", "api/pypath.core.complex.Havugimana.rst", "api/pypath.core.complex.Hpmr.rst", "api/pypath.core.complex.Humap.rst", "api/pypath.core.complex.Humap2.rst", "api/pypath.core.complex.Icellnet.rst", "api/pypath.core.complex.Kegg.rst", "api/pypath.core.complex.Pdb.rst", "api/pypath.core.complex.Signor.rst", "api/pypath.core.complex.Spike.rst", "api/pypath.core.complex.all_complexes.rst", "api/pypath.core.complex.get_db.rst", "api/pypath.core.complex.init_db.rst", "api/pypath.core.entity.rst", "api/pypath.core.entity.Entity.rst", "api/pypath.core.entity.EntityKey.rst", "api/pypath.core.entity.EntityList.rst", "api/pypath.core.enz_sub.rst", "api/pypath.core.enz_sub.EnzymeSubstrateAggregator.rst", "api/pypath.core.enz_sub.EnzymeSubstrateOrthologyProcessor.rst", "api/pypath.core.enz_sub.EnzymeSubstrateProcessor.rst", "api/pypath.core.enz_sub.get_db.rst", "api/pypath.core.enz_sub.init_db.rst", "api/pypath.core.evidence.rst", "api/pypath.core.evidence.Evidence.rst", "api/pypath.core.evidence.Evidences.rst", "api/pypath.core.interaction.rst", "api/pypath.core.interaction.Interaction.rst", "api/pypath.core.interaction.InteractionDataFrameRecord.rst", "api/pypath.core.interaction.InteractionKey.rst", "api/pypath.core.intercell.rst", "api/pypath.core.intercell.IntercellAnnotation.rst", "api/pypath.core.intercell.get_db.rst", "api/pypath.core.intercell.init_db.rst", "api/pypath.core.intercell_annot.rst", "api/pypath.core.intercell_annot.excludes.rst", "api/pypath.core.network.rst", "api/pypath.core.network.Network.rst", "api/pypath.core.network.NetworkEntityCollection.rst", "api/pypath.core.network.NetworkStatsRecord.rst", "api/pypath.core.network.get_db.rst", "api/pypath.core.network.init_db.rst", "api/pypath.data.rst", "api/pypath.disclaimer.rst", "api/pypath.info.rst", "api/pypath.inputs.rst", "api/pypath.inputs.abs.rst", "api/pypath.inputs.abs.abs_interactions.rst", "api/pypath.inputs.acsn.rst", "api/pypath.inputs.acsn.acsn_interactions.rst", "api/pypath.inputs.acsn.acsn_interactions_sif.rst", "api/pypath.inputs.adhesome.rst", "api/pypath.inputs.adhesome.adhesome_annotations.rst", "api/pypath.inputs.adhesome.adhesome_interactions.rst", "api/pypath.inputs.adrecs.rst", "api/pypath.inputs.adrecs.AdrecsAdr.rst", "api/pypath.inputs.adrecs.AdrecsChildParent.rst", "api/pypath.inputs.adrecs.AdrecsDrug.rst", "api/pypath.inputs.adrecs.AdrecsDrugAdr.rst", "api/pypath.inputs.adrecs.AdrecsTerm.rst", "api/pypath.inputs.adrecs.adrecs_adr_ontology.rst", "api/pypath.inputs.adrecs.adrecs_drug_adr.rst", "api/pypath.inputs.adrecs.adrecs_drug_identifiers.rst", "api/pypath.inputs.adrecs.adrecs_hierarchy.rst", "api/pypath.inputs.almen2009.rst", "api/pypath.inputs.almen2009.almen2009_annotations.rst", "api/pypath.inputs.baccin2019.rst", "api/pypath.inputs.baccin2019.baccin2019_annotations.rst", "api/pypath.inputs.baccin2019.baccin2019_interactions.rst", "api/pypath.inputs.biogps.rst", "api/pypath.inputs.biogps.BiogpsDataset.rst", "api/pypath.inputs.biogps.biogps_annotations.rst", "api/pypath.inputs.biogps.biogps_datasets.rst", "api/pypath.inputs.biogps.biogps_download.rst", "api/pypath.inputs.biogps.biogps_download_all.rst", "api/pypath.inputs.biogrid.rst", "api/pypath.inputs.biogrid.biogrid_all_interactions.rst", "api/pypath.inputs.biogrid.biogrid_interactions.rst", "api/pypath.inputs.biomart.rst", "api/pypath.inputs.biomart.biomart_homology.rst", "api/pypath.inputs.biomart.biomart_microarray.rst", "api/pypath.inputs.biomart.biomart_microarray_types.rst", "api/pypath.inputs.biomart.biomart_microarrays.rst", "api/pypath.inputs.biomart.biomart_query.rst", "api/pypath.inputs.biomodels.rst", "api/pypath.inputs.biomodels.download_single_model.rst", "api/pypath.inputs.biomodels.get_all_models.rst", "api/pypath.inputs.biomodels.get_biomodels.rst", "api/pypath.inputs.biomodels.get_biomodels_req.rst", "api/pypath.inputs.biomodels.get_single_model.rst", "api/pypath.inputs.ca1.rst", "api/pypath.inputs.ca1.ca1_interactions.rst", "api/pypath.inputs.cancercellmap.rst", "api/pypath.inputs.cancercellmap.ccmap_interactions.rst", "api/pypath.inputs.cancerdrugsdb.rst", "api/pypath.inputs.cancerdrugsdb.cancerdrugsdb_annotations.rst", "api/pypath.inputs.cancerdrugsdb.cancerdrugsdb_download.rst", "api/pypath.inputs.cancerdrugsdb.cancerdrugsdb_interactions.rst", "api/pypath.inputs.cancersea.rst", "api/pypath.inputs.cancersea.cancersea_annotations.rst", "api/pypath.inputs.cell.rst", "api/pypath.inputs.cell.cell_supplementary.rst", "api/pypath.inputs.cellcall.rst", "api/pypath.inputs.cellcall.cellcall_annotations.rst", "api/pypath.inputs.cellcall.cellcall_download.rst", "api/pypath.inputs.cellcall.cellcall_download_all.rst", "api/pypath.inputs.cellcall.cellcall_interactions.rst", "api/pypath.inputs.cellcellinteractions.rst", "api/pypath.inputs.cellcellinteractions.cellcellinteractions_annotations.rst", "api/pypath.inputs.cellchatdb.rst", "api/pypath.inputs.cellchatdb.cellchatdb_annotations.rst", "api/pypath.inputs.cellchatdb.cellchatdb_cofactors.rst", "api/pypath.inputs.cellchatdb.cellchatdb_complexes.rst", "api/pypath.inputs.cellchatdb.cellchatdb_download.rst", "api/pypath.inputs.cellchatdb.cellchatdb_interactions.rst", "api/pypath.inputs.cellinker.rst", "api/pypath.inputs.cellinker.CellinkerInteraction.rst", "api/pypath.inputs.cellinker.cellinker_annotations.rst", "api/pypath.inputs.cellinker.cellinker_complex_annotations.rst", "api/pypath.inputs.cellinker.cellinker_complexes.rst", "api/pypath.inputs.cellinker.cellinker_complexes_raw.rst", "api/pypath.inputs.cellinker.cellinker_lr_interactions.rst", "api/pypath.inputs.cellinker.cellinker_lr_interactions_raw.rst", "api/pypath.inputs.cellinker.cellinker_protein_annotations.rst", "api/pypath.inputs.cellinker.cellinker_smol_interactions.rst", "api/pypath.inputs.cellinker.cellinker_smol_interactions_raw.rst", "api/pypath.inputs.cellinker.components_to_complex.rst", "api/pypath.inputs.cellphonedb.rst", "api/pypath.inputs.cellphonedb.CellPhoneDBAnnotation.rst", "api/pypath.inputs.cellphonedb.cellphonedb_complex_annotations.rst", "api/pypath.inputs.cellphonedb.cellphonedb_complexes.rst", "api/pypath.inputs.cellphonedb.cellphonedb_interactions.rst", "api/pypath.inputs.cellphonedb.cellphonedb_ligands_receptors.rst", "api/pypath.inputs.cellphonedb.cellphonedb_protein_annotations.rst", "api/pypath.inputs.celltalkdb.rst", "api/pypath.inputs.celltalkdb.celltalkdb_annotations.rst", "api/pypath.inputs.celltalkdb.celltalkdb_download.rst", "api/pypath.inputs.celltalkdb.celltalkdb_interactions.rst", "api/pypath.inputs.celltypist.rst", "api/pypath.inputs.celltypist.celltypist_annotations.rst", "api/pypath.inputs.chembl.rst", "api/pypath.inputs.chembl.chembl_activities.rst", "api/pypath.inputs.chembl.chembl_assays.rst", "api/pypath.inputs.chembl.chembl_documents.rst", "api/pypath.inputs.chembl.chembl_drug_indications.rst", "api/pypath.inputs.chembl.chembl_mechanisms.rst", "api/pypath.inputs.chembl.chembl_molecules.rst", "api/pypath.inputs.chembl.chembl_targets.rst", "api/pypath.inputs.clinvar.rst", "api/pypath.inputs.clinvar.clinvar_citations.rst", "api/pypath.inputs.clinvar.clinvar_raw.rst", "api/pypath.inputs.collectri.rst", "api/pypath.inputs.collectri.collectri_interactions.rst", "api/pypath.inputs.collectri.collectri_raw.rst", "api/pypath.inputs.common.rst", "api/pypath.inputs.common.csv_sep_change.rst", "api/pypath.inputs.common.glom_fields.rst", "api/pypath.inputs.common.json_extract.rst", "api/pypath.inputs.common.json_read.rst", "api/pypath.inputs.common.read_table.rst", "api/pypath.inputs.common.read_xls.rst", "api/pypath.inputs.compath.rst", "api/pypath.inputs.compath.compath_mappings.rst", "api/pypath.inputs.compleat.rst", "api/pypath.inputs.compleat.compleat_complexes.rst", "api/pypath.inputs.compleat.compleat_raw.rst", "api/pypath.inputs.complexportal.rst", "api/pypath.inputs.complexportal.complexportal_complexes.rst", "api/pypath.inputs.comppi.rst", "api/pypath.inputs.comppi.comppi_interaction_locations.rst", "api/pypath.inputs.comppi.comppi_locations.rst", "api/pypath.inputs.connectomedb.rst", "api/pypath.inputs.connectomedb.connectomedb_annotations.rst", "api/pypath.inputs.connectomedb.connectomedb_interactions.rst", "api/pypath.inputs.corum.rst", "api/pypath.inputs.corum.corum_complexes.rst", "api/pypath.inputs.cosmic.rst", "api/pypath.inputs.cosmic.cancer_gene_census_annotations.rst", "api/pypath.inputs.cpad.rst", "api/pypath.inputs.cpad.cpad_annotations.rst", "api/pypath.inputs.cpad.cpad_pathway_cancer.rst", "api/pypath.inputs.cpad.get_cpad.rst", "api/pypath.inputs.cpdb.rst", "api/pypath.inputs.cpdb.cpdb_interactions.rst", "api/pypath.inputs.cpdb.cpdb_interactions_ltp.rst", "api/pypath.inputs.credentials.rst", "api/pypath.inputs.credentials.credentials.rst", "api/pypath.inputs.csa.rst", "api/pypath.inputs.csa.get_csa.rst", "api/pypath.inputs.cspa.rst", "api/pypath.inputs.cspa.cspa_annotations.rst", "api/pypath.inputs.cspa.cspa_cell_type_annotations.rst", "api/pypath.inputs.cspa.cspa_cell_types.rst", "api/pypath.inputs.ctdbase.rst", "api/pypath.inputs.ctdbase.ctdbase_relations.rst", "api/pypath.inputs.ctdbase.ctdbase_vocabulary.rst", "api/pypath.inputs.cytosig.rst", "api/pypath.inputs.cytosig.cytosig_annotations.rst", "api/pypath.inputs.cytosig.cytosig_df.rst", "api/pypath.inputs.dbptm.rst", "api/pypath.inputs.dbptm.dbptm_enzyme_substrate.rst", "api/pypath.inputs.dbptm.dbptm_enzyme_substrate_old.rst", "api/pypath.inputs.dbptm.dbptm_interactions.rst", "api/pypath.inputs.ddinter.rst", "api/pypath.inputs.ddinter.ddinter_drug_interactions.rst", "api/pypath.inputs.ddinter.ddinter_identifiers.rst", "api/pypath.inputs.ddinter.ddinter_interactions.rst", "api/pypath.inputs.ddinter.ddinter_mappings.rst", "api/pypath.inputs.ddinter.ddinter_n_drugs.rst", "api/pypath.inputs.deathdomain.rst", "api/pypath.inputs.deathdomain.deathdomain_interactions.rst", "api/pypath.inputs.deathdomain.deathdomain_interactions_rescued.rst", "api/pypath.inputs.depod.rst", "api/pypath.inputs.depod.depod_enzyme_substrate.rst", "api/pypath.inputs.depod.depod_interactions.rst", "api/pypath.inputs.dgidb.rst", "api/pypath.inputs.dgidb.dgidb_annotations.rst", "api/pypath.inputs.dgidb.dgidb_interactions.rst", "api/pypath.inputs.dgidb.get_dgidb_old.rst", "api/pypath.inputs.dip.rst", "api/pypath.inputs.dip.dip_interactions.rst", "api/pypath.inputs.dip.dip_login.rst", "api/pypath.inputs.diseases.rst", "api/pypath.inputs.diseases.diseases_general.rst", "api/pypath.inputs.diseases.experiments_filtered.rst", "api/pypath.inputs.diseases.experiments_full.rst", "api/pypath.inputs.diseases.knowledge_filtered.rst", "api/pypath.inputs.diseases.knowledge_full.rst", "api/pypath.inputs.diseases.textmining_filtered.rst", "api/pypath.inputs.diseases.textmining_full.rst", "api/pypath.inputs.domino.rst", "api/pypath.inputs.domino.domino_ddi.rst", "api/pypath.inputs.domino.domino_enzsub.rst", "api/pypath.inputs.domino.domino_interactions.rst", "api/pypath.inputs.domino.get_domino.rst", "api/pypath.inputs.dorothea.rst", "api/pypath.inputs.dorothea.DorotheaInteraction.rst", "api/pypath.inputs.dorothea.dorothea_full_raw.rst", "api/pypath.inputs.dorothea.dorothea_interactions.rst", "api/pypath.inputs.dorothea.dorothea_interactions_old.rst", "api/pypath.inputs.dorothea.dorothea_old_csv.rst", "api/pypath.inputs.dorothea.dorothea_rda_raw.rst", "api/pypath.inputs.dorothea.get_dorothea_old.rst", "api/pypath.inputs.dorothea.get_tfregulons.rst", "api/pypath.inputs.dorothea.tfregulons_interactions.rst", "api/pypath.inputs.dorothea.tfregulons_interactions_old.rst", "api/pypath.inputs.drugbank.rst", "api/pypath.inputs.drugbank.DrugbankFull.rst", "api/pypath.inputs.drugbank.drugbank_annotations.rst", "api/pypath.inputs.drugbank.drugbank_drugs.rst", "api/pypath.inputs.drugbank.drugbank_interactions.rst", "api/pypath.inputs.drugbank.drugbank_mapping.rst", "api/pypath.inputs.drugbank.drugbank_raw_interactions.rst", "api/pypath.inputs.drugcentral.rst", "api/pypath.inputs.drugcentral.drugcentral_drugs.rst", "api/pypath.inputs.drugcentral.drugcentral_interactions.rst", "api/pypath.inputs.drugcentral.drugcentral_mapping.rst", "api/pypath.inputs.ebi.rst", "api/pypath.inputs.ebi.ebi_rest.rst", "api/pypath.inputs.elm.rst", "api/pypath.inputs.elm.elm_classes.rst", "api/pypath.inputs.elm.elm_domains.rst", "api/pypath.inputs.elm.elm_instances.rst", "api/pypath.inputs.elm.elm_interactions.rst", "api/pypath.inputs.embopress.rst", "api/pypath.inputs.embopress.embopress_supplementary.rst", "api/pypath.inputs.embrace.rst", "api/pypath.inputs.embrace.embrace_annotations.rst", "api/pypath.inputs.embrace.embrace_interactions.rst", "api/pypath.inputs.embrace.embrace_raw.rst", "api/pypath.inputs.embrace.embrace_translated.rst", "api/pypath.inputs.encode.rst", "api/pypath.inputs.encode.encode_tf_mirna_interactions.rst", "api/pypath.inputs.ensembl.rst", "api/pypath.inputs.ensembl.ensembl_organisms.rst", "api/pypath.inputs.eutils.rst", "api/pypath.inputs.eutils.esummary.rst", "api/pypath.inputs.exocarta.rst", "api/pypath.inputs.exocarta.get_exocarta.rst", "api/pypath.inputs.exocarta.get_vesiclepedia.rst", "api/pypath.inputs.expasy.rst", "api/pypath.inputs.expasy.expasy_enzyme_classes.rst", "api/pypath.inputs.expasy.expasy_enzymes.rst", "api/pypath.inputs.genecards.rst", "api/pypath.inputs.genecards.genecards_datasheet.rst", "api/pypath.inputs.genecards.genecards_soup.rst", "api/pypath.inputs.genecards.genecards_summaries.rst", "api/pypath.inputs.get_method.rst", "api/pypath.inputs.go.rst", "api/pypath.inputs.go.get_go_desc.rst", "api/pypath.inputs.go.get_go_quick.rst", "api/pypath.inputs.go.get_goslim.rst", "api/pypath.inputs.go.go_ancestors.rst", "api/pypath.inputs.go.go_ancestors_goose.rst", "api/pypath.inputs.go.go_ancestors_quickgo.rst", "api/pypath.inputs.go.go_annotations.rst", "api/pypath.inputs.go.go_annotations_all.rst", "api/pypath.inputs.go.go_annotations_goa.rst", "api/pypath.inputs.go.go_annotations_goose.rst", "api/pypath.inputs.go.go_annotations_quickgo.rst", "api/pypath.inputs.go.go_annotations_solr.rst", "api/pypath.inputs.go.go_annotations_uniprot.rst", "api/pypath.inputs.go.go_descendants.rst", "api/pypath.inputs.go.go_descendants_goose.rst", "api/pypath.inputs.go.go_descendants_quickgo.rst", "api/pypath.inputs.go.go_descendants_to_ancestors.rst", "api/pypath.inputs.go.go_terms.rst", "api/pypath.inputs.go.go_terms_goose.rst", "api/pypath.inputs.go.go_terms_quickgo.rst", "api/pypath.inputs.go.go_terms_solr.rst", "api/pypath.inputs.gpcrdb.rst", "api/pypath.inputs.gpcrdb.gpcrdb_annotations.rst", "api/pypath.inputs.graphviz.rst", "api/pypath.inputs.graphviz.graphviz_attrs.rst", "api/pypath.inputs.guide2pharma.rst", "api/pypath.inputs.guide2pharma.guide2pharma_complexes.rst", "api/pypath.inputs.guide2pharma.guide2pharma_download.rst", "api/pypath.inputs.guide2pharma.guide2pharma_interactions.rst", "api/pypath.inputs.gutmgene.rst", "api/pypath.inputs.gutmgene.GutmgeneAnnotation.rst", "api/pypath.inputs.gutmgene.GutmgeneRaw.rst", "api/pypath.inputs.gutmgene.gutmgene_annotations.rst", "api/pypath.inputs.gutmgene.gutmgene_raw.rst", "api/pypath.inputs.havugimana.rst", "api/pypath.inputs.havugimana.get_havugimana.rst", "api/pypath.inputs.havugimana.havugimana_complexes.rst", "api/pypath.inputs.hgnc.rst", "api/pypath.inputs.hgnc.hgnc_genegroups.rst", "api/pypath.inputs.hippie.rst", "api/pypath.inputs.hippie.hippie_interactions.rst", "api/pypath.inputs.hmdb.rst", "api/pypath.inputs.hmdb.common.rst", "api/pypath.inputs.hmdb.common.iter.rst", "api/pypath.inputs.hmdb.common.mapping.rst", "api/pypath.inputs.hmdb.common.raw.rst", "api/pypath.inputs.hmdb.common.table.rst", "api/pypath.inputs.hmdb.metabolites.rst", "api/pypath.inputs.hmdb.metabolites.iter.rst", "api/pypath.inputs.hmdb.metabolites.mapping.rst", "api/pypath.inputs.hmdb.metabolites.raw.rst", "api/pypath.inputs.hmdb.metabolites.table.rst", "api/pypath.inputs.hmdb.proteins.rst", "api/pypath.inputs.hmdb.proteins.iter.rst", "api/pypath.inputs.hmdb.proteins.mapping.rst", "api/pypath.inputs.hmdb.proteins.raw.rst", "api/pypath.inputs.hmdb.proteins.table.rst", "api/pypath.inputs.hmdb.schema.rst", "api/pypath.inputs.hmdb.schema.common.rst", "api/pypath.inputs.hmdb.schema.common.Field.rst", "api/pypath.inputs.hmdb.schema.metabolites.rst", "api/pypath.inputs.hmdb.schema.proteins.rst", "api/pypath.inputs.hmdb.structures.rst", "api/pypath.inputs.hmdb.structures.sdf.rst", "api/pypath.inputs.hmdb.visual.rst", "api/pypath.inputs.hmdb.visual.show_structure.rst", "api/pypath.inputs.hmdb.visual.structure_svg.rst", "api/pypath.inputs.hmdb.xml.rst", "api/pypath.inputs.hmdb.xml.hmdb_xml.rst", "api/pypath.inputs.homologene.rst", "api/pypath.inputs.homologene.get_homologene.rst", "api/pypath.inputs.homologene.homologene_dict.rst", "api/pypath.inputs.homologene.homologene_uniprot_dict.rst", "api/pypath.inputs.hpmr.rst", "api/pypath.inputs.hpmr.HpmrInteraction.rst", "api/pypath.inputs.hpmr.get_hpmr.rst", "api/pypath.inputs.hpmr.hpmr_annotations.rst", "api/pypath.inputs.hpmr.hpmr_complexes.rst", "api/pypath.inputs.hpmr.hpmr_interactions.rst", "api/pypath.inputs.hpo.rst", "api/pypath.inputs.hpo.hpo_annotations.rst", "api/pypath.inputs.hpo.hpo_diseases.rst", "api/pypath.inputs.hpo.hpo_ontology.rst", "api/pypath.inputs.hpo.hpo_terms.rst", "api/pypath.inputs.hprd.rst", "api/pypath.inputs.hprd.get_hprd.rst", "api/pypath.inputs.hprd.hprd_enzyme_substrate.rst", "api/pypath.inputs.hprd.hprd_interactions.rst", "api/pypath.inputs.hprd.hprd_interactions_htp.rst", "api/pypath.inputs.htri.rst", "api/pypath.inputs.htri.htri_interactions.rst", "api/pypath.inputs.humancellmap.rst", "api/pypath.inputs.humancellmap.humancellmap_annotations.rst", "api/pypath.inputs.humap.rst", "api/pypath.inputs.humap.humap2_complexes.rst", "api/pypath.inputs.humap.humap_complexes.rst", "api/pypath.inputs.humsavar.rst", "api/pypath.inputs.humsavar.uniprot_variants.rst", "api/pypath.inputs.huri.rst", "api/pypath.inputs.huri.hi_i_interactions.rst", "api/pypath.inputs.huri.hi_ii_interactions.rst", "api/pypath.inputs.huri.hi_iii_old.rst", "api/pypath.inputs.huri.hi_union_interactions.rst", "api/pypath.inputs.huri.huri_interactions.rst", "api/pypath.inputs.huri.lit_bm_13_interactions.rst", "api/pypath.inputs.huri.lit_bm_17_interactions.rst", "api/pypath.inputs.huri.lit_bm_interactions.rst", "api/pypath.inputs.huri.rolland_hi_ii_14.rst", "api/pypath.inputs.huri.vidal_hi_iii_old.rst", "api/pypath.inputs.huri.yang2016_interactions.rst", "api/pypath.inputs.huri.yu2011_interactions.rst", "api/pypath.inputs.i3d.rst", "api/pypath.inputs.i3d.get_i3d.rst", "api/pypath.inputs.icellnet.rst", "api/pypath.inputs.icellnet.IcellnetRecord.rst", "api/pypath.inputs.icellnet.icellnet_annotations.rst", "api/pypath.inputs.icellnet.icellnet_complexes.rst", "api/pypath.inputs.icellnet.icellnet_interactions.rst", "api/pypath.inputs.ielm.rst", "api/pypath.inputs.ielm.get_ielm.rst", "api/pypath.inputs.ielm.get_ielm_huge.rst", "api/pypath.inputs.imweb.rst", "api/pypath.inputs.imweb.get_imweb.rst", "api/pypath.inputs.imweb.get_imweb_req.rst", "api/pypath.inputs.innatedb.rst", "api/pypath.inputs.innatedb.innatedb_interactions.rst", "api/pypath.inputs.instruct.rst", "api/pypath.inputs.instruct.get_instruct.rst", "api/pypath.inputs.instruct.get_instruct_offsets.rst", "api/pypath.inputs.intact.rst", "api/pypath.inputs.intact.intact_interactions.rst", "api/pypath.inputs.integrins.rst", "api/pypath.inputs.integrins.get_integrins.rst", "api/pypath.inputs.interpro.rst", "api/pypath.inputs.interpro.interpro2go_annotations.rst", "api/pypath.inputs.interpro.interpro_annotations.rst", "api/pypath.inputs.interpro.interpro_entries.rst", "api/pypath.inputs.interpro.interpro_xrefs.rst", "api/pypath.inputs.intogen.rst", "api/pypath.inputs.intogen.intogen_annotations.rst", "api/pypath.inputs.ipi.rst", "api/pypath.inputs.ipi.ipi_uniprot.rst", "api/pypath.inputs.iptmnet.rst", "api/pypath.inputs.iptmnet.IptmnetInteraction.rst", "api/pypath.inputs.iptmnet.iptmnet_interactions.rst", "api/pypath.inputs.italk.rst", "api/pypath.inputs.italk.italk_annotations.rst", "api/pypath.inputs.italk.italk_interactions.rst", "api/pypath.inputs.italk.italk_raw.rst", "api/pypath.inputs.kea.rst", "api/pypath.inputs.kea.kea_enzyme_substrate.rst", "api/pypath.inputs.kea.kea_interactions.rst", "api/pypath.inputs.kegg.rst", "api/pypath.inputs.kegg.KeggPathway.rst", "api/pypath.inputs.kegg.kegg_dbget.rst", "api/pypath.inputs.kegg.kegg_interactions.rst", "api/pypath.inputs.kegg.kegg_medicus.rst", "api/pypath.inputs.kegg.kegg_medicus_complexes.rst", "api/pypath.inputs.kegg.kegg_medicus_interactions.rst", "api/pypath.inputs.kegg.kegg_pathway_annotations.rst", "api/pypath.inputs.kegg.kegg_pathway_annotations_pathwaycommons.rst", "api/pypath.inputs.kegg.kegg_pathways.rst", "api/pypath.inputs.kegg_api.rst", "api/pypath.inputs.kegg_api.disease_to_drug.rst", "api/pypath.inputs.kegg_api.disease_to_gene.rst", "api/pypath.inputs.kegg_api.disease_to_pathway.rst", "api/pypath.inputs.kegg_api.drug_to_disease.rst", "api/pypath.inputs.kegg_api.drug_to_drug.rst", "api/pypath.inputs.kegg_api.drug_to_gene.rst", "api/pypath.inputs.kegg_api.drug_to_pathway.rst", "api/pypath.inputs.kegg_api.gene_to_disease.rst", "api/pypath.inputs.kegg_api.gene_to_drug.rst", "api/pypath.inputs.kegg_api.gene_to_pathway.rst", "api/pypath.inputs.kegg_api.kegg_drug_to_chebi.rst", "api/pypath.inputs.kegg_api.kegg_gene_to_ncbi_geneid.rst", "api/pypath.inputs.kegg_api.kegg_gene_to_uniprot.rst", "api/pypath.inputs.kegg_api.pathway_to_disease.rst", "api/pypath.inputs.kegg_api.pathway_to_drug.rst", "api/pypath.inputs.kegg_api.pathway_to_gene.rst", "api/pypath.inputs.kinasedotcom.rst", "api/pypath.inputs.kinasedotcom.kinasedotcom_annotations.rst", "api/pypath.inputs.kirouac2010.rst", "api/pypath.inputs.kirouac2010.kirouac2010_interactions.rst", "api/pypath.inputs.lambert2018.rst", "api/pypath.inputs.lambert2018.lambert2018_annotations.rst", "api/pypath.inputs.lambert2018.lambert2018_s1_raw.rst", "api/pypath.inputs.laudanna.rst", "api/pypath.inputs.laudanna.laudanna_directions.rst", "api/pypath.inputs.laudanna.laudanna_effects.rst", "api/pypath.inputs.li2012.rst", "api/pypath.inputs.li2012.get_li2012.rst", "api/pypath.inputs.li2012.li2012_dmi.rst", "api/pypath.inputs.li2012.li2012_enzyme_substrate.rst", "api/pypath.inputs.li2012.li2012_interactions.rst", "api/pypath.inputs.lincs.rst", "api/pypath.inputs.lincs.lincs_compounds.rst", "api/pypath.inputs.lmpid.rst", "api/pypath.inputs.lmpid.lmpid_dmi.rst", "api/pypath.inputs.lmpid.lmpid_interactions.rst", "api/pypath.inputs.lmpid.load_lmpid.rst", "api/pypath.inputs.lncdisease.rst", "api/pypath.inputs.lncdisease.lncdisease_interactions.rst", "api/pypath.inputs.lncrnadb.rst", "api/pypath.inputs.lncrnadb.lncrnadb_interactions.rst", "api/pypath.inputs.locate.rst", "api/pypath.inputs.locate.locate_localizations.rst", "api/pypath.inputs.lrdb.rst", "api/pypath.inputs.lrdb.LrdbAnnotation.rst", "api/pypath.inputs.lrdb.lrdb_annotations.rst", "api/pypath.inputs.lrdb.lrdb_interactions.rst", "api/pypath.inputs.macrophage.rst", "api/pypath.inputs.macrophage.macrophage_interactions.rst", "api/pypath.inputs.main.rst", "api/pypath.inputs.matrisome.rst", "api/pypath.inputs.matrisome.matrisome_annotations.rst", "api/pypath.inputs.matrixdb.rst", "api/pypath.inputs.matrixdb.matrixdb_annotations.rst", "api/pypath.inputs.matrixdb.matrixdb_ecm_proteins.rst", "api/pypath.inputs.matrixdb.matrixdb_interactions.rst", "api/pypath.inputs.matrixdb.matrixdb_membrane_proteins.rst", "api/pypath.inputs.matrixdb.matrixdb_secreted_proteins.rst", "api/pypath.inputs.mcam.rst", "api/pypath.inputs.mcam.mcam_cell_adhesion_molecules.rst", "api/pypath.inputs.membranome.rst", "api/pypath.inputs.membranome.membranome_annotations.rst", "api/pypath.inputs.mimp.rst", "api/pypath.inputs.mimp.get_kinase_class.rst", "api/pypath.inputs.mimp.mimp_enzyme_substrate.rst", "api/pypath.inputs.mimp.mimp_interactions.rst", "api/pypath.inputs.mir2disease.rst", "api/pypath.inputs.mir2disease.mir2disease_interactions.rst", "api/pypath.inputs.mirbase.rst", "api/pypath.inputs.mirbase.get_mirbase_aliases.rst", "api/pypath.inputs.mirbase.mirbase_ids.rst", "api/pypath.inputs.mirbase.mirbase_mature.rst", "api/pypath.inputs.mirbase.mirbase_mature_all.rst", "api/pypath.inputs.mirbase.mirbase_precursor.rst", "api/pypath.inputs.mirbase.mirbase_precursor_all.rst", "api/pypath.inputs.mirbase.mirbase_precursor_to_mature.rst", "api/pypath.inputs.mirdeathdb.rst", "api/pypath.inputs.mirdeathdb.mirdeathdb_interactions.rst", "api/pypath.inputs.mirecords.rst", "api/pypath.inputs.mirecords.mirecords_interactions.rst", "api/pypath.inputs.mirtarbase.rst", "api/pypath.inputs.mirtarbase.mirtarbase_interactions.rst", "api/pypath.inputs.mitab.rst", "api/pypath.inputs.mitab.mitab_field_list.rst", "api/pypath.inputs.mitab.mitab_field_uniprot.rst", "api/pypath.inputs.mppi.rst", "api/pypath.inputs.mppi.mppi_interactions.rst", "api/pypath.inputs.msigdb.rst", "api/pypath.inputs.msigdb.msigdb_annotations.rst", "api/pypath.inputs.msigdb.msigdb_download.rst", "api/pypath.inputs.msigdb.msigdb_download_collections.rst", "api/pypath.inputs.ncrdeathdb.rst", "api/pypath.inputs.ncrdeathdb.ncrdeathdb_interactions.rst", "api/pypath.inputs.negatome.rst", "api/pypath.inputs.negatome.negatome_interactions.rst", "api/pypath.inputs.netbiol.rst", "api/pypath.inputs.netbiol.arn_interactions.rst", "api/pypath.inputs.netbiol.nrf2ome_interactions.rst", "api/pypath.inputs.netpath.rst", "api/pypath.inputs.netpath.netpath_interactions.rst", "api/pypath.inputs.netpath.netpath_names.rst", "api/pypath.inputs.netpath.netpath_pathway_annotations.rst", "api/pypath.inputs.offsides.rst", "api/pypath.inputs.offsides.offsides_side_effects.rst", "api/pypath.inputs.oma.rst", "api/pypath.inputs.oma.oma_orthologs.rst", "api/pypath.inputs.oma.oma_table.rst", "api/pypath.inputs.ontology.rst", "api/pypath.inputs.ontology.listof_ontologies.rst", "api/pypath.inputs.ontology.ontology.rst", "api/pypath.inputs.opentargets.rst", "api/pypath.inputs.opentargets.opentargets_adverse_reactions.rst", "api/pypath.inputs.opentargets.opentargets_baseline_expression.rst", "api/pypath.inputs.opentargets.opentargets_direct_score.rst", "api/pypath.inputs.opentargets.opentargets_general.rst", "api/pypath.inputs.opentargets.opentargets_indirect_score.rst", "api/pypath.inputs.opm.rst", "api/pypath.inputs.opm.opm_annotations.rst", "api/pypath.inputs.oreganno.rst", "api/pypath.inputs.oreganno.oreganno_interactions.rst", "api/pypath.inputs.oreganno.oreganno_raw.rst", "api/pypath.inputs.panglaodb.rst", "api/pypath.inputs.panglaodb.panglaodb_annotations.rst", "api/pypath.inputs.panglaodb.panglaodb_raw.rst", "api/pypath.inputs.pathophenodb.rst", "api/pypath.inputs.pathophenodb.DiseasePathogen.rst", "api/pypath.inputs.pathophenodb.disease_pathogen_interactions.rst", "api/pypath.inputs.pathwaycommons.rst", "api/pypath.inputs.pathwaycommons.PathwayCommonsInteraction.rst", "api/pypath.inputs.pathwaycommons.PathwayCommonsResource.rst", "api/pypath.inputs.pathwaycommons.pathwaycommons_bind_interactions.rst", "api/pypath.inputs.pathwaycommons.pathwaycommons_biogrid_interactions.rst", "api/pypath.inputs.pathwaycommons.pathwaycommons_corum_interactions.rst", "api/pypath.inputs.pathwaycommons.pathwaycommons_dip_interactions.rst", "api/pypath.inputs.pathwaycommons.pathwaycommons_hprd_interactions.rst", "api/pypath.inputs.pathwaycommons.pathwaycommons_inoh_interactions.rst", "api/pypath.inputs.pathwaycommons.pathwaycommons_intact_interactions.rst", "api/pypath.inputs.pathwaycommons.pathwaycommons_interactions.rst", "api/pypath.inputs.pathwaycommons.pathwaycommons_kegg_interactions.rst", "api/pypath.inputs.pathwaycommons.pathwaycommons_netpath_interactions.rst", "api/pypath.inputs.pathwaycommons.pathwaycommons_panther_interactions.rst", "api/pypath.inputs.pathwaycommons.pathwaycommons_phosphosite_interactions.rst", "api/pypath.inputs.pathwaycommons.pathwaycommons_reactome_interactions.rst", "api/pypath.inputs.pathwaycommons.pathwaycommons_wikipathways_interactions.rst", "api/pypath.inputs.pazar.rst", "api/pypath.inputs.pazar.pazar_interactions.rst", "api/pypath.inputs.pdb.rst", "api/pypath.inputs.pdb.pdb_chains.rst", "api/pypath.inputs.pdb.pdb_complexes.rst", "api/pypath.inputs.pdb.pdb_uniprot.rst", "api/pypath.inputs.pdzbase.rst", "api/pypath.inputs.pdzbase.pdzbase_interactions.rst", "api/pypath.inputs.pepcyber.rst", "api/pypath.inputs.pepcyber.pepcyber_details.rst", "api/pypath.inputs.pepcyber.pepcyber_interactions.rst", "api/pypath.inputs.pfam.rst", "api/pypath.inputs.pfam.pfam_names.rst", "api/pypath.inputs.pfam.pfam_pdb.rst", "api/pypath.inputs.pfam.pfam_regions.rst", "api/pypath.inputs.pfam.pfam_uniprot.rst", "api/pypath.inputs.pharos.rst", "api/pypath.inputs.pharos.pharos_diseases.rst", "api/pypath.inputs.pharos.pharos_expression.rst", "api/pypath.inputs.pharos.pharos_general.rst", "api/pypath.inputs.pharos.pharos_gtex.rst", "api/pypath.inputs.pharos.pharos_ligands.rst", "api/pypath.inputs.pharos.pharos_orthologs.rst", "api/pypath.inputs.pharos.pharos_targets.rst", "api/pypath.inputs.pharos.pharos_xrefs.rst", "api/pypath.inputs.phobius.rst", "api/pypath.inputs.phobius.phobius_annotations.rst", "api/pypath.inputs.phosphatome.rst", "api/pypath.inputs.phosphatome.phosphatome_annotations.rst", "api/pypath.inputs.phosphoelm.rst", "api/pypath.inputs.phosphoelm.phosphoelm_enzyme_substrate.rst", "api/pypath.inputs.phosphoelm.phosphoelm_interactions.rst", "api/pypath.inputs.phosphoelm.phosphoelm_kinases.rst", "api/pypath.inputs.phosphonetworks.rst", "api/pypath.inputs.phosphonetworks.phosphonetworks_enzyme_substrate.rst", "api/pypath.inputs.phosphonetworks.phosphonetworks_interactions.rst", "api/pypath.inputs.phosphopoint.rst", "api/pypath.inputs.phosphopoint.phosphopoint_directions.rst", "api/pypath.inputs.phosphopoint.phosphopoint_interactions.rst", "api/pypath.inputs.phosphosite.rst", "api/pypath.inputs.phosphosite.phosphosite_directions.rst", "api/pypath.inputs.phosphosite.phosphosite_enzyme_substrate.rst", "api/pypath.inputs.phosphosite.phosphosite_interactions.rst", "api/pypath.inputs.phosphosite.phosphosite_interactions_all.rst", "api/pypath.inputs.phosphosite.phosphosite_interactions_curated.rst", "api/pypath.inputs.phosphosite.phosphosite_interactions_new.rst", "api/pypath.inputs.phosphosite.phosphosite_interactions_noref.rst", "api/pypath.inputs.phosphosite.phosphosite_ptm_orthology.rst", "api/pypath.inputs.phosphosite.phosphosite_ptms.rst", "api/pypath.inputs.phosphosite.phosphosite_regsites.rst", "api/pypath.inputs.phosphosite.phosphosite_regsites_one_organism.rst", "api/pypath.inputs.phosphosite.regsites_tab.rst", "api/pypath.inputs.pisa.rst", "api/pypath.inputs.pisa.PisaBond.rst", "api/pypath.inputs.pisa.pisa_bonds.rst", "api/pypath.inputs.pisa.pisa_interfaces.rst", "api/pypath.inputs.pro.rst", "api/pypath.inputs.pro.get_pro.rst", "api/pypath.inputs.pro.pro_mapping.rst", "api/pypath.inputs.progeny.rst", "api/pypath.inputs.progeny.progeny_annotations.rst", "api/pypath.inputs.progeny.progeny_raw.rst", "api/pypath.inputs.proteinatlas.rst", "api/pypath.inputs.proteinatlas.get_proteinatlas.rst", "api/pypath.inputs.proteinatlas.proteinatlas_annotations.rst", "api/pypath.inputs.proteinatlas.proteinatlas_secretome_annotations.rst", "api/pypath.inputs.proteinatlas.proteinatlas_subcellular_annotations.rst", "api/pypath.inputs.proteins.rst", "api/pypath.inputs.proteins.variants.rst", "api/pypath.inputs.protmapper.rst", "api/pypath.inputs.protmapper.get_protmapper.rst", "api/pypath.inputs.protmapper.protmapper_enzyme_substrate.rst", "api/pypath.inputs.protmapper.protmapper_interactions.rst", "api/pypath.inputs.pubchem.rst", "api/pypath.inputs.pubchem.pubchem_mapping.rst", "api/pypath.inputs.pubmed.rst", "api/pypath.inputs.pubmed.get_pmid.rst", "api/pypath.inputs.pubmed.get_pubmeds.rst", "api/pypath.inputs.pubmed.only_pmids.rst", "api/pypath.inputs.pubmed.open_pubmed.rst", "api/pypath.inputs.pubmed.pmids_dict.rst", "api/pypath.inputs.pubmed.pmids_list.rst", "api/pypath.inputs.ramilowski2015.rst", "api/pypath.inputs.ramilowski2015.ramilowski_interactions.rst", "api/pypath.inputs.ramilowski2015.ramilowski_locations.rst", "api/pypath.inputs.ramp.rst", "api/pypath.inputs.ramp.ramp_id_types.rst", "api/pypath.inputs.ramp.ramp_id_types_2.rst", "api/pypath.inputs.ramp.ramp_list_tables.rst", "api/pypath.inputs.ramp.ramp_mapping.rst", "api/pypath.inputs.ramp.ramp_raw.rst", "api/pypath.inputs.ramp.ramp_show_tables.rst", "api/pypath.inputs.rdata.rst", "api/pypath.inputs.reaction.rst", "api/pypath.inputs.reaction.acsn_biopax.rst", "api/pypath.inputs.reaction.acsn_interactions_2.rst", "api/pypath.inputs.reaction.get_acsn_effects.rst", "api/pypath.inputs.reaction.get_controls.rst", "api/pypath.inputs.reaction.get_interactions.rst", "api/pypath.inputs.reaction.get_reactions.rst", "api/pypath.inputs.reaction.get_soup.rst", "api/pypath.inputs.reaction.panther_biopax.rst", "api/pypath.inputs.reaction.panther_interactions.rst", "api/pypath.inputs.reaction.pid_biopax.rst", "api/pypath.inputs.reaction.pid_interactions.rst", "api/pypath.inputs.reaction.process_complex.rst", "api/pypath.inputs.reaction.process_controls.rst", "api/pypath.inputs.reaction.process_reactions.rst", "api/pypath.inputs.reaction.reactions_biopax.rst", "api/pypath.inputs.reaction.reactome_biopax.rst", "api/pypath.inputs.reaction.reactome_bs.rst", "api/pypath.inputs.reaction.reactome_interactions.rst", "api/pypath.inputs.reaction.reactome_sbml.rst", "api/pypath.inputs.reactome.rst", "api/pypath.inputs.reactome.reactome_chebis.rst", "api/pypath.inputs.reactome.reactome_pathway_relations.rst", "api/pypath.inputs.reactome.reactome_pathways.rst", "api/pypath.inputs.reactome.reactome_uniprots.rst", "api/pypath.inputs.scconnect.rst", "api/pypath.inputs.scconnect.scconnect_annotations.rst", "api/pypath.inputs.scconnect.scconnect_complexes.rst", "api/pypath.inputs.scconnect.scconnect_interactions.rst", "api/pypath.inputs.science.rst", "api/pypath.inputs.science.science_download.rst", "api/pypath.inputs.sider.rst", "api/pypath.inputs.sider.SiderDrug.rst", "api/pypath.inputs.sider.SiderSideeffect.rst", "api/pypath.inputs.sider.SiderSideeffectMeddra.rst", "api/pypath.inputs.sider.SiderSideeffetFrequency.rst", "api/pypath.inputs.sider.sider_drug_names.rst", "api/pypath.inputs.sider.sider_meddra_side_effects.rst", "api/pypath.inputs.sider.sider_side_effect_frequencies.rst", "api/pypath.inputs.sider.sider_side_effects.rst", "api/pypath.inputs.signalink.rst", "api/pypath.inputs.signalink.signalink_annotations.rst", "api/pypath.inputs.signalink.signalink_function_annotations.rst", "api/pypath.inputs.signalink.signalink_interactions.rst", "api/pypath.inputs.signalink.signalink_pathway_annotations.rst", "api/pypath.inputs.signor.rst", "api/pypath.inputs.signor.signor_complexes.rst", "api/pypath.inputs.signor.signor_enzyme_substrate.rst", "api/pypath.inputs.signor.signor_interactions.rst", "api/pypath.inputs.signor.signor_pathway_annotations.rst", "api/pypath.inputs.signor.signor_pathways.rst", "api/pypath.inputs.signor.signor_protein_families.rst", "api/pypath.inputs.spike.rst", "api/pypath.inputs.spike.spike_complexes.rst", "api/pypath.inputs.spike.spike_interactions.rst", "api/pypath.inputs.stitch.rst", "api/pypath.inputs.stitch.stitch_actions_interactions.rst", "api/pypath.inputs.stitch.stitch_links_interactions.rst", "api/pypath.inputs.string.rst", "api/pypath.inputs.string.string_effects.rst", "api/pypath.inputs.string.string_links_interactions.rst", "api/pypath.inputs.string.string_physical_interactions.rst", "api/pypath.inputs.string.string_species.rst", "api/pypath.inputs.surfaceome.rst", "api/pypath.inputs.surfaceome.surfaceome_annotations.rst", "api/pypath.inputs.switches_elm.rst", "api/pypath.inputs.switches_elm.get_switches_elm.rst", "api/pypath.inputs.talklr.rst", "api/pypath.inputs.talklr.talklr_annotations.rst", "api/pypath.inputs.talklr.talklr_interactions.rst", "api/pypath.inputs.talklr.talklr_raw.rst", "api/pypath.inputs.tcdb.rst", "api/pypath.inputs.tcdb.tcdb_annotations.rst", "api/pypath.inputs.tcdb.tcdb_classes.rst", "api/pypath.inputs.tcdb.tcdb_families.rst", "api/pypath.inputs.tfcensus.rst", "api/pypath.inputs.tfcensus.tfcensus_annotations.rst", "api/pypath.inputs.threedcomplex.rst", "api/pypath.inputs.threedcomplex.threedcomplex_chains.rst", "api/pypath.inputs.threedcomplex.threedcomplex_complexes.rst", "api/pypath.inputs.threedcomplex.threedcomplex_contacts.rst", "api/pypath.inputs.threedcomplex.threedcomplex_ddi.rst", "api/pypath.inputs.threedcomplex.threedcomplex_nresidues.rst", "api/pypath.inputs.threedid.rst", "api/pypath.inputs.threedid.get_3did.rst", "api/pypath.inputs.threedid.get_3did_ddi.rst", "api/pypath.inputs.threedid.get_3did_dmi.rst", "api/pypath.inputs.threedid.process_3did_dmi.rst", "api/pypath.inputs.topdb.rst", "api/pypath.inputs.topdb.topdb_annotations.rst", "api/pypath.inputs.transmir.rst", "api/pypath.inputs.transmir.transmir_interactions.rst", "api/pypath.inputs.trip.rst", "api/pypath.inputs.trip.take_a_trip.rst", "api/pypath.inputs.trip.trip_find_uniprot.rst", "api/pypath.inputs.trip.trip_get_uniprot.rst", "api/pypath.inputs.trip.trip_interactions.rst", "api/pypath.inputs.trip.trip_process.rst", "api/pypath.inputs.trip.trip_process_table.rst", "api/pypath.inputs.trrust.rst", "api/pypath.inputs.trrust.trrust_human.rst", "api/pypath.inputs.trrust.trrust_interactions.rst", "api/pypath.inputs.trrust.trrust_mouse.rst", "api/pypath.inputs.twosides.rst", "api/pypath.inputs.twosides.twosides_interactions.rst", "api/pypath.inputs.unichem.rst", "api/pypath.inputs.unichem.info.rst", "api/pypath.inputs.unichem.unichem_info.rst", "api/pypath.inputs.unichem.unichem_mapping.rst", "api/pypath.inputs.unichem.unichem_sources.rst", "api/pypath.inputs.uniprot.rst", "api/pypath.inputs.uniprot.Taxon.rst", "api/pypath.inputs.uniprot.UniprotQuery.rst", "api/pypath.inputs.uniprot.UniprotRecordHistory.rst", "api/pypath.inputs.uniprot.deleted_uniprot_genesymbol.rst", "api/pypath.inputs.uniprot.get_uniprot_sec.rst", "api/pypath.inputs.uniprot.idmapping_idtypes.rst", "api/pypath.inputs.uniprot.protein_datasheet.rst", "api/pypath.inputs.uniprot.query_builder.rst", "api/pypath.inputs.uniprot.swissprot_deleted.rst", "api/pypath.inputs.uniprot.trembl_deleted.rst", "api/pypath.inputs.uniprot.uniprot_data.rst", "api/pypath.inputs.uniprot.uniprot_deleted.rst", "api/pypath.inputs.uniprot.uniprot_families.rst", "api/pypath.inputs.uniprot.uniprot_history.rst", "api/pypath.inputs.uniprot.uniprot_history_recent_datasheet.rst", "api/pypath.inputs.uniprot.uniprot_keywords.rst", "api/pypath.inputs.uniprot.uniprot_locations.rst", "api/pypath.inputs.uniprot.uniprot_ncbi_taxids.rst", "api/pypath.inputs.uniprot.uniprot_ncbi_taxids_2.rst", "api/pypath.inputs.uniprot.uniprot_preprocess.rst", "api/pypath.inputs.uniprot.uniprot_query.rst", "api/pypath.inputs.uniprot.uniprot_recent_version.rst", "api/pypath.inputs.uniprot.uniprot_taxonomy.rst", "api/pypath.inputs.uniprot.uniprot_tissues.rst", "api/pypath.inputs.uniprot.uniprot_topology.rst", "api/pypath.inputs.uniprot.valid_uniprot.rst", "api/pypath.inputs.uniprot_db.rst", "api/pypath.inputs.uniprot_db.all_swissprots.rst", "api/pypath.inputs.uniprot_db.all_trembls.rst", "api/pypath.inputs.uniprot_db.all_uniprots.rst", "api/pypath.inputs.uniprot_db.get_db.rst", "api/pypath.inputs.uniprot_db.init_db.rst", "api/pypath.inputs.uniprot_db.is_swissprot.rst", "api/pypath.inputs.uniprot_db.is_trembl.rst", "api/pypath.inputs.uniprot_db.is_uniprot.rst", "api/pypath.inputs.wang.rst", "api/pypath.inputs.wang.cui_interactions.rst", "api/pypath.inputs.wang.hsn_interactions.rst", "api/pypath.inputs.wang.wang_annotations.rst", "api/pypath.inputs.wang.wang_interactions.rst", "api/pypath.inputs.wojtowicz2020.rst", "api/pypath.inputs.wojtowicz2020.wojtowicz2020_interactions.rst", "api/pypath.inputs.wojtowicz2020.wojtowicz2020_raw.rst", "api/pypath.inputs.zhong2015.rst", "api/pypath.inputs.zhong2015.zhong2015_annotations.rst", "api/pypath.internals.rst", "api/pypath.internals.annot_formats.rst", "api/pypath.internals.annot_formats.AnnotDef.rst", "api/pypath.internals.annot_formats.AnnotDefKey.rst", "api/pypath.internals.annot_formats.AnnotOp.rst", "api/pypath.internals.annot_formats.AnnotationGroup.rst", "api/pypath.internals.input_formats.rst", "api/pypath.internals.input_formats.ArrayMapping.rst", "api/pypath.internals.input_formats.BiomartMapping.rst", "api/pypath.internals.input_formats.FileMapping.rst", "api/pypath.internals.input_formats.HmdbMapping.rst", "api/pypath.internals.input_formats.MappingInput.rst", "api/pypath.internals.input_formats.NetworkInput.rst", "api/pypath.internals.input_formats.PickleMapping.rst", "api/pypath.internals.input_formats.ProMapping.rst", "api/pypath.internals.input_formats.RampMapping.rst", "api/pypath.internals.input_formats.ReadList.rst", "api/pypath.internals.input_formats.UnichemMapping.rst", "api/pypath.internals.input_formats.UniprotListMapping.rst", "api/pypath.internals.input_formats.UniprotMapping.rst", "api/pypath.internals.intera.rst", "api/pypath.internals.intera.Complex.rst", "api/pypath.internals.intera.Domain.rst", "api/pypath.internals.intera.DomainDomain.rst", "api/pypath.internals.intera.DomainMotif.rst", "api/pypath.internals.intera.Interface.rst", "api/pypath.internals.intera.Motif.rst", "api/pypath.internals.intera.Ptm.rst", "api/pypath.internals.intera.Regulation.rst", "api/pypath.internals.intera.Residue.rst", "api/pypath.internals.license.rst", "api/pypath.internals.license.License.rst", "api/pypath.internals.license.LicenseAttrib.rst", "api/pypath.internals.license.LicenseFeature.rst", "api/pypath.internals.license.LicensePurpose.rst", "api/pypath.internals.license.LicenseSharing.rst", "api/pypath.internals.maps.rst", "api/pypath.internals.refs.rst", "api/pypath.internals.refs.Reference.rst", "api/pypath.internals.refs.get_pubmed_data.rst", "api/pypath.internals.resource.rst", "api/pypath.internals.resource.AbstractResource.rst", "api/pypath.internals.resource.EnzymeSubstrateResource.rst", "api/pypath.internals.resource.EnzymeSubstrateResourceKey.rst", "api/pypath.internals.resource.NetworkDataset.rst", "api/pypath.internals.resource.NetworkResource.rst", "api/pypath.internals.resource.NetworkResourceKey.rst", "api/pypath.internals.resource.ResourceAttributes.rst", "api/pypath.legacy.rst", "api/pypath.legacy.db_categories.rst", "api/pypath.legacy.db_categories.get_categories.rst", "api/pypath.legacy.db_categories.get_category.rst", "api/pypath.log.rst", "api/pypath.resources.rst", "api/pypath.resources.controller.rst", "api/pypath.resources.controller.ResourceController.rst", "api/pypath.resources.data.rst", "api/pypath.resources.data_formats.rst", "api/pypath.resources.data_formats.activity_flow.rst", "api/pypath.resources.data_formats.enzyme_substrate.rst", "api/pypath.resources.data_formats.interaction.rst", "api/pypath.resources.data_formats.interaction_htp.rst", "api/pypath.resources.data_formats.pathway_bad.rst", "api/pypath.resources.data_formats.reaction_pc.rst", "api/pypath.resources.data_formats.transcription_deprecated.rst", "api/pypath.resources.data_formats.transcription_onebyone.rst", "api/pypath.resources.get_controller.rst", "api/pypath.resources.licenses.rst", "api/pypath.resources.licenses.Licenses.rst", "api/pypath.resources.network.rst", "api/pypath.resources.network.choose_dataset.rst", "api/pypath.resources.network.dataset_priority.rst", "api/pypath.resources.network.dorothea_expand_levels.rst", "api/pypath.resources.urls.rst", "api/pypath.share.rst", "api/pypath.share.cache.rst", "api/pypath.share.cache.cache_item.rst", "api/pypath.share.cache.cache_path.rst", "api/pypath.share.cache.default_cachedir.rst", "api/pypath.share.cache.get_cachedir.rst", "api/pypath.share.common.rst", "api/pypath.share.constants.rst", "api/pypath.share.curl.rst", "api/pypath.share.curl.Curl.rst", "api/pypath.share.curl.FileOpener.rst", "api/pypath.share.curl.RemoteFile.rst", "api/pypath.share.curl.cache_delete_off.rst", "api/pypath.share.curl.cache_delete_on.rst", "api/pypath.share.curl.cache_off.rst", "api/pypath.share.curl.cache_on.rst", "api/pypath.share.curl.cache_print_off.rst", "api/pypath.share.curl.cache_print_on.rst", "api/pypath.share.curl.debug_off.rst", "api/pypath.share.curl.debug_on.rst", "api/pypath.share.curl.dryrun_off.rst", "api/pypath.share.curl.dryrun_on.rst", "api/pypath.share.curl.is_url.rst", "api/pypath.share.curl.preserve_off.rst", "api/pypath.share.curl.preserve_on.rst", "api/pypath.share.progress.rst", "api/pypath.share.progress.Progress.rst", "api/pypath.share.session.rst", "api/pypath.share.settings.rst", "api/pypath.utils.rst", "api/pypath.utils.go.rst", "api/pypath.utils.go.GOAnnotation.rst", "api/pypath.utils.go.GOCustomAnnotation.rst", "api/pypath.utils.go.GeneOntology.rst", "api/pypath.utils.go.annotate.rst", "api/pypath.utils.go.get_db.rst", "api/pypath.utils.go.init_db.rst", "api/pypath.utils.go.load_go.rst", "api/pypath.utils.mapping.rst", "api/pypath.utils.mapping.MapReader.rst", "api/pypath.utils.mapping.Mapper.rst", "api/pypath.utils.mapping.MappingTable.rst", "api/pypath.utils.mapping.MappingTableKey.rst", "api/pypath.utils.mapping.UNIPROT_ID_TYPES.rst", "api/pypath.utils.mapping.get_mapper.rst", "api/pypath.utils.mapping.guess_type.rst", "api/pypath.utils.mapping.id_from_label.rst", "api/pypath.utils.mapping.id_from_label0.rst", "api/pypath.utils.mapping.id_types.rst", "api/pypath.utils.mapping.init.rst", "api/pypath.utils.mapping.label.rst", "api/pypath.utils.mapping.map_name.rst", "api/pypath.utils.mapping.map_name0.rst", "api/pypath.utils.mapping.map_names.rst", "api/pypath.utils.mapping.mapping_tables.rst", "api/pypath.utils.mapping.translation_df.rst", "api/pypath.utils.mapping.translation_dict.rst", "api/pypath.utils.metabo.rst", "api/pypath.utils.orthology.rst", "api/pypath.utils.orthology.EnsemblOrtholog.rst", "api/pypath.utils.orthology.EnsemblOrthology.rst", "api/pypath.utils.orthology.HomologeneOrtholog.rst", "api/pypath.utils.orthology.HomologeneOrthology.rst", "api/pypath.utils.orthology.OmaOrtholog.rst", "api/pypath.utils.orthology.OmaOrthology.rst", "api/pypath.utils.orthology.OrthologBase.rst", "api/pypath.utils.orthology.OrthologMeta.rst", "api/pypath.utils.orthology.OrthologyManager.rst", "api/pypath.utils.orthology.OrthologyTableKey.rst", "api/pypath.utils.orthology.ProteinOrthology.rst", "api/pypath.utils.orthology.Proteomes.rst", "api/pypath.utils.orthology.PtmOrthology.rst", "api/pypath.utils.orthology.SequenceContainer.rst", "api/pypath.utils.orthology.get_df.rst", "api/pypath.utils.orthology.get_dict.rst", "api/pypath.utils.orthology.get_manager.rst", "api/pypath.utils.orthology.init.rst", "api/pypath.utils.orthology.translate.rst", "api/pypath.utils.orthology.translate_df.rst", "api/pypath.utils.pdb.rst", "api/pypath.utils.pdb.Residue.rst", "api/pypath.utils.pdb.ResidueMapper.rst", "api/pypath.utils.pdb.Segment.rst", "api/pypath.utils.pdb.residue_pdb.rst", "api/pypath.utils.proteomicsdb.rst", "api/pypath.utils.proteomicsdb.ProteomicsDB.rst", "api/pypath.utils.pyreact.rst", "api/pypath.utils.pyreact.AttributeHandler.rst", "api/pypath.utils.pyreact.BioPaxReader.rst", "api/pypath.utils.pyreact.Complex.rst", "api/pypath.utils.pyreact.ComplexVariations.rst", "api/pypath.utils.pyreact.Control.rst", "api/pypath.utils.pyreact.Entity.rst", "api/pypath.utils.pyreact.EntitySet.rst", "api/pypath.utils.pyreact.Intersecting.rst", "api/pypath.utils.pyreact.Protein.rst", "api/pypath.utils.pyreact.ProteinFamily.rst", "api/pypath.utils.pyreact.PyReact.rst", "api/pypath.utils.pyreact.Reaction.rst", "api/pypath.utils.pyreact.ReactionSide.rst", "api/pypath.utils.pyreact.Reference.rst", "api/pypath.utils.reflists.rst", "api/pypath.utils.reflists.ReferenceListManager.rst", "api/pypath.utils.reflists.check.rst", "api/pypath.utils.reflists.get_manager.rst", "api/pypath.utils.reflists.get_reflist.rst", "api/pypath.utils.reflists.init.rst", "api/pypath.utils.reflists.is_not.rst", "api/pypath.utils.reflists.select.rst", "api/pypath.utils.residues.rst", "api/pypath.utils.residues.ResidueMapper.rst", "api/pypath.utils.seq.rst", "api/pypath.utils.seq.Pfam.rst", "api/pypath.utils.seq.Resource.rst", "api/pypath.utils.seq.Seq.rst", "api/pypath.utils.seq.get_isoforms.rst", "api/pypath.utils.seq.read_fasta.rst", "api/pypath.utils.seq.swissprot_seq.rst", "api/pypath.utils.taxonomy.rst", "api/pypath.utils.taxonomy.ensure_common_name.rst", "api/pypath.utils.taxonomy.ensure_ensembl_name.rst", "api/pypath.utils.taxonomy.ensure_latin_name.rst", "api/pypath.utils.taxonomy.ensure_ncbi_tax_id.rst", "api/pypath.utils.taxonomy.get_db.rst", "api/pypath.utils.taxonomy.init_db.rst", "api/pypath.utils.taxonomy.short_latin_names.rst", "api/pypath.utils.taxonomy.shorten_latin_name.rst", "api/pypath.utils.taxonomy.taxid_from_common_name.rst", "api/pypath.utils.taxonomy.taxid_from_dbptm_taxon_name.rst", "api/pypath.utils.taxonomy.taxid_from_ensembl_name.rst", "api/pypath.utils.taxonomy.taxid_from_latin_name.rst", "api/pypath.utils.taxonomy.taxid_from_nonstandard.rst", "api/pypath.utils.taxonomy.uniprot_taxid.rst", "api/pypath.utils.unichem.rst", "api/pypath.utils.unichem.Unichem.rst", "api/pypath.utils.uniprot.rst", "api/pypath.utils.uniprot.UniprotProtein.rst", "api/pypath.utils.uniprot.ac.rst", "api/pypath.utils.uniprot.activity_regulation.rst", "api/pypath.utils.uniprot.activity_regulation_with_xrefs.rst", "api/pypath.utils.uniprot.alternative_products.rst", "api/pypath.utils.uniprot.alternative_products_with_xrefs.rst", "api/pypath.utils.uniprot.browse.rst", "api/pypath.utils.uniprot.catalytic_activity.rst", "api/pypath.utils.uniprot.catalytic_activity_with_xrefs.rst", "api/pypath.utils.uniprot.collect.rst", "api/pypath.utils.uniprot.databases.rst", "api/pypath.utils.uniprot.disease.rst", "api/pypath.utils.uniprot.disease_with_xrefs.rst", "api/pypath.utils.uniprot.ec.rst", "api/pypath.utils.uniprot.features_table.rst", "api/pypath.utils.uniprot.full_name.rst", "api/pypath.utils.uniprot.function.rst", "api/pypath.utils.uniprot.function_genecards.rst", "api/pypath.utils.uniprot.function_or_genecards.rst", "api/pypath.utils.uniprot.function_with_genecards.rst", "api/pypath.utils.uniprot.function_with_xrefs.rst", "api/pypath.utils.uniprot.genesymbol.rst", "api/pypath.utils.uniprot.has_tag.rst", "api/pypath.utils.uniprot.id.rst", "api/pypath.utils.uniprot.info.rst", "api/pypath.utils.uniprot.info_section.rst", "api/pypath.utils.uniprot.interaction.rst", "api/pypath.utils.uniprot.interaction_with_xrefs.rst", "api/pypath.utils.uniprot.is_reviewed.rst", "api/pypath.utils.uniprot.itertag.rst", "api/pypath.utils.uniprot.keywords.rst", "api/pypath.utils.uniprot.keywords_with_xrefs.rst", "api/pypath.utils.uniprot.length.rst", "api/pypath.utils.uniprot.lengths.rst", "api/pypath.utils.uniprot.load.rst", "api/pypath.utils.uniprot.organism.rst", "api/pypath.utils.uniprot.print_features.rst", "api/pypath.utils.uniprot.ptm.rst", "api/pypath.utils.uniprot.ptm_with_xrefs.rst", "api/pypath.utils.uniprot.query.rst", "api/pypath.utils.uniprot.reload.rst", "api/pypath.utils.uniprot.remove_xrefs.rst", "api/pypath.utils.uniprot.sequence.rst", "api/pypath.utils.uniprot.sequence_caution.rst", "api/pypath.utils.uniprot.sequence_caution_with_xrefs.rst", "api/pypath.utils.uniprot.similarity.rst", "api/pypath.utils.uniprot.similarity_with_xrefs.rst", "api/pypath.utils.uniprot.subcellular_location.rst", "api/pypath.utils.uniprot.subcellular_location_with_xrefs.rst", "api/pypath.utils.uniprot.subunit.rst", "api/pypath.utils.uniprot.subunit_with_xrefs.rst", "api/pypath.utils.uniprot.tissue_specificity.rst", "api/pypath.utils.uniprot.tissue_specificity_with_xrefs.rst", "api/pypath.utils.uniprot.update_databases.rst", "api/pypath.utils.uniprot.update_info.rst", "api/pypath.utils.uniprot.web_resource.rst", "api/pypath.utils.uniprot.web_resource_with_xrefs.rst", "api/pypath.utils.uniprot.weight.rst", "api/pypath.utils.uniprot.weights.rst", "api/pypath.visual.rst", "api/pypath.visual.drawing.rst", "api/pypath.visual.drawing.InterSet.rst", "api/pypath.visual.drawing.Plot.rst", "api/pypath.visual.igraph_drawing.rst", "api/pypath.visual.igraph_drawing.AbstractCairoGraphDrawer.rst", "api/pypath.visual.igraph_drawing.ArrowEdgeDrawer.rst", "api/pypath.visual.igraph_drawing.DefaultGraphDrawerFFsupport.rst", "api/pypath.visual.igraph_drawing.DefaultVertexDrawer.rst", "api/pypath.visual.igraph_drawing.TextDrawer.rst", "api/pypath.visual.igraph_drawing.edge.rst", "api/pypath.visual.igraph_drawing.edge.AbstractEdgeDrawer.rst", "api/pypath.visual.igraph_drawing.edge.AlphaVaryingEdgeDrawer.rst", "api/pypath.visual.igraph_drawing.edge.ArrowEdgeDrawer.rst", "api/pypath.visual.igraph_drawing.edge.DarkToLightEdgeDrawer.rst", "api/pypath.visual.igraph_drawing.edge.LightToDarkEdgeDrawer.rst", "api/pypath.visual.igraph_drawing.edge.TaperedEdgeDrawer.rst", "api/pypath.visual.igraph_drawing.vertex.rst", "api/pypath.visual.igraph_drawing.vertex.AbstractCairoDrawer.rst", "api/pypath.visual.igraph_drawing.vertex.AbstractCairoVertexDrawer.rst", "api/pypath.visual.igraph_drawing.vertex.AbstractDrawer.rst", "api/pypath.visual.igraph_drawing.vertex.AbstractVertexDrawer.rst", "api/pypath.visual.igraph_drawing.vertex.DefaultVertexDrawer.rst", "contents.rst", "index.rst", "notebooks/manual.ipynb", "reference.rst", "releasehistory.rst", "webservice.rst"], "titles": ["pypath", "pypath.core", "pypath.core.annot", "pypath.core.annot.Adhesome", "pypath.core.annot.Almen2009", "pypath.core.annot.AnnotationBase", "pypath.core.annot.AnnotationTable", "pypath.core.annot.Baccin2019", "pypath.core.annot.Biogps", "pypath.core.annot.CancerGeneCensus", "pypath.core.annot.Cancerdrugsdb", "pypath.core.annot.Cancersea", "pypath.core.annot.CellPhoneDB", "pypath.core.annot.CellPhoneDBComplex", "pypath.core.annot.CellSurfaceProteinAtlas", "pypath.core.annot.CellSurfaceProteinAtlasCellType", "pypath.core.annot.Cellcall", "pypath.core.annot.Cellcellinteractions", "pypath.core.annot.Cellchatdb", "pypath.core.annot.CellchatdbComplex", "pypath.core.annot.Cellinker", "pypath.core.annot.CellinkerComplex", "pypath.core.annot.Celltalkdb", "pypath.core.annot.Celltypist", "pypath.core.annot.Comppi", "pypath.core.annot.Connectomedb", "pypath.core.annot.Corum", "pypath.core.annot.CorumFuncat", "pypath.core.annot.CorumGO", "pypath.core.annot.Cpad", "pypath.core.annot.CustomAnnotation", "pypath.core.annot.Cytosig", "pypath.core.annot.Dgidb", "pypath.core.annot.Disgenet", "pypath.core.annot.Embrace", "pypath.core.annot.Exocarta", "pypath.core.annot.GOCustomIntercell", "pypath.core.annot.GOIntercell", "pypath.core.annot.Gpcrdb", "pypath.core.annot.GuideToPharmacology", "pypath.core.annot.HPO", "pypath.core.annot.Hgnc", "pypath.core.annot.HpmrComplex", "pypath.core.annot.HumanPlasmaMembraneReceptome", "pypath.core.annot.HumanProteinAtlas", "pypath.core.annot.HumanProteinAtlasSecretome", "pypath.core.annot.HumanProteinAtlasSubcellular", "pypath.core.annot.Humancellmap", "pypath.core.annot.Icellnet", "pypath.core.annot.IcellnetComplex", "pypath.core.annot.Integrins", "pypath.core.annot.InterPro", "pypath.core.annot.Intogen", "pypath.core.annot.Italk", "pypath.core.annot.KeggPathways", "pypath.core.annot.KeggPathwaysPC", "pypath.core.annot.Kinasedotcom", "pypath.core.annot.Kirouac2010", "pypath.core.annot.Lambert2018", "pypath.core.annot.LigandReceptor", "pypath.core.annot.Locate", "pypath.core.annot.Lrdb", "pypath.core.annot.Matrisome", "pypath.core.annot.Matrixdb", "pypath.core.annot.Mcam", "pypath.core.annot.Membranome", "pypath.core.annot.Msigdb", "pypath.core.annot.NetpathPathways", "pypath.core.annot.Opm", "pypath.core.annot.Panglaodb", "pypath.core.annot.Phobius", "pypath.core.annot.Phosphatome", "pypath.core.annot.Progeny", "pypath.core.annot.Ramilowski2015", "pypath.core.annot.Ramilowski2015Location", "pypath.core.annot.Scconnect", "pypath.core.annot.ScconnectComplex", "pypath.core.annot.SignalinkFunctions", "pypath.core.annot.SignalinkPathways", "pypath.core.annot.SignorPathways", "pypath.core.annot.Surfaceome", "pypath.core.annot.Talklr", "pypath.core.annot.Tcdb", "pypath.core.annot.Tfcensus", "pypath.core.annot.Topdb", "pypath.core.annot.UniprotFamilies", "pypath.core.annot.UniprotKeywords", "pypath.core.annot.UniprotLocations", "pypath.core.annot.UniprotTissues", "pypath.core.annot.UniprotTopologies", "pypath.core.annot.Vesiclepedia", "pypath.core.annot.Wang", "pypath.core.annot.Zhong2015", "pypath.core.annot.get_db", "pypath.core.annot.init_db", "pypath.core.attrs", "pypath.core.attrs.AttributeHandler", "pypath.core.common", "pypath.core.common.filter_network_df", "pypath.core.complex", "pypath.core.complex.AbstractComplexResource", "pypath.core.complex.CellPhoneDB", "pypath.core.complex.Cellchatdb", "pypath.core.complex.Cellinker", "pypath.core.complex.Compleat", "pypath.core.complex.ComplexAggregator", "pypath.core.complex.ComplexPortal", "pypath.core.complex.Corum", "pypath.core.complex.GuideToPharmacology", "pypath.core.complex.Havugimana", "pypath.core.complex.Hpmr", "pypath.core.complex.Humap", "pypath.core.complex.Humap2", "pypath.core.complex.Icellnet", "pypath.core.complex.Kegg", "pypath.core.complex.Pdb", "pypath.core.complex.Signor", "pypath.core.complex.Spike", "pypath.core.complex.all_complexes", "pypath.core.complex.get_db", "pypath.core.complex.init_db", "pypath.core.entity", "pypath.core.entity.Entity", "pypath.core.entity.EntityKey", "pypath.core.entity.EntityList", "pypath.core.enz_sub", "pypath.core.enz_sub.EnzymeSubstrateAggregator", "pypath.core.enz_sub.EnzymeSubstrateOrthologyProcessor", "pypath.core.enz_sub.EnzymeSubstrateProcessor", "pypath.core.enz_sub.get_db", "pypath.core.enz_sub.init_db", "pypath.core.evidence", "pypath.core.evidence.Evidence", "pypath.core.evidence.Evidences", "pypath.core.interaction", "pypath.core.interaction.Interaction", "pypath.core.interaction.InteractionDataFrameRecord", "pypath.core.interaction.InteractionKey", "pypath.core.intercell", "pypath.core.intercell.IntercellAnnotation", "pypath.core.intercell.get_db", "pypath.core.intercell.init_db", "pypath.core.intercell_annot", "pypath.core.intercell_annot.excludes", "pypath.core.network", "pypath.core.network.Network", "pypath.core.network.NetworkEntityCollection", "pypath.core.network.NetworkStatsRecord", "pypath.core.network.get_db", "pypath.core.network.init_db", "pypath.data", "pypath.disclaimer", "pypath.info", "pypath.inputs", "pypath.inputs.abs", "pypath.inputs.abs.abs_interactions", "pypath.inputs.acsn", "pypath.inputs.acsn.acsn_interactions", "pypath.inputs.acsn.acsn_interactions_sif", "pypath.inputs.adhesome", "pypath.inputs.adhesome.adhesome_annotations", "pypath.inputs.adhesome.adhesome_interactions", "pypath.inputs.adrecs", "pypath.inputs.adrecs.AdrecsAdr", "pypath.inputs.adrecs.AdrecsChildParent", "pypath.inputs.adrecs.AdrecsDrug", "pypath.inputs.adrecs.AdrecsDrugAdr", "pypath.inputs.adrecs.AdrecsTerm", "pypath.inputs.adrecs.adrecs_adr_ontology", "pypath.inputs.adrecs.adrecs_drug_adr", "pypath.inputs.adrecs.adrecs_drug_identifiers", "pypath.inputs.adrecs.adrecs_hierarchy", "pypath.inputs.almen2009", "pypath.inputs.almen2009.almen2009_annotations", "pypath.inputs.baccin2019", "pypath.inputs.baccin2019.baccin2019_annotations", "pypath.inputs.baccin2019.baccin2019_interactions", "pypath.inputs.biogps", "pypath.inputs.biogps.BiogpsDataset", "pypath.inputs.biogps.biogps_annotations", "pypath.inputs.biogps.biogps_datasets", "pypath.inputs.biogps.biogps_download", "pypath.inputs.biogps.biogps_download_all", "pypath.inputs.biogrid", "pypath.inputs.biogrid.biogrid_all_interactions", "pypath.inputs.biogrid.biogrid_interactions", "pypath.inputs.biomart", "pypath.inputs.biomart.biomart_homology", "pypath.inputs.biomart.biomart_microarray", "pypath.inputs.biomart.biomart_microarray_types", "pypath.inputs.biomart.biomart_microarrays", "pypath.inputs.biomart.biomart_query", "pypath.inputs.biomodels", "pypath.inputs.biomodels.download_single_model", "pypath.inputs.biomodels.get_all_models", "pypath.inputs.biomodels.get_biomodels", "pypath.inputs.biomodels.get_biomodels_req", "pypath.inputs.biomodels.get_single_model", "pypath.inputs.ca1", "pypath.inputs.ca1.ca1_interactions", "pypath.inputs.cancercellmap", "pypath.inputs.cancercellmap.ccmap_interactions", "pypath.inputs.cancerdrugsdb", "pypath.inputs.cancerdrugsdb.cancerdrugsdb_annotations", "pypath.inputs.cancerdrugsdb.cancerdrugsdb_download", "pypath.inputs.cancerdrugsdb.cancerdrugsdb_interactions", "pypath.inputs.cancersea", "pypath.inputs.cancersea.cancersea_annotations", "pypath.inputs.cell", "pypath.inputs.cell.cell_supplementary", "pypath.inputs.cellcall", "pypath.inputs.cellcall.cellcall_annotations", "pypath.inputs.cellcall.cellcall_download", "pypath.inputs.cellcall.cellcall_download_all", "pypath.inputs.cellcall.cellcall_interactions", "pypath.inputs.cellcellinteractions", "pypath.inputs.cellcellinteractions.cellcellinteractions_annotations", "pypath.inputs.cellchatdb", "pypath.inputs.cellchatdb.cellchatdb_annotations", "pypath.inputs.cellchatdb.cellchatdb_cofactors", "pypath.inputs.cellchatdb.cellchatdb_complexes", "pypath.inputs.cellchatdb.cellchatdb_download", "pypath.inputs.cellchatdb.cellchatdb_interactions", "pypath.inputs.cellinker", "pypath.inputs.cellinker.CellinkerInteraction", "pypath.inputs.cellinker.cellinker_annotations", "pypath.inputs.cellinker.cellinker_complex_annotations", "pypath.inputs.cellinker.cellinker_complexes", "pypath.inputs.cellinker.cellinker_complexes_raw", "pypath.inputs.cellinker.cellinker_lr_interactions", "pypath.inputs.cellinker.cellinker_lr_interactions_raw", "pypath.inputs.cellinker.cellinker_protein_annotations", "pypath.inputs.cellinker.cellinker_smol_interactions", "pypath.inputs.cellinker.cellinker_smol_interactions_raw", "pypath.inputs.cellinker.components_to_complex", "pypath.inputs.cellphonedb", "pypath.inputs.cellphonedb.CellPhoneDBAnnotation", "pypath.inputs.cellphonedb.cellphonedb_complex_annotations", "pypath.inputs.cellphonedb.cellphonedb_complexes", "pypath.inputs.cellphonedb.cellphonedb_interactions", "pypath.inputs.cellphonedb.cellphonedb_ligands_receptors", "pypath.inputs.cellphonedb.cellphonedb_protein_annotations", "pypath.inputs.celltalkdb", "pypath.inputs.celltalkdb.celltalkdb_annotations", "pypath.inputs.celltalkdb.celltalkdb_download", "pypath.inputs.celltalkdb.celltalkdb_interactions", "pypath.inputs.celltypist", "pypath.inputs.celltypist.celltypist_annotations", "pypath.inputs.chembl", "pypath.inputs.chembl.chembl_activities", "pypath.inputs.chembl.chembl_assays", "pypath.inputs.chembl.chembl_documents", "pypath.inputs.chembl.chembl_drug_indications", "pypath.inputs.chembl.chembl_mechanisms", "pypath.inputs.chembl.chembl_molecules", "pypath.inputs.chembl.chembl_targets", "pypath.inputs.clinvar", "pypath.inputs.clinvar.clinvar_citations", "pypath.inputs.clinvar.clinvar_raw", "pypath.inputs.collectri", "pypath.inputs.collectri.collectri_interactions", "pypath.inputs.collectri.collectri_raw", "pypath.inputs.common", "pypath.inputs.common.csv_sep_change", "pypath.inputs.common.glom_fields", "pypath.inputs.common.json_extract", "pypath.inputs.common.json_read", "pypath.inputs.common.read_table", "pypath.inputs.common.read_xls", "pypath.inputs.compath", "pypath.inputs.compath.compath_mappings", "pypath.inputs.compleat", "pypath.inputs.compleat.compleat_complexes", "pypath.inputs.compleat.compleat_raw", "pypath.inputs.complexportal", "pypath.inputs.complexportal.complexportal_complexes", "pypath.inputs.comppi", "pypath.inputs.comppi.comppi_interaction_locations", "pypath.inputs.comppi.comppi_locations", "pypath.inputs.connectomedb", "pypath.inputs.connectomedb.connectomedb_annotations", "pypath.inputs.connectomedb.connectomedb_interactions", "pypath.inputs.corum", "pypath.inputs.corum.corum_complexes", "pypath.inputs.cosmic", "pypath.inputs.cosmic.cancer_gene_census_annotations", "pypath.inputs.cpad", "pypath.inputs.cpad.cpad_annotations", "pypath.inputs.cpad.cpad_pathway_cancer", "pypath.inputs.cpad.get_cpad", "pypath.inputs.cpdb", "pypath.inputs.cpdb.cpdb_interactions", "pypath.inputs.cpdb.cpdb_interactions_ltp", "pypath.inputs.credentials", "pypath.inputs.credentials.credentials", "pypath.inputs.csa", "pypath.inputs.csa.get_csa", "pypath.inputs.cspa", "pypath.inputs.cspa.cspa_annotations", "pypath.inputs.cspa.cspa_cell_type_annotations", "pypath.inputs.cspa.cspa_cell_types", "pypath.inputs.ctdbase", "pypath.inputs.ctdbase.ctdbase_relations", "pypath.inputs.ctdbase.ctdbase_vocabulary", "pypath.inputs.cytosig", "pypath.inputs.cytosig.cytosig_annotations", "pypath.inputs.cytosig.cytosig_df", "pypath.inputs.dbptm", "pypath.inputs.dbptm.dbptm_enzyme_substrate", "pypath.inputs.dbptm.dbptm_enzyme_substrate_old", "pypath.inputs.dbptm.dbptm_interactions", "pypath.inputs.ddinter", "pypath.inputs.ddinter.ddinter_drug_interactions", "pypath.inputs.ddinter.ddinter_identifiers", "pypath.inputs.ddinter.ddinter_interactions", "pypath.inputs.ddinter.ddinter_mappings", "pypath.inputs.ddinter.ddinter_n_drugs", "pypath.inputs.deathdomain", "pypath.inputs.deathdomain.deathdomain_interactions", "pypath.inputs.deathdomain.deathdomain_interactions_rescued", "pypath.inputs.depod", "pypath.inputs.depod.depod_enzyme_substrate", "pypath.inputs.depod.depod_interactions", "pypath.inputs.dgidb", "pypath.inputs.dgidb.dgidb_annotations", "pypath.inputs.dgidb.dgidb_interactions", "pypath.inputs.dgidb.get_dgidb_old", "pypath.inputs.dip", "pypath.inputs.dip.dip_interactions", "pypath.inputs.dip.dip_login", "pypath.inputs.diseases", "pypath.inputs.diseases.diseases_general", "pypath.inputs.diseases.experiments_filtered", "pypath.inputs.diseases.experiments_full", "pypath.inputs.diseases.knowledge_filtered", "pypath.inputs.diseases.knowledge_full", "pypath.inputs.diseases.textmining_filtered", "pypath.inputs.diseases.textmining_full", "pypath.inputs.domino", "pypath.inputs.domino.domino_ddi", "pypath.inputs.domino.domino_enzsub", "pypath.inputs.domino.domino_interactions", "pypath.inputs.domino.get_domino", "pypath.inputs.dorothea", "pypath.inputs.dorothea.DorotheaInteraction", "pypath.inputs.dorothea.dorothea_full_raw", "pypath.inputs.dorothea.dorothea_interactions", "pypath.inputs.dorothea.dorothea_interactions_old", "pypath.inputs.dorothea.dorothea_old_csv", "pypath.inputs.dorothea.dorothea_rda_raw", "pypath.inputs.dorothea.get_dorothea_old", "pypath.inputs.dorothea.get_tfregulons", "pypath.inputs.dorothea.tfregulons_interactions", "pypath.inputs.dorothea.tfregulons_interactions_old", "pypath.inputs.drugbank", "pypath.inputs.drugbank.DrugbankFull", "pypath.inputs.drugbank.drugbank_annotations", "pypath.inputs.drugbank.drugbank_drugs", "pypath.inputs.drugbank.drugbank_interactions", "pypath.inputs.drugbank.drugbank_mapping", "pypath.inputs.drugbank.drugbank_raw_interactions", "pypath.inputs.drugcentral", "pypath.inputs.drugcentral.drugcentral_drugs", "pypath.inputs.drugcentral.drugcentral_interactions", "pypath.inputs.drugcentral.drugcentral_mapping", "pypath.inputs.ebi", "pypath.inputs.ebi.ebi_rest", "pypath.inputs.elm", "pypath.inputs.elm.elm_classes", "pypath.inputs.elm.elm_domains", "pypath.inputs.elm.elm_instances", "pypath.inputs.elm.elm_interactions", "pypath.inputs.embopress", "pypath.inputs.embopress.embopress_supplementary", "pypath.inputs.embrace", "pypath.inputs.embrace.embrace_annotations", "pypath.inputs.embrace.embrace_interactions", "pypath.inputs.embrace.embrace_raw", "pypath.inputs.embrace.embrace_translated", "pypath.inputs.encode", "pypath.inputs.encode.encode_tf_mirna_interactions", "pypath.inputs.ensembl", "pypath.inputs.ensembl.ensembl_organisms", "pypath.inputs.eutils", "pypath.inputs.eutils.esummary", "pypath.inputs.exocarta", "pypath.inputs.exocarta.get_exocarta", "pypath.inputs.exocarta.get_vesiclepedia", "pypath.inputs.expasy", "pypath.inputs.expasy.expasy_enzyme_classes", "pypath.inputs.expasy.expasy_enzymes", "pypath.inputs.genecards", "pypath.inputs.genecards.genecards_datasheet", "pypath.inputs.genecards.genecards_soup", "pypath.inputs.genecards.genecards_summaries", "pypath.inputs.get_method", "pypath.inputs.go", "pypath.inputs.go.get_go_desc", "pypath.inputs.go.get_go_quick", "pypath.inputs.go.get_goslim", "pypath.inputs.go.go_ancestors", "pypath.inputs.go.go_ancestors_goose", "pypath.inputs.go.go_ancestors_quickgo", "pypath.inputs.go.go_annotations", "pypath.inputs.go.go_annotations_all", "pypath.inputs.go.go_annotations_goa", "pypath.inputs.go.go_annotations_goose", "pypath.inputs.go.go_annotations_quickgo", "pypath.inputs.go.go_annotations_solr", "pypath.inputs.go.go_annotations_uniprot", "pypath.inputs.go.go_descendants", "pypath.inputs.go.go_descendants_goose", "pypath.inputs.go.go_descendants_quickgo", "pypath.inputs.go.go_descendants_to_ancestors", "pypath.inputs.go.go_terms", "pypath.inputs.go.go_terms_goose", "pypath.inputs.go.go_terms_quickgo", "pypath.inputs.go.go_terms_solr", "pypath.inputs.gpcrdb", "pypath.inputs.gpcrdb.gpcrdb_annotations", "pypath.inputs.graphviz", "pypath.inputs.graphviz.graphviz_attrs", "pypath.inputs.guide2pharma", "pypath.inputs.guide2pharma.guide2pharma_complexes", "pypath.inputs.guide2pharma.guide2pharma_download", "pypath.inputs.guide2pharma.guide2pharma_interactions", "pypath.inputs.gutmgene", "pypath.inputs.gutmgene.GutmgeneAnnotation", "pypath.inputs.gutmgene.GutmgeneRaw", "pypath.inputs.gutmgene.gutmgene_annotations", "pypath.inputs.gutmgene.gutmgene_raw", "pypath.inputs.havugimana", "pypath.inputs.havugimana.get_havugimana", "pypath.inputs.havugimana.havugimana_complexes", "pypath.inputs.hgnc", "pypath.inputs.hgnc.hgnc_genegroups", "pypath.inputs.hippie", "pypath.inputs.hippie.hippie_interactions", "pypath.inputs.hmdb", "pypath.inputs.hmdb.common", "pypath.inputs.hmdb.common.iter", "pypath.inputs.hmdb.common.mapping", "pypath.inputs.hmdb.common.raw", "pypath.inputs.hmdb.common.table", "pypath.inputs.hmdb.metabolites", "pypath.inputs.hmdb.metabolites.iter", "pypath.inputs.hmdb.metabolites.mapping", "pypath.inputs.hmdb.metabolites.raw", "pypath.inputs.hmdb.metabolites.table", "pypath.inputs.hmdb.proteins", "pypath.inputs.hmdb.proteins.iter", "pypath.inputs.hmdb.proteins.mapping", "pypath.inputs.hmdb.proteins.raw", "pypath.inputs.hmdb.proteins.table", "pypath.inputs.hmdb.schema", "pypath.inputs.hmdb.schema.common", "pypath.inputs.hmdb.schema.common.Field", "pypath.inputs.hmdb.schema.metabolites", "pypath.inputs.hmdb.schema.proteins", "pypath.inputs.hmdb.structures", "pypath.inputs.hmdb.structures.sdf", "pypath.inputs.hmdb.visual", "pypath.inputs.hmdb.visual.show_structure", "pypath.inputs.hmdb.visual.structure_svg", "pypath.inputs.hmdb.xml", "pypath.inputs.hmdb.xml.hmdb_xml", "pypath.inputs.homologene", "pypath.inputs.homologene.get_homologene", "pypath.inputs.homologene.homologene_dict", "pypath.inputs.homologene.homologene_uniprot_dict", "pypath.inputs.hpmr", "pypath.inputs.hpmr.HpmrInteraction", "pypath.inputs.hpmr.get_hpmr", "pypath.inputs.hpmr.hpmr_annotations", "pypath.inputs.hpmr.hpmr_complexes", "pypath.inputs.hpmr.hpmr_interactions", "pypath.inputs.hpo", "pypath.inputs.hpo.hpo_annotations", "pypath.inputs.hpo.hpo_diseases", "pypath.inputs.hpo.hpo_ontology", "pypath.inputs.hpo.hpo_terms", "pypath.inputs.hprd", "pypath.inputs.hprd.get_hprd", "pypath.inputs.hprd.hprd_enzyme_substrate", "pypath.inputs.hprd.hprd_interactions", "pypath.inputs.hprd.hprd_interactions_htp", "pypath.inputs.htri", "pypath.inputs.htri.htri_interactions", "pypath.inputs.humancellmap", "pypath.inputs.humancellmap.humancellmap_annotations", "pypath.inputs.humap", "pypath.inputs.humap.humap2_complexes", "pypath.inputs.humap.humap_complexes", "pypath.inputs.humsavar", "pypath.inputs.humsavar.uniprot_variants", "pypath.inputs.huri", "pypath.inputs.huri.hi_i_interactions", "pypath.inputs.huri.hi_ii_interactions", "pypath.inputs.huri.hi_iii_old", "pypath.inputs.huri.hi_union_interactions", "pypath.inputs.huri.huri_interactions", "pypath.inputs.huri.lit_bm_13_interactions", "pypath.inputs.huri.lit_bm_17_interactions", "pypath.inputs.huri.lit_bm_interactions", "pypath.inputs.huri.rolland_hi_ii_14", "pypath.inputs.huri.vidal_hi_iii_old", "pypath.inputs.huri.yang2016_interactions", "pypath.inputs.huri.yu2011_interactions", "pypath.inputs.i3d", "pypath.inputs.i3d.get_i3d", "pypath.inputs.icellnet", "pypath.inputs.icellnet.IcellnetRecord", "pypath.inputs.icellnet.icellnet_annotations", "pypath.inputs.icellnet.icellnet_complexes", "pypath.inputs.icellnet.icellnet_interactions", "pypath.inputs.ielm", "pypath.inputs.ielm.get_ielm", "pypath.inputs.ielm.get_ielm_huge", "pypath.inputs.imweb", "pypath.inputs.imweb.get_imweb", "pypath.inputs.imweb.get_imweb_req", "pypath.inputs.innatedb", "pypath.inputs.innatedb.innatedb_interactions", "pypath.inputs.instruct", "pypath.inputs.instruct.get_instruct", "pypath.inputs.instruct.get_instruct_offsets", "pypath.inputs.intact", "pypath.inputs.intact.intact_interactions", "pypath.inputs.integrins", "pypath.inputs.integrins.get_integrins", "pypath.inputs.interpro", "pypath.inputs.interpro.interpro2go_annotations", "pypath.inputs.interpro.interpro_annotations", "pypath.inputs.interpro.interpro_entries", "pypath.inputs.interpro.interpro_xrefs", "pypath.inputs.intogen", "pypath.inputs.intogen.intogen_annotations", "pypath.inputs.ipi", "pypath.inputs.ipi.ipi_uniprot", "pypath.inputs.iptmnet", "pypath.inputs.iptmnet.IptmnetInteraction", "pypath.inputs.iptmnet.iptmnet_interactions", "pypath.inputs.italk", "pypath.inputs.italk.italk_annotations", "pypath.inputs.italk.italk_interactions", "pypath.inputs.italk.italk_raw", "pypath.inputs.kea", "pypath.inputs.kea.kea_enzyme_substrate", "pypath.inputs.kea.kea_interactions", "pypath.inputs.kegg", "pypath.inputs.kegg.KeggPathway", "pypath.inputs.kegg.kegg_dbget", "pypath.inputs.kegg.kegg_interactions", "pypath.inputs.kegg.kegg_medicus", "pypath.inputs.kegg.kegg_medicus_complexes", "pypath.inputs.kegg.kegg_medicus_interactions", "pypath.inputs.kegg.kegg_pathway_annotations", "pypath.inputs.kegg.kegg_pathway_annotations_pathwaycommons", "pypath.inputs.kegg.kegg_pathways", "pypath.inputs.kegg_api", "pypath.inputs.kegg_api.disease_to_drug", "pypath.inputs.kegg_api.disease_to_gene", "pypath.inputs.kegg_api.disease_to_pathway", "pypath.inputs.kegg_api.drug_to_disease", "pypath.inputs.kegg_api.drug_to_drug", "pypath.inputs.kegg_api.drug_to_gene", "pypath.inputs.kegg_api.drug_to_pathway", "pypath.inputs.kegg_api.gene_to_disease", "pypath.inputs.kegg_api.gene_to_drug", "pypath.inputs.kegg_api.gene_to_pathway", "pypath.inputs.kegg_api.kegg_drug_to_chebi", "pypath.inputs.kegg_api.kegg_gene_to_ncbi_geneid", "pypath.inputs.kegg_api.kegg_gene_to_uniprot", "pypath.inputs.kegg_api.pathway_to_disease", "pypath.inputs.kegg_api.pathway_to_drug", "pypath.inputs.kegg_api.pathway_to_gene", "pypath.inputs.kinasedotcom", "pypath.inputs.kinasedotcom.kinasedotcom_annotations", "pypath.inputs.kirouac2010", "pypath.inputs.kirouac2010.kirouac2010_interactions", "pypath.inputs.lambert2018", "pypath.inputs.lambert2018.lambert2018_annotations", "pypath.inputs.lambert2018.lambert2018_s1_raw", "pypath.inputs.laudanna", "pypath.inputs.laudanna.laudanna_directions", "pypath.inputs.laudanna.laudanna_effects", "pypath.inputs.li2012", "pypath.inputs.li2012.get_li2012", "pypath.inputs.li2012.li2012_dmi", "pypath.inputs.li2012.li2012_enzyme_substrate", "pypath.inputs.li2012.li2012_interactions", "pypath.inputs.lincs", "pypath.inputs.lincs.lincs_compounds", "pypath.inputs.lmpid", "pypath.inputs.lmpid.lmpid_dmi", "pypath.inputs.lmpid.lmpid_interactions", "pypath.inputs.lmpid.load_lmpid", "pypath.inputs.lncdisease", "pypath.inputs.lncdisease.lncdisease_interactions", "pypath.inputs.lncrnadb", "pypath.inputs.lncrnadb.lncrnadb_interactions", "pypath.inputs.locate", "pypath.inputs.locate.locate_localizations", "pypath.inputs.lrdb", "pypath.inputs.lrdb.LrdbAnnotation", "pypath.inputs.lrdb.lrdb_annotations", "pypath.inputs.lrdb.lrdb_interactions", "pypath.inputs.macrophage", "pypath.inputs.macrophage.macrophage_interactions", "pypath.inputs.main", "pypath.inputs.matrisome", "pypath.inputs.matrisome.matrisome_annotations", "pypath.inputs.matrixdb", "pypath.inputs.matrixdb.matrixdb_annotations", "pypath.inputs.matrixdb.matrixdb_ecm_proteins", "pypath.inputs.matrixdb.matrixdb_interactions", "pypath.inputs.matrixdb.matrixdb_membrane_proteins", "pypath.inputs.matrixdb.matrixdb_secreted_proteins", "pypath.inputs.mcam", "pypath.inputs.mcam.mcam_cell_adhesion_molecules", "pypath.inputs.membranome", "pypath.inputs.membranome.membranome_annotations", "pypath.inputs.mimp", "pypath.inputs.mimp.get_kinase_class", "pypath.inputs.mimp.mimp_enzyme_substrate", "pypath.inputs.mimp.mimp_interactions", "pypath.inputs.mir2disease", "pypath.inputs.mir2disease.mir2disease_interactions", "pypath.inputs.mirbase", "pypath.inputs.mirbase.get_mirbase_aliases", "pypath.inputs.mirbase.mirbase_ids", "pypath.inputs.mirbase.mirbase_mature", "pypath.inputs.mirbase.mirbase_mature_all", "pypath.inputs.mirbase.mirbase_precursor", "pypath.inputs.mirbase.mirbase_precursor_all", "pypath.inputs.mirbase.mirbase_precursor_to_mature", "pypath.inputs.mirdeathdb", "pypath.inputs.mirdeathdb.mirdeathdb_interactions", "pypath.inputs.mirecords", "pypath.inputs.mirecords.mirecords_interactions", "pypath.inputs.mirtarbase", "pypath.inputs.mirtarbase.mirtarbase_interactions", "pypath.inputs.mitab", "pypath.inputs.mitab.mitab_field_list", "pypath.inputs.mitab.mitab_field_uniprot", "pypath.inputs.mppi", "pypath.inputs.mppi.mppi_interactions", "pypath.inputs.msigdb", "pypath.inputs.msigdb.msigdb_annotations", "pypath.inputs.msigdb.msigdb_download", "pypath.inputs.msigdb.msigdb_download_collections", "pypath.inputs.ncrdeathdb", "pypath.inputs.ncrdeathdb.ncrdeathdb_interactions", "pypath.inputs.negatome", "pypath.inputs.negatome.negatome_interactions", "pypath.inputs.netbiol", "pypath.inputs.netbiol.arn_interactions", "pypath.inputs.netbiol.nrf2ome_interactions", "pypath.inputs.netpath", "pypath.inputs.netpath.netpath_interactions", "pypath.inputs.netpath.netpath_names", "pypath.inputs.netpath.netpath_pathway_annotations", "pypath.inputs.offsides", "pypath.inputs.offsides.offsides_side_effects", "pypath.inputs.oma", "pypath.inputs.oma.oma_orthologs", "pypath.inputs.oma.oma_table", "pypath.inputs.ontology", "pypath.inputs.ontology.listof_ontologies", "pypath.inputs.ontology.ontology", "pypath.inputs.opentargets", "pypath.inputs.opentargets.opentargets_adverse_reactions", "pypath.inputs.opentargets.opentargets_baseline_expression", "pypath.inputs.opentargets.opentargets_direct_score", "pypath.inputs.opentargets.opentargets_general", "pypath.inputs.opentargets.opentargets_indirect_score", "pypath.inputs.opm", "pypath.inputs.opm.opm_annotations", "pypath.inputs.oreganno", "pypath.inputs.oreganno.oreganno_interactions", "pypath.inputs.oreganno.oreganno_raw", "pypath.inputs.panglaodb", "pypath.inputs.panglaodb.panglaodb_annotations", "pypath.inputs.panglaodb.panglaodb_raw", "pypath.inputs.pathophenodb", "pypath.inputs.pathophenodb.DiseasePathogen", "pypath.inputs.pathophenodb.disease_pathogen_interactions", "pypath.inputs.pathwaycommons", "pypath.inputs.pathwaycommons.PathwayCommonsInteraction", "pypath.inputs.pathwaycommons.PathwayCommonsResource", "pypath.inputs.pathwaycommons.pathwaycommons_bind_interactions", "pypath.inputs.pathwaycommons.pathwaycommons_biogrid_interactions", "pypath.inputs.pathwaycommons.pathwaycommons_corum_interactions", "pypath.inputs.pathwaycommons.pathwaycommons_dip_interactions", "pypath.inputs.pathwaycommons.pathwaycommons_hprd_interactions", "pypath.inputs.pathwaycommons.pathwaycommons_inoh_interactions", "pypath.inputs.pathwaycommons.pathwaycommons_intact_interactions", "pypath.inputs.pathwaycommons.pathwaycommons_interactions", "pypath.inputs.pathwaycommons.pathwaycommons_kegg_interactions", "pypath.inputs.pathwaycommons.pathwaycommons_netpath_interactions", "pypath.inputs.pathwaycommons.pathwaycommons_panther_interactions", "pypath.inputs.pathwaycommons.pathwaycommons_phosphosite_interactions", "pypath.inputs.pathwaycommons.pathwaycommons_reactome_interactions", "pypath.inputs.pathwaycommons.pathwaycommons_wikipathways_interactions", "pypath.inputs.pazar", "pypath.inputs.pazar.pazar_interactions", "pypath.inputs.pdb", "pypath.inputs.pdb.pdb_chains", "pypath.inputs.pdb.pdb_complexes", "pypath.inputs.pdb.pdb_uniprot", "pypath.inputs.pdzbase", "pypath.inputs.pdzbase.pdzbase_interactions", "pypath.inputs.pepcyber", "pypath.inputs.pepcyber.pepcyber_details", "pypath.inputs.pepcyber.pepcyber_interactions", "pypath.inputs.pfam", "pypath.inputs.pfam.pfam_names", "pypath.inputs.pfam.pfam_pdb", "pypath.inputs.pfam.pfam_regions", "pypath.inputs.pfam.pfam_uniprot", "pypath.inputs.pharos", "pypath.inputs.pharos.pharos_diseases", "pypath.inputs.pharos.pharos_expression", "pypath.inputs.pharos.pharos_general", "pypath.inputs.pharos.pharos_gtex", "pypath.inputs.pharos.pharos_ligands", "pypath.inputs.pharos.pharos_orthologs", "pypath.inputs.pharos.pharos_targets", "pypath.inputs.pharos.pharos_xrefs", "pypath.inputs.phobius", "pypath.inputs.phobius.phobius_annotations", "pypath.inputs.phosphatome", "pypath.inputs.phosphatome.phosphatome_annotations", "pypath.inputs.phosphoelm", "pypath.inputs.phosphoelm.phosphoelm_enzyme_substrate", "pypath.inputs.phosphoelm.phosphoelm_interactions", "pypath.inputs.phosphoelm.phosphoelm_kinases", "pypath.inputs.phosphonetworks", "pypath.inputs.phosphonetworks.phosphonetworks_enzyme_substrate", "pypath.inputs.phosphonetworks.phosphonetworks_interactions", "pypath.inputs.phosphopoint", "pypath.inputs.phosphopoint.phosphopoint_directions", "pypath.inputs.phosphopoint.phosphopoint_interactions", "pypath.inputs.phosphosite", "pypath.inputs.phosphosite.phosphosite_directions", "pypath.inputs.phosphosite.phosphosite_enzyme_substrate", "pypath.inputs.phosphosite.phosphosite_interactions", "pypath.inputs.phosphosite.phosphosite_interactions_all", "pypath.inputs.phosphosite.phosphosite_interactions_curated", "pypath.inputs.phosphosite.phosphosite_interactions_new", "pypath.inputs.phosphosite.phosphosite_interactions_noref", "pypath.inputs.phosphosite.phosphosite_ptm_orthology", "pypath.inputs.phosphosite.phosphosite_ptms", "pypath.inputs.phosphosite.phosphosite_regsites", "pypath.inputs.phosphosite.phosphosite_regsites_one_organism", "pypath.inputs.phosphosite.regsites_tab", "pypath.inputs.pisa", "pypath.inputs.pisa.PisaBond", "pypath.inputs.pisa.pisa_bonds", "pypath.inputs.pisa.pisa_interfaces", "pypath.inputs.pro", "pypath.inputs.pro.get_pro", "pypath.inputs.pro.pro_mapping", "pypath.inputs.progeny", "pypath.inputs.progeny.progeny_annotations", "pypath.inputs.progeny.progeny_raw", "pypath.inputs.proteinatlas", "pypath.inputs.proteinatlas.get_proteinatlas", "pypath.inputs.proteinatlas.proteinatlas_annotations", "pypath.inputs.proteinatlas.proteinatlas_secretome_annotations", "pypath.inputs.proteinatlas.proteinatlas_subcellular_annotations", "pypath.inputs.proteins", "pypath.inputs.proteins.variants", "pypath.inputs.protmapper", "pypath.inputs.protmapper.get_protmapper", "pypath.inputs.protmapper.protmapper_enzyme_substrate", "pypath.inputs.protmapper.protmapper_interactions", "pypath.inputs.pubchem", "pypath.inputs.pubchem.pubchem_mapping", "pypath.inputs.pubmed", "pypath.inputs.pubmed.get_pmid", "pypath.inputs.pubmed.get_pubmeds", "pypath.inputs.pubmed.only_pmids", "pypath.inputs.pubmed.open_pubmed", "pypath.inputs.pubmed.pmids_dict", "pypath.inputs.pubmed.pmids_list", "pypath.inputs.ramilowski2015", "pypath.inputs.ramilowski2015.ramilowski_interactions", "pypath.inputs.ramilowski2015.ramilowski_locations", "pypath.inputs.ramp", "pypath.inputs.ramp.ramp_id_types", "pypath.inputs.ramp.ramp_id_types_2", "pypath.inputs.ramp.ramp_list_tables", "pypath.inputs.ramp.ramp_mapping", "pypath.inputs.ramp.ramp_raw", "pypath.inputs.ramp.ramp_show_tables", "pypath.inputs.rdata", "pypath.inputs.reaction", "pypath.inputs.reaction.acsn_biopax", "pypath.inputs.reaction.acsn_interactions_2", "pypath.inputs.reaction.get_acsn_effects", "pypath.inputs.reaction.get_controls", "pypath.inputs.reaction.get_interactions", "pypath.inputs.reaction.get_reactions", "pypath.inputs.reaction.get_soup", "pypath.inputs.reaction.panther_biopax", "pypath.inputs.reaction.panther_interactions", "pypath.inputs.reaction.pid_biopax", "pypath.inputs.reaction.pid_interactions", "pypath.inputs.reaction.process_complex", "pypath.inputs.reaction.process_controls", "pypath.inputs.reaction.process_reactions", "pypath.inputs.reaction.reactions_biopax", "pypath.inputs.reaction.reactome_biopax", "pypath.inputs.reaction.reactome_bs", "pypath.inputs.reaction.reactome_interactions", "pypath.inputs.reaction.reactome_sbml", "pypath.inputs.reactome", "pypath.inputs.reactome.reactome_chebis", "pypath.inputs.reactome.reactome_pathway_relations", "pypath.inputs.reactome.reactome_pathways", "pypath.inputs.reactome.reactome_uniprots", "pypath.inputs.scconnect", "pypath.inputs.scconnect.scconnect_annotations", "pypath.inputs.scconnect.scconnect_complexes", "pypath.inputs.scconnect.scconnect_interactions", "pypath.inputs.science", "pypath.inputs.science.science_download", "pypath.inputs.sider", "pypath.inputs.sider.SiderDrug", "pypath.inputs.sider.SiderSideeffect", "pypath.inputs.sider.SiderSideeffectMeddra", "pypath.inputs.sider.SiderSideeffetFrequency", "pypath.inputs.sider.sider_drug_names", "pypath.inputs.sider.sider_meddra_side_effects", "pypath.inputs.sider.sider_side_effect_frequencies", "pypath.inputs.sider.sider_side_effects", "pypath.inputs.signalink", "pypath.inputs.signalink.signalink_annotations", "pypath.inputs.signalink.signalink_function_annotations", "pypath.inputs.signalink.signalink_interactions", "pypath.inputs.signalink.signalink_pathway_annotations", "pypath.inputs.signor", "pypath.inputs.signor.signor_complexes", "pypath.inputs.signor.signor_enzyme_substrate", "pypath.inputs.signor.signor_interactions", "pypath.inputs.signor.signor_pathway_annotations", "pypath.inputs.signor.signor_pathways", "pypath.inputs.signor.signor_protein_families", "pypath.inputs.spike", "pypath.inputs.spike.spike_complexes", "pypath.inputs.spike.spike_interactions", "pypath.inputs.stitch", "pypath.inputs.stitch.stitch_actions_interactions", "pypath.inputs.stitch.stitch_links_interactions", "pypath.inputs.string", "pypath.inputs.string.string_effects", "pypath.inputs.string.string_links_interactions", "pypath.inputs.string.string_physical_interactions", "pypath.inputs.string.string_species", "pypath.inputs.surfaceome", "pypath.inputs.surfaceome.surfaceome_annotations", "pypath.inputs.switches_elm", "pypath.inputs.switches_elm.get_switches_elm", "pypath.inputs.talklr", "pypath.inputs.talklr.talklr_annotations", "pypath.inputs.talklr.talklr_interactions", "pypath.inputs.talklr.talklr_raw", "pypath.inputs.tcdb", "pypath.inputs.tcdb.tcdb_annotations", "pypath.inputs.tcdb.tcdb_classes", "pypath.inputs.tcdb.tcdb_families", "pypath.inputs.tfcensus", "pypath.inputs.tfcensus.tfcensus_annotations", "pypath.inputs.threedcomplex", "pypath.inputs.threedcomplex.threedcomplex_chains", "pypath.inputs.threedcomplex.threedcomplex_complexes", "pypath.inputs.threedcomplex.threedcomplex_contacts", "pypath.inputs.threedcomplex.threedcomplex_ddi", "pypath.inputs.threedcomplex.threedcomplex_nresidues", "pypath.inputs.threedid", "pypath.inputs.threedid.get_3did", "pypath.inputs.threedid.get_3did_ddi", "pypath.inputs.threedid.get_3did_dmi", "pypath.inputs.threedid.process_3did_dmi", "pypath.inputs.topdb", "pypath.inputs.topdb.topdb_annotations", "pypath.inputs.transmir", "pypath.inputs.transmir.transmir_interactions", "pypath.inputs.trip", "pypath.inputs.trip.take_a_trip", "pypath.inputs.trip.trip_find_uniprot", "pypath.inputs.trip.trip_get_uniprot", "pypath.inputs.trip.trip_interactions", "pypath.inputs.trip.trip_process", "pypath.inputs.trip.trip_process_table", "pypath.inputs.trrust", "pypath.inputs.trrust.trrust_human", "pypath.inputs.trrust.trrust_interactions", "pypath.inputs.trrust.trrust_mouse", "pypath.inputs.twosides", "pypath.inputs.twosides.twosides_interactions", "pypath.inputs.unichem", "pypath.inputs.unichem.info", "pypath.inputs.unichem.unichem_info", "pypath.inputs.unichem.unichem_mapping", "pypath.inputs.unichem.unichem_sources", "pypath.inputs.uniprot", "pypath.inputs.uniprot.Taxon", "pypath.inputs.uniprot.UniprotQuery", "pypath.inputs.uniprot.UniprotRecordHistory", "pypath.inputs.uniprot.deleted_uniprot_genesymbol", "pypath.inputs.uniprot.get_uniprot_sec", "pypath.inputs.uniprot.idmapping_idtypes", "pypath.inputs.uniprot.protein_datasheet", "pypath.inputs.uniprot.query_builder", "pypath.inputs.uniprot.swissprot_deleted", "pypath.inputs.uniprot.trembl_deleted", "pypath.inputs.uniprot.uniprot_data", "pypath.inputs.uniprot.uniprot_deleted", "pypath.inputs.uniprot.uniprot_families", "pypath.inputs.uniprot.uniprot_history", "pypath.inputs.uniprot.uniprot_history_recent_datasheet", "pypath.inputs.uniprot.uniprot_keywords", "pypath.inputs.uniprot.uniprot_locations", "pypath.inputs.uniprot.uniprot_ncbi_taxids", "pypath.inputs.uniprot.uniprot_ncbi_taxids_2", "pypath.inputs.uniprot.uniprot_preprocess", "pypath.inputs.uniprot.uniprot_query", "pypath.inputs.uniprot.uniprot_recent_version", "pypath.inputs.uniprot.uniprot_taxonomy", "pypath.inputs.uniprot.uniprot_tissues", "pypath.inputs.uniprot.uniprot_topology", "pypath.inputs.uniprot.valid_uniprot", "pypath.inputs.uniprot_db", "pypath.inputs.uniprot_db.all_swissprots", "pypath.inputs.uniprot_db.all_trembls", "pypath.inputs.uniprot_db.all_uniprots", "pypath.inputs.uniprot_db.get_db", "pypath.inputs.uniprot_db.init_db", "pypath.inputs.uniprot_db.is_swissprot", "pypath.inputs.uniprot_db.is_trembl", "pypath.inputs.uniprot_db.is_uniprot", "pypath.inputs.wang", "pypath.inputs.wang.cui_interactions", "pypath.inputs.wang.hsn_interactions", "pypath.inputs.wang.wang_annotations", "pypath.inputs.wang.wang_interactions", "pypath.inputs.wojtowicz2020", "pypath.inputs.wojtowicz2020.wojtowicz2020_interactions", "pypath.inputs.wojtowicz2020.wojtowicz2020_raw", "pypath.inputs.zhong2015", "pypath.inputs.zhong2015.zhong2015_annotations", "pypath.internals", "pypath.internals.annot_formats", "pypath.internals.annot_formats.AnnotDef", "pypath.internals.annot_formats.AnnotDefKey", "pypath.internals.annot_formats.AnnotOp", "pypath.internals.annot_formats.AnnotationGroup", "pypath.internals.input_formats", "pypath.internals.input_formats.ArrayMapping", "pypath.internals.input_formats.BiomartMapping", "pypath.internals.input_formats.FileMapping", "pypath.internals.input_formats.HmdbMapping", "pypath.internals.input_formats.MappingInput", "pypath.internals.input_formats.NetworkInput", "pypath.internals.input_formats.PickleMapping", "pypath.internals.input_formats.ProMapping", "pypath.internals.input_formats.RampMapping", "pypath.internals.input_formats.ReadList", "pypath.internals.input_formats.UnichemMapping", "pypath.internals.input_formats.UniprotListMapping", "pypath.internals.input_formats.UniprotMapping", "pypath.internals.intera", "pypath.internals.intera.Complex", "pypath.internals.intera.Domain", "pypath.internals.intera.DomainDomain", "pypath.internals.intera.DomainMotif", "pypath.internals.intera.Interface", "pypath.internals.intera.Motif", "pypath.internals.intera.Ptm", "pypath.internals.intera.Regulation", "pypath.internals.intera.Residue", "pypath.internals.license", "pypath.internals.license.License", "pypath.internals.license.LicenseAttrib", "pypath.internals.license.LicenseFeature", "pypath.internals.license.LicensePurpose", "pypath.internals.license.LicenseSharing", "pypath.internals.maps", "pypath.internals.refs", "pypath.internals.refs.Reference", "pypath.internals.refs.get_pubmed_data", "pypath.internals.resource", "pypath.internals.resource.AbstractResource", "pypath.internals.resource.EnzymeSubstrateResource", "pypath.internals.resource.EnzymeSubstrateResourceKey", "pypath.internals.resource.NetworkDataset", "pypath.internals.resource.NetworkResource", "pypath.internals.resource.NetworkResourceKey", "pypath.internals.resource.ResourceAttributes", "pypath.legacy", "pypath.legacy.db_categories", "pypath.legacy.db_categories.get_categories", "pypath.legacy.db_categories.get_category", "pypath.log", "pypath.resources", "pypath.resources.controller", "pypath.resources.controller.ResourceController", "pypath.resources.data", "pypath.resources.data_formats", "pypath.resources.data_formats.activity_flow", "pypath.resources.data_formats.enzyme_substrate", "pypath.resources.data_formats.interaction", "pypath.resources.data_formats.interaction_htp", "pypath.resources.data_formats.pathway_bad", "pypath.resources.data_formats.reaction_pc", "pypath.resources.data_formats.transcription_deprecated", "pypath.resources.data_formats.transcription_onebyone", "pypath.resources.get_controller", "pypath.resources.licenses", "pypath.resources.licenses.Licenses", "pypath.resources.network", "pypath.resources.network.choose_dataset", "pypath.resources.network.dataset_priority", "pypath.resources.network.dorothea_expand_levels", "pypath.resources.urls", "pypath.share", "pypath.share.cache", "pypath.share.cache.cache_item", "pypath.share.cache.cache_path", "pypath.share.cache.default_cachedir", "pypath.share.cache.get_cachedir", "pypath.share.common", "pypath.share.constants", "pypath.share.curl", "pypath.share.curl.Curl", "pypath.share.curl.FileOpener", "pypath.share.curl.RemoteFile", "pypath.share.curl.cache_delete_off", "pypath.share.curl.cache_delete_on", "pypath.share.curl.cache_off", "pypath.share.curl.cache_on", "pypath.share.curl.cache_print_off", "pypath.share.curl.cache_print_on", "pypath.share.curl.debug_off", "pypath.share.curl.debug_on", "pypath.share.curl.dryrun_off", "pypath.share.curl.dryrun_on", "pypath.share.curl.is_url", "pypath.share.curl.preserve_off", "pypath.share.curl.preserve_on", "pypath.share.progress", "pypath.share.progress.Progress", "pypath.share.session", "pypath.share.settings", "pypath.utils", "pypath.utils.go", "pypath.utils.go.GOAnnotation", "pypath.utils.go.GOCustomAnnotation", "pypath.utils.go.GeneOntology", "pypath.utils.go.annotate", "pypath.utils.go.get_db", "pypath.utils.go.init_db", "pypath.utils.go.load_go", "pypath.utils.mapping", "pypath.utils.mapping.MapReader", "pypath.utils.mapping.Mapper", "pypath.utils.mapping.MappingTable", "pypath.utils.mapping.MappingTableKey", "pypath.utils.mapping.UNIPROT_ID_TYPES", "pypath.utils.mapping.get_mapper", "pypath.utils.mapping.guess_type", "pypath.utils.mapping.id_from_label", "pypath.utils.mapping.id_from_label0", "pypath.utils.mapping.id_types", "pypath.utils.mapping.init", "pypath.utils.mapping.label", "pypath.utils.mapping.map_name", "pypath.utils.mapping.map_name0", "pypath.utils.mapping.map_names", "pypath.utils.mapping.mapping_tables", "pypath.utils.mapping.translation_df", "pypath.utils.mapping.translation_dict", "pypath.utils.metabo", "pypath.utils.orthology", "pypath.utils.orthology.EnsemblOrtholog", "pypath.utils.orthology.EnsemblOrthology", "pypath.utils.orthology.HomologeneOrtholog", "pypath.utils.orthology.HomologeneOrthology", "pypath.utils.orthology.OmaOrtholog", "pypath.utils.orthology.OmaOrthology", "pypath.utils.orthology.OrthologBase", "pypath.utils.orthology.OrthologMeta", "pypath.utils.orthology.OrthologyManager", "pypath.utils.orthology.OrthologyTableKey", "pypath.utils.orthology.ProteinOrthology", "pypath.utils.orthology.Proteomes", "pypath.utils.orthology.PtmOrthology", "pypath.utils.orthology.SequenceContainer", "pypath.utils.orthology.get_df", "pypath.utils.orthology.get_dict", "pypath.utils.orthology.get_manager", "pypath.utils.orthology.init", "pypath.utils.orthology.translate", "pypath.utils.orthology.translate_df", "pypath.utils.pdb", "pypath.utils.pdb.Residue", "pypath.utils.pdb.ResidueMapper", "pypath.utils.pdb.Segment", "pypath.utils.pdb.residue_pdb", "pypath.utils.proteomicsdb", "pypath.utils.proteomicsdb.ProteomicsDB", "pypath.utils.pyreact", "pypath.utils.pyreact.AttributeHandler", "pypath.utils.pyreact.BioPaxReader", "pypath.utils.pyreact.Complex", "pypath.utils.pyreact.ComplexVariations", "pypath.utils.pyreact.Control", "pypath.utils.pyreact.Entity", "pypath.utils.pyreact.EntitySet", "pypath.utils.pyreact.Intersecting", "pypath.utils.pyreact.Protein", "pypath.utils.pyreact.ProteinFamily", "pypath.utils.pyreact.PyReact", "pypath.utils.pyreact.Reaction", "pypath.utils.pyreact.ReactionSide", "pypath.utils.pyreact.Reference", "pypath.utils.reflists", "pypath.utils.reflists.ReferenceListManager", "pypath.utils.reflists.check", "pypath.utils.reflists.get_manager", "pypath.utils.reflists.get_reflist", "pypath.utils.reflists.init", "pypath.utils.reflists.is_not", "pypath.utils.reflists.select", "pypath.utils.residues", "pypath.utils.residues.ResidueMapper", "pypath.utils.seq", "pypath.utils.seq.Pfam", "pypath.utils.seq.Resource", "pypath.utils.seq.Seq", "pypath.utils.seq.get_isoforms", "pypath.utils.seq.read_fasta", "pypath.utils.seq.swissprot_seq", "pypath.utils.taxonomy", "pypath.utils.taxonomy.ensure_common_name", "pypath.utils.taxonomy.ensure_ensembl_name", "pypath.utils.taxonomy.ensure_latin_name", "pypath.utils.taxonomy.ensure_ncbi_tax_id", "pypath.utils.taxonomy.get_db", "pypath.utils.taxonomy.init_db", "pypath.utils.taxonomy.short_latin_names", "pypath.utils.taxonomy.shorten_latin_name", "pypath.utils.taxonomy.taxid_from_common_name", "pypath.utils.taxonomy.taxid_from_dbptm_taxon_name", "pypath.utils.taxonomy.taxid_from_ensembl_name", "pypath.utils.taxonomy.taxid_from_latin_name", "pypath.utils.taxonomy.taxid_from_nonstandard", "pypath.utils.taxonomy.uniprot_taxid", "pypath.utils.unichem", "pypath.utils.unichem.Unichem", "pypath.utils.uniprot", "pypath.utils.uniprot.UniprotProtein", "pypath.utils.uniprot.ac", "pypath.utils.uniprot.activity_regulation", "pypath.utils.uniprot.activity_regulation_with_xrefs", "pypath.utils.uniprot.alternative_products", "pypath.utils.uniprot.alternative_products_with_xrefs", "pypath.utils.uniprot.browse", "pypath.utils.uniprot.catalytic_activity", "pypath.utils.uniprot.catalytic_activity_with_xrefs", "pypath.utils.uniprot.collect", "pypath.utils.uniprot.databases", "pypath.utils.uniprot.disease", "pypath.utils.uniprot.disease_with_xrefs", "pypath.utils.uniprot.ec", "pypath.utils.uniprot.features_table", "pypath.utils.uniprot.full_name", "pypath.utils.uniprot.function", "pypath.utils.uniprot.function_genecards", "pypath.utils.uniprot.function_or_genecards", "pypath.utils.uniprot.function_with_genecards", "pypath.utils.uniprot.function_with_xrefs", "pypath.utils.uniprot.genesymbol", "pypath.utils.uniprot.has_tag", "pypath.utils.uniprot.id", "pypath.utils.uniprot.info", "pypath.utils.uniprot.info_section", "pypath.utils.uniprot.interaction", "pypath.utils.uniprot.interaction_with_xrefs", "pypath.utils.uniprot.is_reviewed", "pypath.utils.uniprot.itertag", "pypath.utils.uniprot.keywords", "pypath.utils.uniprot.keywords_with_xrefs", "pypath.utils.uniprot.length", "pypath.utils.uniprot.lengths", "pypath.utils.uniprot.load", "pypath.utils.uniprot.organism", "pypath.utils.uniprot.print_features", "pypath.utils.uniprot.ptm", "pypath.utils.uniprot.ptm_with_xrefs", "pypath.utils.uniprot.query", "pypath.utils.uniprot.reload", "pypath.utils.uniprot.remove_xrefs", "pypath.utils.uniprot.sequence", "pypath.utils.uniprot.sequence_caution", "pypath.utils.uniprot.sequence_caution_with_xrefs", "pypath.utils.uniprot.similarity", "pypath.utils.uniprot.similarity_with_xrefs", "pypath.utils.uniprot.subcellular_location", "pypath.utils.uniprot.subcellular_location_with_xrefs", "pypath.utils.uniprot.subunit", "pypath.utils.uniprot.subunit_with_xrefs", "pypath.utils.uniprot.tissue_specificity", "pypath.utils.uniprot.tissue_specificity_with_xrefs", "pypath.utils.uniprot.update_databases", "pypath.utils.uniprot.update_info", "pypath.utils.uniprot.web_resource", "pypath.utils.uniprot.web_resource_with_xrefs", "pypath.utils.uniprot.weight", "pypath.utils.uniprot.weights", "pypath.visual", "pypath.visual.drawing", "pypath.visual.drawing.InterSet", "pypath.visual.drawing.Plot", "pypath.visual.igraph_drawing", "pypath.visual.igraph_drawing.AbstractCairoGraphDrawer", "pypath.visual.igraph_drawing.ArrowEdgeDrawer", "pypath.visual.igraph_drawing.DefaultGraphDrawerFFsupport", "pypath.visual.igraph_drawing.DefaultVertexDrawer", "pypath.visual.igraph_drawing.TextDrawer", "pypath.visual.igraph_drawing.edge", "pypath.visual.igraph_drawing.edge.AbstractEdgeDrawer", "pypath.visual.igraph_drawing.edge.AlphaVaryingEdgeDrawer", "pypath.visual.igraph_drawing.edge.ArrowEdgeDrawer", "pypath.visual.igraph_drawing.edge.DarkToLightEdgeDrawer", "pypath.visual.igraph_drawing.edge.LightToDarkEdgeDrawer", "pypath.visual.igraph_drawing.edge.TaperedEdgeDrawer", "pypath.visual.igraph_drawing.vertex", "pypath.visual.igraph_drawing.vertex.AbstractCairoDrawer", "pypath.visual.igraph_drawing.vertex.AbstractCairoVertexDrawer", "pypath.visual.igraph_drawing.vertex.AbstractDrawer", "pypath.visual.igraph_drawing.vertex.AbstractVertexDrawer", "pypath.visual.igraph_drawing.vertex.DefaultVertexDrawer", "Contents", "Welcome to pypath!", "The pypath book", "Reference", "Release history", "Webservice"], "terms": {"i": [0, 3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 121, 122, 123, 126, 127, 132, 133, 135, 136, 137, 139, 145, 147, 163, 164, 165, 166, 167, 178, 179, 204, 212, 213, 224, 230, 233, 236, 249, 252, 294, 302, 305, 306, 344, 345, 346, 347, 348, 350, 352, 353, 355, 357, 371, 384, 406, 407, 408, 411, 427, 428, 442, 443, 447, 448, 452, 453, 471, 474, 498, 505, 511, 517, 534, 540, 550, 553, 596, 604, 648, 649, 650, 671, 672, 673, 674, 675, 685, 688, 689, 707, 718, 727, 757, 759, 778, 781, 791, 794, 829, 830, 831, 832, 836, 845, 854, 857, 863, 873, 908, 909, 910, 913, 915, 918, 928, 940, 941, 942, 945, 955, 956, 957, 958, 960, 967, 971, 972, 973, 974, 977, 978, 985, 986, 987, 988, 996, 997, 999, 1008, 1018, 1019, 1025, 1036, 1037, 1039, 1040, 1041, 1042, 1043, 1044, 1045, 1046, 1047, 1048, 1050, 1051, 1053, 1058, 1060, 1066, 1067, 1068, 1069, 1078, 1079, 1080, 1081, 1086, 1087, 1088, 1089, 1090, 1094, 1095, 1096, 1098, 1099, 1100, 1101, 1104, 1105, 1107, 1109, 1112, 1115, 1117, 1119, 1122, 1126, 1127, 1129, 1130, 1141, 1146, 1153, 1161, 1163, 1177, 1188, 1199, 1229, 1233, 1234, 1235, 1236, 1237, 1238, 1239, 1241, 1243, 1244, 1245, 1246, 1249, 1250], "python": [0, 192, 448, 453, 1112, 1177, 1199, 1246, 1247, 1249, 1250], "modul": [0, 1, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 94, 97, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 120, 128, 132, 133, 135, 139, 142, 145, 150, 153, 179, 192, 294, 395, 438, 441, 446, 451, 454, 551, 596, 778, 890, 953, 958, 960, 967, 971, 973, 994, 1001, 1006, 1010, 1019, 1027, 1030, 1031, 1039, 1040, 1041, 1042, 1043, 1044, 1045, 1046, 1047, 1048, 1050, 1051, 1056, 1058, 1059, 1060, 1063, 1065, 1067, 1071, 1076, 1102, 1103, 1112, 1177, 1199, 1222, 1226, 1239, 1245, 1248, 1249, 1250], "build": [0, 30, 126, 127, 134, 139, 145, 915, 958, 1066, 1089, 1245, 1246, 1249], "molecular": [0, 30, 100, 121, 122, 132, 133, 134, 135, 139, 145, 441, 446, 451, 553, 554, 555, 649, 650, 863, 958, 974, 1163, 1220, 1221, 1245, 1246, 1249], "biologi": [0, 1246, 1247], "databas": [0, 3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 118, 119, 120, 122, 127, 128, 131, 132, 133, 135, 139, 145, 151, 155, 168, 169, 170, 202, 204, 205, 207, 211, 212, 213, 214, 225, 226, 227, 228, 229, 230, 231, 232, 233, 256, 258, 260, 261, 270, 272, 273, 277, 285, 312, 314, 316, 331, 332, 333, 334, 335, 336, 337, 345, 346, 347, 348, 350, 352, 353, 355, 357, 382, 384, 389, 390, 429, 430, 467, 472, 479, 534, 536, 545, 553, 554, 555, 564, 611, 627, 654, 663, 665, 666, 674, 679, 680, 713, 714, 720, 723, 727, 774, 790, 791, 792, 794, 795, 833, 834, 835, 836, 875, 877, 878, 879, 890, 898, 901, 910, 958, 963, 968, 974, 1003, 1004, 1013, 1015, 1016, 1036, 1062, 1063, 1066, 1149, 1163, 1245, 1249, 1250], "With": [0, 1119, 1122, 1127, 1246], "you": [0, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 127, 135, 139, 145, 213, 441, 442, 446, 447, 451, 452, 505, 553, 554, 555, 649, 758, 759, 794, 958, 972, 1008, 1036, 1037, 1040, 1046, 1051, 1060, 1067, 1078, 1087, 1112, 1115, 1229, 1245, 1248, 1250], "can": [0, 3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 96, 122, 127, 131, 132, 133, 135, 139, 145, 190, 213, 234, 441, 443, 446, 448, 451, 453, 509, 553, 554, 555, 669, 754, 794, 854, 857, 858, 909, 915, 918, 928, 957, 958, 972, 974, 978, 1008, 1030, 1036, 1058, 1060, 1066, 1067, 1078, 1079, 1080, 1087, 1089, 1091, 1094, 1096, 1098, 1105, 1108, 1115, 1169, 1226, 1229, 1233, 1234, 1235, 1236, 1237, 1238, 1241, 1243, 1244, 1246, 1247, 1248, 1249, 1250], "access": [0, 97, 294, 355, 400, 401, 402, 406, 407, 408, 410, 411, 412, 414, 415, 416, 417, 448, 453, 480, 505, 716, 933, 972, 1019, 1051, 1058, 1060, 1067, 1078, 1080, 1102, 1115, 1245, 1246, 1249], "process": [0, 3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 128, 131, 139, 145, 157, 179, 184, 185, 199, 201, 220, 222, 272, 326, 347, 348, 353, 424, 441, 442, 443, 446, 447, 448, 451, 452, 453, 472, 483, 484, 501, 502, 552, 577, 584, 585, 596, 629, 648, 746, 749, 787, 791, 800, 812, 815, 840, 844, 845, 873, 893, 895, 909, 912, 913, 915, 918, 928, 945, 947, 955, 958, 994, 1008, 1029, 1030, 1036, 1058, 1066, 1067, 1112, 1115, 1124, 1246, 1249], "combin": [0, 3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 105, 131, 133, 139, 346, 347, 348, 350, 352, 353, 553, 854, 857, 1124, 1126, 1246, 1247, 1250], "more": [0, 3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 122, 126, 132, 135, 139, 145, 179, 182, 184, 185, 190, 191, 275, 294, 366, 384, 406, 411, 781, 794, 835, 904, 906, 909, 915, 918, 928, 945, 1008, 1058, 1067, 1078, 1079, 1080, 1087, 1089, 1091, 1094, 1096, 1104, 1105, 1108, 1112, 1115, 1124, 1161, 1172, 1202, 1233, 1234, 1235, 1236, 1237, 1238, 1246, 1247, 1249, 1250], "than": [0, 128, 145, 184, 185, 384, 441, 446, 451, 781, 835, 1066, 1067, 1068, 1246, 1247, 1250], "170": 0, "public": [0, 346, 352, 811, 945], "resourc": [0, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 98, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 132, 133, 135, 139, 145, 224, 291, 292, 294, 346, 347, 348, 350, 352, 353, 394, 474, 511, 688, 697, 787, 863, 873, 904, 905, 955, 956, 958, 965, 1036, 1066, 1067, 1078, 1080, 1081, 1087, 1089, 1091, 1093, 1095, 1096, 1139, 1245, 1246, 1249, 1250], "interact": [0, 30, 32, 126, 127, 128, 132, 133, 139, 145, 155, 157, 158, 184, 185, 199, 201, 204, 205, 211, 213, 214, 222, 229, 230, 232, 233, 239, 245, 260, 261, 277, 281, 291, 292, 308, 309, 312, 314, 318, 319, 325, 340, 345, 346, 347, 348, 349, 350, 351, 352, 353, 355, 358, 363, 371, 376, 424, 472, 483, 484, 496, 497, 501, 502, 503, 504, 505, 517, 524, 527, 552, 553, 555, 564, 589, 590, 594, 595, 596, 627, 637, 639, 641, 654, 656, 657, 679, 711, 713, 714, 734, 746, 748, 749, 750, 753, 775, 787, 812, 815, 825, 840, 854, 857, 858, 878, 893, 894, 895, 898, 901, 944, 947, 965, 973, 974, 992, 1008, 1014, 1015, 1016, 1115, 1245, 1246, 1249], "network": [0, 30, 98, 126, 134, 139, 199, 551, 857, 997, 1008, 1226, 1245, 1246, 1249], "includ": [0, 6, 30, 135, 139, 145, 150, 157, 188, 190, 191, 194, 211, 213, 214, 222, 225, 249, 260, 261, 340, 349, 351, 363, 403, 405, 424, 443, 448, 453, 668, 669, 718, 734, 857, 858, 894, 909, 915, 918, 928, 960, 967, 971, 1008, 1013, 1015, 1016, 1058, 1060, 1087, 1089, 1091, 1094, 1096, 1100, 1101, 1104, 1115, 1247, 1249, 1250], "annot": [0, 132, 133, 135, 139, 179, 203, 207, 211, 225, 226, 231, 241, 243, 280, 285, 305, 324, 356, 357, 375, 398, 403, 405, 406, 407, 408, 411, 477, 494, 531, 532, 536, 577, 648, 650, 788, 823, 847, 873, 955, 957, 958, 974, 1058, 1059, 1063, 1064, 1112, 1245, 1246, 1249], "about": [0, 3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 100, 128, 131, 135, 139, 145, 151, 152, 345, 355, 366, 382, 430, 533, 713, 721, 722, 723, 724, 725, 726, 727, 728, 753, 781, 835, 903, 904, 1043, 1044, 1053, 1060, 1067, 1068, 1078, 1112, 1161, 1172, 1245, 1246, 1250], "function": [0, 2, 77, 96, 97, 99, 122, 125, 132, 135, 138, 139, 144, 153, 154, 156, 159, 162, 172, 174, 177, 179, 183, 186, 192, 198, 200, 202, 204, 206, 208, 210, 212, 215, 217, 223, 235, 242, 246, 248, 256, 259, 262, 267, 268, 269, 271, 274, 276, 279, 282, 284, 286, 290, 293, 295, 297, 301, 304, 307, 311, 317, 320, 323, 327, 330, 338, 343, 354, 361, 365, 367, 372, 374, 379, 381, 383, 385, 388, 391, 396, 418, 420, 422, 426, 431, 434, 436, 439, 441, 444, 446, 449, 451, 459, 461, 464, 466, 470, 474, 476, 481, 486, 488, 490, 493, 495, 508, 510, 515, 518, 521, 523, 526, 528, 530, 535, 537, 539, 542, 546, 549, 559, 576, 578, 580, 583, 586, 591, 593, 597, 599, 601, 603, 607, 610, 612, 618, 620, 622, 626, 628, 636, 638, 640, 642, 645, 647, 651, 653, 655, 658, 662, 664, 667, 670, 676, 678, 681, 684, 687, 704, 706, 710, 712, 715, 720, 729, 731, 733, 737, 740, 743, 756, 758, 759, 760, 763, 766, 771, 773, 777, 779, 786, 789, 797, 817, 822, 826, 828, 835, 837, 842, 849, 852, 855, 857, 860, 862, 863, 864, 868, 872, 874, 880, 885, 887, 889, 896, 900, 902, 907, 909, 915, 918, 928, 934, 943, 945, 948, 951, 955, 958, 990, 1002, 1006, 1022, 1028, 1029, 1035, 1036, 1057, 1065, 1066, 1067, 1070, 1071, 1078, 1080, 1085, 1094, 1105, 1106, 1112, 1128, 1138, 1145, 1162, 1172, 1224, 1229, 1246, 1247, 1248, 1249, 1250], "local": [0, 87, 157, 225, 226, 228, 231, 587, 596, 840, 945, 1066, 1246, 1247, 1249, 1250], "structur": [0, 135, 362, 442, 447, 452, 462, 463, 524, 534, 707, 709, 759, 877, 878, 909, 915, 918, 928, 973, 1108, 1115, 1161, 1241, 1243, 1244, 1245, 1246, 1249], "other": [0, 3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 96, 122, 127, 128, 132, 135, 139, 145, 266, 408, 411, 441, 446, 451, 479, 665, 666, 717, 718, 719, 754, 958, 960, 963, 967, 968, 970, 971, 974, 1012, 1036, 1060, 1067, 1081, 1089, 1112, 1115, 1124, 1141, 1149, 1246, 1250], "properti": [0, 132, 133, 145, 355, 909, 974, 999, 1066, 1068, 1087, 1089, 1091, 1094, 1096, 1100, 1101, 1104, 1163, 1172, 1233, 1234, 1235, 1236, 1237, 1238, 1241, 1243, 1244, 1247], "gene": [0, 3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 135, 139, 145, 187, 188, 190, 191, 204, 205, 207, 247, 260, 261, 285, 302, 303, 306, 325, 392, 393, 394, 429, 430, 536, 561, 565, 567, 568, 569, 571, 572, 575, 627, 637, 639, 641, 648, 649, 650, 665, 666, 682, 683, 713, 754, 764, 765, 787, 790, 791, 888, 898, 911, 1058, 1059, 1060, 1061, 1064, 1066, 1067, 1073, 1074, 1077, 1078, 1080, 1089, 1094, 1104, 1245, 1246, 1249, 1250], "protein": [0, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 122, 126, 127, 135, 139, 145, 220, 225, 227, 228, 229, 232, 233, 241, 243, 260, 261, 272, 273, 277, 296, 324, 326, 340, 358, 360, 375, 386, 387, 392, 393, 398, 406, 407, 440, 441, 442, 443, 474, 477, 517, 524, 527, 532, 553, 554, 555, 611, 614, 616, 617, 654, 656, 708, 713, 714, 753, 754, 761, 824, 825, 845, 854, 857, 858, 895, 918, 958, 962, 965, 967, 969, 973, 974, 975, 977, 978, 979, 980, 982, 1066, 1067, 1070, 1077, 1078, 1080, 1089, 1094, 1096, 1098, 1104, 1112, 1115, 1124, 1126, 1138, 1139, 1140, 1141, 1169, 1245, 1246, 1249, 1250], "also": [0, 30, 127, 135, 139, 145, 151, 211, 213, 214, 443, 448, 453, 517, 759, 974, 997, 1067, 1087, 1089, 1091, 1094, 1096, 1100, 1101, 1104, 1124, 1226, 1247, 1250], "provid": [0, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 96, 100, 101, 102, 103, 104, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 121, 122, 127, 128, 131, 132, 133, 134, 135, 139, 145, 204, 212, 213, 230, 233, 277, 294, 345, 355, 363, 406, 408, 411, 443, 448, 453, 517, 596, 649, 718, 753, 754, 878, 909, 915, 918, 928, 960, 967, 971, 973, 994, 997, 1008, 1019, 1059, 1060, 1067, 1081, 1087, 1089, 1091, 1094, 1096, 1098, 1102, 1105, 1129, 1130, 1134, 1135, 1139, 1169, 1239, 1246, 1247, 1249, 1250], "number": [0, 3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 123, 127, 131, 135, 136, 137, 139, 145, 147, 163, 164, 165, 166, 167, 178, 184, 185, 190, 224, 236, 267, 302, 316, 344, 366, 384, 427, 428, 471, 509, 511, 517, 524, 527, 532, 540, 550, 553, 554, 555, 604, 685, 688, 689, 721, 722, 724, 725, 726, 727, 728, 751, 754, 757, 781, 829, 830, 831, 832, 853, 854, 879, 908, 910, 933, 955, 956, 957, 972, 978, 982, 992, 996, 999, 1053, 1058, 1060, 1067, 1069, 1078, 1080, 1086, 1088, 1090, 1095, 1098, 1107, 1108, 1109, 1115, 1137, 1161, 1163, 1195, 1246, 1247, 1250], "util": [0, 3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 127, 139, 782, 992, 1245, 1246, 1249], "id": [0, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 122, 127, 128, 132, 135, 139, 145, 170, 179, 184, 185, 188, 189, 190, 191, 194, 197, 201, 203, 211, 225, 228, 229, 231, 232, 243, 251, 260, 312, 314, 345, 346, 349, 351, 352, 359, 363, 364, 375, 376, 378, 382, 384, 392, 393, 394, 398, 403, 405, 406, 407, 408, 429, 430, 441, 446, 451, 462, 468, 469, 517, 529, 532, 534, 564, 570, 571, 572, 588, 592, 611, 614, 616, 617, 649, 665, 666, 669, 707, 709, 713, 717, 718, 719, 734, 751, 754, 755, 759, 764, 765, 778, 780, 781, 782, 783, 814, 825, 834, 835, 836, 845, 859, 861, 873, 879, 892, 895, 898, 903, 904, 905, 906, 909, 911, 912, 913, 918, 928, 930, 940, 941, 942, 960, 963, 967, 968, 970, 971, 972, 974, 992, 1058, 1059, 1061, 1064, 1066, 1067, 1068, 1070, 1071, 1072, 1073, 1074, 1078, 1079, 1080, 1081, 1086, 1087, 1088, 1089, 1090, 1091, 1093, 1094, 1096, 1098, 1100, 1101, 1104, 1105, 1108, 1115, 1124, 1144, 1146, 1149, 1159, 1161, 1172, 1177, 1187, 1199, 1202, 1245, 1250], "translat": [0, 36, 127, 135, 260, 359, 364, 375, 376, 378, 441, 446, 451, 468, 469, 570, 571, 572, 588, 666, 751, 754, 755, 778, 782, 825, 905, 909, 915, 918, 928, 930, 963, 968, 970, 972, 973, 1059, 1066, 1067, 1068, 1071, 1078, 1079, 1080, 1081, 1082, 1083, 1087, 1089, 1091, 1094, 1096, 1098, 1105, 1140, 1161, 1245, 1249, 1250], "orthologi": [0, 127, 187, 468, 469, 751, 754, 1245, 1249], "handl": [0, 973, 1036, 1067, 1068, 1149, 1246, 1247], "taxonomi": [0, 3, 4, 5, 7, 8, 9, 11, 12, 13, 16, 17, 18, 19, 20, 21, 22, 24, 25, 26, 27, 28, 29, 33, 34, 35, 39, 41, 42, 44, 45, 46, 48, 49, 50, 52, 53, 57, 59, 60, 61, 62, 65, 66, 68, 70, 73, 74, 75, 76, 80, 81, 84, 90, 92, 122, 127, 128, 135, 145, 184, 185, 201, 345, 346, 349, 351, 352, 363, 403, 405, 406, 407, 408, 448, 453, 468, 469, 665, 666, 718, 719, 734, 751, 754, 764, 765, 845, 898, 911, 912, 930, 972, 974, 1066, 1067, 1068, 1078, 1080, 1087, 1089, 1091, 1094, 1096, 1098, 1100, 1101, 1104, 1105, 1144, 1245, 1246], "sequenc": [0, 127, 128, 145, 509, 524, 707, 754, 759, 978, 1098, 1099, 1108, 1138, 1139, 1140, 1141, 1142, 1143, 1144, 1163, 1195, 1245], "serv": [0, 118, 134, 895, 994, 1070, 1108, 1126, 1137, 1250], "web": [0, 150, 191, 202, 366, 462, 783, 915, 972, 1066, 1161, 1246, 1247, 1249], "server": [0, 1008, 1246, 1247, 1249, 1250], "etc": [0, 132, 133, 145, 441, 446, 451, 1030, 1246, 1247, 1249, 1250], "member": [0, 1, 2, 95, 97, 99, 121, 125, 131, 134, 138, 142, 144, 150, 153, 154, 156, 159, 162, 172, 174, 177, 183, 186, 192, 198, 200, 202, 206, 208, 210, 215, 217, 223, 235, 241, 242, 246, 248, 256, 259, 262, 269, 271, 274, 276, 279, 282, 284, 286, 290, 293, 295, 297, 301, 304, 307, 311, 317, 320, 323, 327, 330, 338, 343, 354, 361, 365, 367, 372, 374, 379, 381, 383, 385, 388, 391, 396, 418, 420, 422, 426, 431, 434, 436, 438, 439, 444, 449, 454, 455, 457, 458, 459, 461, 464, 466, 470, 476, 481, 486, 488, 490, 493, 495, 508, 510, 515, 518, 521, 523, 526, 528, 530, 535, 537, 539, 542, 546, 549, 553, 559, 576, 578, 580, 583, 586, 591, 593, 597, 599, 601, 603, 607, 609, 610, 612, 618, 620, 622, 626, 628, 636, 638, 640, 642, 645, 647, 651, 653, 655, 658, 662, 664, 667, 670, 676, 678, 681, 684, 687, 704, 706, 710, 712, 715, 720, 729, 731, 733, 737, 740, 743, 756, 760, 763, 766, 771, 773, 777, 779, 786, 789, 796, 797, 817, 822, 826, 828, 837, 842, 849, 852, 855, 860, 862, 864, 868, 872, 874, 880, 885, 887, 889, 896, 900, 902, 907, 934, 943, 948, 951, 953, 954, 958, 959, 973, 974, 983, 989, 990, 993, 1001, 1002, 1006, 1007, 1009, 1010, 1020, 1022, 1026, 1027, 1028, 1033, 1034, 1035, 1052, 1054, 1055, 1056, 1057, 1065, 1084, 1085, 1106, 1111, 1113, 1116, 1117, 1120, 1123, 1124, 1126, 1128, 1136, 1138, 1145, 1160, 1162, 1222, 1223, 1226, 1232, 1233, 1234, 1235, 1236, 1237, 1238, 1239, 1247], "class": [2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 95, 96, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 121, 122, 123, 124, 125, 126, 127, 128, 131, 132, 133, 134, 135, 136, 137, 138, 139, 143, 144, 145, 146, 147, 162, 163, 164, 165, 166, 167, 171, 177, 178, 223, 224, 235, 236, 343, 344, 354, 355, 366, 389, 426, 427, 428, 448, 453, 455, 456, 470, 471, 510, 511, 539, 540, 549, 550, 603, 604, 611, 684, 685, 687, 688, 689, 756, 757, 828, 829, 830, 831, 832, 861, 907, 908, 909, 910, 918, 928, 954, 955, 956, 957, 958, 959, 960, 961, 962, 963, 964, 965, 966, 967, 968, 969, 970, 971, 972, 973, 974, 975, 976, 977, 978, 979, 980, 981, 982, 983, 984, 985, 986, 987, 988, 990, 991, 993, 994, 995, 996, 997, 998, 999, 1000, 1007, 1008, 1020, 1021, 1035, 1036, 1037, 1038, 1039, 1040, 1041, 1042, 1043, 1044, 1045, 1046, 1047, 1048, 1050, 1051, 1052, 1053, 1057, 1058, 1059, 1060, 1065, 1066, 1067, 1068, 1069, 1070, 1085, 1086, 1087, 1088, 1089, 1090, 1091, 1092, 1093, 1094, 1095, 1096, 1097, 1098, 1099, 1106, 1107, 1108, 1109, 1111, 1112, 1113, 1114, 1115, 1116, 1117, 1118, 1119, 1120, 1121, 1122, 1123, 1124, 1125, 1126, 1127, 1128, 1129, 1136, 1137, 1138, 1139, 1140, 1141, 1160, 1161, 1162, 1163, 1172, 1223, 1224, 1225, 1226, 1227, 1229, 1232, 1233, 1234, 1235, 1236, 1237, 1238, 1239, 1240, 1241, 1242, 1243, 1244, 1246, 1248, 1249, 1250], "kwarg": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 96, 98, 100, 101, 102, 103, 104, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 119, 120, 122, 127, 128, 129, 130, 132, 133, 135, 139, 140, 141, 145, 148, 149, 294, 423, 425, 690, 691, 692, 693, 694, 695, 696, 698, 699, 700, 701, 702, 703, 776, 794, 799, 806, 808, 815, 847, 909, 915, 918, 928, 984, 994, 995, 998, 999, 1000, 1008, 1036, 1067, 1071, 1076, 1087, 1089, 1091, 1093, 1094, 1096, 1098, 1100, 1105, 1164, 1165, 1166, 1167, 1168, 1169, 1170, 1171, 1173, 1174, 1175, 1176, 1177, 1178, 1179, 1180, 1181, 1182, 1183, 1184, 1185, 1186, 1187, 1188, 1189, 1190, 1191, 1192, 1193, 1194, 1195, 1196, 1197, 1198, 1199, 1200, 1201, 1203, 1204, 1205, 1206, 1207, 1208, 1209, 1210, 1211, 1212, 1213, 1214, 1215, 1216, 1217, 1218, 1219, 1220, 1221, 1225, 1247], "sourc": [3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 96, 98, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 122, 124, 126, 127, 128, 129, 130, 132, 133, 135, 136, 139, 140, 141, 145, 146, 148, 149, 151, 152, 155, 157, 158, 160, 161, 163, 164, 165, 166, 167, 168, 169, 170, 171, 173, 175, 176, 179, 180, 181, 182, 184, 185, 187, 188, 189, 190, 191, 193, 194, 195, 196, 197, 199, 201, 203, 204, 205, 207, 209, 211, 212, 213, 214, 216, 218, 219, 220, 221, 222, 225, 226, 227, 228, 229, 230, 231, 232, 233, 234, 237, 238, 239, 240, 241, 243, 244, 245, 247, 249, 250, 251, 252, 253, 254, 255, 257, 258, 260, 261, 263, 264, 265, 266, 267, 268, 270, 272, 273, 275, 277, 278, 280, 281, 283, 285, 287, 288, 289, 291, 292, 294, 296, 298, 299, 300, 302, 303, 305, 306, 308, 309, 310, 312, 313, 314, 315, 316, 318, 319, 321, 322, 324, 325, 326, 328, 329, 331, 332, 333, 334, 335, 336, 337, 339, 340, 341, 342, 345, 346, 348, 349, 350, 355, 356, 357, 358, 359, 360, 362, 363, 364, 366, 368, 369, 370, 371, 373, 375, 376, 377, 378, 380, 382, 384, 386, 387, 389, 390, 392, 393, 394, 395, 397, 398, 399, 401, 402, 404, 405, 406, 407, 408, 409, 411, 412, 413, 415, 416, 417, 419, 421, 423, 424, 425, 427, 428, 429, 430, 432, 433, 435, 437, 440, 441, 442, 443, 445, 446, 447, 448, 450, 451, 452, 453, 456, 460, 462, 463, 465, 467, 468, 469, 472, 473, 474, 475, 477, 478, 479, 480, 482, 483, 484, 485, 487, 489, 491, 492, 494, 496, 497, 498, 499, 500, 501, 502, 503, 504, 505, 506, 507, 509, 512, 513, 514, 516, 517, 519, 520, 522, 524, 525, 527, 529, 531, 532, 533, 534, 536, 538, 541, 543, 544, 545, 547, 548, 551, 552, 553, 554, 555, 556, 557, 558, 564, 577, 579, 581, 582, 584, 585, 587, 588, 589, 590, 592, 594, 595, 596, 598, 600, 602, 604, 605, 606, 608, 611, 613, 614, 615, 616, 617, 619, 621, 623, 624, 625, 627, 629, 630, 631, 632, 633, 634, 635, 637, 639, 641, 643, 644, 646, 648, 649, 650, 652, 654, 656, 657, 659, 660, 661, 663, 665, 666, 668, 669, 671, 672, 673, 674, 675, 677, 679, 680, 682, 683, 686, 697, 705, 707, 708, 709, 711, 713, 714, 716, 717, 718, 719, 723, 727, 730, 732, 734, 735, 736, 738, 739, 741, 742, 744, 745, 746, 747, 748, 749, 750, 751, 752, 753, 754, 755, 758, 759, 761, 762, 764, 765, 767, 768, 769, 770, 772, 774, 775, 776, 778, 780, 781, 782, 783, 784, 785, 787, 788, 790, 791, 792, 793, 794, 795, 798, 799, 800, 801, 802, 803, 804, 805, 806, 807, 808, 809, 810, 811, 812, 813, 814, 815, 816, 818, 819, 820, 821, 823, 824, 825, 827, 829, 830, 831, 832, 833, 834, 835, 836, 838, 839, 840, 841, 843, 844, 845, 846, 847, 848, 850, 851, 853, 854, 856, 857, 858, 859, 861, 863, 865, 866, 867, 869, 870, 871, 873, 875, 876, 877, 878, 879, 881, 882, 883, 884, 886, 888, 890, 891, 892, 893, 894, 895, 897, 898, 899, 901, 903, 904, 905, 906, 909, 911, 912, 913, 914, 915, 916, 917, 918, 919, 920, 921, 922, 923, 924, 925, 926, 927, 928, 929, 930, 931, 932, 933, 935, 936, 937, 938, 939, 940, 941, 942, 944, 945, 946, 947, 949, 950, 952, 955, 957, 958, 960, 961, 962, 963, 964, 965, 966, 967, 968, 969, 970, 971, 972, 974, 975, 976, 977, 978, 979, 980, 981, 982, 984, 985, 986, 987, 988, 991, 992, 994, 995, 997, 998, 999, 1000, 1003, 1004, 1005, 1008, 1019, 1021, 1023, 1024, 1025, 1029, 1030, 1031, 1032, 1036, 1037, 1038, 1039, 1040, 1041, 1042, 1043, 1044, 1045, 1046, 1047, 1048, 1049, 1050, 1051, 1053, 1058, 1059, 1060, 1061, 1062, 1063, 1066, 1067, 1068, 1071, 1072, 1073, 1074, 1075, 1076, 1077, 1078, 1079, 1080, 1081, 1082, 1083, 1086, 1087, 1088, 1089, 1090, 1091, 1092, 1093, 1094, 1095, 1096, 1097, 1098, 1099, 1100, 1101, 1102, 1103, 1104, 1105, 1108, 1110, 1112, 1114, 1115, 1116, 1117, 1118, 1119, 1120, 1121, 1122, 1123, 1124, 1125, 1126, 1127, 1129, 1130, 1131, 1132, 1133, 1134, 1135, 1137, 1139, 1140, 1141, 1142, 1143, 1144, 1146, 1147, 1148, 1149, 1150, 1151, 1152, 1153, 1154, 1155, 1156, 1157, 1158, 1159, 1161, 1163, 1169, 1172, 1177, 1187, 1199, 1202, 1224, 1225, 1227, 1229, 1233, 1234, 1235, 1236, 1237, 1238, 1240, 1241, 1242, 1243, 1244, 1246, 1247, 1249, 1250], "base": [3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 96, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 122, 123, 124, 126, 127, 128, 132, 133, 135, 136, 137, 139, 145, 146, 147, 163, 164, 165, 166, 167, 178, 224, 236, 344, 346, 347, 348, 350, 352, 353, 355, 427, 428, 456, 471, 511, 540, 550, 604, 685, 688, 689, 751, 757, 764, 765, 774, 829, 830, 831, 832, 877, 878, 908, 909, 910, 955, 956, 957, 958, 960, 961, 962, 963, 964, 965, 966, 967, 968, 969, 970, 971, 972, 974, 975, 976, 977, 978, 979, 980, 981, 982, 984, 985, 986, 987, 988, 991, 994, 995, 996, 997, 998, 999, 1000, 1008, 1021, 1036, 1037, 1038, 1039, 1040, 1041, 1042, 1043, 1044, 1045, 1046, 1047, 1048, 1050, 1051, 1053, 1058, 1059, 1060, 1066, 1067, 1068, 1069, 1086, 1087, 1088, 1089, 1090, 1091, 1092, 1093, 1094, 1095, 1096, 1097, 1098, 1099, 1107, 1108, 1109, 1112, 1114, 1115, 1116, 1117, 1118, 1119, 1120, 1121, 1122, 1123, 1124, 1125, 1126, 1127, 1129, 1137, 1139, 1140, 1141, 1161, 1163, 1224, 1225, 1227, 1229, 1233, 1234, 1235, 1236, 1237, 1238, 1240, 1241, 1242, 1243, 1244, 1245, 1249], "annotationbas": [3, 4, 7, 8, 9, 10, 11, 12, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 29, 31, 32, 33, 34, 35, 37, 38, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 91, 92, 1247], "__init__": [3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 96, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 122, 123, 124, 126, 127, 128, 132, 133, 135, 136, 137, 139, 145, 146, 147, 163, 164, 165, 166, 167, 178, 224, 236, 329, 344, 355, 427, 428, 456, 471, 511, 540, 550, 604, 685, 688, 689, 757, 829, 830, 831, 832, 908, 909, 910, 955, 956, 957, 958, 960, 961, 962, 963, 964, 965, 966, 967, 968, 969, 970, 971, 972, 974, 975, 976, 977, 978, 979, 980, 981, 982, 984, 985, 986, 987, 988, 991, 994, 995, 996, 997, 998, 999, 1000, 1008, 1021, 1036, 1037, 1038, 1039, 1040, 1041, 1042, 1043, 1044, 1045, 1046, 1047, 1048, 1050, 1051, 1053, 1058, 1059, 1060, 1066, 1067, 1068, 1069, 1086, 1087, 1088, 1089, 1090, 1091, 1092, 1093, 1094, 1095, 1096, 1097, 1098, 1099, 1107, 1108, 1109, 1112, 1114, 1115, 1116, 1117, 1118, 1119, 1120, 1121, 1122, 1123, 1124, 1125, 1126, 1127, 1129, 1137, 1139, 1140, 1141, 1161, 1163, 1224, 1225, 1227, 1229, 1233, 1234, 1235, 1236, 1237, 1238, 1240, 1241, 1242, 1243, 1244, 1247], "repres": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 118, 121, 122, 127, 131, 132, 134, 135, 139, 145, 171, 181, 182, 229, 230, 232, 233, 239, 260, 355, 362, 363, 429, 533, 668, 751, 825, 904, 958, 973, 974, 997, 1067, 1098, 1124, 1140, 1247], "set": [3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 122, 126, 127, 128, 132, 133, 135, 139, 145, 171, 179, 182, 188, 190, 203, 204, 211, 214, 225, 226, 229, 231, 232, 234, 240, 288, 291, 292, 294, 305, 346, 347, 348, 350, 352, 353, 356, 359, 364, 371, 375, 384, 386, 387, 400, 401, 402, 404, 406, 407, 408, 410, 411, 412, 429, 441, 446, 451, 468, 469, 477, 478, 479, 494, 517, 524, 529, 531, 532, 553, 555, 614, 616, 617, 648, 649, 650, 665, 666, 709, 717, 718, 719, 759, 764, 775, 778, 781, 790, 791, 793, 833, 836, 878, 890, 905, 909, 913, 930, 955, 957, 958, 960, 965, 967, 971, 972, 974, 985, 986, 987, 988, 994, 995, 997, 1008, 1013, 1036, 1039, 1040, 1041, 1042, 1043, 1044, 1045, 1046, 1047, 1048, 1050, 1051, 1053, 1058, 1059, 1060, 1066, 1067, 1068, 1078, 1080, 1083, 1087, 1089, 1091, 1094, 1096, 1098, 1100, 1101, 1104, 1105, 1115, 1124, 1161, 1247, 1249, 1250], "load": [3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 127, 128, 145, 319, 398, 498, 504, 505, 517, 527, 748, 750, 844, 890, 994, 1008, 1018, 1029, 1058, 1060, 1066, 1067, 1068, 1078, 1089, 1098, 1102, 1108, 1139, 1140, 1142, 1144, 1245, 1246, 1249], "data": [3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 96, 98, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 127, 128, 135, 139, 145, 151, 157, 168, 169, 170, 179, 181, 182, 187, 190, 193, 213, 220, 221, 222, 228, 249, 250, 252, 253, 254, 255, 256, 258, 260, 265, 266, 267, 270, 273, 277, 296, 306, 312, 314, 315, 319, 331, 332, 333, 334, 335, 336, 337, 345, 346, 347, 348, 350, 352, 353, 366, 389, 390, 406, 407, 411, 424, 432, 441, 442, 443, 446, 447, 448, 451, 452, 453, 468, 469, 472, 474, 479, 482, 483, 484, 498, 505, 517, 564, 587, 596, 665, 666, 671, 672, 673, 674, 675, 680, 708, 711, 714, 720, 721, 722, 724, 725, 726, 727, 728, 744, 745, 746, 748, 749, 750, 753, 754, 764, 765, 778, 791, 800, 818, 819, 820, 821, 857, 858, 878, 879, 890, 894, 895, 901, 905, 913, 971, 972, 977, 994, 995, 999, 1008, 1029, 1036, 1037, 1040, 1041, 1060, 1066, 1067, 1068, 1070, 1087, 1089, 1091, 1094, 1096, 1098, 1100, 1101, 1102, 1104, 1105, 1112, 1115, 1139, 1140, 1172, 1245, 1246, 1249, 1250], "from": [3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 97, 105, 122, 126, 127, 128, 132, 133, 135, 139, 145, 155, 157, 158, 168, 169, 170, 179, 180, 182, 184, 185, 187, 192, 203, 204, 205, 207, 209, 211, 212, 213, 214, 220, 221, 222, 225, 226, 227, 228, 229, 230, 231, 232, 233, 234, 239, 240, 243, 244, 245, 247, 249, 250, 252, 253, 254, 255, 256, 258, 260, 261, 264, 265, 266, 270, 272, 273, 275, 277, 280, 281, 285, 291, 292, 294, 305, 308, 309, 312, 314, 318, 319, 324, 325, 331, 332, 333, 334, 335, 336, 337, 345, 346, 347, 348, 350, 352, 353, 356, 357, 358, 359, 360, 362, 363, 364, 366, 371, 375, 376, 377, 378, 384, 389, 390, 392, 393, 394, 395, 398, 403, 405, 406, 410, 411, 412, 421, 429, 430, 432, 433, 440, 441, 442, 443, 445, 446, 447, 448, 450, 451, 452, 453, 465, 468, 469, 472, 478, 479, 496, 497, 501, 502, 503, 504, 505, 509, 525, 529, 554, 555, 560, 561, 562, 563, 564, 565, 566, 567, 568, 569, 573, 574, 575, 577, 579, 584, 585, 587, 596, 614, 616, 617, 627, 629, 637, 639, 641, 648, 649, 650, 654, 656, 657, 663, 665, 666, 668, 669, 671, 672, 673, 674, 675, 679, 680, 682, 683, 686, 708, 711, 713, 714, 716, 717, 719, 720, 721, 722, 724, 725, 726, 728, 732, 734, 744, 745, 746, 748, 749, 750, 751, 752, 753, 764, 765, 774, 778, 787, 788, 791, 792, 793, 794, 795, 818, 821, 823, 824, 825, 827, 833, 834, 835, 836, 840, 845, 847, 851, 873, 877, 878, 879, 888, 890, 891, 892, 895, 898, 901, 905, 911, 913, 918, 921, 930, 944, 945, 950, 952, 958, 963, 965, 967, 968, 971, 972, 994, 995, 997, 999, 1008, 1036, 1037, 1039, 1040, 1041, 1042, 1043, 1044, 1045, 1046, 1047, 1048, 1050, 1051, 1058, 1059, 1060, 1066, 1067, 1070, 1072, 1078, 1080, 1087, 1089, 1091, 1094, 1096, 1098, 1100, 1101, 1104, 1105, 1112, 1115, 1124, 1129, 1134, 1139, 1140, 1163, 1188, 1226, 1233, 1234, 1235, 1236, 1237, 1238, 1243, 1245, 1246, 1249, 1250], "origin": [3, 4, 5, 7, 8, 9, 11, 12, 13, 16, 17, 18, 19, 20, 21, 22, 24, 25, 26, 27, 28, 29, 30, 33, 34, 35, 39, 41, 42, 44, 45, 46, 48, 49, 50, 52, 53, 57, 59, 60, 61, 62, 65, 66, 68, 70, 73, 74, 75, 76, 80, 81, 84, 90, 92, 127, 135, 139, 260, 306, 345, 553, 945, 995, 1066, 1067, 1078, 1080, 1115, 1245, 1246, 1249], "method": [3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 96, 97, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 122, 123, 124, 126, 127, 128, 132, 133, 134, 135, 136, 137, 139, 145, 146, 147, 149, 163, 164, 165, 166, 167, 178, 224, 236, 331, 344, 347, 348, 353, 355, 395, 406, 407, 408, 410, 411, 412, 427, 428, 437, 456, 471, 511, 517, 540, 550, 604, 685, 688, 689, 709, 754, 757, 829, 830, 831, 832, 894, 908, 909, 910, 955, 956, 957, 958, 960, 961, 962, 963, 964, 965, 966, 967, 968, 969, 970, 971, 972, 974, 975, 976, 977, 978, 979, 980, 981, 982, 984, 985, 986, 987, 988, 991, 994, 995, 996, 997, 998, 999, 1000, 1008, 1021, 1036, 1037, 1038, 1039, 1040, 1041, 1042, 1043, 1044, 1045, 1046, 1047, 1048, 1050, 1051, 1053, 1058, 1059, 1060, 1066, 1067, 1068, 1069, 1086, 1087, 1088, 1089, 1090, 1091, 1092, 1093, 1094, 1095, 1096, 1097, 1098, 1099, 1107, 1108, 1109, 1112, 1114, 1115, 1116, 1117, 1118, 1119, 1120, 1121, 1122, 1123, 1124, 1125, 1126, 1127, 1129, 1137, 1139, 1140, 1141, 1161, 1163, 1172, 1224, 1225, 1227, 1229, 1233, 1234, 1235, 1236, 1237, 1238, 1240, 1241, 1242, 1243, 1244, 1246, 1247, 1249], "queri": [3, 4, 5, 6, 7, 8, 9, 11, 12, 13, 16, 17, 18, 19, 20, 21, 22, 24, 25, 26, 27, 28, 29, 30, 33, 34, 35, 39, 41, 42, 44, 45, 46, 48, 49, 50, 52, 53, 57, 59, 60, 61, 62, 65, 66, 68, 70, 73, 74, 75, 76, 80, 81, 84, 90, 92, 133, 134, 135, 139, 145, 150, 191, 366, 384, 400, 401, 402, 406, 407, 408, 410, 411, 412, 414, 415, 416, 417, 516, 517, 564, 669, 718, 719, 723, 727, 759, 781, 890, 909, 915, 918, 928, 972, 1066, 1102, 1112, 1161, 1172, 1245, 1249], "paramet": [3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 105, 122, 127, 128, 132, 133, 135, 139, 145, 168, 169, 170, 213, 220, 221, 222, 241, 243, 244, 245, 260, 261, 270, 302, 303, 312, 313, 314, 315, 329, 331, 332, 333, 334, 335, 336, 337, 346, 347, 348, 349, 350, 351, 352, 353, 366, 384, 386, 387, 389, 390, 392, 393, 394, 400, 401, 402, 403, 405, 406, 407, 408, 410, 411, 412, 414, 415, 416, 417, 419, 424, 429, 430, 441, 442, 443, 446, 447, 448, 451, 452, 453, 462, 463, 516, 517, 648, 649, 650, 665, 666, 671, 672, 673, 674, 675, 721, 722, 723, 724, 725, 726, 727, 728, 734, 751, 754, 775, 781, 793, 794, 818, 819, 820, 821, 836, 890, 898, 909, 912, 913, 915, 918, 928, 930, 955, 958, 960, 963, 965, 967, 968, 970, 971, 972, 992, 1008, 1021, 1036, 1037, 1039, 1040, 1041, 1042, 1043, 1044, 1045, 1046, 1047, 1048, 1050, 1051, 1053, 1058, 1059, 1060, 1061, 1064, 1066, 1087, 1089, 1091, 1094, 1096, 1098, 1100, 1101, 1104, 1105, 1108, 1112, 1115, 1124, 1129, 1144, 1146, 1161, 1169, 1172, 1225, 1229, 1245, 1246, 1247], "name": [3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 122, 127, 128, 133, 135, 139, 145, 167, 170, 179, 180, 187, 188, 189, 190, 191, 194, 197, 205, 214, 222, 225, 226, 227, 228, 229, 230, 231, 232, 233, 234, 239, 244, 245, 249, 250, 254, 255, 257, 258, 270, 291, 292, 294, 312, 314, 345, 346, 349, 351, 352, 357, 359, 362, 363, 366, 382, 389, 394, 395, 398, 403, 405, 406, 407, 408, 414, 415, 416, 417, 424, 429, 430, 443, 448, 453, 456, 479, 494, 533, 534, 561, 565, 567, 568, 569, 571, 572, 575, 592, 648, 649, 650, 665, 666, 668, 671, 672, 673, 674, 675, 679, 689, 711, 716, 718, 723, 764, 765, 778, 794, 823, 824, 825, 829, 833, 834, 835, 836, 845, 859, 891, 894, 898, 904, 909, 918, 928, 930, 933, 940, 941, 942, 955, 956, 957, 958, 960, 963, 965, 967, 968, 969, 970, 971, 974, 982, 984, 994, 995, 996, 997, 998, 999, 1000, 1003, 1008, 1015, 1021, 1029, 1036, 1037, 1039, 1040, 1041, 1042, 1043, 1044, 1045, 1046, 1047, 1048, 1050, 1051, 1053, 1058, 1059, 1060, 1061, 1064, 1066, 1067, 1072, 1077, 1078, 1079, 1080, 1087, 1089, 1091, 1093, 1094, 1096, 1098, 1100, 1101, 1104, 1105, 1108, 1115, 1124, 1129, 1130, 1134, 1135, 1140, 1144, 1146, 1149, 1152, 1153, 1163, 1172, 1173, 1225, 1245, 1248, 1250], "str": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 96, 100, 101, 102, 103, 104, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 122, 127, 128, 132, 133, 135, 139, 145, 163, 165, 166, 167, 179, 181, 182, 187, 188, 189, 190, 191, 197, 209, 211, 214, 220, 221, 222, 225, 226, 227, 228, 229, 230, 231, 232, 233, 234, 243, 244, 245, 251, 264, 265, 266, 267, 294, 302, 303, 312, 313, 345, 346, 349, 351, 352, 355, 356, 357, 358, 359, 360, 363, 364, 366, 373, 384, 392, 393, 394, 404, 419, 424, 427, 428, 429, 441, 443, 446, 448, 451, 453, 462, 463, 468, 477, 478, 479, 480, 494, 517, 531, 532, 534, 564, 648, 649, 650, 665, 666, 668, 669, 674, 675, 718, 723, 764, 765, 772, 775, 778, 781, 782, 783, 790, 791, 792, 793, 794, 823, 824, 827, 829, 830, 831, 832, 833, 836, 845, 850, 856, 859, 890, 892, 894, 895, 898, 903, 905, 909, 913, 915, 918, 928, 930, 958, 960, 965, 967, 971, 972, 974, 994, 997, 999, 1008, 1023, 1024, 1029, 1030, 1031, 1032, 1036, 1039, 1040, 1041, 1042, 1043, 1044, 1045, 1046, 1047, 1048, 1050, 1051, 1058, 1059, 1060, 1066, 1067, 1068, 1078, 1080, 1082, 1083, 1087, 1089, 1091, 1093, 1094, 1096, 1098, 1100, 1101, 1104, 1105, 1108, 1112, 1115, 1144, 1146, 1152, 1153, 1161, 1172], "A": [3, 4, 5, 6, 7, 8, 9, 11, 12, 13, 16, 17, 18, 19, 20, 21, 22, 24, 25, 26, 27, 28, 29, 30, 33, 34, 35, 36, 39, 41, 42, 44, 45, 46, 48, 49, 50, 52, 53, 57, 59, 60, 61, 62, 65, 66, 68, 70, 73, 74, 75, 76, 80, 81, 84, 90, 92, 100, 121, 122, 127, 128, 131, 133, 135, 139, 145, 181, 188, 190, 194, 204, 212, 213, 225, 226, 227, 229, 230, 231, 232, 233, 234, 291, 292, 294, 312, 325, 340, 342, 345, 346, 347, 348, 350, 352, 353, 355, 366, 384, 392, 393, 394, 429, 430, 442, 447, 452, 478, 532, 533, 534, 564, 665, 666, 713, 716, 717, 719, 723, 759, 765, 778, 793, 834, 845, 877, 878, 904, 905, 906, 909, 915, 918, 928, 930, 974, 997, 999, 1018, 1029, 1058, 1059, 1066, 1067, 1071, 1081, 1087, 1089, 1091, 1094, 1096, 1098, 1100, 1101, 1105, 1108, 1112, 1124, 1144, 1161, 1172, 1247, 1249, 1250], "custom": [3, 4, 5, 6, 7, 8, 9, 11, 12, 13, 16, 17, 18, 19, 20, 21, 22, 24, 25, 26, 27, 28, 29, 30, 33, 34, 35, 39, 41, 42, 44, 45, 46, 48, 49, 50, 52, 53, 57, 59, 60, 61, 62, 65, 66, 68, 70, 73, 74, 75, 76, 80, 81, 84, 90, 92, 96, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 133, 135, 139, 145, 294, 854, 857, 858, 958, 960, 963, 967, 968, 970, 971, 974, 994, 1008, 1053, 1059, 1066, 1070, 1245, 1246], "ncbi_tax_id": [3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 100, 126, 127, 128, 145, 175, 176, 375, 746, 748, 750, 854, 856, 857, 858, 886, 930, 960, 961, 962, 963, 964, 965, 966, 967, 968, 970, 971, 972, 974, 975, 979, 980, 982, 994, 1059, 1066, 1067, 1068, 1069, 1073, 1074, 1077, 1078, 1079, 1080, 1082, 1083, 1124, 1129, 1130, 1132, 1134, 1135, 1139, 1140, 1247, 1250], "int": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 122, 127, 128, 135, 139, 145, 179, 182, 184, 185, 187, 188, 189, 190, 201, 211, 214, 220, 221, 222, 225, 226, 227, 228, 229, 230, 231, 232, 233, 234, 243, 244, 245, 252, 267, 316, 345, 346, 349, 351, 352, 363, 366, 373, 384, 404, 406, 407, 408, 419, 424, 441, 442, 443, 446, 447, 448, 451, 452, 453, 468, 469, 517, 527, 532, 553, 554, 555, 665, 666, 718, 719, 721, 722, 724, 725, 726, 727, 728, 734, 751, 754, 764, 765, 772, 781, 783, 823, 824, 845, 850, 851, 854, 856, 857, 858, 859, 898, 903, 905, 912, 918, 930, 972, 974, 1024, 1053, 1066, 1067, 1068, 1078, 1080, 1082, 1083, 1087, 1089, 1091, 1094, 1096, 1097, 1098, 1100, 1101, 1104, 1105, 1108, 1112, 1115, 1144, 1146, 1152, 1161], "ncbi": [3, 4, 5, 7, 8, 9, 11, 12, 13, 16, 17, 18, 19, 20, 21, 22, 24, 25, 26, 27, 28, 29, 33, 34, 35, 39, 41, 42, 44, 45, 46, 48, 49, 50, 52, 53, 57, 59, 60, 61, 62, 65, 66, 68, 70, 73, 74, 75, 76, 80, 81, 84, 90, 92, 122, 127, 128, 135, 145, 184, 185, 201, 345, 346, 349, 351, 352, 363, 384, 403, 405, 406, 407, 408, 467, 468, 469, 496, 497, 571, 665, 666, 718, 719, 734, 751, 754, 764, 765, 782, 845, 898, 911, 912, 930, 972, 974, 992, 1066, 1067, 1068, 1078, 1080, 1087, 1089, 1091, 1094, 1096, 1098, 1100, 1101, 1104, 1105, 1144, 1146, 1149, 1159, 1245, 1246, 1250], "identifi": [3, 4, 5, 7, 8, 9, 11, 12, 13, 16, 17, 18, 19, 20, 21, 22, 24, 25, 26, 27, 28, 29, 30, 33, 34, 35, 39, 41, 42, 44, 45, 46, 48, 49, 50, 52, 53, 57, 59, 60, 61, 62, 65, 66, 68, 70, 73, 74, 75, 76, 80, 81, 84, 90, 92, 121, 122, 123, 127, 135, 139, 145, 170, 171, 188, 190, 194, 205, 212, 213, 225, 226, 227, 228, 229, 230, 231, 232, 233, 234, 260, 267, 312, 313, 315, 355, 357, 359, 360, 364, 384, 441, 446, 451, 462, 463, 527, 553, 649, 650, 665, 666, 707, 708, 709, 778, 790, 791, 793, 823, 824, 905, 909, 911, 913, 914, 918, 921, 922, 929, 930, 958, 974, 1030, 1060, 1066, 1067, 1068, 1075, 1082, 1083, 1087, 1089, 1091, 1094, 1096, 1098, 1100, 1101, 1104, 1105, 1115, 1119, 1129, 1130, 1134, 1135, 1161, 1163, 1173, 1245, 1246], "input_method": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 127, 128, 964, 994, 995, 1247], "callabl": [3, 4, 5, 7, 8, 9, 11, 12, 13, 16, 17, 18, 19, 20, 21, 22, 24, 25, 26, 27, 28, 29, 33, 34, 35, 39, 41, 42, 44, 45, 46, 48, 49, 50, 52, 53, 57, 59, 60, 61, 62, 65, 66, 68, 70, 73, 74, 75, 76, 80, 81, 84, 90, 92, 100, 101, 102, 103, 104, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 128, 264, 366, 772, 955, 994, 1008], "either": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 128, 132, 135, 139, 181, 221, 225, 306, 442, 553, 674, 718, 778, 794, 905, 958, 974, 997, 1036, 1060, 1067, 1077, 1112, 1115, 1161, 1247, 1250], "ani": [3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 96, 122, 132, 135, 145, 266, 267, 294, 406, 411, 648, 650, 718, 945, 1030, 1058, 1061, 1064, 1066, 1067, 1077, 1124, 1229, 1245, 1246, 1249, 1250], "submodul": [3, 4, 5, 7, 8, 9, 11, 12, 13, 16, 17, 18, 19, 20, 21, 22, 24, 25, 26, 27, 28, 29, 33, 34, 35, 39, 41, 42, 44, 45, 46, 48, 49, 50, 52, 53, 57, 59, 60, 61, 62, 65, 66, 68, 70, 73, 74, 75, 76, 80, 81, 84, 90, 92, 395, 1246, 1247, 1249], "input": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 127, 128, 145, 965, 969, 972, 994, 1067, 1078, 1087, 1089, 1091, 1094, 1096, 1105, 1245, 1246, 1249], "should": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 127, 132, 133, 139, 145, 179, 182, 193, 249, 397, 398, 407, 409, 525, 876, 895, 955, 958, 974, 1008, 1059, 1066, 1067, 1078, 1115, 1233, 1234, 1235, 1236, 1237, 1238, 1246, 1247, 1250], "return": [3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 96, 118, 122, 123, 127, 128, 132, 133, 135, 136, 137, 139, 145, 147, 157, 163, 164, 165, 166, 167, 168, 169, 170, 171, 178, 179, 180, 181, 182, 184, 185, 187, 188, 190, 191, 194, 197, 199, 201, 203, 204, 205, 209, 211, 212, 213, 214, 220, 221, 222, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233, 234, 236, 240, 243, 244, 245, 249, 250, 251, 252, 253, 254, 255, 257, 258, 260, 267, 268, 270, 285, 288, 294, 302, 303, 305, 306, 308, 309, 312, 313, 314, 315, 325, 326, 331, 332, 333, 334, 335, 336, 337, 340, 342, 344, 345, 349, 351, 355, 356, 357, 358, 359, 360, 362, 363, 364, 366, 375, 376, 377, 378, 382, 389, 390, 392, 393, 394, 395, 398, 400, 401, 402, 406, 407, 408, 410, 411, 412, 414, 415, 416, 417, 421, 424, 427, 428, 429, 430, 441, 442, 446, 447, 451, 452, 463, 467, 468, 469, 471, 472, 474, 477, 478, 479, 483, 484, 494, 501, 502, 504, 505, 511, 529, 531, 532, 533, 534, 536, 540, 545, 550, 552, 553, 555, 564, 584, 585, 587, 592, 596, 604, 611, 614, 616, 617, 649, 650, 665, 666, 668, 671, 672, 673, 674, 675, 685, 686, 688, 689, 707, 708, 709, 711, 713, 714, 716, 717, 718, 719, 721, 722, 723, 724, 725, 726, 727, 728, 734, 746, 748, 749, 750, 751, 754, 757, 759, 764, 765, 774, 778, 782, 787, 793, 794, 800, 813, 816, 818, 819, 820, 821, 825, 827, 829, 830, 831, 832, 833, 834, 835, 836, 840, 844, 845, 859, 873, 875, 876, 877, 878, 879, 891, 893, 894, 904, 905, 906, 908, 909, 910, 911, 913, 915, 918, 921, 928, 930, 940, 941, 945, 947, 950, 955, 956, 957, 958, 972, 977, 978, 985, 986, 987, 988, 995, 996, 997, 999, 1008, 1019, 1025, 1029, 1031, 1032, 1036, 1037, 1053, 1058, 1059, 1060, 1066, 1067, 1069, 1071, 1072, 1073, 1074, 1076, 1077, 1078, 1079, 1080, 1086, 1087, 1088, 1089, 1090, 1091, 1093, 1094, 1095, 1096, 1098, 1100, 1101, 1102, 1104, 1105, 1107, 1108, 1109, 1112, 1129, 1134, 1143, 1144, 1146, 1149, 1152, 1153, 1159, 1161, 1163, 1172, 1173, 1177, 1188, 1193, 1194, 1195, 1196, 1202, 1205, 1220, 1221, 1229, 1233, 1234, 1235, 1236, 1237, 1238, 1246, 1247, 1250], "dict": [3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 96, 122, 126, 127, 128, 132, 133, 135, 139, 145, 179, 182, 194, 197, 203, 204, 211, 212, 213, 225, 226, 227, 230, 231, 233, 251, 264, 265, 266, 267, 285, 288, 294, 305, 308, 309, 340, 355, 356, 359, 364, 366, 375, 384, 390, 394, 398, 400, 401, 402, 404, 406, 407, 408, 410, 411, 412, 413, 414, 415, 416, 417, 421, 424, 429, 441, 442, 443, 446, 447, 448, 451, 452, 453, 468, 469, 472, 474, 477, 478, 479, 480, 494, 531, 532, 534, 554, 564, 570, 571, 572, 589, 592, 611, 649, 650, 666, 668, 669, 671, 672, 673, 674, 675, 707, 708, 713, 717, 718, 719, 721, 722, 723, 724, 725, 726, 727, 728, 734, 751, 759, 764, 772, 778, 781, 792, 793, 794, 816, 833, 836, 844, 845, 850, 859, 861, 873, 877, 879, 894, 895, 905, 906, 909, 913, 915, 918, 928, 930, 974, 997, 1008, 1025, 1059, 1067, 1068, 1083, 1087, 1089, 1091, 1094, 1096, 1098, 1101, 1105, 1112, 1115, 1124, 1143, 1144, 1152, 1163, 1173, 1247, 1249], "uniprot": [3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 122, 127, 128, 135, 139, 145, 179, 205, 211, 225, 229, 231, 232, 243, 244, 260, 296, 375, 376, 378, 392, 393, 394, 398, 403, 405, 406, 407, 408, 429, 469, 509, 524, 525, 529, 532, 538, 572, 588, 611, 614, 616, 617, 665, 666, 707, 709, 713, 718, 719, 751, 754, 755, 759, 764, 772, 812, 821, 825, 861, 873, 877, 879, 891, 892, 895, 942, 965, 969, 971, 972, 975, 978, 979, 980, 982, 995, 1058, 1059, 1061, 1064, 1066, 1067, 1070, 1073, 1074, 1078, 1080, 1087, 1089, 1091, 1094, 1096, 1098, 1100, 1101, 1104, 1105, 1107, 1108, 1109, 1122, 1137, 1139, 1140, 1142, 1144, 1159, 1245, 1246, 1249, 1250], "kei": [3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 96, 122, 132, 133, 135, 139, 145, 179, 182, 188, 190, 194, 203, 211, 225, 226, 227, 231, 243, 251, 267, 294, 359, 364, 366, 375, 390, 394, 400, 401, 402, 406, 407, 408, 410, 411, 412, 413, 414, 415, 416, 417, 429, 441, 443, 446, 448, 451, 453, 468, 469, 477, 479, 531, 532, 534, 564, 592, 611, 649, 650, 666, 668, 669, 671, 672, 673, 674, 675, 707, 708, 709, 713, 718, 759, 764, 778, 794, 859, 861, 873, 879, 905, 906, 909, 915, 918, 928, 930, 955, 958, 974, 977, 985, 986, 987, 988, 997, 1008, 1029, 1030, 1036, 1059, 1067, 1068, 1087, 1089, 1091, 1094, 1096, 1101, 1105, 1115, 1124, 1143, 1144, 1150, 1151, 1161, 1172, 1247, 1250], "an": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 96, 122, 127, 132, 133, 135, 139, 145, 188, 189, 190, 191, 230, 233, 347, 348, 353, 359, 364, 366, 441, 443, 446, 448, 451, 453, 474, 498, 509, 538, 551, 648, 649, 650, 668, 669, 707, 713, 714, 719, 721, 722, 724, 725, 726, 728, 751, 794, 836, 905, 909, 915, 918, 928, 955, 957, 972, 985, 986, 987, 988, 997, 999, 1008, 1018, 1030, 1058, 1060, 1066, 1067, 1071, 1078, 1087, 1089, 1091, 1093, 1094, 1096, 1098, 1099, 1102, 1103, 1105, 1112, 1115, 1144, 1146, 1161, 1169, 1226, 1229, 1233, 1234, 1235, 1236, 1237, 1238, 1245, 1246, 1250], "object": [3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 96, 97, 105, 122, 124, 127, 132, 133, 134, 135, 139, 145, 146, 181, 221, 225, 226, 227, 229, 232, 234, 260, 265, 267, 355, 393, 456, 588, 594, 708, 759, 813, 814, 816, 876, 878, 909, 955, 957, 958, 964, 965, 969, 974, 975, 976, 977, 978, 979, 980, 981, 982, 984, 986, 991, 992, 997, 1000, 1008, 1011, 1012, 1013, 1014, 1015, 1016, 1017, 1018, 1025, 1036, 1038, 1053, 1058, 1059, 1060, 1061, 1064, 1067, 1071, 1078, 1080, 1092, 1097, 1098, 1099, 1102, 1112, 1114, 1115, 1119, 1121, 1122, 1124, 1126, 1127, 1137, 1140, 1141, 1144, 1161, 1163, 1172, 1202, 1224, 1227, 1229, 1233, 1234, 1235, 1236, 1237, 1238, 1240, 1241, 1242, 1243, 1244, 1245, 1246, 1248], "suitabl": [3, 4, 5, 7, 8, 9, 11, 12, 13, 16, 17, 18, 19, 20, 21, 22, 24, 25, 26, 27, 28, 29, 33, 34, 35, 39, 41, 42, 44, 45, 46, 48, 49, 50, 52, 53, 57, 59, 60, 61, 62, 65, 66, 68, 70, 73, 74, 75, 76, 80, 81, 84, 90, 92, 909, 1067, 1126, 1247], "process_method": [3, 4, 5, 7, 8, 9, 11, 12, 13, 16, 17, 18, 19, 20, 21, 22, 24, 25, 26, 27, 28, 29, 33, 34, 35, 39, 41, 42, 44, 45, 46, 48, 49, 50, 52, 53, 57, 59, 60, 61, 62, 65, 66, 68, 70, 73, 74, 75, 76, 80, 81, 84, 90, 92, 100, 101, 102, 103, 104, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117], "input_arg": [3, 4, 5, 7, 8, 9, 11, 12, 13, 16, 17, 18, 19, 20, 21, 22, 24, 25, 26, 27, 28, 29, 33, 34, 35, 39, 41, 42, 44, 45, 46, 48, 49, 50, 52, 53, 57, 59, 60, 61, 62, 65, 66, 68, 70, 73, 74, 75, 76, 80, 81, 84, 90, 92, 100, 102, 103, 104, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 965, 994, 1018], "argument": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 96, 122, 127, 128, 132, 135, 139, 145, 212, 443, 448, 453, 893, 960, 967, 971, 1036, 1094, 1098, 1105, 1229, 1247], "attribut": [3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 94, 96, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 120, 122, 123, 124, 126, 132, 133, 135, 136, 137, 139, 142, 145, 146, 147, 163, 164, 165, 166, 167, 178, 191, 194, 224, 236, 249, 344, 421, 427, 428, 471, 494, 511, 540, 550, 553, 584, 585, 604, 685, 688, 689, 757, 829, 830, 831, 832, 908, 909, 910, 918, 928, 955, 956, 957, 958, 965, 972, 974, 984, 985, 986, 987, 988, 991, 995, 996, 997, 998, 999, 1000, 1008, 1010, 1036, 1037, 1058, 1060, 1061, 1063, 1064, 1065, 1066, 1067, 1068, 1069, 1071, 1076, 1086, 1087, 1088, 1089, 1090, 1091, 1094, 1095, 1096, 1107, 1109, 1124, 1161, 1163, 1233, 1234, 1235, 1236, 1237, 1238, 1247, 1250], "add_complexes_by_infer": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92], "complex": [3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 132, 133, 135, 139, 145, 157, 220, 225, 226, 227, 228, 229, 232, 234, 241, 260, 272, 273, 275, 433, 474, 512, 553, 554, 555, 708, 809, 824, 825, 850, 857, 858, 875, 876, 877, 909, 915, 918, 928, 1059, 1067, 1077, 1078, 1080, 1124, 1126, 1245, 1246, 1249], "none": [3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 96, 98, 100, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 122, 126, 127, 128, 132, 133, 135, 139, 145, 146, 149, 179, 182, 184, 185, 190, 191, 203, 204, 205, 225, 234, 249, 264, 267, 268, 270, 285, 291, 294, 296, 328, 342, 349, 351, 355, 356, 357, 358, 359, 360, 363, 366, 373, 375, 386, 387, 395, 399, 404, 406, 407, 410, 412, 437, 441, 442, 443, 446, 447, 448, 451, 452, 453, 462, 463, 472, 473, 474, 475, 512, 516, 517, 564, 648, 649, 650, 665, 666, 668, 669, 697, 707, 708, 718, 719, 723, 755, 772, 775, 790, 791, 794, 795, 801, 803, 815, 853, 873, 877, 878, 881, 882, 883, 890, 909, 915, 918, 928, 937, 938, 939, 942, 955, 958, 961, 962, 964, 965, 966, 967, 969, 971, 972, 974, 975, 976, 977, 978, 979, 980, 981, 982, 984, 992, 994, 995, 997, 998, 1000, 1008, 1021, 1025, 1031, 1032, 1036, 1037, 1041, 1042, 1053, 1058, 1059, 1060, 1062, 1063, 1066, 1067, 1072, 1073, 1074, 1076, 1077, 1078, 1079, 1080, 1081, 1082, 1083, 1087, 1089, 1091, 1094, 1096, 1097, 1098, 1100, 1101, 1104, 1105, 1108, 1112, 1115, 1116, 1117, 1118, 1119, 1120, 1122, 1123, 1124, 1125, 1126, 1129, 1130, 1132, 1134, 1135, 1139, 1140, 1146, 1161, 1163, 1169, 1177, 1187, 1188, 1199, 1224, 1225, 1247], "creat": [3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 127, 128, 132, 133, 135, 139, 145, 442, 447, 452, 877, 965, 1008, 1025, 1036, 1053, 1058, 1066, 1067, 1068, 1071, 1076, 1080, 1087, 1089, 1091, 1094, 1096, 1098, 1100, 1101, 1102, 1103, 1115, 1124, 1246], "silico": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 861], "infer": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 135, 212, 213, 893, 894, 1247], "add": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 135, 145, 170, 509, 974, 978, 1008, 1061, 1064, 1067, 1078, 1080, 1124, 1246, 1247, 1249, 1250], "them": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 127, 135, 139, 145, 564, 648, 845, 1008, 1067, 1079, 1089, 1096, 1112, 1246, 1247, 1250], "thi": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 94, 105, 120, 122, 126, 132, 133, 135, 139, 145, 179, 182, 184, 185, 192, 204, 212, 277, 294, 296, 306, 329, 347, 348, 353, 355, 371, 384, 395, 406, 408, 411, 413, 441, 442, 443, 446, 447, 448, 451, 452, 453, 463, 474, 498, 517, 553, 554, 555, 648, 649, 650, 665, 666, 718, 753, 754, 758, 759, 778, 781, 794, 835, 836, 845, 873, 890, 895, 909, 915, 918, 928, 945, 958, 960, 965, 967, 971, 973, 974, 978, 985, 986, 987, 988, 995, 997, 1008, 1021, 1036, 1037, 1039, 1040, 1041, 1042, 1043, 1044, 1045, 1046, 1047, 1048, 1050, 1051, 1059, 1063, 1066, 1067, 1068, 1071, 1076, 1077, 1078, 1080, 1087, 1089, 1091, 1094, 1096, 1098, 1099, 1100, 1101, 1104, 1105, 1108, 1112, 1115, 1117, 1119, 1122, 1124, 1127, 1129, 1137, 1141, 1161, 1224, 1225, 1226, 1229, 1233, 1234, 1235, 1236, 1237, 1238, 1239, 1246, 1247, 1249, 1250], "all_complex": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92], "all": [3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 118, 122, 126, 127, 133, 135, 139, 145, 182, 184, 190, 192, 213, 315, 326, 345, 355, 363, 366, 406, 407, 441, 442, 443, 446, 447, 448, 451, 452, 453, 460, 494, 532, 553, 641, 648, 649, 650, 665, 666, 718, 751, 755, 759, 778, 794, 873, 893, 909, 915, 918, 928, 958, 974, 978, 992, 997, 1008, 1021, 1036, 1037, 1048, 1058, 1059, 1060, 1067, 1068, 1078, 1081, 1087, 1089, 1091, 1094, 1096, 1098, 1105, 1108, 1112, 1115, 1124, 1126, 1129, 1139, 1140, 1142, 1144, 1152, 1163, 1196, 1221, 1225, 1233, 1243, 1246, 1249, 1250], "all_ent": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92], "entity_typ": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 98, 122, 123, 135, 139, 225, 790, 791, 958, 962, 969, 1066, 1067, 1072, 1077, 1247], "entiti": [3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 98, 135, 139, 145, 553, 554, 555, 958, 1066, 1067, 1072, 1077, 1115, 1122, 1127, 1247, 1249, 1250], "all_mirna": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92], "mirna": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 122, 135, 139, 145, 260, 261, 627, 637, 639, 641, 888, 1017, 1066, 1067, 1077, 1246, 1249, 1250], "all_protein": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92], "all_ref": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92], "some": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 135, 139, 145, 553, 648, 650, 972, 997, 1046, 1051, 1060, 1067, 1078, 1080, 1087, 1089, 1091, 1094, 1096, 1100, 1101, 1104, 1112, 1246, 1247, 1250], "contain": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 126, 133, 135, 139, 145, 197, 270, 340, 355, 366, 430, 442, 447, 452, 474, 509, 524, 649, 717, 782, 834, 857, 863, 895, 945, 958, 999, 1112, 1115, 1226, 1233, 1234, 1235, 1236, 1237, 1238, 1246, 1247, 1250], "refer": [3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 118, 122, 126, 131, 132, 135, 136, 145, 184, 185, 212, 213, 342, 357, 408, 437, 471, 479, 511, 517, 534, 540, 604, 648, 649, 650, 654, 679, 713, 787, 909, 915, 918, 928, 965, 974, 977, 992, 1008, 1011, 1012, 1015, 1016, 1050, 1051, 1129, 1130, 1135, 1163, 1173, 1194, 1245, 1246, 1250], "The": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 94, 96, 120, 122, 127, 128, 131, 132, 133, 134, 135, 139, 145, 188, 209, 211, 212, 213, 214, 225, 226, 229, 231, 232, 244, 252, 270, 306, 331, 336, 337, 340, 345, 355, 356, 359, 364, 366, 384, 406, 411, 442, 447, 452, 463, 479, 505, 517, 592, 596, 649, 669, 707, 708, 718, 719, 723, 727, 759, 778, 791, 793, 815, 819, 820, 827, 845, 854, 857, 858, 891, 892, 903, 909, 913, 915, 918, 928, 945, 958, 972, 992, 999, 1008, 1019, 1021, 1030, 1036, 1037, 1053, 1059, 1060, 1063, 1066, 1067, 1068, 1071, 1078, 1080, 1087, 1089, 1091, 1094, 1096, 1100, 1101, 1104, 1105, 1108, 1115, 1124, 1129, 1161, 1177, 1199, 1225, 1229, 1233, 1234, 1235, 1236, 1237, 1238, 1244, 1245, 1246, 1249, 1250], "field": [3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 123, 135, 136, 137, 147, 163, 164, 165, 166, 167, 178, 187, 224, 236, 264, 265, 267, 294, 302, 342, 344, 346, 352, 355, 357, 366, 404, 427, 428, 442, 443, 447, 448, 452, 453, 471, 511, 540, 550, 604, 643, 644, 668, 669, 685, 688, 689, 757, 772, 829, 830, 831, 832, 834, 845, 908, 909, 910, 915, 918, 927, 928, 955, 956, 957, 996, 999, 1036, 1069, 1086, 1088, 1090, 1093, 1095, 1107, 1109, 1247, 1250], "alwai": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 346, 352, 474, 479, 1025, 1067, 1080, 1124, 1247], "pmid": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 224, 780, 781, 782, 783, 952, 991, 1247], "pubm": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 132, 251, 344, 384, 408, 496, 497, 713, 992, 1127, 1247], "collect": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 121, 131, 133, 135, 145, 146, 150, 192, 288, 331, 359, 364, 366, 441, 446, 451, 503, 648, 649, 650, 1008, 1247, 1250], "across": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 135, 145, 270, 1247], "record": [3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 135, 139, 145, 191, 204, 212, 213, 230, 233, 244, 249, 250, 254, 255, 260, 288, 316, 342, 366, 384, 440, 441, 442, 443, 445, 446, 447, 448, 450, 451, 452, 453, 478, 527, 553, 665, 671, 672, 673, 675, 680, 721, 722, 724, 725, 726, 727, 728, 764, 774, 781, 783, 845, 921, 1087, 1091, 1124, 1250], "list": [3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 105, 122, 126, 127, 128, 132, 133, 135, 139, 145, 157, 168, 169, 170, 180, 181, 184, 185, 187, 188, 189, 191, 194, 199, 201, 204, 205, 212, 213, 214, 222, 228, 230, 233, 245, 249, 250, 252, 253, 254, 255, 257, 258, 260, 261, 264, 265, 266, 267, 268, 285, 302, 303, 308, 309, 312, 313, 314, 315, 325, 326, 342, 355, 356, 357, 358, 360, 362, 363, 366, 373, 377, 382, 384, 389, 404, 406, 407, 421, 424, 430, 442, 447, 452, 483, 484, 494, 501, 502, 504, 505, 517, 527, 533, 534, 536, 552, 555, 564, 579, 584, 585, 587, 588, 589, 590, 594, 595, 596, 665, 666, 668, 669, 671, 672, 673, 674, 675, 686, 707, 711, 713, 714, 721, 722, 724, 725, 726, 727, 728, 732, 734, 744, 746, 748, 749, 750, 759, 772, 780, 781, 782, 787, 790, 791, 792, 794, 800, 820, 825, 833, 834, 835, 840, 845, 851, 853, 854, 856, 857, 858, 859, 873, 878, 879, 893, 894, 898, 904, 905, 909, 913, 915, 918, 928, 944, 945, 947, 950, 957, 958, 971, 972, 974, 977, 997, 1008, 1036, 1058, 1059, 1060, 1066, 1067, 1075, 1081, 1087, 1089, 1091, 1094, 1096, 1097, 1098, 1100, 1101, 1104, 1105, 1108, 1112, 1115, 1124, 1129, 1130, 1135, 1161, 1163, 1172, 1177, 1187, 1193, 1194, 1196, 1199, 1202, 1221, 1246, 1247, 1249, 1250], "annotate_complex": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92], "cplex": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 809, 1247], "singl": [3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 127, 135, 139, 145, 193, 197, 204, 212, 312, 313, 443, 448, 453, 553, 554, 555, 782, 974, 1058, 1059, 1060, 1067, 1074, 1087, 1089, 1091, 1094, 1096, 1098, 1105, 1202, 1245], "brows": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 139, 1005, 1245], "start": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 123, 136, 137, 139, 145, 147, 163, 164, 165, 166, 167, 178, 224, 236, 344, 427, 428, 471, 511, 540, 550, 604, 648, 650, 685, 688, 689, 707, 717, 757, 829, 830, 831, 832, 908, 910, 955, 956, 957, 975, 979, 996, 999, 1069, 1086, 1088, 1090, 1095, 1107, 1109, 1112, 1169, 1246, 1247, 1249], "0": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 122, 123, 135, 136, 137, 139, 147, 163, 164, 165, 166, 167, 178, 195, 224, 236, 252, 268, 278, 344, 427, 428, 437, 471, 491, 511, 519, 527, 540, 550, 604, 611, 685, 688, 689, 757, 829, 830, 831, 832, 845, 856, 908, 910, 955, 956, 957, 962, 965, 969, 996, 999, 1053, 1069, 1086, 1088, 1090, 1095, 1107, 1109, 1112, 1161, 1169, 1225, 1245, 1246, 1247], "print": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 139, 151, 152, 903, 1041, 1042, 1043, 1044, 1045, 1046, 1115, 1161, 1169, 1187, 1199, 1247], "inform": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 100, 131, 135, 139, 145, 151, 152, 192, 227, 257, 355, 430, 533, 663, 713, 753, 774, 833, 834, 835, 836, 903, 904, 906, 958, 978, 1008, 1045, 1046, 1053, 1067, 1079, 1094, 1100, 1101, 1104, 1105, 1115, 1161, 1169, 1245, 1250], "tabl": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 127, 139, 145, 267, 318, 359, 364, 375, 376, 377, 378, 432, 433, 441, 446, 451, 468, 469, 509, 529, 587, 588, 589, 590, 629, 666, 711, 732, 751, 775, 787, 792, 794, 795, 845, 861, 891, 892, 895, 944, 950, 958, 960, 963, 967, 968, 971, 972, 1066, 1067, 1068, 1081, 1082, 1083, 1087, 1089, 1091, 1096, 1098, 1102, 1169, 1177, 1187, 1199, 1245, 1246, 1248, 1249], "present": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 123, 135, 136, 137, 139, 145, 147, 163, 164, 165, 166, 167, 171, 178, 224, 236, 344, 384, 427, 428, 471, 511, 540, 550, 604, 685, 688, 689, 757, 829, 830, 831, 832, 908, 910, 955, 956, 957, 978, 996, 997, 999, 1069, 1086, 1088, 1090, 1095, 1107, 1109, 1246, 1247], "categori": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 139, 713, 863, 955, 958, 1059, 1245, 1249, 1250], "ascii": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 139, 267, 1177, 1199], "termin": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 139, 1053, 1247], "If": [3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 128, 132, 133, 135, 139, 145, 212, 225, 267, 294, 349, 351, 355, 363, 406, 407, 410, 412, 534, 564, 648, 649, 650, 665, 666, 668, 671, 672, 673, 674, 675, 718, 758, 759, 794, 845, 877, 878, 890, 909, 942, 955, 958, 972, 974, 978, 997, 1058, 1059, 1060, 1066, 1067, 1068, 1078, 1081, 1087, 1089, 1091, 1096, 1112, 1115, 1163, 1188, 1246, 1247, 1250], "one": [3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 127, 132, 133, 134, 135, 139, 145, 179, 181, 190, 268, 294, 296, 312, 366, 406, 407, 408, 414, 415, 416, 417, 442, 443, 447, 448, 452, 453, 479, 516, 517, 533, 553, 554, 555, 649, 721, 722, 724, 725, 726, 727, 728, 751, 754, 782, 845, 892, 895, 903, 904, 909, 918, 928, 945, 960, 963, 967, 968, 970, 971, 972, 974, 978, 992, 1008, 1058, 1060, 1066, 1067, 1068, 1078, 1079, 1080, 1087, 1089, 1091, 1094, 1096, 1098, 1099, 1100, 1101, 1104, 1108, 1112, 1115, 1124, 1139, 1140, 1144, 1161, 1163, 1172, 1202, 1205, 1229, 1236, 1237, 1246, 1250], "multipl": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 105, 127, 132, 135, 139, 190, 212, 346, 347, 348, 350, 352, 353, 443, 448, 453, 517, 1059, 1067, 1080, 1098, 1099, 1115, 1246, 1247, 1250], "each": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 126, 132, 133, 135, 139, 145, 191, 204, 205, 212, 213, 214, 228, 229, 230, 232, 233, 241, 264, 267, 355, 357, 362, 442, 443, 447, 448, 452, 453, 478, 517, 533, 534, 553, 668, 707, 709, 713, 717, 727, 754, 764, 765, 825, 904, 909, 1025, 1059, 1067, 1068, 1112, 1115, 1124, 1169, 1172, 1246, 1247, 1249, 1250], "proceed": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 139], "next": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 139, 505, 890, 1029, 1066, 1067, 1068, 1247], "onc": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 135, 139, 179, 1019, 1036, 1067, 1080, 1112, 1246, 1247], "hit": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 139], "goe": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 139, 1247], "through": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 139, 266, 992, 1169, 1246, 1247], "level": [3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 105, 132, 133, 135, 139, 143, 145, 312, 314, 344, 346, 347, 348, 350, 352, 353, 414, 415, 416, 417, 429, 443, 448, 453, 650, 671, 672, 673, 674, 675, 707, 759, 851, 863, 879, 909, 918, 928, 958, 978, 985, 986, 987, 988, 1008, 1018, 1025, 1039, 1040, 1041, 1042, 1043, 1044, 1045, 1046, 1047, 1048, 1050, 1051, 1058, 1059, 1060, 1067, 1108, 1137, 1246, 1250], "primari": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 132, 133, 135, 912, 999, 1008, 1067, 1078, 1246, 1247], "arg": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 128, 135, 145, 179, 181, 182, 184, 185, 188, 189, 190, 191, 197, 203, 204, 205, 209, 211, 212, 213, 214, 225, 226, 227, 228, 229, 230, 231, 232, 233, 234, 249, 252, 265, 291, 292, 294, 306, 345, 355, 356, 357, 358, 359, 360, 363, 364, 366, 468, 469, 472, 532, 534, 561, 564, 565, 567, 568, 569, 571, 572, 575, 668, 669, 714, 718, 719, 759, 764, 765, 778, 823, 824, 827, 845, 851, 854, 857, 858, 877, 878, 903, 905, 945, 955, 958, 999, 1029, 1060, 1066, 1067, 1068, 1078, 1080, 1087, 1089, 1091, 1093, 1096, 1108, 1161, 1164, 1165, 1166, 1167, 1168, 1170, 1171, 1173, 1174, 1175, 1176, 1177, 1178, 1179, 1180, 1181, 1182, 1183, 1184, 1185, 1186, 1188, 1189, 1190, 1191, 1192, 1193, 1194, 1195, 1196, 1197, 1198, 1199, 1200, 1201, 1203, 1204, 1205, 1206, 1207, 1208, 1209, 1210, 1211, 1212, 1213, 1214, 1215, 1216, 1217, 1218, 1219, 1220, 1221], "select": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 127, 128, 135, 139, 145, 213, 958, 1037, 1058, 1098, 1099, 1129, 1245, 1250], "doesn": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 145, 1067, 1078, 1246, 1247], "t": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 145, 267, 442, 447, 452, 553, 554, 555, 649, 861, 1038, 1039, 1042, 1043, 1066, 1067, 1078, 1087, 1089, 1091, 1096, 1246, 1247, 1248, 1250], "have": [3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 127, 135, 139, 145, 187, 408, 648, 650, 854, 857, 958, 972, 1008, 1015, 1040, 1046, 1051, 1058, 1066, 1067, 1087, 1089, 1091, 1096, 1112, 1115, 1124, 1246, 1247, 1249, 1250], "string": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 96, 122, 127, 132, 133, 135, 139, 145, 227, 265, 266, 267, 294, 366, 392, 443, 448, 453, 463, 648, 650, 708, 778, 814, 903, 905, 909, 915, 918, 928, 955, 974, 1030, 1036, 1053, 1058, 1066, 1067, 1072, 1098, 1112, 1115, 1119, 1122, 1127, 1161, 1163, 1177, 1205, 1247], "consid": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 132, 133, 135, 139, 145, 474, 942, 992, 1058, 1247], "tupl": [3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 122, 123, 127, 133, 135, 136, 137, 139, 145, 147, 167, 168, 169, 170, 171, 178, 179, 180, 184, 185, 187, 190, 191, 205, 214, 222, 224, 225, 226, 228, 229, 231, 232, 234, 236, 239, 240, 244, 245, 249, 250, 252, 253, 254, 255, 257, 258, 260, 261, 264, 270, 294, 302, 303, 312, 313, 314, 315, 325, 331, 332, 333, 334, 335, 336, 337, 344, 355, 356, 357, 358, 360, 362, 363, 366, 375, 377, 382, 389, 390, 400, 401, 402, 404, 406, 407, 408, 410, 411, 412, 414, 415, 416, 417, 424, 429, 430, 443, 448, 453, 471, 477, 478, 494, 511, 527, 531, 533, 540, 550, 564, 579, 592, 604, 611, 648, 650, 663, 665, 666, 668, 669, 679, 680, 685, 686, 688, 689, 709, 711, 714, 718, 751, 757, 759, 772, 814, 818, 819, 820, 821, 825, 833, 834, 835, 836, 845, 851, 853, 854, 856, 857, 858, 861, 879, 901, 904, 908, 909, 910, 913, 915, 918, 928, 944, 945, 947, 950, 956, 958, 974, 977, 978, 996, 997, 1030, 1036, 1058, 1060, 1067, 1068, 1069, 1072, 1093, 1094, 1095, 1098, 1105, 1107, 1108, 1109, 1112, 1126, 1141, 1229, 1233, 1234, 1235, 1236, 1237, 1238, 1241, 1244, 1247], "valu": [3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 123, 133, 135, 136, 137, 139, 145, 147, 163, 164, 165, 166, 167, 178, 179, 181, 182, 188, 190, 194, 203, 211, 220, 221, 222, 224, 227, 236, 243, 244, 245, 249, 251, 266, 267, 294, 344, 359, 364, 375, 386, 387, 394, 400, 401, 402, 406, 407, 408, 410, 411, 412, 413, 414, 415, 416, 417, 427, 428, 443, 448, 453, 468, 469, 471, 477, 511, 531, 532, 534, 540, 550, 564, 592, 604, 611, 649, 650, 666, 668, 685, 688, 689, 707, 708, 709, 713, 717, 718, 723, 754, 757, 759, 764, 765, 778, 794, 829, 830, 831, 832, 854, 857, 858, 859, 861, 873, 879, 905, 906, 908, 909, 910, 915, 918, 928, 930, 955, 956, 957, 958, 972, 974, 985, 986, 987, 988, 996, 997, 999, 1008, 1036, 1039, 1040, 1041, 1042, 1043, 1044, 1045, 1046, 1047, 1048, 1050, 1051, 1053, 1059, 1060, 1067, 1068, 1069, 1078, 1080, 1086, 1087, 1088, 1089, 1090, 1091, 1094, 1095, 1096, 1100, 1101, 1104, 1105, 1107, 1109, 1112, 1143, 1144, 1172, 1234, 1236, 1237, 1247, 1250], "In": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 127, 135, 145, 329, 406, 407, 408, 553, 554, 555, 751, 754, 759, 861, 997, 1008, 1025, 1036, 1067, 1078, 1080, 1089, 1096, 1098, 1112, 1115, 1153, 1246, 1247], "former": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 791, 955, 972, 1247, 1249], "case": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 135, 243, 244, 245, 442, 443, 447, 448, 452, 453, 517, 759, 955, 958, 997, 1016, 1037, 1059, 1066, 1067, 1078, 1079, 1080, 1087, 1089, 1091, 1094, 1096, 1105, 1112, 1115, 1246, 1247, 1250], "latter": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 135, 340, 443, 448, 453, 708, 972, 1067, 1247], "limit": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 135, 139, 190, 498, 517, 553, 554, 555, 648, 650, 854, 857, 858, 955, 958, 1247], "ar": [3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 96, 122, 126, 127, 131, 132, 133, 135, 139, 145, 179, 181, 182, 190, 203, 211, 213, 214, 220, 221, 222, 225, 226, 227, 228, 229, 230, 231, 232, 233, 234, 249, 267, 296, 302, 306, 325, 329, 331, 336, 337, 349, 351, 355, 356, 384, 398, 400, 401, 402, 406, 407, 408, 410, 411, 412, 414, 415, 416, 417, 419, 429, 430, 441, 446, 451, 468, 469, 479, 516, 524, 532, 534, 553, 554, 555, 561, 565, 567, 568, 569, 571, 572, 575, 611, 650, 665, 666, 668, 707, 708, 709, 754, 758, 759, 764, 765, 778, 781, 782, 794, 815, 823, 824, 825, 845, 858, 879, 893, 898, 905, 909, 915, 918, 928, 945, 955, 958, 960, 967, 971, 978, 1008, 1012, 1015, 1016, 1029, 1036, 1058, 1060, 1067, 1068, 1078, 1080, 1087, 1089, 1091, 1094, 1096, 1100, 1101, 1104, 1105, 1112, 1115, 1124, 1129, 1134, 1135, 1161, 1233, 1234, 1235, 1236, 1237, 1238, 1243, 1245, 1246, 1248, 1249, 1250], "suppos": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 1053], "us": [3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 96, 97, 122, 127, 128, 132, 135, 139, 145, 179, 191, 192, 194, 197, 211, 213, 214, 260, 346, 347, 348, 350, 352, 353, 359, 364, 441, 442, 443, 446, 447, 448, 451, 452, 453, 468, 469, 472, 498, 517, 648, 649, 650, 665, 666, 669, 671, 672, 673, 674, 675, 758, 759, 774, 778, 782, 794, 854, 857, 858, 894, 955, 958, 960, 967, 971, 972, 984, 1008, 1012, 1029, 1030, 1036, 1042, 1046, 1051, 1058, 1059, 1066, 1067, 1068, 1070, 1078, 1079, 1080, 1087, 1089, 1091, 1094, 1096, 1100, 1101, 1104, 1105, 1108, 1115, 1137, 1161, 1226, 1229, 1233, 1234, 1235, 1236, 1237, 1238, 1239, 1241, 1243, 1244, 1246, 1250], "e": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 122, 127, 128, 135, 139, 145, 267, 302, 355, 356, 357, 358, 359, 360, 395, 424, 441, 443, 446, 448, 451, 453, 551, 553, 648, 649, 650, 775, 782, 894, 918, 958, 973, 978, 992, 997, 1008, 1058, 1060, 1066, 1067, 1073, 1074, 1098, 1112, 1115, 1124, 1140, 1172, 1229, 1239, 1241, 1244, 1245, 1246, 1249, 1250], "g": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 122, 127, 128, 135, 139, 145, 267, 395, 424, 441, 446, 451, 551, 553, 648, 649, 650, 775, 894, 918, 958, 978, 1008, 1058, 1066, 1073, 1074, 1098, 1115, 1140, 1172, 1246, 1247, 1249, 1250], "500": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 366, 410, 412, 516, 517, 909, 915, 918, 928, 1247], "250": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92], "skip": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 909, 1224], "everyth": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 517, 1067, 1078, 1247], "befor": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 408, 1008, 1053, 1115, 1247], "250th": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92], "pass": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 135, 139, 145, 266, 893, 909, 915, 918, 928, 955, 972, 1066, 1067, 1112, 1169, 1177, 1199, 1247], "info": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 139, 1008, 1161, 1169, 1245, 1250], "complex_infer": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92], "default": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 122, 135, 139, 145, 213, 294, 306, 355, 384, 406, 407, 408, 442, 447, 452, 517, 648, 649, 650, 665, 666, 668, 669, 671, 672, 673, 674, 675, 727, 781, 794, 890, 909, 915, 918, 928, 958, 997, 1008, 1018, 1019, 1024, 1031, 1039, 1040, 1041, 1042, 1043, 1044, 1045, 1046, 1047, 1048, 1050, 1051, 1058, 1067, 1078, 1080, 1087, 1091, 1094, 1100, 1101, 1104, 1105, 1112, 1115, 1141, 1144, 1146, 1229, 1233, 1234, 1235, 1236, 1237, 1238, 1239, 1244, 1246, 1247, 1250], "exist": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 119, 135, 139, 145, 294, 654, 794, 890, 1029, 1032, 1036, 1037, 1041, 1062, 1067, 1071, 1094, 1102, 1105, 1124, 1247], "gener": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 96, 122, 128, 132, 135, 139, 169, 244, 264, 267, 268, 270, 331, 332, 333, 334, 335, 336, 337, 347, 348, 353, 663, 671, 672, 673, 674, 675, 744, 818, 819, 820, 821, 901, 921, 958, 978, 994, 1008, 1112, 1247, 1249, 1250], "demand": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 1019, 1087, 1089, 1091, 1094, 1096, 1105, 1247], "accord": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 135, 139, 145, 536, 863, 984, 1112, 1229, 1247], "": [3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 122, 133, 135, 139, 145, 294, 355, 564, 663, 668, 861, 901, 958, 972, 974, 978, 997, 999, 1046, 1066, 1067, 1093, 1246, 1247, 1249], "current": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 119, 135, 145, 152, 366, 408, 985, 986, 987, 988, 1005, 1053, 1062, 1066, 1094, 1100, 1101, 1104, 1105, 1115, 1226, 1246, 1247, 1250], "valid": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 135, 145, 185, 252, 509, 641, 775, 909, 985, 986, 987, 988, 1067], "won": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 145, 553, 554, 555, 649, 1039, 1042, 1043, 1067, 1087, 1089, 1091, 1096, 1247], "iter": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 122, 128, 133, 145, 187, 384, 856, 909, 918, 921, 928, 978, 997, 1008, 1053, 1060, 1067, 1087, 1089, 1091, 1094, 1096, 1104, 1105, 1115, 1117, 1119, 1122, 1126, 1127, 1139, 1140, 1247], "yield": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 100, 101, 102, 103, 104, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 122, 135, 191, 239, 244, 407, 443, 448, 453, 553, 554, 555, 663, 679, 680, 814, 815, 901, 909, 912, 1119, 1122, 1126, 1127, 1141, 1247], "coverag": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 836, 1018, 1250], "calcul": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 355, 524], "proport": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92], "least": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 135, 139, 1247], "arbitrari": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 265, 1247, 1250], "curation_effort": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 145, 977, 1247], "count": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 122, 123, 135, 136, 137, 139, 145, 147, 163, 164, 165, 166, 167, 178, 224, 236, 344, 427, 428, 471, 511, 540, 550, 604, 685, 688, 689, 757, 829, 830, 831, 832, 908, 910, 955, 956, 957, 996, 999, 1069, 1086, 1088, 1090, 1095, 1107, 1109, 1247], "pair": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 126, 127, 135, 139, 145, 169, 270, 294, 527, 553, 579, 654, 666, 716, 717, 719, 879, 912, 913, 978, 997, 1036, 1087, 1089, 1091, 1094, 1096, 1100, 1104, 1247, 1250], "get_nam": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 1058, 1060, 1247], "consist": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 132, 145, 727, 957, 1053, 1246, 1247], "uniform": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 139], "might": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 97, 126, 135, 139, 442, 443, 447, 448, 452, 453, 553, 554, 555, 721, 722, 724, 725, 726, 728, 791, 958, 1008, 1067, 1115, 1124, 1247, 1250], "exampl": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 127, 131, 145, 411, 448, 453, 909, 915, 918, 928, 984, 1018, 1039, 1040, 1041, 1042, 1043, 1044, 1045, 1046, 1047, 1048, 1050, 1051, 1058, 1115, 1124, 1161, 1245, 1246], "cell_typ": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 604], "expression_level": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92], "score": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 139, 277, 540, 665, 666, 673, 675, 854, 857, 858, 861, 1090, 1091, 1247], "static": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 139, 972, 1067, 1161], "get_reference_set": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92], "use_complex": [3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94], "fals": [3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 98, 126, 127, 128, 132, 133, 135, 139, 145, 149, 168, 169, 170, 188, 190, 191, 211, 212, 214, 241, 249, 260, 261, 268, 275, 287, 306, 312, 314, 315, 331, 332, 333, 334, 335, 336, 337, 342, 346, 347, 348, 350, 352, 353, 358, 360, 363, 366, 389, 390, 398, 403, 405, 408, 437, 441, 446, 451, 516, 527, 555, 564, 602, 641, 649, 665, 666, 668, 671, 672, 673, 674, 675, 697, 714, 727, 759, 762, 775, 787, 788, 793, 794, 818, 819, 820, 821, 836, 845, 882, 893, 894, 913, 918, 930, 940, 941, 955, 961, 965, 969, 977, 982, 995, 1003, 1008, 1019, 1036, 1039, 1040, 1041, 1043, 1044, 1045, 1046, 1047, 1048, 1050, 1051, 1053, 1058, 1060, 1066, 1067, 1078, 1079, 1080, 1087, 1089, 1091, 1094, 1096, 1098, 1100, 1101, 1104, 1112, 1115, 1124, 1144, 1146, 1247], "9606": [3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 100, 122, 126, 135, 145, 175, 176, 179, 184, 185, 187, 188, 189, 190, 201, 211, 214, 218, 219, 220, 221, 222, 225, 226, 227, 228, 229, 230, 231, 232, 233, 243, 244, 245, 275, 277, 278, 283, 298, 299, 300, 308, 309, 321, 322, 328, 345, 346, 349, 351, 352, 375, 376, 378, 386, 387, 397, 398, 406, 407, 408, 409, 419, 522, 527, 532, 541, 594, 595, 596, 602, 611, 613, 614, 615, 616, 617, 629, 630, 631, 632, 633, 634, 635, 646, 677, 679, 718, 719, 734, 746, 748, 750, 754, 764, 765, 772, 812, 813, 823, 824, 838, 839, 840, 841, 843, 844, 845, 848, 854, 856, 857, 858, 869, 881, 882, 886, 909, 912, 915, 918, 920, 923, 924, 927, 928, 931, 932, 935, 936, 937, 938, 939, 940, 941, 942, 960, 961, 965, 971, 972, 974, 975, 979, 980, 982, 994, 1058, 1059, 1061, 1062, 1063, 1064, 1077, 1087, 1089, 1091, 1094, 1096, 1100, 1101, 1104, 1105, 1124, 1139, 1140, 1142, 1144, 1247], "swissprot_onli": [3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 1112], "true": [3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 98, 126, 127, 133, 135, 139, 145, 157, 184, 185, 188, 190, 212, 213, 222, 260, 261, 272, 306, 328, 346, 352, 366, 384, 424, 437, 469, 482, 483, 484, 516, 517, 532, 564, 602, 641, 665, 666, 671, 672, 673, 674, 675, 714, 718, 734, 745, 746, 749, 767, 768, 781, 782, 802, 810, 812, 813, 815, 840, 845, 854, 857, 865, 866, 867, 881, 909, 913, 915, 917, 918, 919, 920, 923, 924, 927, 928, 931, 932, 955, 958, 965, 972, 1003, 1036, 1037, 1038, 1040, 1042, 1044, 1046, 1048, 1051, 1053, 1058, 1060, 1062, 1063, 1066, 1067, 1078, 1079, 1080, 1087, 1089, 1091, 1094, 1096, 1097, 1098, 1099, 1100, 1101, 1104, 1105, 1112, 1115, 1124, 1144, 1153, 1247], "retriev": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 119, 135, 139, 145, 158, 181, 187, 189, 190, 207, 212, 220, 221, 222, 240, 243, 245, 249, 250, 251, 252, 253, 254, 255, 257, 258, 272, 280, 281, 285, 302, 303, 316, 325, 331, 346, 347, 348, 350, 352, 353, 357, 360, 363, 366, 386, 387, 392, 393, 394, 395, 408, 433, 463, 494, 538, 551, 553, 555, 614, 616, 617, 627, 637, 639, 641, 663, 665, 686, 713, 720, 721, 722, 723, 724, 725, 726, 727, 728, 793, 794, 833, 834, 835, 836, 901, 911, 918, 921, 972, 1058, 1062, 1067, 1112, 1163, 1188, 1247], "which": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 96, 97, 100, 118, 126, 127, 128, 134, 135, 139, 145, 249, 252, 296, 355, 406, 411, 553, 649, 665, 666, 707, 753, 782, 854, 857, 945, 977, 1008, 1012, 1039, 1040, 1043, 1044, 1045, 1046, 1047, 1048, 1050, 1051, 1058, 1060, 1067, 1068, 1071, 1102, 1112, 1115, 1124, 1129, 1134, 1135, 1229, 1233, 1234, 1235, 1236, 1237, 1238, 1241, 1243, 1244, 1245, 1246, 1249, 1250], "potenti": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 1008, 1067, 1247], "typic": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 1029, 1067, 1078, 1080, 1246, 1247], "proteom": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 118, 128, 1067, 1096, 1098, 1247], "organ": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 127, 128, 131, 145, 178, 179, 180, 182, 184, 185, 187, 188, 189, 190, 201, 211, 213, 214, 218, 219, 220, 221, 222, 225, 226, 227, 228, 229, 230, 231, 232, 233, 234, 243, 244, 245, 275, 277, 278, 283, 298, 299, 300, 308, 309, 321, 322, 328, 345, 346, 349, 351, 352, 363, 375, 376, 378, 382, 386, 387, 397, 398, 403, 404, 405, 406, 407, 408, 409, 419, 424, 429, 430, 437, 468, 469, 522, 527, 541, 560, 561, 562, 563, 565, 566, 567, 568, 569, 570, 571, 572, 573, 574, 575, 594, 595, 596, 602, 611, 613, 614, 615, 616, 617, 629, 630, 631, 632, 633, 634, 635, 646, 648, 649, 650, 665, 666, 677, 679, 708, 718, 719, 734, 735, 744, 745, 752, 754, 764, 765, 772, 812, 813, 823, 824, 838, 839, 840, 841, 843, 844, 845, 848, 859, 869, 881, 882, 894, 898, 909, 912, 915, 918, 920, 923, 924, 927, 928, 930, 931, 932, 935, 936, 937, 938, 939, 940, 941, 942, 972, 974, 995, 1058, 1061, 1062, 1063, 1064, 1066, 1067, 1068, 1078, 1080, 1087, 1089, 1091, 1094, 1096, 1098, 1099, 1100, 1101, 1104, 1105, 1129, 1130, 1134, 1135, 1139, 1140, 1142, 1144, 1146, 1245, 1246, 1249, 1250], "option": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 127, 132, 135, 139, 145, 190, 234, 406, 407, 441, 443, 446, 448, 451, 453, 463, 553, 554, 555, 794, 1066, 1067, 1072, 1078, 1080, 1108, 1112, 1115, 1141, 1144, 1177, 1199, 1247, 1250], "get_subset": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 955, 1247], "subset": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 1015], "filter": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 98, 122, 131, 133, 139, 145, 187, 191, 331, 332, 334, 336, 1008, 1087, 1089, 1091, 1096, 1247], "element": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 122, 126, 127, 134, 135, 139, 145, 267, 340, 472, 751, 759, 782, 787, 895, 909, 915, 918, 928, 958, 977, 1058, 1067, 1098, 1115, 1247], "get_subset_bool_arrai": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92], "reference_set": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92], "boolean": [3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 135, 723, 965, 1247], "vector": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92], "presenc": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 135], "absenc": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 135], "simplest": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92], "kind": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 135, 139, 909, 918, 928, 1067, 1068, 1077, 1247, 1250], "match": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 135, 139, 145, 201, 532, 1067, 1078, 1080, 1087, 1091, 1094, 1105, 1141, 1247, 1250], "possibl": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 133, 135, 145, 190, 244, 386, 387, 468, 754, 778, 1060, 1066, 1067, 1078, 1080, 1081, 1087, 1094, 1100, 1101, 1104, 1105, 1112, 1119, 1122, 1127, 1149, 1245, 1247], "get_valu": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 1247], "exclude_non": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92], "call": [3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 96, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 122, 132, 135, 145, 292, 410, 412, 669, 893, 894, 955, 957, 984, 994, 1036, 1037, 1066, 1067, 1078, 1080, 1115, 1124, 1246, 1247], "tell": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 296, 940, 941, 942, 1058, 1060, 1066, 1067, 1247, 1250], "macrophag": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 1011, 1247], "epithelial_cel": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92], "label": [3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 122, 133, 135, 139, 145, 146, 147, 178, 179, 180, 181, 182, 663, 835, 836, 905, 906, 960, 967, 972, 985, 986, 987, 988, 999, 1008, 1021, 1029, 1036, 1037, 1059, 1066, 1067, 1073, 1074, 1075, 1094, 1108, 1124, 1129, 1161, 1225, 1229, 1233, 1234, 1235, 1236, 1237, 1238, 1247], "same": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 122, 127, 132, 135, 139, 145, 260, 406, 411, 441, 443, 446, 448, 451, 453, 516, 665, 707, 791, 895, 905, 909, 915, 918, 928, 945, 958, 960, 965, 967, 971, 974, 995, 1008, 1066, 1067, 1078, 1080, 1081, 1087, 1089, 1091, 1094, 1096, 1105, 1115, 1124, 1247], "human": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 122, 127, 128, 135, 139, 182, 190, 211, 212, 213, 214, 220, 221, 222, 225, 226, 227, 228, 229, 230, 231, 232, 233, 234, 243, 244, 245, 326, 345, 346, 349, 351, 352, 403, 404, 405, 406, 407, 408, 419, 424, 429, 430, 472, 477, 478, 480, 494, 498, 529, 555, 648, 649, 650, 665, 666, 716, 744, 745, 752, 754, 764, 765, 813, 816, 823, 824, 845, 861, 873, 893, 894, 898, 918, 963, 1066, 1067, 1077, 1245, 1246, 1250], "readabl": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 139, 716, 1067, 1077, 1247], "py": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 126, 135, 139, 145, 1008], "attr": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 122, 132, 133, 135, 139, 145, 191, 974, 1008, 1093, 1119, 1122, 1126], "infer_complex": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92], "load_data": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 127, 128, 994], "load_protein": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92], "entir": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 1247], "make_df": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 139, 145, 1247], "rebuild": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92], "compil": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 126, 179, 1247, 1248], "panda": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 139, 145, 168, 169, 170, 181, 182, 270, 306, 312, 314, 315, 331, 332, 333, 334, 335, 336, 337, 345, 389, 545, 671, 672, 673, 674, 675, 714, 765, 793, 794, 818, 819, 820, 821, 1082, 1112, 1245, 1246, 1249, 1250], "datafram": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 139, 145, 168, 169, 170, 181, 270, 306, 312, 314, 315, 331, 332, 333, 334, 335, 336, 337, 345, 389, 390, 441, 443, 446, 448, 451, 453, 545, 665, 666, 671, 672, 673, 674, 675, 714, 765, 793, 794, 818, 819, 820, 821, 913, 1067, 1082, 1087, 1089, 1091, 1094, 1096, 1100, 1105, 1245, 1246], "frame": [3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 98, 139, 145, 168, 169, 170, 181, 182, 270, 306, 312, 314, 315, 331, 332, 333, 334, 335, 336, 337, 345, 389, 390, 441, 443, 446, 448, 451, 453, 665, 666, 671, 672, 673, 674, 675, 714, 765, 818, 819, 820, 821, 977, 1067, 1087, 1089, 1091, 1094, 1096, 1100, 1105, 1245, 1246, 1249], "assign": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 94, 120, 126, 135, 139, 145, 1063, 1247, 1250], "df": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 98, 139, 448, 453, 1087, 1089, 1091, 1094, 1096, 1105, 1247], "numof_ent": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92], "numof_record": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92], "total": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 147, 213, 366, 1053, 1115, 1236, 1237], "numof_refer": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92], "_process_method": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 994], "reload": [3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 94, 105, 120, 132, 133, 135, 139, 145, 1019, 1058, 1059, 1060, 1063, 1067, 1247], "set_method": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 127, 128, 994], "look": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 127, 139, 145, 891, 892, 895, 955, 957, 972, 994, 1067, 1078, 1112, 1141], "up": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 139, 145, 347, 348, 353, 407, 411, 553, 554, 555, 845, 891, 892, 895, 955, 957, 994, 1066, 1067, 1078, 1108, 1115, 1137, 1139, 1140, 1141, 1161, 1247], "necessari": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 329, 754, 994, 1066, 1102, 1115, 1246, 1247], "set_reference_set": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92], "show": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 133, 135, 139, 145, 462, 795, 1036, 1066, 1247, 1250], "table_param": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92], "consol": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 139, 517, 1036, 1040, 1245], "basic": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 139, 152, 918, 928, 1245], "datasheet": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 139, 392, 393, 394, 911, 1067, 1202], "subset_intersect": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92], "univers": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92], "occur": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 145], "to_arrai": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92], "use_field": [3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92], "v": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 145, 306, 997, 1247], "featur": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 406, 411, 985, 986, 987, 988, 1139, 1140, 1172, 1177, 1187, 1199, 1245, 1247], "arrai": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 190, 443, 448, 453, 1008, 1247], "huge": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 139, 791, 965, 1067, 1112, 1247, 1248], "to_bool_arrai": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92], "to_set": [3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 955], "dump": [5, 100, 791, 792, 794, 795, 890, 994, 1029, 1066, 1247], "primary_field": 5, "check_id": 5, "abstractresourc": [5, 100, 1008], "protein_sourc": [6, 1247], "complex_sourc": [6, 1247], "keep_annot": [6, 93, 94], "create_datafram": [6, 93, 94], "pickle_fil": [6, 30, 105, 126, 145, 1058, 1062, 1063, 1247], "logger": [6, 30, 122, 126, 127, 145, 994, 1008, 1021, 1036, 1037, 1058, 1059, 1060, 1066, 1067, 1068, 1094, 1099, 1108, 1115, 1124, 1129, 1225], "manag": [6, 1071, 1102, 1103, 1245], "accept": [6, 145, 270, 505, 1058, 1068, 1229, 1241, 1244, 1247, 1250], "convert": [6, 30, 145, 234, 268, 306, 588, 589, 590, 594, 595, 895, 909, 915, 918, 928, 1060, 1067, 1078, 1080, 1108, 1112, 1137, 1226, 1246, 1247], "protein_sources_default": 6, "complex_sources_default": 6, "onli": [6, 30, 122, 127, 132, 133, 135, 139, 145, 179, 182, 184, 185, 211, 214, 225, 226, 227, 228, 229, 230, 231, 232, 233, 234, 249, 288, 294, 302, 345, 346, 347, 348, 350, 352, 353, 358, 360, 366, 419, 424, 441, 442, 443, 446, 447, 448, 451, 452, 453, 469, 524, 527, 532, 648, 650, 734, 775, 782, 873, 909, 915, 918, 928, 958, 960, 967, 971, 997, 1008, 1015, 1018, 1019, 1036, 1037, 1045, 1050, 1060, 1066, 1067, 1068, 1078, 1079, 1080, 1087, 1089, 1091, 1094, 1096, 1100, 1101, 1104, 1105, 1112, 1124, 1126, 1144, 1153, 1245, 1246, 1249, 1250], "construct": [6, 909, 1036, 1066, 1229, 1233, 1234, 1235, 1236, 1237, 1238, 1241, 1243, 1244], "default_field": 6, "bool": [6, 30, 127, 128, 133, 135, 139, 145, 157, 168, 169, 170, 184, 185, 188, 190, 191, 211, 212, 213, 214, 222, 241, 249, 260, 261, 306, 312, 314, 315, 331, 332, 333, 334, 335, 336, 337, 346, 347, 348, 350, 352, 353, 358, 360, 363, 366, 384, 389, 390, 408, 424, 441, 446, 451, 469, 472, 517, 527, 532, 555, 564, 649, 665, 666, 668, 671, 672, 673, 674, 675, 714, 718, 723, 727, 734, 759, 782, 793, 794, 818, 819, 820, 821, 836, 845, 854, 857, 894, 913, 918, 930, 955, 958, 971, 972, 1008, 1058, 1060, 1066, 1067, 1078, 1080, 1087, 1089, 1091, 1094, 1096, 1097, 1098, 1100, 1101, 1104, 1105, 1112, 1115, 1144, 1146, 1153], "whether": [6, 132, 135, 145, 157, 249, 424, 517, 782, 894, 958, 1115, 1247], "apart": [6, 145, 294, 668, 669, 1246, 1247], "upon": [6, 30, 139, 1040, 1066, 1247], "initi": [6, 36, 93, 94, 119, 120, 145, 1008, 1053, 1062, 1063, 1066, 1103, 1115, 1126, 1153, 1247, 1249], "chanc": [6, 1247], "later": [6, 30, 126, 133, 135, 139, 876, 1066, 1115, 1247], "all_annot": [6, 30, 1247], "all_annotations_str": 6, "serial": [6, 96, 122, 132, 133, 135], "search": [6, 30, 139, 145, 909, 915, 918, 928, 1066, 1112, 1161], "dictionari": [6, 30, 96, 122, 132, 133, 135, 139, 145, 188, 190, 194, 197, 220, 243, 251, 267, 294, 355, 479, 532, 534, 538, 648, 671, 672, 673, 674, 675, 707, 709, 713, 716, 793, 794, 876, 895, 905, 930, 955, 1025, 1066, 1067, 1068, 1078, 1087, 1089, 1091, 1094, 1096, 1101, 1245, 1246], "approv": 10, "cancer": [10, 204, 205, 207, 285, 288, 536, 767, 768, 1247], "drug": [10, 32, 122, 145, 165, 166, 168, 169, 170, 203, 204, 205, 252, 255, 312, 313, 314, 315, 316, 325, 355, 356, 357, 358, 360, 362, 363, 364, 494, 560, 563, 564, 565, 566, 568, 570, 574, 663, 671, 833, 834, 835, 836, 901, 1067, 1161, 1247, 1249], "http": [10, 38, 170, 191, 204, 205, 225, 226, 227, 228, 229, 230, 231, 232, 233, 243, 245, 275, 280, 281, 366, 384, 496, 497, 498, 505, 517, 579, 627, 637, 648, 649, 650, 656, 657, 665, 666, 682, 683, 714, 723, 774, 845, 878, 879, 898, 904, 909, 915, 918, 928, 944, 1036, 1066, 1067, 1112, 1161, 1226, 1246, 1250], "www": [10, 170, 191, 204, 205, 225, 226, 227, 228, 229, 230, 231, 232, 233, 275, 384, 579, 627, 637, 714, 774, 904, 909, 915, 918, 928, 944, 1066, 1067, 1112, 1161, 1226, 1247], "anticancerfund": [10, 204, 205], "org": [10, 38, 170, 191, 204, 205, 225, 226, 227, 228, 229, 230, 231, 232, 233, 275, 421, 498, 579, 627, 648, 649, 650, 656, 657, 665, 666, 714, 774, 909, 915, 918, 928, 944, 972, 1066, 1067, 1112, 1226, 1247, 1250], "en": [10, 204, 205, 366, 1247], "cancerdrug": [10, 204, 205], "db": [10, 94, 120, 204, 205, 384, 955, 1063, 1246, 1247], "cellphonedb": [13, 1011, 1245], "abbrevi": [14, 15, 43, 668, 1115], "cspa": [14, 15], "cell": [23, 58, 64, 69, 181, 182, 247, 432, 433, 682, 683, 950, 958, 1058, 1247, 1250], "type": [23, 58, 69, 121, 122, 127, 128, 135, 136, 145, 181, 182, 189, 190, 205, 224, 225, 226, 231, 247, 302, 356, 359, 364, 386, 387, 441, 446, 451, 468, 517, 534, 648, 665, 666, 682, 683, 697, 713, 751, 775, 778, 790, 791, 793, 803, 834, 904, 905, 906, 909, 913, 958, 960, 963, 967, 968, 970, 971, 972, 977, 978, 1008, 1036, 1037, 1060, 1066, 1067, 1068, 1072, 1075, 1078, 1079, 1080, 1081, 1086, 1087, 1089, 1091, 1093, 1094, 1096, 1098, 1100, 1101, 1104, 1105, 1161, 1245, 1246, 1247], "marker": [23, 58, 69, 247, 682, 683], "annot_attr": 26, "corum": [27, 28, 1247, 1250], "class_definit": [30, 139, 955, 957], "exclud": [30, 126, 139, 145, 179, 182, 184, 185, 213, 291, 292, 648, 650, 856, 955, 1247], "excludes_extra": [30, 139], "annotdb_pickle_fil": 30, "composite_resource_nam": [30, 139], "seri": [30, 135, 139, 306, 1067, 1077, 1169, 1247], "definit": [30, 139, 145, 456, 479, 893, 957, 958, 1008, 1025, 1066, 1067, 1245, 1246, 1249], "instanc": [30, 93, 100, 101, 102, 103, 104, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 119, 122, 126, 127, 128, 133, 135, 139, 145, 406, 411, 891, 974, 979, 1008, 1019, 1021, 1036, 1037, 1051, 1053, 1062, 1066, 1067, 1071, 1076, 1078, 1087, 1089, 1091, 1094, 1096, 1098, 1102, 1103, 1108, 1124, 1129, 1134, 1225, 1229, 1246, 1247, 1250], "intern": [30, 133, 139, 227, 234, 588, 708, 759, 876, 1011, 1012, 1013, 1014, 1015, 1016, 1017, 1018, 1066, 1067, 1078, 1080, 1247, 1249], "annot_format": [30, 139], "annotdef": [30, 139], "These": [30, 139, 442, 443, 447, 448, 452, 453, 525, 654, 708, 909, 915, 918, 928, 945, 960, 967, 971, 972, 1013, 1015, 1016, 1029, 1067, 1080, 1115, 1124, 1247, 1250], "carri": [30, 96, 139, 708, 1247], "instruct": [30, 139, 509, 1247], "popul": [30, 133, 139, 958, 1247], "parent": [30, 139, 164, 171, 479, 778, 955, 956, 958, 1060, 1116, 1117, 1118, 1120, 1123, 1125, 1126, 1247], "respect": [30, 135, 139, 145, 400, 401, 402, 406, 407, 408, 410, 411, 412, 414, 415, 416, 417, 1247], "while": [30, 135, 139, 145, 229, 232, 260, 340, 443, 448, 453, 479, 650, 718, 754, 759, 791, 794, 1008, 1036, 1053, 1246, 1247], "p00533": [30, 139, 143, 145, 1246, 1247, 1250], "egfr": [30, 135, 139, 145, 1115, 1246, 1247, 1250], "under": [30, 96, 139, 984, 1071, 1076, 1247], "adhes": [30, 64, 139, 143], "direct": [30, 128, 135, 136, 139, 145, 270, 584, 673, 718, 744, 958, 965, 1013, 1016, 1058, 1060, 1067, 1233, 1234, 1235, 1236, 1237, 1238, 1245], "children": [30, 139], "ad": [30, 139, 145, 1115, 1124, 1246, 1247], "built": [30, 139, 145, 909, 915, 918, 928, 972, 1008, 1058, 1059, 1081, 1245, 1246], "extra": [30, 133, 139, 145, 668, 1067], "merg": [30, 96, 122, 126, 127, 132, 135, 139, 145, 974, 1115, 1124, 1247], "want": [30, 127, 135, 139, 145, 1046, 1051, 1245, 1246, 1250], "overwrit": [30, 135, 139, 1008], "modifi": [30, 135, 139, 1008, 1043], "your": [30, 139, 442, 447, 452, 1112, 1247, 1250], "execut": [30, 139, 1115, 1247], "instanti": [30, 139, 958, 1019, 1247], "empti": [30, 133, 135, 139, 145, 346, 352, 474, 759, 909, 997, 1067, 1246, 1247], "class_to_class_connect": [30, 139], "filter_interclass_network": [30, 139], "classes_by_ent": [30, 139], "One": [30, 122, 135, 139, 145, 179, 182, 190, 191, 302, 303, 384, 781, 794, 895, 918, 928, 1067, 1087, 1089, 1091, 1094, 1096, 1104, 1105, 1108, 1161, 1172, 1247], "instead": [30, 135, 139, 145, 331, 441, 446, 451, 555, 665, 666, 714, 793, 794, 1030, 1040, 1247, 1248, 1250], "iter_class": [30, 139], "counts_by_class": [30, 139], "create_class": [30, 139], "classdef": [30, 139], "overrid": [30, 139, 960, 967, 971, 972, 1087, 1089, 1091, 1096], "degree_inter_class_network": [30, 139], "annot_args_sourc": [30, 139], "annot_args_target": [30, 139], "degrees_of": [30, 139], "target": [30, 128, 135, 139, 145, 155, 187, 204, 255, 260, 261, 270, 306, 344, 345, 346, 347, 348, 350, 352, 353, 355, 363, 468, 469, 627, 637, 639, 641, 666, 671, 672, 673, 674, 675, 679, 680, 751, 754, 778, 947, 965, 981, 1017, 1060, 1066, 1067, 1068, 1078, 1087, 1089, 1091, 1094, 1095, 1096, 1098, 1100, 1101, 1104, 1105, 1161, 1233, 1234, 1235, 1236, 1237, 1238, 1247, 1249, 1250], "degre": [30, 135, 139], "filter_class": [30, 139], "annot_df": [30, 139], "combined_df": [30, 139], "network_arg": [30, 139], "annot_arg": [30, 139], "entities_sourc": [30, 139], "entities_target": [30, 139], "only_direct": [30, 98, 139, 145], "only_undirect": [30, 98, 139], "only_sign": [30, 98, 135, 139], "only_effect": [30, 139], "only_protein": [30, 98, 139, 527], "swap_undirect": [30, 98, 139], "undirected_orient": [30, 139], "entities_or": [30, 98, 139], "where": [30, 135, 139, 145, 204, 400, 401, 402, 410, 411, 412, 414, 415, 416, 417, 534, 553, 611, 650, 754, 879, 978, 999, 1036, 1087, 1089, 1091, 1094, 1096, 1105, 1115, 1233, 1234, 1235, 1236, 1237, 1238, 1247, 1250], "between": [30, 139, 145, 171, 222, 239, 270, 441, 446, 451, 570, 571, 572, 656, 665, 666, 707, 709, 716, 717, 719, 754, 759, 793, 854, 857, 912, 974, 1066, 1067, 1078, 1079, 1089, 1096, 1229, 1234, 1236, 1237, 1246, 1247, 1249, 1250], "enit": [30, 139], "alreadi": [30, 135, 139, 145, 443, 448, 453, 791, 895, 1008, 1018, 1060, 1066, 1124, 1247], "side": [30, 139, 663, 834, 835, 836, 1066, 1247], "connect": [30, 135, 139, 794, 1124, 1229, 1246, 1249, 1250], "note": [30, 135, 139, 190, 347, 348, 353, 441, 446, 451, 611, 721, 722, 724, 725, 726, 728, 1008, 1067, 1247, 1250], "howev": [30, 135, 139, 649, 1246, 1247], "result": [30, 127, 135, 139, 145, 191, 241, 267, 363, 366, 406, 407, 410, 412, 441, 443, 446, 448, 451, 453, 532, 718, 751, 895, 909, 958, 1040, 1046, 1047, 1048, 1051, 1060, 1066, 1067, 1079, 1098, 1112, 1115, 1161, 1247], "consequ": [30, 139], "memori": [30, 139, 443, 448, 453, 527, 794, 815, 1067, 1068, 1108, 1115, 1137, 1139, 1140, 1246, 1247, 1249], "issu": [30, 139, 1046, 1051, 1246], "criteria": [30, 133, 135, 145, 815, 1067, 1087, 1089, 1091, 1096], "defin": [30, 36, 121, 127, 128, 134, 135, 139, 145, 442, 447, 452, 707, 717, 854, 857, 858, 955, 958, 972, 974, 1008, 1067, 1068, 1233, 1234, 1235, 1236, 1237, 1238, 1241, 1243, 1244, 1245, 1246, 1250], "here": [30, 96, 122, 132, 134, 135, 139, 145, 213, 260, 306, 366, 505, 707, 723, 1053, 1066, 1067, 1112, 1124, 1229, 1246, 1247, 1250], "appli": [30, 443, 448, 453, 815, 909, 1008, 1047, 1247], "undirect": [30, 135, 139, 1015, 1233, 1234, 1235, 1236, 1237, 1238, 1247], "specif": [30, 122, 128, 135, 139, 145, 197, 244, 265, 366, 561, 565, 567, 568, 569, 571, 572, 575, 592, 955, 958, 1066, 1087, 1089, 1091, 1096, 1149, 1246, 1247, 1250], "without": [30, 96, 97, 122, 132, 135, 139, 145, 249, 835, 955, 1008, 1011, 1036, 1245, 1250], "effect": [30, 98, 135, 136, 139, 145, 344, 427, 428, 585, 663, 800, 834, 835, 836, 947, 981, 1087, 1089, 1091, 1096, 1247], "1": [30, 123, 127, 135, 136, 137, 139, 145, 147, 163, 164, 165, 166, 167, 178, 184, 185, 224, 236, 344, 427, 428, 432, 433, 471, 511, 529, 540, 604, 665, 666, 685, 688, 689, 757, 829, 830, 831, 832, 851, 908, 910, 955, 956, 957, 963, 965, 967, 968, 970, 975, 978, 979, 980, 982, 996, 999, 1053, 1067, 1069, 1078, 1080, 1086, 1090, 1091, 1094, 1095, 1098, 1100, 1101, 1104, 1105, 1107, 1109, 1112, 1141, 1161, 1225, 1245, 1247, 1250], "partner": [30, 135, 139, 145, 471, 553, 1247, 1250], "small": [30, 122, 139, 232, 233, 384, 781, 791, 825, 1115, 1225, 1233, 1234, 1235, 1236, 1237, 1238, 1246, 1249], "molecul": [30, 64, 122, 135, 139, 145, 232, 233, 254, 356, 386, 387, 825, 1115, 1246, 1250], "mutual": [30, 135, 564], "ignor": [30, 132, 133, 135, 139, 145, 294, 999, 1008, 1067, 1079, 1094, 1100], "make": [30, 122, 126, 139, 145, 1008, 1021, 1036, 1037, 1044, 1050, 1051, 1067, 1078, 1080, 1094, 1108, 1124, 1129, 1225, 1247, 1250], "sure": [30, 139], "orient": [30, 139], "partenr": [30, 139], "get_class": [30, 139], "its": [30, 121, 135, 139, 145, 228, 294, 357, 395, 407, 498, 717, 759, 909, 915, 918, 928, 945, 1029, 1032, 1043, 1044, 1058, 1060, 1061, 1064, 1067, 1071, 1078, 1080, 1115, 1153, 1159, 1241, 1243, 1244, 1247, 1249], "content": [30, 96, 122, 132, 135, 139, 275, 382, 545, 649, 774, 794, 845, 913, 958, 1008, 1036, 1115, 1246, 1248, 1249], "annotop": [30, 139], "oper": [30, 131, 139, 909, 915, 918, 928, 957, 958, 1058, 1247], "over": [30, 128, 139, 440, 445, 450, 909, 921, 1126, 1139, 1140, 1249], "get_df": [30, 139, 1094, 1247], "doe": [30, 93, 119, 135, 139, 145, 329, 474, 517, 890, 945, 974, 997, 1029, 1040, 1045, 1050, 1060, 1062, 1067, 1068, 1071, 1078, 1102, 1115, 1246, 1247], "yet": [30, 93, 119, 126, 139, 145, 564, 1062, 1067, 1102, 1247, 1250], "get_interclass_network_df": [30, 139], "interclass": [30, 139], "otherwis": [30, 122, 132, 133, 135, 139, 145, 407, 532, 534, 668, 707, 913, 955, 997, 1067, 1247], "network_df": [30, 139], "get_par": [30, 139], "As": [30, 139, 346, 352, 1042, 1043, 1124, 1247, 1250], "uniqu": [30, 126, 135, 139, 145, 147, 977, 1030, 1115, 1247, 1250], "determin": [30, 135, 139, 1067], "get_resourc": [30, 135, 139, 145], "For": [30, 36, 127, 128, 135, 139, 145, 181, 188, 190, 267, 302, 346, 347, 348, 350, 352, 353, 648, 649, 650, 669, 780, 905, 906, 909, 915, 918, 928, 940, 941, 958, 972, 984, 992, 1008, 1029, 1058, 1059, 1060, 1067, 1073, 1074, 1077, 1087, 1089, 1091, 1096, 1108, 1112, 1115, 1124, 1149, 1152, 1153, 1159, 1161, 1246, 1247, 1250], "belong": [30, 135, 139, 145, 974, 1060, 1102, 1247], "composit": [30, 139, 958, 1008, 1247, 1250], "first": [30, 123, 135, 136, 137, 139, 145, 147, 163, 164, 165, 166, 167, 178, 224, 236, 294, 344, 355, 389, 427, 428, 441, 442, 443, 446, 447, 448, 451, 452, 453, 471, 511, 540, 550, 604, 665, 666, 685, 688, 689, 707, 716, 717, 719, 757, 759, 793, 829, 830, 831, 832, 908, 910, 955, 956, 957, 971, 996, 999, 1019, 1066, 1067, 1069, 1078, 1080, 1086, 1088, 1090, 1095, 1107, 1109, 1112, 1115, 1144, 1163, 1205, 1246, 1247, 1249], "alphabet": [30, 135, 139, 1124, 1247], "order": [30, 126, 135, 139, 145, 1093, 1115, 1124, 1139, 1140, 1247, 1250], "given": [30, 133, 135, 139, 145, 462, 509, 524, 671, 672, 673, 674, 675, 718, 754, 978, 997, 1031, 1058, 1067, 1079, 1112, 1129, 1134, 1139, 1140, 1229, 1233, 1234, 1235, 1236, 1237, 1238, 1241, 1243, 1244, 1247], "full_nam": [30, 984, 1247], "populate_class": [30, 139], "updat": [30, 96, 122, 132, 135, 139, 145, 329, 406, 411, 997, 1008, 1053, 1247, 1249, 1250], "classif": [30, 38, 139, 389, 427, 428, 511], "populate_scor": [30, 139], "consensu": [30, 135, 139, 1247], "process_annot": [30, 139], "quality_check_t": [30, 139], "path": [30, 139, 145, 209, 294, 359, 463, 827, 890, 1008, 1029, 1030, 1032, 1036, 1066, 1115, 1246, 1247], "fmt": [30, 139], "tsv": [30, 139], "only_swissprot": [30, 139, 469, 1087, 1089, 1091, 1094, 1095, 1096, 1097, 1098, 1100, 1101, 1104, 1105], "top": [30, 139, 429, 443, 448, 453, 671, 672, 673, 674, 675, 879, 909, 918, 928, 1003, 1247], "export": [30, 139, 755, 1066, 1177, 1199, 1245, 1246, 1249], "format": [30, 128, 139, 145, 158, 179, 194, 221, 260, 306, 463, 649, 746, 749, 782, 813, 814, 816, 933, 1053, 1067, 1149, 1177, 1199, 1226, 1249, 1250], "qualiti": [30, 139, 1250], "check": [30, 135, 139, 191, 498, 933, 984, 985, 986, 987, 988, 1067, 1087, 1091, 1129, 1177, 1199, 1246, 1247, 1250], "purpos": [30, 139, 441, 446, 451, 984, 1008, 1247], "row": [30, 139, 181, 182, 306, 443, 448, 453, 835, 977, 1087, 1089, 1091, 1094, 1096, 1105, 1247, 1250], "file": [30, 139, 145, 150, 157, 192, 193, 197, 201, 209, 244, 265, 266, 267, 268, 294, 302, 303, 347, 348, 353, 355, 359, 407, 442, 460, 463, 465, 467, 472, 587, 596, 714, 718, 746, 748, 749, 750, 755, 778, 812, 813, 816, 827, 840, 890, 945, 1008, 1029, 1036, 1037, 1039, 1040, 1066, 1067, 1070, 1112, 1115, 1124, 1143, 1245, 1246, 1249], "latex": [30, 139, 1177, 1199], "register_network": [30, 139, 1247], "dataset": [30, 133, 135, 139, 145, 179, 180, 181, 182, 191, 204, 212, 213, 221, 244, 275, 331, 332, 333, 334, 335, 336, 337, 440, 441, 442, 443, 465, 501, 502, 671, 672, 673, 674, 675, 752, 753, 835, 836, 845, 945, 965, 997, 998, 1000, 1008, 1012, 1018, 1024, 1245, 1246], "afterward": [30, 139], "discard": [30, 139, 145, 894, 1067], "futur": [30, 139, 758, 759, 974, 1247, 1250], "address": [30, 139, 355, 356, 357, 358, 359, 360, 648, 649, 650, 1112, 1247], "regist": [30, 139, 355, 356, 357, 358, 359, 360, 505, 648, 649, 650, 1030, 1093, 1112], "resources_in_categori": [30, 139], "contribut": [30, 139, 1246], "set_interclass_network_df": [30, 139], "whole": [30, 139, 1008, 1247], "inter": [30, 139, 1245, 1246], "keep": [30, 122, 128, 139, 184, 185, 527, 668, 718, 775, 782, 1067, 1068, 1112, 1163, 1194, 1246, 1247], "subsequ": [30, 127, 139, 1246, 1247], "faster": [30, 139, 1066, 1246, 1247], "update_par": [30, 139], "cytokin": [31, 91, 305, 306], "perturb": [31, 91, 305], "signatur": [31, 51, 72, 91, 305, 306, 764, 765], "druggabl": [32, 324, 326], "go_annot": [36, 37, 1059], "gocustomannot": 36, "go": [36, 531, 534, 1046, 1246, 1247, 1249], "intercell_annot": [36, 139, 958, 1247], "intercell_categori": 36, "get_annot": [36, 1058, 1059], "correspond": [36, 135, 145, 188, 357, 780, 875, 877, 909, 918, 928, 985, 986, 987, 988, 997, 1059, 1067, 1073, 1087, 1089, 1091, 1096, 1108, 1137, 1247], "ontologi": [36, 37, 168, 171, 411, 477, 478, 479, 480, 648, 650, 761, 819, 967, 1058, 1059, 1060, 1061, 1064, 1070, 1245, 1246, 1249], "term": [36, 168, 171, 398, 400, 401, 402, 406, 407, 408, 410, 411, 412, 414, 415, 416, 417, 478, 479, 480, 498, 505, 531, 534, 669, 1058, 1059, 1060, 1247], "express": [36, 86, 88, 179, 180, 181, 182, 305, 346, 347, 348, 350, 352, 353, 672, 722, 727, 856, 958, 1058, 1059, 1112, 1246, 1247, 1250], "process_categori": [36, 1059], "ac": [36, 275, 717, 719, 878, 879, 904, 1059, 1067, 1078, 1161, 1172, 1246, 1247], "role": [37, 139, 143, 225, 226, 228, 231, 243, 604, 958, 1245, 1246], "intercellular": [37, 139, 143, 958, 1245, 1246, 1249], "commun": [37, 139, 143, 958, 1008, 1245, 1246, 1249], "gpcr": 38, "load_sourc": [39, 57, 73], "ligandreceptor": [39, 57, 73], "hpmr": [43, 1011, 1247], "famili": [47, 85, 472, 511, 553, 554, 555, 845, 1124, 1247], "pathwai": [54, 55, 67, 72, 78, 79, 145, 212, 213, 270, 288, 303, 441, 446, 451, 550, 552, 562, 566, 569, 573, 574, 575, 657, 764, 765, 814, 819, 820, 847, 1008, 1011, 1016, 1039, 1040, 1041, 1042, 1043, 1044, 1045, 1046, 1047, 1048, 1050, 1051, 1246, 1247, 1250], "kegg": [54, 55, 165, 170, 212, 213, 270, 346, 352, 560, 561, 562, 563, 564, 565, 566, 567, 568, 569, 570, 571, 572, 573, 574, 575, 1018, 1247], "via": [55, 132, 133, 135, 145, 995, 996, 998, 999], "pathwaycommon": [55, 1008, 1247, 1249], "kinas": [56, 483, 577, 589, 734, 909, 915, 918, 928, 1247, 1250], "com": [56, 577, 637, 639, 898, 1036, 1112, 1246, 1247], "panglaodb": [58, 1247], "ligand_col": 59, "receptor_col": 59, "ligand_id_typ": 59, "receptor_id_typ": 59, "record_processor_method": 59, "record_extra_field": 59, "record_default": 59, "extra_fields_method": 59, "literatur": [60, 131, 132, 135, 145, 346, 347, 348, 350, 352, 353, 501, 502, 503, 602, 627, 637, 639, 654, 656, 657, 679, 748, 1008, 1011, 1015, 1016, 1245, 1250], "extern": [60, 355, 534, 602, 1247], "predict": [60, 272, 344, 346, 347, 348, 350, 352, 353, 517, 602, 861, 893, 894], "cam": 64, "10": [64, 147, 275, 344, 375, 376, 377, 378, 384, 448, 453, 529, 553, 554, 555, 579, 774, 781, 944, 950, 952, 955, 1067, 1094, 1112, 1129, 1225, 1245, 1247, 1250], "4137": 64, "cin": 64, "s341": 64, "netpath": [67, 1013, 1247], "phosphatas": [71, 732, 1247], "chen": [71, 732], "et": [71, 83, 375, 376, 377, 378, 529, 579, 732, 774, 944, 950, 958, 1112, 1247], "al": [71, 83, 375, 376, 377, 378, 529, 579, 732, 774, 944, 950, 958, 1112, 1247], "scienc": [71, 732, 1246], "signal": [71, 139, 199, 663, 732, 901, 958, 1245, 1250], "2017": [71, 502, 732], "s1": [71, 732, 1247], "respons": [72, 669, 723, 764, 765, 909, 1246, 1247], "transcriptom": [72, 764, 765], "saezlab": [72, 346, 347, 348, 350, 352, 353, 764, 765, 1246], "signalink": [77, 78, 1247, 1250], "signor": [79, 1011, 1018, 1039, 1040, 1041, 1042, 1043, 1044, 1045, 1046, 1047, 1048, 1050, 1051, 1247, 1250], "topolog": [82, 89], "domain": [82, 89, 127, 340, 517, 524, 594, 595, 596, 717, 863, 877, 878, 895, 945, 973, 977, 1098, 1139, 1140, 1247, 1250], "transmembran": [82, 89, 236, 1247, 1250], "segment": [82, 89, 1112, 1247], "transcript": [83, 135, 145, 155, 181, 182, 188, 190, 191, 555, 873, 961, 1008, 1014, 1018, 1067, 1078, 1080, 1246, 1250], "factor": [83, 145, 873, 1247, 1250], "tf": [83, 155, 212, 213, 260, 261, 344, 345, 346, 347, 348, 350, 352, 353, 679, 680, 873, 888, 1247, 1249, 1250], "censu": [83, 285, 873], "vaqueriza": [83, 873], "2009": [83, 873, 1247], "tissu": [86, 88, 181, 182, 1112, 1247, 1250], "subcellular": [87, 788], "exocarta": 90, "cytosig": [91, 1247], "dedic": [96, 1247], "json": [96, 122, 132, 133, 135, 265, 266, 366, 723, 913, 1008, 1112, 1247], "full": [96, 122, 126, 132, 135, 188, 275, 331, 333, 335, 337, 355, 442, 447, 452, 668, 669, 845, 905, 944, 1112, 1236, 1237, 1245, 1246, 1249], "whitespac": [96, 122, 132, 135], "line": [96, 122, 132, 135, 181, 182, 267, 346, 347, 348, 350, 352, 353, 909, 1233, 1234, 1235, 1236, 1237, 1238, 1247], "break": [96, 122, 132, 135, 517], "update_attr": [96, 122, 132, 135], "store": [96, 122, 132, 135, 974, 978, 1008, 1019, 1098, 1099, 1103, 1108, 1112, 1115, 1137, 1161, 1246, 1247, 1249], "ident": [96, 122, 132, 135, 407, 945, 1008, 1247], "share": [96, 122, 132, 135, 145, 147, 958, 984, 1008, 1247, 1249], "common": [96, 122, 132, 135, 194, 1146, 1149, 1169, 1245], "combine_attr": [96, 122, 132, 135], "new": [96, 122, 128, 132, 135, 145, 263, 794, 1008, 1018, 1067, 1076, 1124, 1246, 1247, 1249, 1250], "three": [96, 122, 132, 135, 709, 1229], "wai": [96, 122, 132, 133, 135, 145, 294, 411, 413, 443, 448, 453, 717, 718, 719, 794, 905, 909, 915, 918, 928, 960, 967, 971, 1066, 1115, 1124, 1247], "keyword": [96, 122, 132, 135, 1163, 1194, 1229, 1247], "work": [97, 329, 366, 441, 446, 451, 754, 791, 1008, 1067, 1078, 1138, 1246, 1247, 1250], "import": [97, 145, 406, 407, 411, 448, 453, 845, 1018, 1039, 1040, 1041, 1042, 1043, 1044, 1045, 1046, 1047, 1048, 1050, 1051, 1187, 1246, 1247], "main": [97, 126, 132, 135, 145, 193, 1224, 1246, 1247, 1250], "data_model": [98, 135, 145, 965, 998, 999, 1008], "interaction_typ": [98, 132, 133, 135, 145, 688, 965, 998, 999, 1008, 1247], "source_ent": 98, "target_ent": 98, "remove_loop": [98, 145], "intera": [100, 101, 102, 103, 104, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 127, 227, 234, 588, 594, 708, 759, 876, 1098, 1247], "abstractcomplexresourc": [101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117], "mani": [118, 479, 553, 554, 555, 1008, 1036, 1067, 1078, 1080, 1246, 1247, 1249, 1250], "just": [118, 145, 960, 967, 971, 1025, 1119, 1122, 1127, 1245], "like": [118, 135, 145, 265, 267, 442, 447, 452, 721, 722, 724, 725, 726, 727, 728, 958, 972, 997, 1025, 1117, 1119, 1122, 1127, 1246, 1247], "uniprot_db": [118, 395], "all_uniprot": [118, 395, 1058, 1247], "taxon": [121, 122, 123, 127, 135, 145, 382, 751, 930, 1067, 1087, 1089, 1091, 1094, 1096, 1098, 1104, 1149, 1247], "id_typ": [122, 123, 135, 359, 364, 468, 516, 517, 649, 650, 665, 666, 969, 972, 975, 978, 979, 980, 982, 1066, 1067, 1068, 1069, 1077, 1078, 1079, 1080, 1082, 1083, 1087, 1089, 1091, 1094, 1095, 1096, 1100, 1101, 1104, 1105, 1119, 1122, 1127, 1129, 1130, 1132, 1134, 1135, 1161, 1247], "attributehandl": [122, 132, 135, 1118, 1119, 1120, 1125, 1126], "lncrna": [122, 145, 1067], "non": [122, 128, 145, 302, 654, 1008, 1060, 1067, 1078, 1080, 1247], "metabolit": [122, 145, 440, 441, 442, 443, 452, 462, 463, 465, 1247, 1249], "compound": [122, 145, 551, 592, 790, 791, 1161, 1247, 1249], "nonetyp": [122, 132, 135, 145, 648, 649, 650, 775, 1008], "addit": [122, 127, 145, 329, 349, 351, 517, 668, 669, 909, 915, 918, 928, 1008, 1036, 1058, 1066, 1098, 1247, 1250], "prepend": [122, 145, 1008, 1021, 1036, 1037, 1094, 1108, 1124, 1129, 1225], "messag": [122, 145, 1008, 1021, 1036, 1037, 1040, 1043, 1044, 1094, 1108, 1115, 1124, 1129, 1225, 1245, 1250], "send": [122, 145, 517, 1008, 1021, 1036, 1037, 1094, 1108, 1124, 1129, 1225, 1226], "classmethod": [122, 145, 958, 985, 986, 987, 988, 1036, 1067], "count_entity_typ": 122, "filter_entity_typ": [122, 958], "ones": [122, 135, 145, 668, 669, 707, 1060, 1108, 1137, 1247], "occurr": [123, 136, 137, 147, 163, 164, 165, 166, 167, 178, 224, 236, 277, 344, 427, 428, 471, 511, 540, 550, 604, 685, 688, 689, 757, 829, 830, 831, 832, 908, 910, 955, 956, 957, 996, 999, 1069, 1086, 1088, 1090, 1095, 1107, 1109], "alia": [123, 136, 137, 147, 163, 164, 165, 166, 167, 178, 224, 236, 344, 427, 428, 471, 511, 540, 550, 604, 685, 688, 689, 757, 829, 830, 831, 832, 908, 910, 955, 956, 957, 996, 999, 1069, 1086, 1088, 1090, 1095, 1107, 1109, 1228, 1230, 1231], "2": [123, 136, 145, 147, 165, 166, 167, 178, 224, 236, 267, 344, 398, 427, 428, 471, 511, 540, 553, 604, 611, 685, 688, 689, 713, 757, 787, 830, 831, 832, 850, 851, 908, 910, 955, 956, 996, 997, 999, 1069, 1086, 1090, 1095, 1107, 1109, 1112, 1229, 1241, 1244, 1245], "index": [123, 136, 137, 147, 163, 164, 165, 166, 167, 170, 178, 224, 236, 243, 245, 306, 344, 427, 428, 471, 511, 540, 550, 604, 641, 682, 683, 685, 688, 689, 757, 829, 830, 831, 832, 908, 910, 955, 956, 957, 996, 999, 1069, 1086, 1088, 1090, 1095, 1107, 1109, 1247], "stop": [123, 136, 137, 147, 163, 164, 165, 166, 167, 178, 224, 236, 344, 427, 428, 471, 511, 540, 550, 604, 685, 688, 689, 757, 829, 830, 831, 832, 908, 910, 955, 956, 957, 996, 999, 1039, 1043, 1069, 1086, 1088, 1090, 1095, 1107, 1109, 1247], "9223372036854775807": [123, 136, 137, 147, 163, 164, 165, 166, 167, 178, 224, 236, 344, 427, 428, 471, 511, 540, 550, 604, 685, 688, 689, 757, 829, 830, 831, 832, 908, 910, 955, 956, 957, 996, 999, 1069, 1086, 1088, 1090, 1095, 1107, 1109], "rais": [123, 136, 137, 147, 163, 164, 165, 166, 167, 178, 224, 236, 294, 344, 427, 428, 471, 511, 540, 550, 604, 685, 688, 689, 757, 829, 830, 831, 832, 908, 909, 910, 955, 956, 957, 996, 997, 999, 1069, 1086, 1088, 1090, 1095, 1107, 1109], "valueerror": [123, 136, 137, 147, 163, 164, 165, 166, 167, 178, 224, 236, 344, 427, 428, 471, 511, 540, 550, 604, 685, 688, 689, 757, 829, 830, 831, 832, 908, 910, 955, 956, 957, 996, 999, 1069, 1086, 1088, 1090, 1095, 1107, 1109], "3": [123, 136, 145, 147, 165, 166, 167, 224, 236, 267, 342, 344, 389, 421, 427, 428, 471, 511, 540, 553, 604, 685, 688, 757, 832, 908, 909, 910, 915, 918, 928, 955, 999, 1095, 1107, 1109, 1224, 1245, 1246, 1247], "input_param": [126, 127, 128], "map_by_orthology_from": [126, 127], "trace": [126, 127, 128, 1115], "orthology_only_swissprot": [126, 127], "ptm_orthology_strict": [126, 127], "nonhuman_direct_lookup": [126, 128], "inputarg": [126, 127, 128], "doc": [126, 135, 145, 1177, 1199, 1245, 1249], "written": [126, 1112, 1247], "assign_to_network": 126, "pa": [126, 145, 1018, 1039, 1040, 1041, 1042, 1043, 1044, 1045, 1046, 1047, 1048, 1050, 1051, 1247], "enzym": [126, 127, 128, 132, 133, 308, 309, 389, 390, 540, 977, 1008, 1245, 1246, 1249], "substrat": [126, 127, 128, 308, 309, 483, 540, 589, 734, 977, 1008, 1245, 1246, 1249], "edg": [126, 135, 145, 584, 585, 1229, 1245], "legaci": [126, 145, 1245], "build_list": 126, "request": [126, 135, 191, 366, 375, 376, 378, 384, 517, 668, 781, 1036, 1037, 1066, 1177, 1187, 1199, 1247, 1250], "redund": [126, 135, 1060, 1247], "organis": [126, 997], "effici": [126, 1115, 1247], "thei": [126, 131, 135, 139, 532, 845, 957, 1067, 1124, 1246, 1247, 1249], "agre": [126, 1247], "except": [126, 135, 145, 384, 781, 1087, 1089, 1091, 1094, 1096, 1105, 1250], "isoform": [126, 127, 751, 975, 977, 979, 980, 982, 1098, 1099, 1141, 1142, 1144, 1163, 1196, 1220, 1221, 1247, 1250], "id_type_enzym": [127, 128, 995, 1247], "id_type_substr": [127, 128, 995], "ptmorthologi": 127, "enzymesubstrateprocessor": 127, "unifi": 127, "differ": [127, 135, 443, 448, 453, 909, 957, 972, 974, 1008, 1025, 1066, 1067, 1078, 1115, 1246, 1247, 1249, 1250], "chosen": 127, "mous": [127, 182, 211, 212, 213, 214, 220, 221, 222, 225, 226, 227, 228, 229, 230, 231, 232, 233, 234, 243, 244, 245, 349, 351, 419, 429, 430, 650, 665, 666, 754, 764, 765, 823, 824, 845, 898, 1245, 1246, 1247], "rat": [127, 182, 754, 845, 1245], "To": [127, 758, 759, 876, 972, 1112, 1247, 1250], "get": [127, 197, 406, 408, 411, 509, 972, 997, 1036, 1060, 1112, 1115, 1245, 1247, 1250], "themselv": 127, "both": [127, 135, 145, 171, 225, 406, 407, 408, 718, 835, 836, 857, 918, 942, 945, 1036, 1066, 1246, 1247, 1250], "whatmor": 127, "enzymesubstrateaggreg": [127, 1247], "swissprot": [127, 409, 469, 718, 918, 930, 937, 938, 939, 940, 941, 942, 971, 972, 1066, 1067, 1070, 1078, 1087, 1089, 1091, 1094, 1096, 1100, 1101, 1104, 1105, 1144, 1246, 1247], "trembl": [127, 918, 940, 941, 942, 972, 1066, 1067, 1070, 1078, 1246, 1247], "those": [127, 302, 782, 1058, 1067, 1089, 1096, 1124, 1202, 1247], "homolog": [127, 1089, 1096, 1247, 1250], "ptm": [127, 128, 132, 133, 340, 483, 751, 753, 844, 977, 981, 1008, 1012, 1013, 1098, 1247, 1249, 1250], "phosphosit": [127, 128, 774, 1098, 1247, 1249, 1250], "do": [127, 145, 654, 793, 895, 1008, 1045, 1048, 1050, 1067, 1245, 1250], "residu": [127, 296, 509, 524, 751, 754, 759, 882, 973, 977, 978, 980, 1098, 1108, 1110, 1141, 1163, 1195, 1205, 1247], "offset": [127, 366, 509, 524, 525, 707, 1098, 1107, 1108, 1141, 1247], "see": [127, 135, 145, 181, 188, 212, 275, 346, 347, 348, 350, 352, 353, 441, 442, 446, 447, 451, 452, 775, 893, 904, 905, 906, 909, 915, 918, 928, 958, 1046, 1058, 1066, 1067, 1078, 1079, 1080, 1161, 1226, 1229, 1241, 1243, 1244, 1246, 1247, 1250], "further": [127, 151, 294, 524, 553, 894, 955, 1108, 1112, 1115, 1137, 1245, 1247, 1250], "ptm_orthologi": [127, 1098], "phosphoryl": [127, 745, 751, 752, 1098, 1247], "site": [127, 296, 745, 751, 752, 753, 754, 755, 915, 945, 1098, 1140, 1247, 1249], "phosphositeplu": [127, 745, 751, 752, 753, 754, 1098], "follow": [127, 135, 302, 303, 342, 751, 834, 997, 1036, 1098, 1246, 1247], "6": [127, 136, 147, 165, 224, 236, 344, 428, 511, 527, 540, 553, 751, 757, 910, 945, 955, 1098, 1245, 1247], "letter": [127, 135, 384, 406, 407, 408, 414, 415, 416, 417, 751, 1098, 1115, 1163, 1205, 1247], "code": [127, 188, 260, 261, 403, 405, 406, 407, 408, 414, 415, 416, 417, 448, 453, 751, 906, 1067, 1078, 1080, 1098, 1241, 1243, 1244, 1247, 1249], "modif": [127, 194, 751, 973, 977, 1098, 1124, 1140, 1247], "set_inputarg": [127, 128], "x": [127, 145, 1098, 1233, 1234, 1235, 1236, 1237, 1238, 1241, 1243, 1244], "return_str": [127, 1098], "anyth": [127, 1030, 1039, 1042, 1060, 1067, 1098, 1229, 1241, 1244, 1247], "notat": [127, 1098, 1247], "amino": [127, 707, 879, 1098, 1247], "acid": [127, 707, 879, 1098, 1115, 1247], "offest": [127, 1098], "p00533_s231": [127, 1098], "domainmotif": [127, 588, 594, 1098, 1247], "typ": [127, 978, 980, 1098, 1247], "translate_sit": [127, 1098], "re": [127, 145, 881, 1098], "source_organ": [127, 187, 1098], "ortholog": [127, 665, 666, 726, 727, 754, 1087, 1089, 1091, 1094, 1096, 1098, 1100, 1101, 1104, 1105, 1246, 1247], "allow_mixed_organ": 128, "organisms_support": [128, 995], "sequencecontain": [128, 1098, 1247], "variou": [128, 145, 277, 357, 382, 443, 448, 453, 930, 1149, 1177, 1199, 1232, 1246, 1247], "obtain": [128, 135, 468, 469, 509, 847, 877, 878, 893, 972, 992, 1089, 1096, 1247], "lookup": [128, 668, 669, 1102], "ambigu": [128, 135, 1067, 1079, 1247], "map": [128, 133, 188, 190, 270, 313, 315, 479, 480, 509, 538, 629, 665, 666, 707, 709, 716, 717, 718, 719, 759, 793, 818, 821, 875, 877, 878, 912, 913, 960, 967, 971, 972, 997, 1108, 1137, 1233, 1234, 1235, 1236, 1237, 1238, 1241, 1243, 1244, 1246, 1247, 1249], "mismatch": 128, "mapper": [128, 1071, 1076, 1080, 1247], "speci": [128, 468, 469, 754, 893, 894, 1247, 1249], "forward": 128, "support": [131, 132, 133, 135, 145, 211, 214, 243, 244, 245, 349, 351, 406, 411, 419, 524, 764, 765, 974, 1089, 1246, 1247, 1249], "relationship": [131, 132, 133, 171, 288, 363, 411, 413, 429, 478, 665, 686, 977, 1087, 1089, 1091, 1094, 1096, 1100, 1101, 1104, 1245, 1246], "hold": [131, 713, 1112], "avail": [131, 180, 181, 182, 188, 189, 192, 194, 204, 220, 221, 222, 225, 226, 227, 228, 229, 230, 231, 232, 233, 234, 294, 345, 346, 352, 359, 364, 429, 430, 648, 649, 650, 668, 669, 714, 746, 748, 749, 750, 791, 823, 824, 845, 898, 909, 915, 918, 928, 945, 955, 972, 1067, 1078, 1080, 1112, 1161, 1246, 1247, 1250], "two": [132, 135, 145, 294, 340, 355, 441, 446, 451, 472, 665, 666, 707, 709, 793, 945, 958, 1067, 1080, 1087, 1089, 1091, 1094, 1096, 1100, 1229, 1233, 1234, 1235, 1236, 1237, 1238, 1246, 1247], "part": [132, 204, 213, 249, 346, 352, 516, 858, 1008, 1067, 1247, 1249, 1250], "resourceattribut": [132, 995, 998], "deriv": [132, 1008, 1233, 1243, 1247, 1250], "prefer": [132, 135, 406, 407, 408, 411, 778, 1067, 1077, 1078, 1246, 1247], "asdict": [132, 133, 135, 1087, 1089, 1091, 1096], "represent": [132, 135, 227, 1247], "has_interaction_typ": [132, 133], "depend": [132, 135, 190, 442, 447, 452, 1247, 1249], "comprehens": [133, 145, 346, 347, 348, 350, 352, 353, 1112, 1246, 1247, 1249, 1250], "It": [133, 135, 145, 974, 1008, 1029, 1036, 1037, 1066, 1067, 1068, 1078, 1079, 1087, 1089, 1091, 1094, 1096, 1105, 1226, 1246, 1247, 1250], "certain": [133, 135, 145, 665, 666, 1036, 1037, 1091, 1094, 1100, 1101, 1104, 1105, 1112, 1245], "ha": [133, 135, 145, 212, 213, 329, 406, 411, 592, 707, 974, 997, 1008, 1018, 1036, 1060, 1066, 1067, 1068, 1071, 1112, 1115, 1246, 1247, 1249, 1250], "within": [133, 442, 447, 452, 909, 915, 918, 928, 997, 1053, 1229, 1241, 1244, 1246, 1247, 1250], "has_dataset": 133, "meet": [133, 1087, 1091], "item": [133, 145, 366, 997, 1029, 1030, 1053, 1247], "dict_item": 133, "networkresourcekei": 133, "dict_kei": [133, 1247], "serialize_attr": [133, 135], "top_key_prefix": 133, "simple_dict": 133, "we": [134, 135, 260, 509, 854, 857, 1067, 1089, 1096, 1124, 1229, 1241, 1244, 1246, 1247, 1248, 1250], "rich": [134, 1246, 1247], "api": [134, 384, 400, 402, 407, 410, 412, 414, 416, 791, 909, 915, 918, 928, 972, 1112, 1246, 1249, 1250], "larg": [134, 139, 302, 504, 505, 553, 554, 555, 815, 1013, 1036, 1037, 1112, 1115, 1246, 1247, 1249, 1250], "reli": [134, 1247], "b": [135, 145, 346, 347, 348, 350, 352, 353, 861, 1018, 1066, 1124, 1247], "id_type_a": [135, 441, 446, 451, 793, 905, 960, 961, 962, 963, 964, 965, 966, 967, 968, 970, 971, 972, 1247], "id_type_b": [135, 441, 446, 451, 793, 905, 960, 961, 962, 963, 964, 965, 966, 967, 968, 970, 971, 972, 1081, 1247], "entity_type_a": [135, 965], "entity_type_b": [135, 965], "taxon_a": [135, 342, 965], "taxon_b": [135, 342, 965], "regul": [135, 145, 155, 260, 261, 863, 1250], "post": [135, 145, 973, 1036, 1140], "evid": [135, 145, 346, 347, 348, 350, 352, 353, 403, 405, 685, 713, 775, 854, 857, 977, 979, 980, 1247, 1249], "detail": [135, 145, 345, 349, 351, 355, 366, 533, 713, 854, 904, 909, 915, 918, 928, 945, 958, 973, 1067, 1078, 1079, 1246, 1247], "henc": [135, 474, 1066, 1247, 1249, 1250], "becom": 135, "add_evid": 135, "direction": [135, 145], "self": [135, 1112, 1245], "dir": [135, 1247], "networkresourc": [135, 145, 1008, 1025, 1247], "separ": [135, 267, 443, 448, 453, 553, 962, 965, 969, 999, 1008, 1025, 1067, 1080, 1124, 1247, 1249], "Or": [135, 145, 1247, 1250], "causal": [135, 1245, 1250], "stimul": [135, 856, 1247], "stimulatori": [135, 1247], "inhibit": [135, 856, 1247], "inhibitori": [135, 1247], "unknown": [135, 329, 965, 969, 980, 1247], "neutral": 135, "been": [135, 145, 329, 406, 408, 411, 974, 1008, 1040, 1066, 1067, 1068, 1115, 1246, 1247, 1249, 1250], "add_sign": 135, "sign": [135, 139, 145, 965, 1016], "resource_nam": [135, 145, 955], "ppi": [135, 221, 516, 517, 998, 1246, 1247], "posit": [135, 145, 717, 1053, 1108, 1233, 1234, 1235, 1236, 1237, 1238, 1247], "positive_sourc": 135, "neg": [135, 145, 342, 654, 1008, 1247], "negative_sourc": 135, "accordingli": 135, "node": [135, 145, 201, 1058, 1060, 1061, 1064, 1229], "specifi": [135, 145, 270, 894, 997, 1094, 1105, 1234, 1241, 1243, 1244], "wa": [135, 596, 909, 918, 928, 945, 1025, 1246, 1247], "complex_identifiers_by_data_model": [135, 145], "involv": [135, 296], "mai": [135, 145, 1115, 1247], "sound": 135, "so": [135, 145, 509, 553, 554, 555, 895, 1039, 1045, 1047, 1050, 1067, 1115, 1126, 1246, 1247], "small_molecul": [135, 145, 1067, 1247], "return_typ": 135, "altern": [135, 145, 443, 448, 453, 517, 553, 909, 915, 918, 928, 1059, 1067, 1078, 1080, 1246, 1247, 1250], "complex_identifiers_by_interaction_typ": [135, 145], "complex_identifiers_by_interaction_type_and_data_model": [135, 145], "complex_identifiers_by_interaction_type_and_data_model_and_resourc": [135, 145], "complex_identifiers_by_refer": [135, 145], "complex_identifiers_by_resourc": [135, 145], "complex_labels_by_data_model": [135, 145], "complex_labels_by_interaction_typ": [135, 145], "complex_labels_by_interaction_type_and_data_model": [135, 145], "complex_labels_by_interaction_type_and_data_model_and_resourc": [135, 145], "complex_labels_by_refer": [135, 145], "complex_labels_by_resourc": [135, 145], "complexes_by_data_model": [135, 145], "complexes_by_interaction_typ": [135, 145], "complexes_by_interaction_type_and_data_model": [135, 145], "complexes_by_interaction_type_and_data_model_and_resourc": [135, 145], "complexes_by_refer": [135, 145], "complexes_by_resourc": [135, 145], "only_interaction_typ": 135, "only_primari": 135, "by_refer": 135, "by_reference_resource_pair": 135, "along": [135, 1247], "major": [135, 754, 1246, 1247, 1249, 1250], "un": 135, "consensus_edg": [135, 1247], "count_complex_identifi": [135, 145], "count_complex_label": [135, 145], "count_complex": [135, 145, 1247], "count_data_model": [135, 145], "model": [135, 145, 188, 190, 192, 193, 194, 197, 1008], "count_degrees_direct": [135, 145], "concern": 135, "incom": [135, 145], "activ": [135, 145, 249, 296, 358, 360, 856, 1011, 1124, 1250], "around": [135, 145, 355, 717, 718, 719, 997, 1036, 1053, 1068, 1245, 1246], "mode": [135, 145, 978, 1247], "IN": [135, 145], "out": [135, 145, 1112, 1246, 1247], "outgo": [135, 145], "count_degrees_directed_in": [135, 145], "count_degrees_directed_out": [135, 145], "count_degrees_neg": [135, 145], "count_degrees_negative_in": [135, 145], "count_degrees_negative_out": [135, 145], "count_degrees_non_direct": [135, 145], "count_degrees_posit": [135, 145], "count_degrees_positive_in": [135, 145], "count_degrees_positive_out": [135, 145], "count_degrees_sign": [135, 145], "count_degrees_signed_in": [135, 145], "count_degrees_signed_out": [135, 145], "count_degrees_undirect": [135, 145], "count_ent": [135, 145], "count_identifi": [135, 145], "count_interaction_typ": [135, 145], "count_interact": [135, 145], "nonttyp": [135, 145], "unless": [135, 145, 1247], "count_interactions_undirect": [135, 145], "activity_flow": [135, 1008, 1247], "secondari": [135, 912, 945, 999, 1008, 1067, 1246, 1247], "source_entity_typ": 135, "target_entity_typ": 135, "count_interactions_0": [135, 145], "being": [135, 145, 194, 851, 1241, 1243, 1244], "awar": [135, 1247], "count_interactions_direct": [135, 145], "get_interact": [135, 145], "count_interactions_mutu": [135, 145], "explicit": [135, 294, 1067, 1080], "count_interactions_neg": [135, 145], "count_interactions_non_direct": [135, 145], "count_interactions_posit": [135, 145], "count_interactions_sign": [135, 145], "count_label": [135, 145], "count_lncrna_identifi": [135, 145], "count_lncrna_label": [135, 145], "count_lncrna": [135, 145], "count_mirna_identifi": [135, 145], "count_mirna_label": [135, 145], "count_mirna": [135, 145], "count_protein_identifi": [135, 145], "count_protein_label": [135, 145], "count_protein": [135, 145], "count_refer": [135, 145], "count_resource_nam": [135, 145], "count_resource_names_via": [135, 145], "count_resourc": [135, 145], "count_resources_via": [135, 145], "count_small_molecule_identifi": [135, 145], "count_small_molecule_label": [135, 145], "count_small_molecul": [135, 145], "data_models_by_data_model": [135, 145], "data_models_by_interaction_typ": [135, 145], "data_models_by_interaction_type_and_data_model": [135, 145], "data_models_by_interaction_type_and_data_model_and_resourc": [135, 145], "data_models_by_refer": [135, 145], "data_models_by_resourc": [135, 145], "datasets_by_data_model": [135, 145], "datasets_by_interaction_typ": [135, 145], "datasets_by_interaction_type_and_data_model": [135, 145], "datasets_by_interaction_type_and_data_model_and_resourc": [135, 145], "datasets_by_refer": [135, 145], "datasets_by_resourc": [135, 145], "degrees_directed_by_data_model": [135, 145], "degrees_directed_by_interaction_typ": [135, 145], "degrees_directed_by_interaction_type_and_data_model": [135, 145], "degrees_directed_by_interaction_type_and_data_model_and_resourc": [135, 145], "degrees_directed_by_refer": [135, 145], "degrees_directed_by_resourc": [135, 145], "degrees_directed_in_by_data_model": [135, 145], "degrees_directed_in_by_interaction_typ": [135, 145], "degrees_directed_in_by_interaction_type_and_data_model": [135, 145], "degrees_directed_in_by_interaction_type_and_data_model_and_resourc": [135, 145], "degrees_directed_in_by_refer": [135, 145], "degrees_directed_in_by_resourc": [135, 145], "degrees_directed_out_by_data_model": [135, 145], "degrees_directed_out_by_interaction_typ": [135, 145], "degrees_directed_out_by_interaction_type_and_data_model": [135, 145], "degrees_directed_out_by_interaction_type_and_data_model_and_resourc": [135, 145], "degrees_directed_out_by_refer": [135, 145], "degrees_directed_out_by_resourc": [135, 145], "degrees_negative_by_data_model": [135, 145], "degrees_negative_by_interaction_typ": [135, 145], "degrees_negative_by_interaction_type_and_data_model": [135, 145], "degrees_negative_by_interaction_type_and_data_model_and_resourc": [135, 145], "degrees_negative_by_refer": [135, 145], "degrees_negative_by_resourc": [135, 145], "degrees_negative_in_by_data_model": [135, 145], "degrees_negative_in_by_interaction_typ": [135, 145], "degrees_negative_in_by_interaction_type_and_data_model": [135, 145], "degrees_negative_in_by_interaction_type_and_data_model_and_resourc": [135, 145], "degrees_negative_in_by_refer": [135, 145], "degrees_negative_in_by_resourc": [135, 145], "degrees_negative_out_by_data_model": [135, 145], "degrees_negative_out_by_interaction_typ": [135, 145], "degrees_negative_out_by_interaction_type_and_data_model": [135, 145], "degrees_negative_out_by_interaction_type_and_data_model_and_resourc": [135, 145], "degrees_negative_out_by_refer": [135, 145], "degrees_negative_out_by_resourc": [135, 145], "degrees_non_directed_by_data_model": [135, 145], "degrees_non_directed_by_interaction_typ": [135, 145], "degrees_non_directed_by_interaction_type_and_data_model": [135, 145], "degrees_non_directed_by_interaction_type_and_data_model_and_resourc": [135, 145], "degrees_non_directed_by_refer": [135, 145], "degrees_non_directed_by_resourc": [135, 145], "degrees_positive_by_data_model": [135, 145], "degrees_positive_by_interaction_typ": [135, 145], "degrees_positive_by_interaction_type_and_data_model": [135, 145], "degrees_positive_by_interaction_type_and_data_model_and_resourc": [135, 145], "degrees_positive_by_refer": [135, 145], "degrees_positive_by_resourc": [135, 145], "degrees_positive_in_by_data_model": [135, 145], "degrees_positive_in_by_interaction_typ": [135, 145], "degrees_positive_in_by_interaction_type_and_data_model": [135, 145], "degrees_positive_in_by_interaction_type_and_data_model_and_resourc": [135, 145], "degrees_positive_in_by_refer": [135, 145], "degrees_positive_in_by_resourc": [135, 145], "degrees_positive_out_by_data_model": [135, 145], "degrees_positive_out_by_interaction_typ": [135, 145], "degrees_positive_out_by_interaction_type_and_data_model": [135, 145], "degrees_positive_out_by_interaction_type_and_data_model_and_resourc": [135, 145], "degrees_positive_out_by_refer": [135, 145], "degrees_positive_out_by_resourc": [135, 145], "degrees_signed_by_data_model": [135, 145], "degrees_signed_by_interaction_typ": [135, 145], "degrees_signed_by_interaction_type_and_data_model": [135, 145], "degrees_signed_by_interaction_type_and_data_model_and_resourc": [135, 145], "degrees_signed_by_refer": [135, 145], "degrees_signed_by_resourc": [135, 145], "degrees_signed_in_by_data_model": [135, 145], "degrees_signed_in_by_interaction_typ": [135, 145], "degrees_signed_in_by_interaction_type_and_data_model": [135, 145], "degrees_signed_in_by_interaction_type_and_data_model_and_resourc": [135, 145], "degrees_signed_in_by_refer": [135, 145], "degrees_signed_in_by_resourc": [135, 145], "degrees_signed_out_by_data_model": [135, 145], "degrees_signed_out_by_interaction_typ": [135, 145], "degrees_signed_out_by_interaction_type_and_data_model": [135, 145], "degrees_signed_out_by_interaction_type_and_data_model_and_resourc": [135, 145], "degrees_signed_out_by_refer": [135, 145], "degrees_signed_out_by_resourc": [135, 145], "degrees_undirected_by_data_model": [135, 145], "degrees_undirected_by_interaction_typ": [135, 145], "degrees_undirected_by_interaction_type_and_data_model": [135, 145], "degrees_undirected_by_interaction_type_and_data_model_and_resourc": [135, 145], "degrees_undirected_by_refer": [135, 145], "degrees_undirected_by_resourc": [135, 145], "direction_kei": 135, "dorothea_level": [135, 145, 1247, 1250], "liter": [135, 145, 249, 270, 331, 429, 430, 440, 441, 442, 443, 465, 534, 665, 666, 674, 790, 791, 854, 857, 858, 945, 1008, 1066, 1067, 1087, 1091, 1094, 1100, 1101, 1104, 1105], "c": [135, 346, 352, 398, 400, 401, 402, 406, 407, 408, 410, 411, 412, 414, 415, 416, 417, 823, 824, 1018, 1061, 1064, 1124, 1233, 1234, 1235, 1236, 1237, 1238, 1247], "d": [135, 346, 352, 997, 1018, 1124, 1247], "dorothea": [135, 145, 1008, 1025, 1249, 1250], "confid": [135, 145, 213, 346, 347, 348, 350, 352, 353, 501, 502, 851, 854, 857, 858, 1018, 1025, 1087, 1094, 1100, 1101, 1104, 1105, 1247, 1250], "due": [135, 1067, 1246, 1247], "natur": [135, 637, 1112, 1246], "symbol": [135, 145, 392, 393, 394, 443, 448, 453, 649, 650, 713, 754, 787, 911, 960, 967, 971, 1067, 1073, 1074, 1077, 1078, 1080, 1089, 1163, 1205, 1246, 1247, 1250], "take": [135, 190, 721, 722, 724, 725, 726, 727, 728, 1066, 1067, 1078, 1112, 1229, 1246, 1247], "highest": [135, 406, 411, 851, 1060, 1250], "drop": [135, 1247], "rest": [135, 294, 366, 400, 402, 407, 410, 412, 414, 416, 909, 915, 918, 928, 1250], "five": [135, 479, 1067, 1078, 1080, 1246, 1247], "entities_by_data_model": [135, 145], "entities_by_interaction_typ": [135, 145], "entities_by_interaction_type_and_data_model": [135, 145], "entities_by_interaction_type_and_data_model_and_resourc": [135, 145], "entities_by_refer": [135, 145], "entities_by_resourc": [135, 145], "evaluate_evid": 135, "this_direct": 135, "evalu": [135, 1058, 1247], "generate_df_record": 135, "by_sourc": [135, 145, 1124], "with_refer": [135, 145], "becaus": [135, 234, 241, 443, 448, 453, 721, 722, 724, 725, 726, 727, 728, 1012, 1124, 1126, 1247, 1250], "need": [135, 249, 442, 447, 452, 505, 509, 524, 649, 895, 1037, 1067, 1078, 1112, 1115, 1245, 1247, 1250], "group": [135, 145, 288, 359, 671, 672, 673, 674, 675, 958, 1112, 1169, 1225, 1246, 1247, 1249], "By": [135, 145, 213, 442, 447, 452, 553, 554, 555, 648, 650, 890, 909, 1008, 1045, 1050, 1058, 1060, 1087, 1094, 1100, 1101, 1104, 1105, 1112, 1247, 1250], "most": [135, 194, 204, 406, 411, 845, 921, 1016, 1042, 1068, 1187, 1246, 1247], "applic": [135, 1246, 1247], "refrenc": 135, "still": [135, 1067, 1078, 1080, 1246, 1247], "rare": [135, 1067, 1078, 1080], "increas": [135, 139, 1247], "size": [135, 139, 366, 517, 845, 1037, 1112, 1115, 1225, 1247], "significantli": 135, "get_attr": 135, "extract": [135, 193, 221, 265, 318, 366, 442, 447, 452, 483, 484, 554, 708, 791, 812, 815, 913, 1036, 1037, 1112, 1115, 1247], "get_complex_identifi": [135, 145], "get_complex_label": [135, 145], "get_complex": [135, 145, 1247], "get_data_model": [135, 145], "get_dataset": [135, 145], "get_degre": 135, "get_degrees_direct": [135, 145], "get_degrees_directed_in": [135, 145], "get_degrees_directed_out": [135, 145], "get_degrees_neg": [135, 145], "get_degrees_negative_in": [135, 145], "get_degrees_negative_out": [135, 145], "get_degrees_non_direct": [135, 145], "get_degrees_posit": [135, 145], "get_degrees_positive_in": [135, 145], "get_degrees_positive_out": [135, 145], "get_degrees_sign": [135, 145], "get_degrees_signed_in": [135, 145], "get_degrees_signed_out": [135, 145], "get_degrees_undirect": [135, 145], "get_direct": [135, 1247], "state": [135, 145, 207, 448, 453, 1115, 1247], "src": [135, 1249], "tgt": 135, "get_ent": [135, 145], "get_identifi": [135, 145], "get_interaction_typ": [135, 145, 1247], "get_interactions_0": [135, 145], "get_interactions_direct": [135, 145], "get_interactions_mutu": [135, 145], "get_interactions_neg": [135, 145], "get_interactions_non_direct": [135, 145], "get_interactions_non_directed_0": [135, 145], "sort": [135, 1247, 1249], "insid": [135, 1067], "get_interactions_posit": [135, 145, 1247], "get_interactions_sign": [135, 145], "get_interactions_undirect": [135, 145], "matter": [135, 145, 1025, 1067, 1246, 1247], "get_interactions_undirected_0": [135, 145], "get_label": [135, 145], "get_lncrna_identifi": [135, 145], "get_lncrna_label": [135, 145], "get_lncrna": [135, 145], "get_mirna_identifi": [135, 145], "get_mirna_label": [135, 145], "get_mirna": [135, 145], "get_protein_identifi": [135, 145], "get_protein_label": [135, 145], "get_protein": [135, 145, 1112], "get_refer": [135, 145, 1247], "get_resource_nam": [135, 145, 1247], "get_resource_names_via": [135, 145], "get_resources_via": [135, 145], "get_sign": [135, 1247], "diret": 135, "th": [135, 1066], "denot": 135, "get_small_molecule_identifi": [135, 145], "get_small_molecule_label": [135, 145], "get_small_molecul": [135, 145], "has_sign": 135, "identifiers_by_data_model": [135, 145], "identifiers_by_interaction_typ": [135, 145], "identifiers_by_interaction_type_and_data_model": [135, 145], "identifiers_by_interaction_type_and_data_model_and_resourc": [135, 145], "identifiers_by_refer": [135, 145], "identifiers_by_resourc": [135, 145], "interaction_types_by_data_model": [135, 145], "interaction_types_by_interaction_typ": [135, 145], "interaction_types_by_interaction_type_and_data_model": [135, 145], "interaction_types_by_interaction_type_and_data_model_and_resourc": [135, 145], "interaction_types_by_refer": [135, 145], "interaction_types_by_resourc": [135, 145], "interactions_0_by_data_model": [135, 145], "interactions_0_by_interaction_typ": [135, 145], "interactions_0_by_interaction_type_and_data_model": [135, 145], "interactions_0_by_interaction_type_and_data_model_and_resourc": [135, 145], "interactions_0_by_refer": [135, 145], "interactions_0_by_resourc": [135, 145], "interactions_by_data_model": [135, 145], "interactions_by_interaction_typ": [135, 145], "interactions_by_interaction_type_and_data_model": [135, 145], "interactions_by_interaction_type_and_data_model_and_resourc": [135, 145], "interactions_by_refer": [135, 145], "interactions_by_resourc": [135, 145], "interactions_directed_by_data_model": [135, 145], "interactions_directed_by_interaction_typ": [135, 145], "interactions_directed_by_interaction_type_and_data_model": [135, 145], "interactions_directed_by_interaction_type_and_data_model_and_resourc": [135, 145], "interactions_directed_by_refer": [135, 145], "interactions_directed_by_resourc": [135, 145], "interactions_mutual_by_data_model": [135, 145], "interactions_mutual_by_interaction_typ": [135, 145], "interactions_mutual_by_interaction_type_and_data_model": [135, 145], "interactions_mutual_by_interaction_type_and_data_model_and_resourc": [135, 145], "interactions_mutual_by_refer": [135, 145], "interactions_mutual_by_resourc": [135, 145], "interactions_negative_by_data_model": [135, 145], "interactions_negative_by_interaction_typ": [135, 145], "interactions_negative_by_interaction_type_and_data_model": [135, 145], "interactions_negative_by_interaction_type_and_data_model_and_resourc": [135, 145], "interactions_negative_by_refer": [135, 145], "interactions_negative_by_resourc": [135, 145], "interactions_non_directed_0_by_data_model": [135, 145], "interactions_non_directed_0_by_interaction_typ": [135, 145], "interactions_non_directed_0_by_interaction_type_and_data_model": [135, 145], "interactions_non_directed_0_by_interaction_type_and_data_model_and_resourc": [135, 145], "interactions_non_directed_0_by_refer": [135, 145], "interactions_non_directed_0_by_resourc": [135, 145], "interactions_non_directed_by_data_model": [135, 145], "interactions_non_directed_by_interaction_typ": [135, 145], "interactions_non_directed_by_interaction_type_and_data_model": [135, 145], "interactions_non_directed_by_interaction_type_and_data_model_and_resourc": [135, 145], "interactions_non_directed_by_refer": [135, 145], "interactions_non_directed_by_resourc": [135, 145], "interactions_positive_by_data_model": [135, 145], "interactions_positive_by_interaction_typ": [135, 145], "interactions_positive_by_interaction_type_and_data_model": [135, 145], "interactions_positive_by_interaction_type_and_data_model_and_resourc": [135, 145], "interactions_positive_by_refer": [135, 145], "interactions_positive_by_resourc": [135, 145], "interactions_signed_by_data_model": [135, 145], "interactions_signed_by_interaction_typ": [135, 145], "interactions_signed_by_interaction_type_and_data_model": [135, 145], "interactions_signed_by_interaction_type_and_data_model_and_resourc": [135, 145], "interactions_signed_by_refer": [135, 145], "interactions_signed_by_resourc": [135, 145], "interactions_undirected_0_by_data_model": [135, 145], "interactions_undirected_0_by_interaction_typ": [135, 145], "interactions_undirected_0_by_interaction_type_and_data_model": [135, 145], "interactions_undirected_0_by_interaction_type_and_data_model_and_resourc": [135, 145], "interactions_undirected_0_by_refer": [135, 145], "interactions_undirected_0_by_resourc": [135, 145], "interactions_undirected_by_data_model": [135, 145], "interactions_undirected_by_interaction_typ": [135, 145], "interactions_undirected_by_interaction_type_and_data_model": [135, 145], "interactions_undirected_by_interaction_type_and_data_model_and_resourc": [135, 145], "interactions_undirected_by_refer": [135, 145], "interactions_undirected_by_resourc": [135, 145], "is_direct": [135, 965, 1247], "is_directed_by_resourc": 135, "is_inhibit": [135, 1247], "is_loop": 135, "loop": [135, 145, 1233, 1234, 1235, 1236, 1237, 1238, 1245], "endpoint": [135, 145, 384, 1247], "is_mutu": 135, "is_mutual_by_resourc": 135, "is_stimul": [135, 1247], "activatori": 135, "iter_evid": 135, "iter_match_evid": 135, "labels_by_data_model": [135, 145], "labels_by_interaction_typ": [135, 145], "labels_by_interaction_type_and_data_model": [135, 145], "labels_by_interaction_type_and_data_model_and_resourc": [135, 145], "labels_by_refer": [135, 145], "labels_by_resourc": [135, 145], "lncrna_identifiers_by_data_model": [135, 145], "lncrna_identifiers_by_interaction_typ": [135, 145], "lncrna_identifiers_by_interaction_type_and_data_model": [135, 145], "lncrna_identifiers_by_interaction_type_and_data_model_and_resourc": [135, 145], "lncrna_identifiers_by_refer": [135, 145], "lncrna_identifiers_by_resourc": [135, 145], "lncrna_labels_by_data_model": [135, 145], "lncrna_labels_by_interaction_typ": [135, 145], "lncrna_labels_by_interaction_type_and_data_model": [135, 145], "lncrna_labels_by_interaction_type_and_data_model_and_resourc": [135, 145], "lncrna_labels_by_refer": [135, 145], "lncrna_labels_by_resourc": [135, 145], "lncrnas_by_data_model": [135, 145], "lncrnas_by_interaction_typ": [135, 145], "lncrnas_by_interaction_type_and_data_model": [135, 145], "lncrnas_by_interaction_type_and_data_model_and_resourc": [135, 145], "lncrnas_by_refer": [135, 145], "lncrnas_by_resourc": [135, 145], "majority_dir": 135, "equal": [135, 1008], "majority_sign": 135, "straight": [135, 1229, 1233, 1234, 1235, 1236, 1237, 1238, 1247], "revers": [135, 1067, 1247], "mean": [135, 145, 190, 443, 448, 453, 524, 553, 791, 845, 978, 995, 1008, 1029, 1067, 1068, 1077, 1079, 1081, 1112, 1247], "anoth": [135, 441, 443, 446, 448, 451, 453, 1058, 1161, 1246, 1247, 1250], "mirna_identifiers_by_data_model": [135, 145], "mirna_identifiers_by_interaction_typ": [135, 145], "mirna_identifiers_by_interaction_type_and_data_model": [135, 145], "mirna_identifiers_by_interaction_type_and_data_model_and_resourc": [135, 145], "mirna_identifiers_by_refer": [135, 145], "mirna_identifiers_by_resourc": [135, 145], "mirna_labels_by_data_model": [135, 145], "mirna_labels_by_interaction_typ": [135, 145], "mirna_labels_by_interaction_type_and_data_model": [135, 145], "mirna_labels_by_interaction_type_and_data_model_and_resourc": [135, 145], "mirna_labels_by_refer": [135, 145], "mirna_labels_by_resourc": [135, 145], "mirnas_by_data_model": [135, 145], "mirnas_by_interaction_typ": [135, 145], "mirnas_by_interaction_type_and_data_model": [135, 145], "mirnas_by_interaction_type_and_data_model_and_resourc": [135, 145], "mirnas_by_refer": [135, 145], "mirnas_by_resourc": [135, 145], "negative_a_b": 135, "a_b": 135, "negative_b_a": 135, "b_a": 135, "negative_resources_a_b": 135, "negative_resources_b_a": 135, "negative_revers": 135, "negative_straight": 135, "positive_a_b": 135, "positive_b_a": 135, "positive_resources_a_b": 135, "positive_resources_b_a": 135, "positive_revers": 135, "positive_straight": 135, "protein_identifiers_by_data_model": [135, 145], "protein_identifiers_by_interaction_typ": [135, 145], "protein_identifiers_by_interaction_type_and_data_model": [135, 145], "protein_identifiers_by_interaction_type_and_data_model_and_resourc": [135, 145], "protein_identifiers_by_refer": [135, 145], "protein_identifiers_by_resourc": [135, 145], "protein_labels_by_data_model": [135, 145], "protein_labels_by_interaction_typ": [135, 145], "protein_labels_by_interaction_type_and_data_model": [135, 145], "protein_labels_by_interaction_type_and_data_model_and_resourc": [135, 145], "protein_labels_by_refer": [135, 145], "protein_labels_by_resourc": [135, 145], "proteins_by_data_model": [135, 145], "proteins_by_interaction_typ": [135, 145], "proteins_by_interaction_type_and_data_model": [135, 145], "proteins_by_interaction_type_and_data_model_and_resourc": [135, 145], "proteins_by_refer": [135, 145], "proteins_by_resourc": [135, 145], "references_by_data_model": [135, 145], "references_by_interaction_typ": [135, 145], "references_by_interaction_type_and_data_model": [135, 145], "references_by_interaction_type_and_data_model_and_resourc": [135, 145], "references_by_refer": [135, 145], "references_by_resourc": [135, 145, 1247], "resource_names_by_data_model": [135, 145], "resource_names_by_interaction_typ": [135, 145], "resource_names_by_interaction_type_and_data_model": [135, 145], "resource_names_by_interaction_type_and_data_model_and_resourc": [135, 145], "resource_names_by_refer": [135, 145], "resource_names_by_resourc": [135, 145], "resource_names_via_by_data_model": [135, 145], "resource_names_via_by_interaction_typ": [135, 145], "resource_names_via_by_interaction_type_and_data_model": [135, 145], "resource_names_via_by_interaction_type_and_data_model_and_resourc": [135, 145], "resource_names_via_by_refer": [135, 145], "resource_names_via_by_resourc": [135, 145], "resources_a_b": 135, "resources_b_a": 135, "resources_by_data_model": [135, 145], "resources_by_interaction_typ": [135, 145], "resources_by_interaction_type_and_data_model": [135, 145], "resources_by_interaction_type_and_data_model_and_resourc": [135, 145], "resources_by_refer": [135, 145], "resources_by_resourc": [135, 145], "resources_undirect": 135, "resources_via_by_data_model": [135, 145], "resources_via_by_interaction_typ": [135, 145], "resources_via_by_interaction_type_and_data_model": [135, 145], "resources_via_by_interaction_type_and_data_model_and_resourc": [135, 145], "resources_via_by_refer": [135, 145], "resources_via_by_resourc": [135, 145], "serialize_evid": 135, "small_molecule_identifiers_by_data_model": [135, 145], "small_molecule_identifiers_by_interaction_typ": [135, 145], "small_molecule_identifiers_by_interaction_type_and_data_model": [135, 145], "small_molecule_identifiers_by_interaction_type_and_data_model_and_resourc": [135, 145], "small_molecule_identifiers_by_refer": [135, 145], "small_molecule_identifiers_by_resourc": [135, 145], "small_molecule_labels_by_data_model": [135, 145], "small_molecule_labels_by_interaction_typ": [135, 145], "small_molecule_labels_by_interaction_type_and_data_model": [135, 145], "small_molecule_labels_by_interaction_type_and_data_model_and_resourc": [135, 145], "small_molecule_labels_by_refer": [135, 145], "small_molecule_labels_by_resourc": [135, 145], "small_molecules_by_data_model": [135, 145], "small_molecules_by_interaction_typ": [135, 145], "small_molecules_by_interaction_type_and_data_model": [135, 145], "small_molecules_by_interaction_type_and_data_model_and_resourc": [135, 145], "small_molecules_by_refer": [135, 145], "small_molecules_by_resourc": [135, 145], "bidirect": 135, "sources_revers": 135, "sources_straight": 135, "sources_undirect": 135, "src_by_resourc": 135, "found": [135, 139, 145, 997, 1067, 1078, 1080, 1108, 1247], "invalid": [135, 1247], "tgt_by_resourc": 135, "new_attr": 135, "abl": [135, 145, 179, 649, 1036, 1246, 1247], "chang": [135, 329, 909, 915, 918, 928, 958, 1039, 1042, 1053, 1067, 1246, 1247], "1956": [135, 1247], "entrez": [135, 428, 468, 469, 649, 1066, 1067, 1078, 1080, 1089, 1096, 1247], "copi": [135, 241, 958, 995, 1246, 1247], "unset_dir": 135, "remov": [135, 139, 145, 267, 326, 397, 398, 409, 793, 958, 997, 1008, 1060, 1066, 1067, 1068, 1108, 1115, 1137, 1139, 1140, 1247, 1249], "unset_direct": 135, "unset_interaction_typ": 135, "unset_sign": 135, "positive_attribut": 135, "must": [135, 145, 249, 443, 448, 453, 1008, 1087, 1089, 1091, 1096, 1172, 1229, 1247, 1250], "which_direct": 135, "second": [135, 145, 355, 517, 665, 666, 707, 716, 717, 719, 759, 793, 879, 1066, 1067, 1068, 1115, 1247], "which_dir": 135, "which_sign": 135, "id_a": [136, 145, 688, 978, 1247], "id_b": [136, 145, 688, 978, 1247], "type_a": [136, 1247], "type_b": [136, 1247], "dmodel": [136, 1247], "4": [136, 145, 147, 165, 167, 213, 224, 236, 344, 427, 428, 471, 511, 540, 685, 757, 851, 910, 955, 999, 1095, 1109, 1224, 1229, 1241, 1244, 1245, 1247, 1250], "7": [136, 147, 165, 201, 278, 342, 344, 428, 443, 448, 453, 540, 757, 910, 955, 1245, 1246, 1247, 1250], "5": [136, 147, 165, 224, 236, 344, 427, 428, 432, 433, 443, 448, 453, 511, 529, 540, 757, 910, 955, 1067, 1078, 1115, 1224, 1245, 1246, 1247], "9": [136, 147, 152, 344, 944, 955, 1245, 1246, 1247], "8": [136, 147, 344, 529, 540, 955, 1036, 1037, 1245, 1246, 1247], "entity_a": [137, 145], "entity_b": [137, 145], "cellphonedb_categori": 139, "baccin_categori": 139, "hpmr_categori": 139, "surfaceome_categori": 139, "gpcrdb_categori": 139, "icellnet_categori": 139, "customannot": [139, 955, 957, 958, 1247], "transmitter_receiv": 139, "only_gener": 139, "only_composit": 139, "only_funct": 139, "exclude_intracellular": 139, "On": [139, 1247], "transmitt": [139, 955, 958, 1247, 1250], "receiv": [139, 955, 958, 1247, 1250], "allow": [139, 145, 249, 1008, 1093, 1247], "resource_specif": [139, 955, 958, 1247, 1250], "locat": [139, 294, 788, 958, 1068, 1246, 1247, 1249, 1250], "often": [139, 553, 554, 555, 1068, 1246, 1247], "relev": [139, 145, 192, 193, 1247], "intracellular": 139, "o14976": 143, "o15231": 143, "o43294": 143, "o60711": 143, "o60759": 143, "p07332": 143, "p29965": 143, "p35221": 143, "p35222": 143, "p50552": 143, "p56945": 143, "q02297": 143, "q03001": 143, "q13153": 143, "q13895": 143, "q14451": 143, "q14511": 143, "q14943": 143, "q14952": 143, "q14953": 143, "q155q3": 143, "q15654": 143, "q5jra6": 143, "q5t4b2": 143, "q7l5y9": 143, "q7z4i7": 143, "q86tp1": 143, "q8ivt2": 143, "q8izw8": 143, "q8n264": 143, "q8n743": 143, "q8nhk3": 143, "q8wx93": 143, "q92502": 143, "q96ac1": 143, "q96if1": 143, "q96qb1": 143, "q99689": 143, "q9h792": 143, "q9hbi0": 143, "q9hbi1": 143, "q9nq75": 143, "q9ubt7": 143, "q9ugi8": 143, "q9ugp4": 143, "q9ui47": 143, "q9uqb3": 143, "cell_surface_enzym": 143, "o00391": 143, "p04843": 143, "p08842": 143, "p09958": 143, "p11117": 143, "p19021": 143, "p40126": 143, "p52961": 143, "q13444": 143, "q15125": 143, "q8tcj2": 143, "q8wud6": 143, "q96jj7": 143, "q9nph5": 143, "q9uk23": 143, "q9ukf2": 143, "cell_surface_ligand": 143, "p0dpd6": 143, "ligand": [143, 211, 212, 213, 214, 222, 224, 225, 226, 228, 229, 230, 231, 232, 233, 239, 240, 243, 245, 280, 281, 376, 424, 472, 511, 579, 725, 727, 787, 823, 825, 1250], "o00220": 143, "o00300": 143, "o00468": 143, "o00587": 143, "o00592": 143, "o14594": 143, "o14649": 143, "o14672": 143, "o15031": 143, "o15197": 143, "o15496": 143, "o43157": 143, "o43184": 143, "o43278": 143, "o43852": 143, "o43914": 143, "o60462": 143, "o60469": 143, "o60486": 143, "o60494": 143, "o75051": 143, "o75077": 143, "o75330": 143, "o75508": 143, "o75509": 143, "o75534": 143, "o75596": 143, "o94887": 143, "o95084": 143, "o95236": 143, "o95274": 143, "o95428": 143, "o95467": 143, "o95711": 143, "o95754": 143, "p00451": 143, "p00488": 143, "p00734": 143, "p00740": 143, "p00742": 143, "p00748": 143, "p00749": 143, "p00750": 143, "p00797": 143, "p00813": 143, "p00995": 143, "p01008": 143, "p01009": 143, "p01023": 143, "p01024": 143, "p01031": 143, "p01033": 143, "p01112": 143, "p01589": 143, "p02452": [143, 1247], "p02458": [143, 1247], "p02461": [143, 1247], "p02462": [143, 1247], "p02654": 143, "p02671": 143, "p02675": 143, "p02679": 143, "p02741": 143, "p02745": 143, "p02746": 143, "p02751": 143, "p02753": 143, "p02765": 143, "p02768": 143, "p02788": 143, "p03951": 143, "p03956": 143, "p03973": 143, "p04003": 143, "p04070": 143, "p04196": 143, "p04278": 143, "p04626": 143, "p04899": 143, "p05067": 143, "p05106": 143, "p05107": 143, "p05121": 143, "p05155": 143, "p05543": 143, "p05556": 143, "p05997": 143, "p06454": 143, "p06734": 143, "p06756": [143, 1247], "p06858": 143, "p07093": 143, "p07225": 143, "p07237": 143, "p07288": 143, "p07602": 143, "p07900": 143, "p08034": 143, "p08069": 143, "p08123": 143, "p08174": 143, "p08236": 143, "p08253": 143, "p08514": 143, "p08571": 143, "p08572": [143, 1247], "p08575": 143, "p08582": 143, "p08603": 143, "p08670": 143, "p08709": 143, "p08861": 143, "p08865": 143, "p09211": 143, "p09237": 143, "p09417": 143, "p09429": 143, "p0c0l4": 143, "p0c7t3": 143, "p0cg37": 143, "p0dmv8": 143, "p0dp23": [143, 1247], "p0dp24": [143, 1247], "p0dp25": [143, 1247], "p10144": 143, "p10153": 143, "p10586": 143, "p10646": 143, "p11150": 143, "p11226": 143, "p11229": 143, "p11362": [143, 1247], "p11912": 143, "p12107": 143, "p12109": 143, "p12110": 143, "p12821": 143, "p12830": 143, "p13385": 143, "p13591": 143, "p13612": 143, "p13637": 143, "p13688": 143, "p14416": [143, 1247], "p14618": 143, "p14625": 143, "p14778": 143, "p14780": 143, "p15151": 143, "p15531": 143, "p15907": 143, "p16035": 143, "p16070": 143, "p16109": 143, "p16473": 143, "p16520": 143, "p16671": 143, "p17302": 143, "p17752": 143, "p17948": 143, "p18564": 143, "p19113": 143, "p19823": 143, "p19835": 143, "p20062": 143, "p20273": 143, "p20292": 143, "p20309": 143, "p20849": 143, "p20908": 143, "p20916": 143, "p21462": 143, "p21709": 143, "p21802": 143, "p21810": 143, "p21815": 143, "p21860": 143, "p21917": 143, "p21941": 143, "p21980": 143, "p22392": 143, "p22692": 143, "p22897": 143, "p23471": 143, "p23515": 143, "p25063": 143, "p25090": 143, "p25940": 143, "p25942": 143, "p26012": 143, "p26441": 143, "p26842": 143, "p27658": 143, "p28335": 143, "p28907": 143, "p28908": 143, "p29317": 143, "p29322": 143, "p29323": 143, "p29400": 143, "p30530": 143, "p30533": 143, "p30542": 143, "p30874": 143, "p31025": 143, "p31785": 143, "p35212": 143, "p35354": 143, "p35475": 143, "p35555": 143, "p35613": 143, "p35625": 143, "p36383": 143, "p36897": 143, "p36941": 143, "p39019": 143, "p39060": 143, "p39900": 143, "p41143": 143, "p41594": 143, "p42081": 143, "p42127": 143, "p43121": 143, "p43405": 143, "p43489": 143, "p43490": 143, "p45452": 143, "p48039": 143, "p48651": 143, "p49768": 143, "p49913": 143, "p50052": 143, "p51654": 143, "p52945": 143, "p53420": 143, "p54577": 143, "p54753": 143, "p54756": 143, "p54760": 143, "p54762": 143, "p54764": 143, "p55058": 143, "p55789": 143, "p56159": 143, "p61626": 143, "p61769": 143, "p62987": 143, "p63092": 143, "p78310": 143, "p78324": 143, "p78536": 143, "p80188": [143, 1247], "p80303": 143, "p84077": 143, "p84996": 143, "p98160": 143, "p98164": 143, "q01469": 143, "q01955": 143, "q02094": 143, "q02388": 143, "q02817": 143, "q04721": 143, "q05707": 143, "q07326": 143, "q07954": 143, "q08334": 143, "q08722": 143, "q08828": 143, "q10588": 143, "q12913": 143, "q12918": 143, "q12933": 143, "q13158": 143, "q13241": 143, "q13255": [143, 1247], "q13352": 143, "q13361": 143, "q13442": 143, "q13443": 143, "q13477": 143, "q13936": [143, 1247], "q14031": 143, "q14050": 143, "q14055": 143, "q14118": 143, "q14242": 143, "q14766": 143, "q15165": 143, "q15223": 143, "q15262": 143, "q15303": 143, "q15375": 143, "q15762": 143, "q16613": 143, "q2mv58": 143, "q2vpa4": 143, "q4vx76": 143, "q5jwf2": 143, "q5sr53": 143, "q5t442": 143, "q5t5a4": 143, "q6nw40": 143, "q6uww8": 143, "q6uwx4": 143, "q6v0i7": 143, "q7z6a9": 143, "q86ur5": 143, "q8iwl1": 143, "q8izj3": 143, "q8izl2": 143, "q8n2x6": 143, "q8n474": 143, "q8nfk1": 143, "q8nft8": 143, "q8ngh5": 143, "q8ngh8": 143, "q8nhj6": 143, "q8nhp8": 143, "q8tax7": 143, "q8wtv0": 143, "q8wwy8": 143, "q8wz79": 143, "q92819": 143, "q92854": 143, "q92896": 143, "q92956": 143, "q96a49": 143, "q96cg8": 143, "q96da0": 143, "q96fe5": 143, "q99259": 143, "q99466": 143, "q99965": 143, "q9bq66": 143, "q9bs26": 143, "q9bx66": 143, "q9bzr6": 143, "q9bzw8": 143, "q9bzz2": [143, 1247], "q9c0c4": 143, "q9h2a7": 143, "q9h2e6": 143, "q9h3s1": 143, "q9h9h4": 143, "q9hcm2": 143, "q9nqc3": 143, "q9nr96": 143, "q9nrv9": 143, "q9nsg2": 143, "q9ntn9": 143, "q9nup9": 143, "q9nv23": 143, "q9nwz3": 143, "q9nx52": 143, "q9nzc2": 143, "q9nzr2": 143, "q9uby5": [143, 1247], "q9uhg3": 143, "q9uiw2": 143, "q9uju6": 143, "q9ukq2": 143, "q9ulp9": 143, "q9um47": 143, "q9uq26": 143, "q9xrx5": 143, "q9y215": 143, "q9y2i2": 143, "q9y4d7": 143, "q9y566": 143, "q9y5u5": 143, "q9y624": 143, "q9y625": 143, "q9y6n7": 143, "receptor": [143, 145, 211, 212, 213, 214, 222, 224, 225, 226, 228, 229, 230, 231, 232, 233, 236, 239, 240, 243, 245, 280, 281, 376, 471, 472, 511, 579, 787, 823, 825, 1250], "a6nfa1": 143, "b2ruy7": 143, "b4ds77": 143, "o00170": 143, "o00548": 143, "o00555": 143, "o14493": 143, "o14638": 143, "o14788": 143, "o14795": 143, "o15162": 143, "o15374": 143, "o15551": 143, "o15554": 143, "o43525": 143, "o43813": 143, "o43866": 143, "o43921": 143, "o60291": 143, "o60359": 143, "o75078": 143, "o75106": 143, "o75144": 143, "o75575": 143, "o75923": 143, "o94772": 143, "o94779": 143, "o94856": 143, "o95196": 143, "o95259": 143, "o95477": 143, "o95727": 143, "o95897": 143, "o95967": 143, "o95994": 143, "o95998": 143, "p00747": 143, "p01133": 143, "p01303": [143, 1247], "p01889": 143, "p01903": 143, "p01906": 143, "p01909": 143, "p01911": 143, "p01920": 143, "p02649": 143, "p04004": 143, "p04439": 143, "p05026": 143, "p05156": 143, "p05187": 143, "p05231": 143, "p05362": 143, "p05538": 143, "p07942": 143, "p09326": 143, "p09917": 143, "p09923": 143, "p10321": 143, "p10589": 143, "p11168": 143, "p13056": 143, "p13569": 143, "p13598": 143, "p13765": 143, "p15514": 143, "p15813": 143, "p16422": [143, 1247], "p16581": 143, "p17693": 143, "p17813": 143, "p18433": 143, "p19256": 143, "p19801": 143, "p20827": 143, "p21246": 143, "p21589": 143, "p21926": 143, "p22001": 143, "p22460": 143, "p22736": 143, "p23276": 143, "p23510": 143, "p24043": 143, "p25098": 143, "p25189": 143, "p26038": 143, "p27701": 143, "p27824": 143, "p28906": 143, "p29016": 143, "p29033": 143, "p29460": 143, "p29972": 143, "p30301": 143, "p30511": 143, "p31431": 143, "p31749": [143, 1247], "p31997": 143, "p32004": 143, "p32942": 143, "p32970": 143, "p32971": 143, "p35499": 143, "p36021": 143, "p36269": 143, "p41235": 143, "p48050": 143, "p48509": 143, "p48552": 143, "p50591": 143, "p51787": 143, "p51828": 143, "p52797": 143, "p52798": 143, "p52799": 143, "p52803": 143, "p54709": 143, "p54750": 143, "p54851": 143, "p55157": 143, "p55160": 143, "p55268": 143, "p56705": 143, "p57057": 143, "p57087": 143, "p57739": 143, "p58401": 143, "p61160": 143, "p62079": 143, "p62955": 143, "p78504": 143, "p78509": 143, "p78562": 143, "p79483": 143, "p84022": 143, "p84157": 143, "p98172": 143, "q00994": 143, "q01064": 143, "q02108": 143, "q02153": 143, "q02246": 143, "q02413": 143, "q02641": 143, "q02846": 143, "q03135": [143, 1247], "q04724": 143, "q05940": 143, "q06643": 143, "q07075": 143, "q08380": 143, "q08am6": 143, "q12809": 143, "q12884": 143, "q13061": 143, "q13114": 143, "q13275": 143, "q13445": 143, "q13520": 143, "q13740": 143, "q13822": 143, "q14123": 143, "q14126": 143, "q14213": 143, "q14524": 143, "q14541": 143, "q14563": 143, "q14773": 143, "q14956": 143, "q14982": 143, "q14994": 143, "q14995": 143, "q15628": 143, "q15758": 143, "q15768": 143, "q15842": 143, "q15848": 143, "q16342": 143, "q16363": 143, "q16572": 143, "q16625": 143, "q16853": 143, "q19t08": 143, "q29983": 143, "q2tal6": 143, "q30201": 143, "q401n2": 143, "q496h8": 143, "q4vcs5": 143, "q4w5p6": 143, "q5dx21": 143, "q5tat6": 143, "q5vu97": 143, "q5vy80": 143, "q5zpr3": 143, "q6nyc1": 143, "q6piz9": 143, "q6q4g3": 143, "q6rw13": 143, "q6uw88": 143, "q6uwv6": 143, "q6uxb3": 143, "q6uxi9": 143, "q7l0j3": 143, "q7z7d3": 143, "q86uf1": 143, "q86uk0": 143, "q8iu54": 143, "q8iu80": 143, "q8iuk5": 143, "q8iwv2": 143, "q8izv2": 143, "q8izy2": 143, "q8n126": 143, "q8n2g4": 143, "q8ncm2": 143, "q8ncs7": 143, "q8nec5": 143, "q8nfp4": 143, "q8nfy4": 143, "q8nfz3": 143, "q8ng11": 143, "q8taz6": 143, "q8tcy5": 143, "q8td07": 143, "q8tdm5": 143, "q8wum9": 143, "q8wwa0": 143, "q8wwx8": 143, "q8wxs5": 143, "q92570": 143, "q92673": 143, "q92753": 143, "q92913": 143, "q92954": 143, "q96ap7": 143, "q96b86": 143, "q96dz9": 143, "q96jb6": 143, "q96jk4": 143, "q96jq0": 143, "q96l42": 143, "q96pb7": 143, "q96qt4": 143, "q96s97": 143, "q96sn7": [143, 1247], "q99075": 143, "q99523": 143, "q99712": 143, "q99784": 143, "q9bqq7": 143, "q9brk0": 143, "q9buf7": 143, "q9bx67": 143, "q9bxj0": 143, "q9by67": 143, "q9bye2": 143, "q9bzm4": 143, "q9gzm7": 143, "q9h0r3": 143, "q9h221": 143, "q9h222": 143, "q9h4b8": 143, "q9h7v2": 143, "q9np59": 143, "q9nqs3": 143, "q9nr61": 143, "q9nr82": 143, "q9nrq2": 143, "q9nsa2": 143, "q9ny72": 143, "q9ny84": 143, "q9nyj7": 143, "q9nyz4": 143, "q9nz08": 143, "q9nz53": 143, "q9nzq7": 143, "q9nzv8": 143, "q9p0k1": 143, "q9p0l9": 143, "q9p232": 143, "q9p2k9": 143, "q9p2u7": 143, "q9ubh0": 143, "q9ubn1": 143, "q9ubx5": 143, "q9uef7": 143, "q9uf02": 143, "q9ugm3": 143, "q9uhc9": 143, "q9uir0": 143, "q9ujz1": 143, "q9ukr5": 143, "q9ukv5": 143, "q9uky0": 143, "q9ul54": 143, "q9ulb1": 143, "q9uld8": 143, "q9ulh0": 143, "q9ult6": 143, "q9umd9": 143, "q9umf0": 143, "q9ung2": 143, "q9upu3": 143, "q9uq05": 143, "q9uqd0": 143, "q9y219": 143, "q9y286": 143, "q9y2j0": 143, "q9y3r0": 143, "q9y466": 143, "q9y4c0": 143, "q9y5r2": 143, "q9y5y6": 143, "q9y5y9": 143, "q9y698": 143, "q9y6y9": 143, "higher": [143, 145, 721, 722, 724, 725, 726, 727, 728, 1117, 1246], "df_by_sourc": 145, "df_with_refer": 145, "df_column": 145, "df_dtype": 145, "allow_loop": [145, 965, 1247], "compon": [145, 150, 228, 234, 778, 909, 915, 918, 928, 974, 1067, 1078, 1080, 1247, 1250], "when": [145, 1066, 1067, 1078, 1080, 1229, 1233, 1234, 1235, 1236, 1237, 1238, 1241, 1243, 1244, 1246, 1247], "restrict": [145, 179, 182, 294, 356, 442, 447, 452, 665, 666, 918, 1091, 1094, 1100, 1101, 1104, 1105, 1247], "activated_bi": 145, "entitylist": 145, "add_interact": 145, "readi": [145, 909, 915, 918, 928, 1247], "stand": [145, 1246], "usual": [145, 1247], "add_nod": 145, "nodes_by_label": 145, "noth": [145, 974, 1008, 1040], "collect_complex_identifi": 145, "complex_identifi": 145, "collect_complex_label": 145, "complex_label": 145, "collect_complex": 145, "collect_curation_effort": 145, "collect_data_model": 145, "collect_dataset": 145, "collect_degrees_direct": 145, "degrees_direct": 145, "collect_degrees_directed_in": 145, "degrees_directed_in": 145, "collect_degrees_directed_out": 145, "degrees_directed_out": 145, "collect_degrees_neg": 145, "degrees_neg": 145, "collect_degrees_negative_in": 145, "degrees_negative_in": 145, "collect_degrees_negative_out": 145, "degrees_negative_out": 145, "collect_degrees_non_direct": 145, "degrees_non_direct": 145, "collect_degrees_posit": 145, "degrees_posit": 145, "collect_degrees_positive_in": 145, "degrees_positive_in": 145, "collect_degrees_positive_out": 145, "degrees_positive_out": 145, "collect_degrees_sign": 145, "degrees_sign": 145, "collect_degrees_signed_in": 145, "degrees_signed_in": 145, "collect_degrees_signed_out": 145, "degrees_signed_out": 145, "collect_degrees_undirect": 145, "degrees_undirect": 145, "collect_ent": 145, "collect_evid": 145, "collect_identifi": 145, "collect_interaction_typ": 145, "collect_interact": [145, 1008], "collect_interactions_0": 145, "interactions_0": 145, "collect_interactions_direct": 145, "interactions_direct": 145, "collect_interactions_mutu": 145, "interactions_mutu": 145, "collect_interactions_neg": 145, "interactions_neg": 145, "collect_interactions_non_direct": 145, "interactions_non_direct": 145, "collect_interactions_non_directed_0": 145, "interactions_non_directed_0": 145, "collect_interactions_posit": 145, "interactions_posit": 145, "collect_interactions_sign": 145, "interactions_sign": 145, "collect_interactions_undirect": 145, "interactions_undirect": 145, "collect_interactions_undirected_0": 145, "interactions_undirected_0": 145, "collect_label": 145, "collect_lncrna_identifi": 145, "lncrna_identifi": 145, "collect_lncrna_label": 145, "lncrna_label": 145, "collect_lncrna": 145, "collect_mirna_identifi": 145, "mirna_identifi": 145, "collect_mirna_label": 145, "mirna_label": 145, "collect_mirna": 145, "collect_protein_identifi": 145, "protein_identifi": 145, "collect_protein_label": 145, "protein_label": 145, "collect_protein": 145, "collect_refer": 145, "collect_resource_nam": 145, "collect_resource_names_via": 145, "resource_names_via": 145, "collect_resourc": 145, "collect_resources_via": 145, "resources_via": 145, "collect_small_molecule_identifi": 145, "small_molecule_identifi": 145, "collect_small_molecule_label": 145, "small_molecule_label": 145, "collect_small_molecul": 145, "collectri": [145, 1246, 1247], "immut": 145, "constructor": [145, 1229, 1241, 1244], "count_activated_bi": 145, "pleas": [145, 347, 348, 353, 498, 517, 758, 759, 1058, 1246, 1247], "count_activ": 145, "bytes_or_buff": 145, "encod": [145, 267, 1036, 1037, 1247, 1250], "error": [145, 721, 722, 724, 725, 726, 727, 728, 909, 1246, 1250], "expos": [145, 1115, 1246], "buffer": [145, 267], "decod": 145, "handler": [145, 1039, 1040, 1041, 1042, 1043, 1044, 1045, 1046, 1047, 1048, 1050, 1051], "__str__": 145, "repr": 145, "sy": 145, "getdefaultencod": 145, "strict": [145, 745, 782, 893, 894, 1067, 1078, 1079, 1080, 1098, 1247], "count_complex_identifiers_by_data_model": 145, "count_complex_identifiers_by_interaction_typ": 145, "count_complex_identifiers_by_interaction_type_and_data_model": 145, "count_complex_identifiers_by_interaction_type_and_data_model_and_resourc": 145, "count_complex_identifiers_by_refer": 145, "count_complex_identifiers_by_resourc": 145, "count_complex_labels_by_data_model": 145, "count_complex_labels_by_interaction_typ": 145, "count_complex_labels_by_interaction_type_and_data_model": 145, "count_complex_labels_by_interaction_type_and_data_model_and_resourc": 145, "count_complex_labels_by_refer": 145, "count_complex_labels_by_resourc": 145, "count_complexes_by_data_model": 145, "count_complexes_by_interaction_typ": 145, "count_complexes_by_interaction_type_and_data_model": 145, "count_complexes_by_interaction_type_and_data_model_and_resourc": 145, "count_complexes_by_refer": 145, "count_complexes_by_resourc": 145, "count_curation_effort": 145, "count_curation_effort_by_data_model": 145, "count_curation_effort_by_interaction_typ": 145, "count_curation_effort_by_interaction_type_and_data_model": 145, "count_curation_effort_by_interaction_type_and_data_model_and_resourc": 145, "count_curation_effort_by_refer": 145, "count_curation_effort_by_resourc": 145, "count_data_models_by_data_model": 145, "count_data_models_by_interaction_typ": 145, "count_data_models_by_interaction_type_and_data_model": 145, "count_data_models_by_interaction_type_and_data_model_and_resourc": 145, "count_data_models_by_refer": 145, "count_data_models_by_resourc": 145, "count_dataset": 145, "count_datasets_by_data_model": 145, "count_datasets_by_interaction_typ": 145, "count_datasets_by_interaction_type_and_data_model": 145, "count_datasets_by_interaction_type_and_data_model_and_resourc": 145, "count_datasets_by_refer": 145, "count_datasets_by_resourc": 145, "count_degrees_directed_by_data_model": 145, "count_degrees_directed_by_interaction_typ": 145, "count_degrees_directed_by_interaction_type_and_data_model": 145, "count_degrees_directed_by_interaction_type_and_data_model_and_resourc": 145, "count_degrees_directed_by_refer": 145, "count_degrees_directed_by_resourc": 145, "count_degrees_directed_in_by_data_model": 145, "count_degrees_directed_in_by_interaction_typ": 145, "count_degrees_directed_in_by_interaction_type_and_data_model": 145, "count_degrees_directed_in_by_interaction_type_and_data_model_and_resourc": 145, "count_degrees_directed_in_by_refer": 145, "count_degrees_directed_in_by_resourc": 145, "count_degrees_directed_out_by_data_model": 145, "count_degrees_directed_out_by_interaction_typ": 145, "count_degrees_directed_out_by_interaction_type_and_data_model": 145, "count_degrees_directed_out_by_interaction_type_and_data_model_and_resourc": 145, "count_degrees_directed_out_by_refer": 145, "count_degrees_directed_out_by_resourc": 145, "count_degrees_negative_by_data_model": 145, "count_degrees_negative_by_interaction_typ": 145, "count_degrees_negative_by_interaction_type_and_data_model": 145, "count_degrees_negative_by_interaction_type_and_data_model_and_resourc": 145, "count_degrees_negative_by_refer": 145, "count_degrees_negative_by_resourc": 145, "count_degrees_negative_in_by_data_model": 145, "count_degrees_negative_in_by_interaction_typ": 145, "count_degrees_negative_in_by_interaction_type_and_data_model": 145, "count_degrees_negative_in_by_interaction_type_and_data_model_and_resourc": 145, "count_degrees_negative_in_by_refer": 145, "count_degrees_negative_in_by_resourc": 145, "count_degrees_negative_out_by_data_model": 145, "count_degrees_negative_out_by_interaction_typ": 145, "count_degrees_negative_out_by_interaction_type_and_data_model": 145, "count_degrees_negative_out_by_interaction_type_and_data_model_and_resourc": 145, "count_degrees_negative_out_by_refer": 145, "count_degrees_negative_out_by_resourc": 145, "count_degrees_non_directed_by_data_model": 145, "count_degrees_non_directed_by_interaction_typ": 145, "count_degrees_non_directed_by_interaction_type_and_data_model": 145, "count_degrees_non_directed_by_interaction_type_and_data_model_and_resourc": 145, "count_degrees_non_directed_by_refer": 145, "count_degrees_non_directed_by_resourc": 145, "count_degrees_positive_by_data_model": 145, "count_degrees_positive_by_interaction_typ": 145, "count_degrees_positive_by_interaction_type_and_data_model": 145, "count_degrees_positive_by_interaction_type_and_data_model_and_resourc": 145, "count_degrees_positive_by_refer": 145, "count_degrees_positive_by_resourc": 145, "count_degrees_positive_in_by_data_model": 145, "count_degrees_positive_in_by_interaction_typ": 145, "count_degrees_positive_in_by_interaction_type_and_data_model": 145, "count_degrees_positive_in_by_interaction_type_and_data_model_and_resourc": 145, "count_degrees_positive_in_by_refer": 145, "count_degrees_positive_in_by_resourc": 145, "count_degrees_positive_out_by_data_model": 145, "count_degrees_positive_out_by_interaction_typ": 145, "count_degrees_positive_out_by_interaction_type_and_data_model": 145, "count_degrees_positive_out_by_interaction_type_and_data_model_and_resourc": 145, "count_degrees_positive_out_by_refer": 145, "count_degrees_positive_out_by_resourc": 145, "count_degrees_signed_by_data_model": 145, "count_degrees_signed_by_interaction_typ": 145, "count_degrees_signed_by_interaction_type_and_data_model": 145, "count_degrees_signed_by_interaction_type_and_data_model_and_resourc": 145, "count_degrees_signed_by_refer": 145, "count_degrees_signed_by_resourc": 145, "count_degrees_signed_in_by_data_model": 145, "count_degrees_signed_in_by_interaction_typ": 145, "count_degrees_signed_in_by_interaction_type_and_data_model": 145, "count_degrees_signed_in_by_interaction_type_and_data_model_and_resourc": 145, "count_degrees_signed_in_by_refer": 145, "count_degrees_signed_in_by_resourc": 145, "count_degrees_signed_out_by_data_model": 145, "count_degrees_signed_out_by_interaction_typ": 145, "count_degrees_signed_out_by_interaction_type_and_data_model": 145, "count_degrees_signed_out_by_interaction_type_and_data_model_and_resourc": 145, "count_degrees_signed_out_by_refer": 145, "count_degrees_signed_out_by_resourc": 145, "count_degrees_undirected_by_data_model": 145, "count_degrees_undirected_by_interaction_typ": 145, "count_degrees_undirected_by_interaction_type_and_data_model": 145, "count_degrees_undirected_by_interaction_type_and_data_model_and_resourc": 145, "count_degrees_undirected_by_refer": 145, "count_degrees_undirected_by_resourc": 145, "count_entities_by_data_model": 145, "count_entities_by_interaction_typ": 145, "count_entities_by_interaction_type_and_data_model": 145, "count_entities_by_interaction_type_and_data_model_and_resourc": 145, "count_entities_by_refer": 145, "count_entities_by_resourc": 145, "count_evid": 145, "count_evidences_by_data_model": 145, "count_evidences_by_interaction_typ": 145, "count_evidences_by_interaction_type_and_data_model": 145, "count_evidences_by_interaction_type_and_data_model_and_resourc": 145, "count_evidences_by_refer": 145, "count_evidences_by_resourc": 145, "count_identifiers_by_data_model": 145, "count_identifiers_by_interaction_typ": 145, "count_identifiers_by_interaction_type_and_data_model": 145, "count_identifiers_by_interaction_type_and_data_model_and_resourc": 145, "count_identifiers_by_refer": 145, "count_identifiers_by_resourc": 145, "count_interaction_types_by_data_model": 145, "count_interaction_types_by_interaction_typ": 145, "count_interaction_types_by_interaction_type_and_data_model": 145, "count_interaction_types_by_interaction_type_and_data_model_and_resourc": 145, "count_interaction_types_by_refer": 145, "count_interaction_types_by_resourc": 145, "count_interactions_0_by_data_model": 145, "count_interactions_0_by_interaction_typ": 145, "count_interactions_0_by_interaction_type_and_data_model": 145, "count_interactions_0_by_interaction_type_and_data_model_and_resourc": 145, "count_interactions_0_by_refer": 145, "count_interactions_0_by_resourc": 145, "count_interactions_by_data_model": 145, "count_interactions_by_interaction_typ": [145, 1247], "count_interactions_by_interaction_type_and_data_model": 145, "count_interactions_by_interaction_type_and_data_model_and_resourc": 145, "count_interactions_by_refer": 145, "count_interactions_by_resourc": 145, "count_interactions_directed_by_data_model": 145, "count_interactions_directed_by_interaction_typ": 145, "count_interactions_directed_by_interaction_type_and_data_model": 145, "count_interactions_directed_by_interaction_type_and_data_model_and_resourc": 145, "count_interactions_directed_by_refer": 145, "count_interactions_directed_by_resourc": 145, "count_interactions_mutual_by_data_model": 145, "count_interactions_mutual_by_interaction_typ": 145, "count_interactions_mutual_by_interaction_type_and_data_model": 145, "count_interactions_mutual_by_interaction_type_and_data_model_and_resourc": 145, "count_interactions_mutual_by_refer": 145, "count_interactions_mutual_by_resourc": 145, "count_interactions_negative_by_data_model": 145, "count_interactions_negative_by_interaction_typ": 145, "count_interactions_negative_by_interaction_type_and_data_model": 145, "count_interactions_negative_by_interaction_type_and_data_model_and_resourc": 145, "count_interactions_negative_by_refer": 145, "count_interactions_negative_by_resourc": 145, "count_interactions_non_directed_0": 145, "count_interactions_non_directed_0_by_data_model": 145, "count_interactions_non_directed_0_by_interaction_typ": 145, "count_interactions_non_directed_0_by_interaction_type_and_data_model": 145, "count_interactions_non_directed_0_by_interaction_type_and_data_model_and_resourc": 145, "count_interactions_non_directed_0_by_refer": 145, "count_interactions_non_directed_0_by_resourc": 145, "count_interactions_non_directed_by_data_model": 145, "count_interactions_non_directed_by_interaction_typ": 145, "count_interactions_non_directed_by_interaction_type_and_data_model": 145, "count_interactions_non_directed_by_interaction_type_and_data_model_and_resourc": 145, "count_interactions_non_directed_by_refer": 145, "count_interactions_non_directed_by_resourc": 145, "count_interactions_positive_by_data_model": 145, "count_interactions_positive_by_interaction_typ": 145, "count_interactions_positive_by_interaction_type_and_data_model": 145, "count_interactions_positive_by_interaction_type_and_data_model_and_resourc": 145, "count_interactions_positive_by_refer": 145, "count_interactions_positive_by_resourc": 145, "count_interactions_signed_by_data_model": 145, "count_interactions_signed_by_interaction_typ": 145, "count_interactions_signed_by_interaction_type_and_data_model": 145, "count_interactions_signed_by_interaction_type_and_data_model_and_resourc": 145, "count_interactions_signed_by_refer": 145, "count_interactions_signed_by_resourc": 145, "count_interactions_undirected_0": 145, "count_interactions_undirected_0_by_data_model": 145, "count_interactions_undirected_0_by_interaction_typ": 145, "count_interactions_undirected_0_by_interaction_type_and_data_model": 145, "count_interactions_undirected_0_by_interaction_type_and_data_model_and_resourc": 145, "count_interactions_undirected_0_by_refer": 145, "count_interactions_undirected_0_by_resourc": 145, "count_interactions_undirected_by_data_model": 145, "count_interactions_undirected_by_interaction_typ": 145, "count_interactions_undirected_by_interaction_type_and_data_model": 145, "count_interactions_undirected_by_interaction_type_and_data_model_and_resourc": 145, "count_interactions_undirected_by_refer": 145, "count_interactions_undirected_by_resourc": 145, "count_labels_by_data_model": 145, "count_labels_by_interaction_typ": 145, "count_labels_by_interaction_type_and_data_model": 145, "count_labels_by_interaction_type_and_data_model_and_resourc": 145, "count_labels_by_refer": 145, "count_labels_by_resourc": 145, "count_lncrna_identifiers_by_data_model": 145, "count_lncrna_identifiers_by_interaction_typ": 145, "count_lncrna_identifiers_by_interaction_type_and_data_model": 145, "count_lncrna_identifiers_by_interaction_type_and_data_model_and_resourc": 145, "count_lncrna_identifiers_by_refer": 145, "count_lncrna_identifiers_by_resourc": 145, "count_lncrna_labels_by_data_model": 145, "count_lncrna_labels_by_interaction_typ": 145, "count_lncrna_labels_by_interaction_type_and_data_model": 145, "count_lncrna_labels_by_interaction_type_and_data_model_and_resourc": 145, "count_lncrna_labels_by_refer": 145, "count_lncrna_labels_by_resourc": 145, "count_lncrnas_by_data_model": 145, "count_lncrnas_by_interaction_typ": 145, "count_lncrnas_by_interaction_type_and_data_model": 145, "count_lncrnas_by_interaction_type_and_data_model_and_resourc": 145, "count_lncrnas_by_refer": 145, "count_lncrnas_by_resourc": 145, "count_mirna_identifiers_by_data_model": 145, "count_mirna_identifiers_by_interaction_typ": 145, "count_mirna_identifiers_by_interaction_type_and_data_model": 145, "count_mirna_identifiers_by_interaction_type_and_data_model_and_resourc": 145, "count_mirna_identifiers_by_refer": 145, "count_mirna_identifiers_by_resourc": 145, "count_mirna_labels_by_data_model": 145, "count_mirna_labels_by_interaction_typ": 145, "count_mirna_labels_by_interaction_type_and_data_model": 145, "count_mirna_labels_by_interaction_type_and_data_model_and_resourc": 145, "count_mirna_labels_by_refer": 145, "count_mirna_labels_by_resourc": 145, "count_mirnas_by_data_model": 145, "count_mirnas_by_interaction_typ": 145, "count_mirnas_by_interaction_type_and_data_model": 145, "count_mirnas_by_interaction_type_and_data_model_and_resourc": 145, "count_mirnas_by_refer": 145, "count_mirnas_by_resourc": 145, "count_partn": 145, "count_post_transcriptionally_activated_bi": 145, "count_post_transcriptionally_activ": 145, "count_post_transcriptionally_regulated_bi": 145, "count_post_transcriptionally_regul": 145, "count_post_transcriptionally_suppressed_bi": 145, "count_post_transcriptionally_suppress": 145, "count_post_translationally_activated_bi": 145, "count_post_translationally_activ": 145, "count_post_translationally_regulated_bi": 145, "count_post_translationally_regul": 145, "count_post_translationally_suppressed_bi": 145, "count_post_translationally_suppress": 145, "count_protein_identifiers_by_data_model": 145, "count_protein_identifiers_by_interaction_typ": 145, "count_protein_identifiers_by_interaction_type_and_data_model": 145, "count_protein_identifiers_by_interaction_type_and_data_model_and_resourc": 145, "count_protein_identifiers_by_refer": 145, "count_protein_identifiers_by_resourc": 145, "count_protein_labels_by_data_model": 145, "count_protein_labels_by_interaction_typ": 145, "count_protein_labels_by_interaction_type_and_data_model": 145, "count_protein_labels_by_interaction_type_and_data_model_and_resourc": 145, "count_protein_labels_by_refer": 145, "count_protein_labels_by_resourc": 145, "count_proteins_by_data_model": 145, "count_proteins_by_interaction_typ": 145, "count_proteins_by_interaction_type_and_data_model": 145, "count_proteins_by_interaction_type_and_data_model_and_resourc": 145, "count_proteins_by_refer": 145, "count_proteins_by_resourc": 145, "count_references_by_data_model": 145, "count_references_by_interaction_typ": 145, "count_references_by_interaction_type_and_data_model": 145, "count_references_by_interaction_type_and_data_model_and_resourc": 145, "count_references_by_refer": 145, "count_references_by_resourc": 145, "count_regulated_bi": 145, "count_regul": 145, "count_resource_names_by_data_model": 145, "count_resource_names_by_interaction_typ": 145, "count_resource_names_by_interaction_type_and_data_model": 145, "count_resource_names_by_interaction_type_and_data_model_and_resourc": 145, "count_resource_names_by_refer": 145, "count_resource_names_by_resourc": 145, "count_resource_names_via_by_data_model": 145, "count_resource_names_via_by_interaction_typ": 145, "count_resource_names_via_by_interaction_type_and_data_model": 145, "count_resource_names_via_by_interaction_type_and_data_model_and_resourc": 145, "count_resource_names_via_by_refer": 145, "count_resource_names_via_by_resourc": 145, "count_resources_by_data_model": 145, "count_resources_by_interaction_typ": 145, "count_resources_by_interaction_type_and_data_model": 145, "count_resources_by_interaction_type_and_data_model_and_resourc": 145, "count_resources_by_refer": 145, "count_resources_by_resourc": 145, "count_resources_via_by_data_model": 145, "count_resources_via_by_interaction_typ": 145, "count_resources_via_by_interaction_type_and_data_model": 145, "count_resources_via_by_interaction_type_and_data_model_and_resourc": 145, "count_resources_via_by_refer": 145, "count_resources_via_by_resourc": 145, "count_small_molecule_identifiers_by_data_model": 145, "count_small_molecule_identifiers_by_interaction_typ": 145, "count_small_molecule_identifiers_by_interaction_type_and_data_model": 145, "count_small_molecule_identifiers_by_interaction_type_and_data_model_and_resourc": 145, "count_small_molecule_identifiers_by_refer": 145, "count_small_molecule_identifiers_by_resourc": 145, "count_small_molecule_labels_by_data_model": 145, "count_small_molecule_labels_by_interaction_typ": 145, "count_small_molecule_labels_by_interaction_type_and_data_model": 145, "count_small_molecule_labels_by_interaction_type_and_data_model_and_resourc": 145, "count_small_molecule_labels_by_refer": 145, "count_small_molecule_labels_by_resourc": 145, "count_small_molecules_by_data_model": 145, "count_small_molecules_by_interaction_typ": 145, "count_small_molecules_by_interaction_type_and_data_model": 145, "count_small_molecules_by_interaction_type_and_data_model_and_resourc": 145, "count_small_molecules_by_refer": 145, "count_small_molecules_by_resourc": 145, "count_suppressed_bi": 145, "count_suppress": 145, "count_transcriptionally_activated_bi": 145, "count_transcriptionally_activ": 145, "count_transcriptionally_regulated_bi": 145, "count_transcriptionally_regul": 145, "count_transcriptionally_suppressed_bi": 145, "count_transcriptionally_suppress": 145, "curation_effort_by_data_model": 145, "curation_effort_by_interaction_typ": 145, "curation_effort_by_interaction_type_and_data_model": 145, "curation_effort_by_interaction_type_and_data_model_and_resourc": 145, "curation_effort_by_refer": 145, "curation_effort_by_resourc": 145, "direction_consist": 145, "statist": [145, 1247], "total_direct": 145, "shared_direct": 145, "overlap": [145, 1008, 1233, 1234, 1235, 1236, 1237, 1238, 1247], "consistent_edg": 145, "inconsistent_edg": 145, "inconsist": 145, "total_consist": 145, "sum": 145, "total_inconsist": 145, "entity_by_id": 145, "entity_by_label": 145, "evidences_by_data_model": 145, "evidences_by_interaction_typ": 145, "evidences_by_interaction_type_and_data_model": 145, "evidences_by_interaction_type_and_data_model_and_resourc": 145, "evidences_by_refer": 145, "evidences_by_resourc": 145, "extra_direct": [145, 1008], "use_laudanna": 145, "use_str": 145, "directionextra": 145, "curat": [145, 204, 270, 302, 344, 346, 347, 348, 350, 352, 353, 371, 501, 502, 627, 637, 639, 641, 654, 656, 657, 744, 746, 748, 749, 1015, 1016, 1250], "give": [145, 960, 967, 971, 978, 1053, 1112, 1115, 1124, 1247], "suffici": [145, 1018], "find_path": 145, "end": [145, 366, 553, 554, 555, 707, 717, 975, 979, 1067, 1078, 1080, 1247], "maxlen": [145, 1177, 1199], "minlen": 145, "silent": [145, 1036, 1112, 1115, 1124], "find": [145, 654, 1067, 1078, 1089, 1096, 1112, 1246, 1247], "motif": [145, 340, 517, 594, 595, 596, 863, 973, 980, 1140, 1247], "length": [145, 707, 713, 909, 915, 918, 928, 1163, 1247], "subnetwork": [145, 858], "opposit": [145, 1067, 1247], "maximum": [145, 252], "step": [145, 443, 448, 453, 1008, 1048, 1053, 1067, 1247], "longest": 145, "minimum": [145, 854, 857, 858], "indic": [145, 252, 858, 1036, 1058, 1233, 1234, 1235, 1236, 1237, 1238, 1241, 1243, 1244, 1247], "progress": [145, 1036, 1115], "bar": [145, 1053, 1115], "shorter": 145, "last": [145, 999, 1067, 1078, 1087, 1089, 1091, 1094, 1096, 1105, 1115, 1247], "longer": [145, 346, 352, 1066, 1067, 1068, 1247], "remain": [145, 1067, 1247], "motiv": 145, "let": [145, 1040, 1247], "sai": [145, 1247], "estrogen": [145, 1247], "esr1": [145, 1247], "transcription": 145, "translation": 145, "n": [145, 441, 442, 443, 446, 447, 448, 451, 452, 453, 665, 666, 861, 1091, 1094, 1100, 1101, 1104, 1105, 1247], "post_transl": [145, 965, 1008, 1247], "interest": [145, 442, 447, 452, 758, 759, 972, 1245, 1246, 1248], "feedback": [145, 517], "from_igraph": 145, "igraph": [145, 1061, 1064, 1226, 1229, 1241, 1243, 1244, 1245, 1246, 1249], "graph": [145, 411, 1060, 1061, 1064, 1225, 1226, 1229, 1232, 1239, 1241, 1243, 1244, 1247, 1249], "from_pickl": 145, "pickl": [145, 472, 881, 890, 1066, 1070, 1245, 1246], "get_curation_effort": 145, "get_evid": 145, "get_organ": 145, "htp_interact": 145, "threshold": [145, 252, 665, 666, 853, 1091, 1094, 1100, 1101, 1104, 1105, 1247], "50": [145, 1024, 1247], "ignore_direct": 145, "high": [145, 213, 501, 502, 958, 992, 1087, 1094, 1100, 1101, 1104, 1105, 1247], "throughput": [145, 184, 185, 292, 427, 428, 734, 992, 1015, 1247], "studi": [145, 992, 1246, 1247], "htp_refer": 145, "cite": [145, 184, 185], "init_network": [145, 1018, 1247], "reread": 145, "redownload": 145, "keep_raw": 145, "top_cal": 145, "cache_fil": 145, "first_n": 145, "among": [145, 955, 1008, 1067, 1078, 1124, 1247, 1250], "recurs": 145, "after": [145, 1068, 1115, 1124, 1247, 1250], "few": [145, 815, 1246, 1247, 1249], "interaction_by_id": 145, "similarli": [145, 1247], "interaction_by_label": 145, "label_a": 145, "label_b": 145, "load_from_pickl": 145, "load_resourc": [145, 1039, 1040, 1041, 1042, 1043, 1044, 1045, 1046, 1047, 1048, 1050, 1051, 1247], "clean": [145, 812, 1108, 1137, 1247], "attach": [145, 1036, 1233, 1234, 1235, 1236, 1237, 1238], "input_format": [145, 1011, 1012, 1013, 1014, 1015, 1016, 1017, 1018, 1066, 1067, 1078, 1080, 1246, 1247], "networkinput": [145, 1008, 1011, 1012, 1013, 1014, 1015, 1016, 1017, 1018, 1247], "download": [145, 179, 182, 184, 185, 190, 192, 193, 199, 201, 204, 209, 212, 213, 228, 244, 277, 296, 308, 309, 318, 324, 326, 331, 366, 403, 405, 421, 424, 432, 460, 465, 467, 472, 482, 501, 502, 517, 531, 532, 533, 534, 552, 564, 577, 584, 585, 611, 629, 648, 649, 650, 669, 674, 679, 680, 711, 714, 718, 732, 734, 745, 746, 749, 752, 753, 761, 787, 791, 813, 815, 816, 827, 845, 854, 857, 858, 859, 861, 873, 878, 879, 890, 891, 892, 894, 895, 912, 945, 947, 971, 994, 1036, 1040, 1041, 1047, 1048, 1066, 1067, 1108, 1112, 1137, 1245, 1246, 1249], "moment": [145, 1247], "clean_graph": 145, "cach": [145, 193, 384, 472, 516, 517, 649, 714, 718, 746, 748, 749, 750, 781, 791, 813, 895, 1036, 1039, 1040, 1041, 1042, 1043, 1044, 1047, 1048, 1066, 1108, 1137, 1245, 1246], "bypass": [145, 909, 915, 918, 928], "omit": [145, 1087, 1089, 1091, 1094, 1096, 1105, 1115], "similar": [145, 665, 666, 707, 1030, 1091, 1094, 1100, 1101, 1104, 1105, 1161, 1246, 1247, 1250], "column": [145, 181, 182, 201, 267, 306, 443, 448, 453, 666, 775, 861, 1087, 1089, 1091, 1094, 1096, 1100, 1105, 1246, 1247, 1250], "dtype": 145, "mirna_target": [145, 1008, 1247], "mrna": [145, 386, 387, 1249, 1250], "numof_interactions_per_refer": 145, "counter": 145, "organisms_check": 145, "remove_mismatch": 145, "remove_nonspecif": 145, "scan": [145, 1247], "too": [145, 302, 1247], "discrep": 145, "zero": [145, 845, 1236, 1237], "return_interact": 145, "post_transcriptionally_activated_bi": 145, "post_transcriptionally_activ": 145, "post_transcriptionally_regulated_bi": 145, "post_transcriptionally_regul": 145, "post_transcriptionally_suppressed_bi": 145, "post_transcriptionally_suppress": 145, "post_translationally_activated_bi": 145, "post_translationally_activ": 145, "post_translationally_regulated_bi": 145, "post_translationally_regul": 145, "post_translationally_suppressed_bi": 145, "post_translationally_suppress": 145, "random_interact": 145, "pick": [145, 1067, 1079], "random": [145, 1067, 1079, 1115, 1247], "regulated_bi": 145, "remove_interact": 145, "remove_nod": 145, "leav": 145, "remove_zero_degre": 145, "reset": [145, 1067, 1068], "save_to_pickl": [145, 1247], "save": [145, 463, 890, 1066, 1245, 1246], "summaries_tab": 145, "outfil": [145, 342, 755], "return_t": 145, "label_typ": 145, "write": [145, 1066, 1112, 1245, 1246], "suppressed_bi": 145, "suppress": [145, 1247], "to_igraph": 145, "original_resourc": 145, "transcriptionally_activated_bi": 145, "transcriptionally_activ": 145, "transcriptionally_regulated_bi": 145, "transcriptionally_regul": 145, "transcriptionally_suppressed_bi": 145, "transcriptionally_suppress": 145, "by_resourc": 147, "by_categori": 147, "percent": [147, 1053], "shared_res_cat": 147, "unique_res_cat": 147, "percent_res_cat": 147, "shared_cat": 147, "unique_cat": 147, "percent_cat": 147, "resource_cat": 147, "cat_resourc": 147, "13": [147, 275, 344, 501, 502, 955, 1245, 1247], "15": [147, 342, 1247], "14": [147, 344, 504, 1008, 1245, 1247], "11": [147, 342, 344, 955, 1245, 1247], "12": [147, 344, 697, 955, 1245, 1247], "use_omnipath": 149, "licens": [150, 151, 204, 498, 505, 1008, 1245, 1249], "page": [150, 209, 366, 1008, 1246, 1247, 1248, 1250], "biomart": [150, 1066, 1070, 1247], "goos": [150, 401, 406, 411, 415], "templat": [150, 1247], "configur": [150, 1247], "copyright": [151, 1247], "point": [151, 654, 707, 794, 909, 918, 928, 1008, 1246, 1247], "loglevel": 152, "session": [152, 1008, 1245, 1246], "keep_in_complex_interact": 157, "expans": [157, 845], "sif": [158, 1247, 1249], "distribut": [158, 1246], "offici": [158, 1247], "websit": [158, 649, 909, 918, 928], "adr_class": 163, "badd": [163, 165, 167, 171], "namedtupl": [163, 164, 165, 166, 167, 252, 253, 313, 314, 315, 355, 427, 428, 829, 830, 831, 832], "child": [164, 171, 1066, 1247], "adrecsadr": 164, "synonym": [165, 167, 170, 448, 453, 479, 674, 778, 892, 974, 1008, 1149, 1247], "drugbank": [165, 170, 313, 315], "pubchem_cid": 165, "mesh": [165, 170], "tdd": [165, 170], "drug_badd": 166, "adr_badd": 166, "adr": [166, 168, 169, 674], "adrecs_class": 167, "meddra": [167, 834, 835, 836], "return_df": [168, 169, 170, 270, 312, 314, 315, 331, 332, 333, 334, 335, 336, 337, 389, 390, 441, 446, 451, 665, 666, 671, 672, 673, 674, 675, 793, 818, 819, 820, 821, 1247], "adrecsterm": 168, "advers": [168, 663, 671, 901, 1247], "reaction": [168, 671, 1008, 1126, 1247, 1250], "adrecsdrugadr": 169, "pd": [169, 270, 331, 332, 333, 334, 335, 336, 337, 390, 446, 448, 451, 453, 666, 671, 672, 673, 674, 675, 794, 818, 819, 820, 821, 1247], "iupac": [170, 778, 1247], "bio": 170, "jsp": [170, 648, 649, 650], "adrecschildpar": 171, "numer": [171, 384, 903, 906, 930, 1161, 1247], "url": [178, 180, 209, 328, 366, 373, 399, 674, 827, 909, 984, 1036, 1049, 1247, 1250], "commonli": 179, "shown": [179, 182, 188, 674, 892, 1247], "biogps_dataset": [179, 181, 182], "profil": [180, 181, 1247], "biogpsdataset": 181, "microarrai": [181, 182, 188, 189, 190, 960, 1066, 1247], "probe": [181, 182, 188, 190, 960, 1066, 1247], "htp_limit": [184, 185], "ltp": [184, 185], "low": [184, 185, 292, 734, 1015], "physic": [185, 854, 857, 858], "multi": [185, 306, 974, 1247, 1249], "target_organ": 187, "10090": [187, 419, 845, 909, 915, 918, 928, 1246, 1247, 1250], "extra_field": 187, "external_gene_nam": 187, "ensembl": [187, 188, 190, 191, 1067, 1070, 1078, 1080, 1087, 1089, 1091, 1094, 1096, 1100, 1101, 1104, 1105, 1246, 1247], "orthologu": [187, 1087, 1089, 1091, 1096], "homologi": [187, 212, 213, 1245, 1247, 1250], "relat": [187, 249, 302, 360, 382, 407, 410, 412, 534, 560, 561, 562, 563, 565, 566, 567, 568, 569, 571, 572, 573, 574, 575, 665, 666, 1060, 1087, 1091, 1094, 1100, 1101, 1104, 1105, 1115, 1246, 1247, 1250], "array_typ": 188, "peptid": [188, 190, 191, 1247], "webpag": [188, 209, 318, 648, 650, 827, 890, 891, 892, 895, 945, 1112, 1247, 1250], "biomart_microarray_typ": 188, "vendor": 190, "minut": [190, 1246, 1247], "affi": [190, 1247], "illumina": 190, "agil": [190, 1247], "codelink": 190, "phalanx": 190, "hsapiens_gene_ensembl": 191, "servic": [191, 366, 411, 668, 669, 778, 913, 972, 1066, 1161, 1246, 1247, 1249], "martview": 191, "repositori": [192, 945, 1249], "bioservic": [192, 194, 197], "individu": [192, 564, 663, 1067, 1078, 1112, 1247], "pars": [192, 442, 443, 447, 448, 452, 453, 711, 723, 1115, 1143, 1247], "enter": 192, "model_id": [193, 197], "integr": [193, 851, 1018, 1245, 1247, 1249], "fetch": [194, 727, 780, 972, 1226, 1247], "smbl": 194, "submiss": 194, "date": [194, 347, 348, 353, 407, 411, 910, 1161, 1247], "author": [194, 596, 758, 759, 1247], "verbos": [195, 519, 1043, 1044, 1247, 1249], "eg": 197, "descript": [197, 775, 979, 1053, 1163, 1188, 1247, 1249], "associ": [197, 277, 673, 675, 764, 765, 857, 1229, 1241, 1243, 1244, 1247], "ma": 199, "ayan": 199, "2005": [199, 496, 1247], "scraper": 202, "cancerdrugs_db": [202, 203], "pubchem": [203, 205, 232, 313, 315, 592, 833, 834, 836, 1247], "world": 204, "describ": [205, 214, 228, 668, 909, 915, 918, 928, 1161], "funciton": 207, "supp_url": 209, "article_url": 209, "supplementari": [209, 375, 376, 377, 378, 587, 774, 775, 787, 827, 944, 950, 958], "materi": [209, 774, 827], "journal": [209, 827, 1112], "articl": [209, 637, 898, 1247], "extend": [211, 212, 213, 214, 1124, 1247], "shellycod": [211, 212, 213, 214], "core": [211, 212, 213, 214, 306, 958, 1246, 1247, 1249], "cellcall_download_al": 212, "incomprehens": [220, 221, 222, 243, 244, 245], "fall": [220, 221, 222, 243, 244, 245], "back": [220, 221, 222, 243, 244, 245, 1067], "fhe": 221, "r": [221, 345, 1036, 1037, 1246, 1247, 1250], "rda": 221, "raw": [221, 273, 553, 680, 745, 774, 794, 845, 913, 1112, 1139, 1140, 1241, 1243, 1244, 1246, 1247], "ligand_receptor": [222, 1008, 1247, 1249], "cofactor": 222, "agonist": 222, "antagonist": 222, "coreceptor": 222, "ligand_loc": 224, "receptor_loc": 224, "rna": [225, 226, 227, 228, 229, 230, 231, 232, 233, 1249], "societi": [225, 226, 227, 228, 229, 230, 231, 232, 233], "preprocess": [229, 232, 277, 296, 482, 553, 555, 649, 745, 746, 748, 749, 750, 753, 761, 878, 879, 890, 909, 1139, 1140, 1246], "cid": [232, 778, 831, 833, 834, 835, 836], "cellinker_complexes_raw": 234, "guess": [234, 1067, 1072], "receptor_class": 236, "peripher": [236, 1247, 1250], "secret": [236, 294, 617, 1036, 1247, 1250], "secreted_class": 236, "integrin": [236, 1247], "add_complex_annot": 241, "deprec": [241, 326, 397, 398, 409], "wrong": [241, 1247], "tcm": [243, 245], "zju": [243, 245], "edu": [243, 245, 505, 641], "cn": [243, 245, 641, 1247], "php": [243, 245, 505, 641, 1036, 1247], "filenam": [244, 1036, 1038, 1115, 1225, 1247], "lr_pair": 244, "gene_info": 244, "gene2ensembl": 244, "immun": 247, "teichlab": 247, "celltypist_wiki": 247, "standard_rel": 249, "pchembl_value_non": 249, "todo": 249, "pchembl": 249, "standard": [249, 371, 1067, 1078, 1080, 1161, 1163, 1205, 1247], "standard_unit": 249, "why": [249, 1247], "data_validity_com": 249, "assai": 250, "document": [251, 1246, 1247, 1248], "convers": [251, 972, 1066, 1245, 1247, 1249], "max_phase_threshold": 252, "phase": 252, "mechan": [253, 863, 1247], "variant": [256, 257, 258, 494, 553, 554, 555, 1246, 1247], "citat": 257, "protein_cod": [260, 261], "collectri_raw": 260, "csv": [263, 268, 347, 348, 353, 774, 775, 1247], "old": [263, 347, 348, 353, 945, 1008, 1053, 1067, 1078, 1080, 1246, 1247], "glom": [264, 265, 366, 669], "spec": [264, 265, 366, 669], "protect": 264, "coalesc": 264, "io": [265, 266, 280, 281, 366], "depth": [265, 809], "read": [266, 267, 268, 366, 587, 588, 589, 590, 596, 714, 723, 774, 840, 1008, 1037, 1040, 1047, 1048, 1066, 1070, 1112, 1161, 1245, 1246, 1249], "col": [267, 1087, 1089, 1091, 1094, 1096, 1105, 1224, 1247], "fileobject": 267, "sep": [267, 1038, 1120], "sep2": 267, "rem": 267, "hdr": 267, "open": [267, 460, 465, 671, 672, 673, 674, 675, 783, 1036, 1037, 1112, 1115, 1246, 1247], "stringio": 267, "subfield": 267, "prefix": [267, 384, 1053, 1115, 1247], "header": [267, 342, 516, 517, 909, 962, 965, 969, 1036, 1038, 1143, 1187, 1247], "assum": [267, 294, 974, 1087, 1089, 1091, 1094, 1096, 1105], "replac": [267, 406, 411, 910, 1036, 1247], "xls_file": 268, "sheet": [268, 373], "use_openpyxl": 268, "cell_rang": 268, "m": [268, 665, 666, 1091, 1094, 1100, 1101, 1104, 1105, 1247], "excel": [268, 1247], "xl": 268, "source_db": 270, "wikipathwai": 270, "reactom": [270, 813, 814, 815, 816, 1115], "target_db": 270, "cross": [270, 357, 479, 534, 1163, 1173, 1194], "propos": 270, "user": [270, 285, 294, 329, 355, 356, 357, 358, 359, 360, 854, 857, 858, 1038, 1112, 1246, 1247], "return_detail": 275, "intact": [275, 292, 825, 1013, 1014, 1067, 1247], "ebi": [275, 668, 669, 904, 1161, 1246], "uk": [275, 904, 1161], "nar": [275, 898, 1247], "oxfordjourn": [275, 1247], "earli": 275, "2014": [275, 497, 504, 945, 1112], "gku975": 275, "pdf": [275, 1224, 1225], "cellular": [277, 1245, 1246], "compart": 277, "score_threshold": [278, 437, 854, 856, 857, 858], "connectomedb2020": [280, 281, 1247], "asrhou": [280, 281], "github": [280, 281, 1246, 1247], "natmi": [280, 281], "passwd": [285, 329, 355, 356, 357, 358, 359, 360, 1038], "credentials_fnam": [285, 355, 356, 357, 358, 359, 360], "cosmic_credenti": 285, "driver": [285, 536], "sanger": 285, "catalogu": 285, "somat": 285, "mutat": [285, 982], "include_unknown_typ": 287, "consensuspathdb": [291, 292], "cpdb_interact": 292, "hprd": [292, 1014, 1247], "biogrid": [292, 1013, 1014, 1247], "phosphopoint": 292, "mint": 292, "bind": [292, 714, 854, 857, 973, 1058, 1247], "from_fil": 294, "requir": [294, 815, 854, 857, 858, 933, 1067, 1115, 1246, 1247], "password": [294, 355, 356, 357, 358, 359, 360, 1112], "_credenti": 294, "directori": [294, 718, 1031, 1032, 1246, 1247, 1249], "unchang": [294, 782, 845, 1060], "runtimeerror": 294, "catalyt": 296, "relation_typ": 302, "diseas": [302, 303, 478, 560, 561, 562, 563, 564, 567, 573, 673, 675, 685, 686, 721, 727, 772], "directevid": 302, "chemical_gen": 302, "chemical_diseas": 302, "disease_pathwai": 302, "chemical_phenotyp": 302, "gene_diseas": 302, "vocabulary_typ": 303, "vocabulari": 303, "chemic": [303, 854, 1161], "anatomi": 303, "phenotyp": [303, 477, 478, 480, 650], "compendium": 305, "experi": [305, 331, 332, 333, 654, 1247], "long": [306, 1067, 1152, 1246, 1247], "matrix": [306, 611, 614, 665, 666, 1094, 1100, 1101, 1104, 1105, 1112, 1247, 1250], "wide": [306, 1247], "action": [312, 314], "chembl": [313, 315, 359, 592, 1161, 1247, 1249], "html": [318, 366, 392, 682, 683, 711, 895, 1112, 1177, 1199, 1247, 1250], "rescu": [319, 945], "interacton": 325, "Will": 326, "soon": [326, 397, 398, 409, 1247], "genesymbol": [326, 428, 468, 588, 1067, 1073, 1074, 1078, 1080, 1172, 1246, 1247, 1250], "core_onli": 328, "direct_onli": 328, "small_scale_onli": 328, "reason": [329, 517, 1246, 1247], "binary_data": [329, 1036], "curl": [329, 1112, 1250], "below": [329, 494, 909, 915, 918, 928, 1246, 1247], "data_origin": 331, "textmin": [331, 336, 337], "knowledg": [331, 334, 335, 654, 774], "jensen": [331, 332, 333, 334, 335, 336, 337], "lab": [331, 332, 333, 334, 335, 336, 337, 505, 584, 585, 945, 947, 1246, 1247], "warn": [331, 336, 337, 1247], "enorm": [331, 336, 337], "ddi": 340, "dmi": 340, "none_valu": 342, "uniprot_a": 342, "uniprot_b": 342, "isoform_a": [342, 978], "isoform_b": [342, 978], "exp_method": 342, "role_a": 342, "role_b": 342, "binding_site_range_a": 342, "binding_site_range_b": 342, "domains_a": 342, "domains_b": 342, "ptm_residue_a": 342, "ptm_residue_b": 342, "ptm_type_mi_a": 342, "ptm_type_mi_b": 342, "ptm_type_a": 342, "ptm_type_b": 342, "19": [342, 1247], "ptm_res_name_a": 342, "ptm_res_name_b": 342, "mutations_a": 342, "mutations_b": 342, "23": [342, 1247], "mutation_effects_a": 342, "mutation_effects_b": 342, "domains_interpro_a": 342, "26": [342, 1247], "domains_interpro_b": 342, "28": [342, 1247], "chipseq": 344, "coexp": 344, "curated_sourc": 344, "chipseq_sourc": 344, "predicted_sourc": 344, "coexp_sourc": 344, "all_sourc": 344, "kegg_pathwai": [344, 346, 352], "packag": [345, 1246, 1247], "complet": [345, 727, 909, 915, 918, 928, 1066, 1153, 1246, 1247, 1249], "only_cur": [346, 347, 348, 350, 352, 353], "confidence_pairwis": [346, 352], "regulon": [346, 352, 1250], "chip": [346, 347, 348, 350, 352, 353], "seq": [346, 347, 348, 350, 352, 353, 979, 980, 982, 1124, 1247], "pwm": [346, 347, 348, 350, 352, 353], "hocomoco": [346, 347, 348, 350, 352, 353], "jaspar": [346, 347, 348, 350, 352, 353], "matric": [346, 347, 348, 350, 352, 353], "gtex": [346, 347, 348, 350, 352, 353, 724, 727], "aracn": [346, 347, 348, 350, 352, 353], "version": [346, 347, 348, 352, 353, 498, 501, 502, 648, 649, 650, 689, 697, 945, 1008, 1153, 1246, 1247, 1249], "2018": [347, 348, 353], "dorothea_interact": [347, 348, 353], "wrapper": [355, 997, 1036, 1053, 1068, 1112, 1247], "xml": [355, 442, 447, 452, 596, 1112, 1115, 1247], "drugbank_drugs_ful": 355, "drugbank_targets_ful": 355, "mail": [355, 356, 357, 358, 359, 360, 1112], "account": [355, 356, 357, 358, 359, 360, 1247], "drugbank_external_ids_ful": 355, "drugbank_properties_ful": 355, "statu": [356, 1036, 1053, 1115, 1247], "pharma_act": [358, 360], "pharmacolog": [358, 360], "target_id_typ": [359, 364, 762, 972, 1066, 1067, 1068, 1069, 1078, 1079, 1080, 1082, 1083, 1247], "ca": [359, 364, 1247], "inchikei": [359, 364, 1247], "inchi": [359, 364, 592, 778, 1161, 1247], "smile": [359, 364, 448, 453, 592, 778, 1161, 1247], "formula": 359, "kegg_compound": 359, "kegg_drug": 359, "pubchem_compound": 359, "pubchem_subst": 359, "chebi": [359, 570, 592, 818, 1247], "pharmgkb": 359, "het": [359, 1247], "login": 359, "credenti": 359, "central": [362, 363, 364, 1008, 1247], "comment": [363, 1247], "retain": 363, "inn": 364, "q": [366, 772], "pagin": [366, 1247], "page_length": 366, "size_param": 366, "page_param": 366, "by_pag": 366, "page_field": 366, "total_field": 366, "totalpag": 366, "record_nam": 366, "append": [366, 1008], "until": [366, 1247, 1248], "per": [366, 857, 858, 1112], "readthedoc": 366, "latest": [366, 467, 1247], "tutori": [366, 1246, 1247], "downlod": 371, "manual": [371, 1015, 1016, 1247], "gold": 371, "init_url": [373, 1036], "s11": [375, 376, 377, 378], "1016": [375, 376, 377, 378, 950], "j": [375, 376, 377, 378, 950], "isci": [375, 376, 377, 378], "2019": [375, 376, 377, 378, 774, 1247], "026": [375, 376, 377, 378], "sheikh": [375, 376, 377, 378], "metadata": [382, 781, 992, 997, 1247], "cache_smal": [384, 781], "metainform": 384, "client": [384, 918, 928, 1161, 1246, 1247], "nlm": [384, 496, 497], "nih": [384, 496, 497, 720, 723, 727, 782], "gov": [384, 496, 497, 723], "book": [384, 1245, 1246], "nbk25499": 384, "chapter4": 384, "interst": 384, "understand": [384, 517, 1247], "strip": [384, 909, 1247], "geoprofil": [384, 1247], "less": [384, 781, 1067, 1078, 1080, 1247], "lower": [384, 414, 415, 416, 417, 650, 665, 666, 759, 781, 836, 1091, 1094, 1100, 1101, 1104, 1105, 1115, 1146, 1247], "digit": 389, "ec": [389, 1247], "bs4": [393, 814, 891, 895], "beautifulsoup": [393, 814, 891], "summari": [394, 1247, 1249], "text": [394, 774, 909, 915, 918, 928, 1247], "module_nam": 395, "method_nam": 395, "go_id": [397, 1247], "slim": 398, "names_onli": 398, "aspect": [398, 400, 401, 402, 406, 407, 408, 410, 411, 412, 414, 415, 416, 417, 955, 958, 1058, 1060, 1061, 1064, 1247, 1250], "f": [398, 400, 401, 402, 406, 407, 408, 410, 411, 412, 414, 415, 416, 417, 997, 1061, 1064], "p": [398, 400, 401, 402, 406, 407, 408, 410, 411, 412, 414, 415, 416, 417, 764, 765, 1061, 1064, 1247], "quickgo": [398, 400, 402, 407, 410, 411, 412, 414, 416], "ancestor": [400, 401, 402, 413, 1058, 1060], "cellular_compon": [400, 401, 402, 406, 407, 408, 410, 411, 412, 414, 415, 416, 417], "molecular_funct": [400, 401, 402, 406, 407, 408, 410, 411, 412, 414, 415, 416, 417], "biological_process": [400, 401, 402, 406, 407, 408, 410, 411, 412, 414, 415, 416, 417], "amigo": [401, 406, 408, 411, 415, 417], "evidence_cod": [403, 405], "goa": [403, 405, 407, 1247], "output": [403, 405, 441, 446, 451, 791, 857, 1161, 1247], "recent": [406, 407, 411, 921, 1067, 1246, 1247], "go_annotations_solr": 406, "mysql": [406, 411, 791, 1247, 1249], "sinc": [406, 411, 1247], "dec": [406, 411], "2016": [406, 411], "unfortun": [406, 411, 1247], "ceas": [406, 411], "flexibl": [406, 411, 1008, 1247], "perform": [406, 411, 516, 517, 671, 672, 673, 674, 675, 909, 915, 918, 928, 1036, 1047, 1048, 1247], "solr": [406, 408, 411, 417], "far": [406, 411], "is_a": 407, "part_of": 407, "go_annotations_goa": 407, "contrari": 407, "super": 407, "slow": [407, 791, 1036, 1247], "now": [408, 596, 1053, 1112, 1247], "implement": [408, 564, 876, 974, 1053, 1067, 1080, 1112, 1229, 1233, 1234, 1235, 1236, 1237, 1238, 1239, 1243, 1244, 1246, 1249, 1250], "ye": [409, 972], "quickgo_download_s": [410, 412], "descend": [410, 411, 412, 413, 1058, 1060], "go_terms_solr": [410, 412], "go_descendants_quickgo": 411, "unabl": 411, "nice": [411, 1247], "desc": 413, "turn": [413, 1040, 1041, 1042], "swap": [413, 1067], "upper": [414, 415, 416, 417, 650, 759], "graph_attr": 421, "vertex_attr": 421, "edge_attr": 421, "endogen": 424, "process_interact": 424, "process_complex": 424, "guid": [424, 1246, 1247], "pharmacologi": [424, 1247], "microbe_taxon": [427, 428], "microbe_ncbi_tax_id": [427, 428], "gut_microbiota_id": [427, 428], "gutmgeneannot": 429, "microbi": 429, "effector": 429, "gut": 430, "microbiota": 430, "supplement": [432, 433], "s3": [432, 433, 861], "2012": [432, 433, 587], "150": [432, 433, 1246, 1247], "1068": [432, 433], "1081": [432, 433], "75": [437, 1247], "only_human": 437, "only_sourc": 437, "only_method": 437, "itert": [440, 445, 450], "head": [441, 442, 443, 446, 447, 448, 451, 452, 453, 1247], "weight": [441, 446, 451, 764, 765, 1163, 1247], "though": [441, 446, 451, 1247, 1250], "guarante": [441, 446, 451, 1247], "meaning": [441, 446, 451], "id_field": [441, 446, 451], "simple_field": [441, 446, 451], "peek": [441, 442, 443, 446, 447, 448, 451, 452, 453, 1247], "schema": [442, 443, 447, 448, 452, 453, 1247], "cover": [442, 447, 452, 918, 1246, 1247], "nearli": [442, 447, 452], "don": [442, 447, 452, 1067, 1078, 1246, 1247, 1248, 1250], "task": [442, 447, 452, 1053], "metabolite_schema": 442, "proteins_schema": [442, 452, 1247], "own": [442, 447, 452, 1247, 1249], "deepli": [442, 447, 452], "nest": [442, 443, 447, 448, 452, 453, 553, 554, 555, 909, 915, 918, 928, 1247], "named_field": [443, 448, 453], "simpl": [443, 448, 453, 909, 915, 918, 928, 1008, 1124, 1246, 1247, 1250], "sequeti": [443, 448, 453], "special": [443, 448, 453, 713, 1008, 1247, 1249], "sub": [443, 448, 453], "expand": [443, 448, 453, 845, 1117, 1119, 1122, 1124, 1126, 1127, 1247], "Be": [443, 448, 453], "care": [443, 448, 453, 1067, 1068, 1078, 1247], "combinatori": [443, 448, 453, 1247], "rown": [443, 448, 453], "35": [443, 448, 453, 1247], "excess": [443, 448, 453], "time": [443, 448, 453, 517, 532, 890, 1008, 1066, 1067, 1068, 1246, 1247], "metabolites_schema": [447, 1247], "block": [448, 453], "hmdb_metabolites_t": 448, "substitu": [448, 453, 1247], "proteins_t": [453, 1247], "hmdb_id": [462, 463], "2d": [462, 463, 1229], "browser": [462, 783, 1247, 1250], "pictur": 463, "svg": 463, "iterpars": [465, 1115], "releas": [467, 1245, 1247], "pointer": [467, 1036, 1037], "refseq": [468, 469, 713, 1067, 1078, 1080, 1089, 1096], "gi": [468, 1067, 1078, 1080, 1089], "partner_rol": 471, "unambigu": [471, 474, 1124, 1247], "use_cach": [472, 473, 474, 475], "plasma": [472, 1247, 1250], "membran": [472, 616, 1247, 1250], "receptom": 472, "intermedi": [472, 714, 1067, 1247], "unmaintain": [474, 1067, 1078, 1080], "probabl": [474, 1042, 1247], "never": [474, 1247], "tree": [479, 1247, 1249], "def": [479, 1247], "xref": [479, 727, 728], "in_vivo": [482, 483, 484], "min_confid": [491, 850, 851], "missens": 494, "uniprotkb": [494, 532, 762, 1247], "swiss": [494, 1247], "prot": [494, 1247], "rual": 496, "16189514": 496, "rolland": [497, 504], "25416956": 497, "unbias": [498, 504, 505, 1247], "interactom": [498, 504, 505, 1247], "iii": [498, 505, 1247], "hi": [498, 504, 505], "unpublish": 498, "condit": [498, 1008, 1247], "carefulli": 498, "baderlab": 498, "lit": [501, 502], "bm": [501, 502], "2013": 501, "ccsb": [501, 502], "luck": 503, "2020": [503, 950, 958, 1008, 1247], "ii": [504, 1247], "scale": [504, 505, 985, 986, 987, 988, 1241, 1243, 1244, 1247], "screen": [504, 505, 1247], "fname": [505, 966, 1247], "preliminari": 505, "vidal": [505, 1247], "dfci": 505, "harvard": 505, "h_sapien": 505, "dload_trk": 505, "interaction3d": 509, "chain": [509, 524, 707, 717, 758, 875, 877, 975, 1107, 1108, 1110, 1247], "pdb": [509, 524, 525, 717, 759, 877, 879, 976, 977, 978, 1137, 1247, 1250], "stuctur": 509, "pfam": [509, 975, 1247], "subfamili": [511, 1247], "uniprotkb_ac": [516, 517], "mydomain": [516, 517], "hmm": [516, 517], "maxwait": [516, 517], "180": [516, 517], "part_siz": [516, 517], "get_ielm_hug": 516, "chunk": [517, 727], "retri": [517, 1036], "failur": [517, 1245], "reduc": [517, 1247], "suppli": [517, 594, 595, 1013, 1115], "what": [517, 1046, 1067, 1068, 1247, 1250], "detect": [517, 894], "wait": 517, "again": [517, 1008, 1040, 1124, 1233, 1234, 1235, 1236, 1237, 1238, 1246, 1247], "understood": [525, 1229], "miscor": 527, "complex_expans": 527, "only_id": 527, "smaller": [527, 1247, 1250], "footprint": 527, "takada": 529, "2007": [529, 944], "1186": 529, "gb": [529, 1246, 1247], "215": [529, 1247], "entri": [531, 532, 533, 534, 551, 665, 666, 1247], "page_s": 532, "200": 532, "review": [532, 909, 915, 918, 920, 923, 924, 927, 928, 931, 932, 972, 1067, 1144, 1247], "tax_id": 532, "db_type": 534, "enzyme_isoform": [540, 1247], "substrate_isoform": [540, 1247], "ptm_type": [540, 1247], "resaa": [540, 1247], "resnum": [540, 1107, 1108, 1247], "dbget": 551, "interfac": [551, 759, 972, 973, 1102, 1246, 1247], "jp": 551, "bin": 551, "www_bget": 551, "max_entity_vari": [553, 554, 555], "medicu": [553, 554, 555, 1018], "flatten": [553, 1060], "Then": [553, 1040, 1067, 1078, 1115, 1247], "largest": [553, 554, 555, 1112], "hundr": [553, 554, 555, 1112, 1247], "combinatiori": [553, 554, 555], "regulatori": [555, 753, 754, 755, 898, 1014, 1246, 1249], "join": [564, 1247], "asynchron": 564, "els": [564, 997, 1067], "togeth": [564, 972, 1247], "kirouac": 579, "2010": 579, "embopress": [579, 944], "doi": [579, 780, 782, 944], "1038": [579, 944], "msb": 579, "71": 579, "signalingflow": 584, "signalingdirect": 585, "li": 587, "get_li2012": [588, 589, 590], "brand": 592, "compani": [592, 1247], "load_lmpid": [594, 595], "lmpid_data_pubmed_ref": 596, "redistribut": [596, 984, 1008, 1247, 1249], "matrisomedb": 611, "extracellular": [611, 614, 958, 1247, 1250], "subclass": [611, 861, 1093, 1247], "ecm": [614, 1247, 1250], "cdd201287": 637, "c1": [639, 1247], "accurasci": 639, "strong": [641, 1247], "experiment": [641, 1247], "cuhk": 641, "mirtarbase_2019": 641, "registered_email": [648, 649, 650], "only_collect": [648, 650], "c5": [648, 650, 1247], "m5": [648, 650], "email": [648, 649, 650], "msigdb_email": [648, 649, 650], "h": [648, 649, 650, 1161, 1247], "c2cgp": 648, "softwar": [648, 649, 650, 1247], "broadinstitut": [648, 649, 650], "gsea": [648, 649, 650], "force_download": 649, "gmt": 649, "c2": [649, 650, 1247], "cpg": 649, "geneset": [649, 650], "distinguish": [649, 1115, 1246], "come": [649, 995, 1067, 1080, 1246, 1247, 1250], "even": [649, 1008, 1041, 1124, 1247, 1249, 1250], "cgp": 650, "best": [654, 1247], "our": [654, 1245, 1246], "paper": [654, 1247, 1250], "test": [654, 1008, 1036, 1249], "outcom": 654, "autophagi": 656, "autophagyregul": 656, "nrf2": [657, 1011, 1247], "nrf2ome": [657, 1247], "off": [663, 1041, 1053], "mine": [663, 774, 901], "fda": [663, 674, 901], "event": [663, 901], "report": [663, 901, 1247], "system": [663, 901, 1036, 1246, 1247], "organism_a": [665, 666], "organism_b": [665, 666], "rel_typ": [665, 666, 1090, 1091, 1247], "float": [665, 666, 832, 1091, 1094, 1100, 1101, 1104, 1105], "pairwis": 665, "genom": [665, 1067, 1078, 1080, 1247], "omabrows": [665, 666], "home": [665, 666, 878, 879, 1008, 1247], "sometim": [665, 666, 1115, 1246, 1247, 1249, 1250], "control": [665, 666, 810, 1019, 1117, 1229, 1247, 1249], "metric": [665, 666, 1091, 1094, 1100, 1101, 1104, 1105, 1161], "full_config": 668, "config": [668, 1030], "ol": 669, "listof_ontologi": 669, "simpli": [669, 1066, 1089, 1247], "section": [669, 1112, 1163, 1188, 1247], "variabl": [671, 672, 673, 674, 675, 723, 1039, 1040, 1041, 1042, 1043, 1044, 1045, 1046, 1047, 1048, 1050, 1051, 1247], "baselin": 672, "assoc_direct": 674, "assoc_indirect": 674, "expr": [674, 1058], "associationbyoverallindirect": 674, "associationbyoveralldirect": 674, "significantadversedrugreact": 674, "baselineexpress": 674, "shorthand": 674, "indirect": [675, 1247], "se": [682, 683], "disease_id": 685, "pathogen_taxid": 685, "pathogen": [685, 686, 1249], "pc_label": 689, "by_interact": 697, "integ": [707, 905, 985, 986, 987, 988, 1233, 1234, 1235, 1236, 1237, 1238, 1241, 1243, 1244, 1247], "previou": [707, 909, 918, 928], "constitut": [708, 1124, 1247], "stoichiometri": [708, 809, 974, 1247], "analysi": [709, 1247, 1249], "resolut": [709, 863, 1093], "num": 713, "_ref": 713, "phosphoprotein": [714, 1247], "inner": 717, "keepfil": 718, "neither": [718, 782, 1247], "chunk_siz": [721, 722, 724, 725, 726, 727, 728], "100": [721, 722, 724, 725, 726, 727, 728, 909, 915, 918, 928, 1124, 1246, 1247], "half": [721, 722, 724, 725, 726, 727, 728, 1247], "hour": [721, 722, 724, 725, 726, 727, 728, 1247], "batch": [721, 722, 724, 725, 726, 727, 728, 972], "better": [721, 722, 724, 725, 726, 727, 728, 997, 1115, 1247, 1249, 1250], "stai": [721, 722, 724, 725, 726, 727, 728, 1247], "caus": [721, 722, 724, 725, 726, 727, 728], "timeout": [721, 722, 724, 725, 726, 727, 728, 1036], "graphql": [723, 727], "thousand": [727, 1247], "ltp_onli": 734, "homo": [735, 918, 1247], "sapien": [735, 918, 1247], "htp": [744, 746, 749, 750], "biopax": [746, 749, 812, 815, 1115, 1124, 1246, 1249], "disrupt": 753, "induc": [753, 1247], "vast": [754, 1036, 1247], "close": [754, 1036, 1112, 1115, 1247], "enough": [754, 1247], "safe": [754, 1115], "align": [754, 1233, 1234, 1235, 1236, 1237, 1238], "regsit": 755, "tabular": [755, 1247, 1250], "uniprot_1": 757, "chain_1": 757, "residue_1": 757, "seqnum_1": 757, "uniprot_2": 757, "chain_2": 757, "residue_2": 757, "seqnum_2": 757, "bond": [758, 978], "refactor": [758, 759, 1246], "contact": [758, 759, 877, 878, 879, 1245, 1247], "return_unmap": 759, "unmap": 759, "normal": [759, 767, 768, 774, 958, 1102, 1112, 1246, 1247], "could": [759, 1067, 1080, 1087, 1089, 1091, 1094, 1096, 1105, 1247], "uniprot_isoform": 762, "pathologi": [767, 768], "sourcetyp": 772, "mix": [772, 1247, 1250], "consequencetyp": 772, "feature_field": 772, "dictread": 774, "bachman": 774, "assembl": 774, "phosphoproteom": 774, "biorxiv": 774, "1101": 774, "822668v3": 774, "only_evid": 775, "only_literatur": 775, "ftp": [778, 1036, 1247], "simpler": 778, "lowercas": [778, 1146, 1247], "sid": 778, "idlist": [780, 782, 784, 785], "pmc": [780, 782], "compli": 782, "attempt": [782, 892, 1019, 1067, 1078, 1108, 1137, 1246, 1247], "manuscript": [782, 1249], "put": [787, 865, 866, 867], "ramilowski": [787, 788], "2015": [787, 788, 1247], "long_not": 788, "ramp_id_typ": [791, 1247], "fast": [791, 1247], "sql": [791, 792, 794, 795, 1247], "curi": 793, "sqlite": [794, 1247], "sqlite3": [794, 1247], "temporari": [794, 1115], "acsn": [800, 1016], "protein_name_typ": [801, 812], "mandatory_ref": [802, 810], "elem": 804, "cref": 809, "entity_uniprot": [809, 811], "complexvari": [809, 1124, 1126], "biopax_fil": 812, "binari": [812, 815, 1036], "sbml": [813, 814, 816], "representationa": 814, "pathwaya": 814, "cachefil": [815, 890, 992], "ask": [815, 1247], "veri": [815, 1246, 1247, 1250], "stringent": 815, "free": [815, 1008, 1108, 1112, 1115, 1137, 1139, 1140, 1246, 1247, 1249], "approx": [815, 1247], "2g": 815, "hierarchi": 819, "jonetjakobsson": [823, 824, 825], "fruitfli": [823, 824], "zebrafish": [823, 824], "chicken": [823, 824], "elegan": [823, 824], "xenopu": [823, 824], "tropicali": [823, 824], "yeast": [823, 824], "anoli": [823, 824], "carolinensi": [823, 824], "left": [825, 1067, 1125], "atc": [829, 833], "umls_concept_on_label": [830, 832], "umls_concept_in_meddra": [830, 832], "side_effect": [830, 832], "meddra_id": [831, 834], "side_effect_nam": [831, 834], "frequenc": [832, 835, 836], "uml": [835, 836], "concept": [835, 836, 1247], "attent": 835, "sider_side_effect": 835, "20k": 835, "freq": 836, "independ": [836, 1247], "exclude_secondari": 840, "signalink3": [840, 1011, 1247, 1250], "raw_record": 845, "expand_famili": 845, "uniroma2": [845, 1247], "split": [845, 909, 1249], "10116": [845, 909, 915, 918, 928, 1247, 1250], "span": [851, 1247], "highest_confid": [854, 857, 858], "high_confid": [854, 857, 858], "medium_confid": [854, 857, 858], "low_confid": [854, 857, 858], "physical_interaction_scor": [854, 857], "link": 854, "subscor": [854, 857, 858], "interactor": [854, 895], "pre": [854, 857, 858, 1245], "channel": [857, 858, 1247, 1250], "form": [857, 1036], "tax": [859, 972], "scientif": [859, 1149, 1245], "surfac": [861, 1058, 1226, 1247], "switch": 863, "elm": [863, 979, 1012], "classifi": [863, 1247, 1250], "only_class": 873, "known": [873, 972, 1247, 1250], "3d": [875, 877, 878, 1247], "pdb_uniprot": 877, "threedcomplex_chain": 877, "automat": [877, 878, 960, 967, 971, 1102, 1246, 1247, 1249], "pdb_chain": 877, "3dcomplex": [878, 879], "shmoo": [878, 879], "weizmann": [878, 879], "il": [878, 879], "elevi": [878, 879], "3dcomplexv6": [878, 879], "cgi": [878, 879], "threedcomplex_contact": 878, "ddi_flat": [881, 882], "dmi_flat": 883, "intract": 888, "soup": 891, "trip_get_uniprot": 891, "syn": [892, 1247], "exclude_method": [893, 894], "specul": [893, 894], "trip_process": 893, "dadio": 894, "take_a_trip": 894, "provcess": 894, "bait": 894, "tab": [895, 909], "intr": 895, "trp_uniprot": 895, "tag": [895, 1115, 1247], "fill": 895, "twice": 895, "trp": 895, "trrustinteract": 898, "v2": 898, "academ": [898, 984, 1008, 1247], "oup": 898, "46": [898, 1247], "d1": [898, 1247], "d380": 898, "4566018": 898, "safeti": 901, "ucqueri": [904, 1161], "listsourc": [904, 1161], "unichem_sourc": 905, "unichem_info": 906, "ncbi_id": [908, 1247], "latin": [908, 1152, 1153, 1247], "english": [908, 1146, 1149, 1247], "latin_synonym": [908, 1247], "concaten": [909, 915, 918, 928], "sever": [909, 915, 918, 928, 1246, 1247], "query_build": [909, 918, 928, 1247], "AND": [909, 915, 918, 928, 1058, 1112, 1247, 1250], "organism_id": [909, 915, 918, 928, 1247], "abov": [909, 915, 918, 928, 960, 967, 971, 992, 1246, 1247, 1250], "OR": [909, 915, 918, 928, 1058, 1247], "op": [909, 915, 918, 928, 957, 1246, 1247], "underscor": [909, 915, 918, 928, 999, 1008, 1247], "mass": [909, 915, 918, 928, 1247], "50000": [909, 915, 918, 928, 1247], "TO": [909, 915, 918, 928, 1247], "lit_author": [909, 915, 918, 928, 1247], "huang": [909, 915, 918, 928, 1247], "kovac": [909, 915, 918, 928, 1247], "_and": [909, 915, 918, 928, 1247], "parenthes": [909, 915, 918, 928, 1058, 1247], "interv": [909, 915, 918, 928, 1053], "help": [909, 915, 918, 928, 1066, 1067, 1245], "syntax": [909, 915, 918, 928], "_field_synonym": [909, 918, 928], "return_field": [909, 918, 928], "__iter__": 909, "linebreak": 909, "fail_on_empti": 909, "name_process": 909, "appropri": [909, 1098, 1099, 1115, 1246, 1247], "especi": [909, 1247, 1249], "were": [909, 918, 928, 997, 1247], "exactli": [909, 918, 928, 1247, 1250], "urlencod": 909, "url_plain": 909, "plain": [909, 1247], "entry_vers": [910, 1247], "sequence_vers": [910, 1247], "entry_nam": [910, 1247], "replaced_bi": [910, 1247], "archiv": [911, 1036, 1037, 1067, 1115], "delet": [911, 1039, 1040, 1067, 1115, 1246, 1247, 1249], "insert": 915, "confirm": [917, 919], "uniprotqueri": [918, 928, 1247], "histori": [921, 1245], "oldest": [921, 1246], "fit": [933, 1067, 1247], "cui": 944, "msb4100200": 944, "researchg": 945, "humansignalingnetwork": [945, 947], "publish": [945, 1247], "jan": 945, "edwin": 945, "omnipath": [945, 958, 1008, 1013, 1015, 1016, 1245, 1249, 1250], "research": [945, 1247], "gate": 945, "wang_interact": 945, "s4": 950, "07": [950, 1247], "025": 950, "wojtowicz": 950, "1111": 952, "nya": 952, "12776": 952, "25988664": 952, "scope": [955, 958, 1247, 1250], "avoid": [955, 958, 1045, 1050, 1233, 1234, 1235, 1236, 1237, 1238, 1246, 1247], "enabl": [955, 958, 984, 1112, 1247], "annotdefbas": 955, "union": 957, "annotopbas": 957, "intersect": [957, 958, 1117, 1123, 1224], "behav": [958, 1247], "s10": 958, "turei": 958, "prep": 958, "actual": [958, 1029, 1229, 1247, 1248], "annot_composite_database_nam": 958, "entit": 958, "cell_surfac": 958, "itself": [958, 1050, 1051, 1247], "isdisjoint": 958, "null": [958, 1247], "mappinginput": [960, 961, 962, 963, 966, 967, 968, 970, 971, 972, 1066], "pro_id_type_a": [960, 967], "pro": [960, 967, 1070, 1247], "pro_id_type_b": [960, 967], "biomart_id_type_a": 961, "biomart_id_type_b": 961, "input_": 962, "col_a": 962, "col_b": 962, "paramat": [963, 968, 970], "metabolom": [963, 1066, 1245, 1246], "type_": 964, "resource_id_type_a": [964, 1247], "resource_id_type_b": [964, 1247], "id_col_a": [965, 1247], "id_col_b": [965, 1247], "extra_edge_attr": [965, 1247], "extra_node_attrs_a": 965, "extra_node_attrs_b": 965, "positive_filt": 965, "negative_filt": 965, "mark_sourc": 965, "mark_target": 965, "curl_arg": 965, "must_have_refer": 965, "unique_field": 965, "expand_complex": [965, 1067, 1078, 1079, 1080], "only_default_organ": 965, "vertex": [965, 1061, 1064, 1229, 1233, 1234, 1235, 1236, 1237, 1238, 1247], "particular": [965, 984, 1247], "vertic": [965, 1229, 1233, 1234, 1235, 1236, 1237, 1238, 1239, 1241, 1243, 1244, 1247], "consortium": [967, 1247], "ramp": [968, 1066, 1245], "id_col": 969, "extra_attr": [969, 995, 1247], "unichem": [970, 1066, 1247, 1249], "uniprot_id_type_a": 971, "uniprot_id_type_b": 971, "upload": [971, 1066], "webservic": [971, 1245], "would": [972, 1247, 1248], "directli": [972, 999, 1066, 1067, 1068, 1115, 1226, 1245, 1246, 1250], "programmat": [972, 1247], "slightli": [972, 1008], "capabl": 972, "resource_id_typ": [972, 1066], "short": [973, 1153, 1247, 1250], "stoichiometr": 974, "coeffici": 974, "repetit": 974, "impli": 974, "kept": [974, 1067, 1247], "compat": [974, 984, 1008, 1249], "add_attr": 974, "domain_id_typ": 975, "domain_a": 976, "domain_b": 976, "ref": [976, 981], "contact_residu": 976, "get_lin": 977, "resources_only_primari": 977, "intend": [977, 1247], "enzyme_genesymbol": [977, 1247], "substrate_genesymbol": [977, 1247], "residue_typ": [977, 1247], "residue_offset": [977, 1247], "css": 978, "stab_en": 978, "solv_en": 978, "area": [978, 1229], "add_residu": 978, "res_a": 978, "res_b": 978, "undefin": [978, 1247], "124": [978, 1247], "serin": 978, "hbond": 978, "sbridg": 978, "ssbond": 978, "covbond": 978, "bond_typ": 978, "get_bond": 978, "throught": 978, "numof_residu": 978, "bound": [978, 1229, 1241, 1243, 1244, 1247], "regex": 979, "motif_nam": 979, "prob": 979, "attrib": [984, 1008], "alik": [984, 1008], "licensefeatur": [985, 987, 988], "check_level": [985, 986, 987, 988], "int_to_level": [985, 986, 987, 988], "nearest": [985, 986, 987, 988], "ordin": [985, 986, 987, 988], "level_to_int": [985, 986, 987, 988], "to_int": [985, 986, 987, 988], "pp": 992, "htp_threshold": 992, "20": [992, 1247], "data_attr_nam": 994, "evidence_typ": [995, 998, 1000], "resource_attr": 995, "get_via": 995, "data_typ": [996, 999, 1000], "mutablemap": 997, "formerli": [997, 1247], "thin": 997, "solut": [997, 1247], "clear": [997, 1247], "k": [997, 1247], "view": [997, 1246], "pop": 997, "keyerror": 997, "popitem": 997, "setdefault": 997, "lack": [997, 1012], "networkresourcekeybas": 999, "came": 999, "logfil": [1005, 1247], "resource_info_path": 1008, "posixpath": 1008, "runner": 1008, "use_package_path": 1008, "aim": [1008, 1246, 1247], "01": [1008, 1247], "develop": [1008, 1246], "02": [1008, 1247], "inherit": [1008, 1247], "add_resource_attr": 1008, "place": [1008, 1247], "pathway_noref": [1008, 1247], "pathway_al": [1008, 1247], "tfregulon": [1008, 1018], "reaction_pc": 1008, "enzyme_substr": [1008, 1247], "small_molecule_protein": [1008, 1247], "tf_mirna": [1008, 1247], "pathwaycommons_transcript": 1008, "interaction_htp": 1008, "interaction_misc": [1008, 1247], "lncrna_target": 1008, "transcription_onebyon": [1008, 1247], "transcription_dorothea": 1008, "ptm_noref": [1008, 1247], "ptm_all": [1008, 1247], "reaction_misc": [1008, 1247], "post_transcript": 1008, "process_descript": 1008, "drug_target": 1008, "license_purpos": [1008, 1247], "commerci": 1008, "profit": [1008, 1247], "license_shar": 1008, "noderiv": 1008, "noshar": 1008, "license_attrib": 1008, "noattrib": 1008, "incld": 1008, "safest": 1008, "sequenti": 1008, "legal": [1008, 1247], "desir": [1008, 1053, 1089, 1233, 1234, 1235, 1236, 1237, 1238], "alter": [1008, 1247], "mention": [1008, 1247], "who": 1008, "__resource__": 1008, "incid": 1008, "collect_network": [1008, 1247], "license_filt": 1008, "secondary_resourc": 1008, "postfix": [1008, 1247], "tfacts_collectri": 1008, "forc": [1008, 1053, 1247], "remove_old": 1008, "adhesom": [1011, 1247], "arn": [1011, 1247], "baccin2019": [1011, 1247], "ca1": [1011, 1247], "cellchatdb": [1011, 1247], "cellink": [1011, 1247], "celltalkdb": [1011, 1247], "connectomedb": [1011, 1247], "death": [1011, 1247], "guide2pharma": [1011, 1247], "icellnet": [1011, 1247], "lrdb": [1011, 1247], "pdz": [1011, 1247], "ramilowski2015": [1011, 1247], "scconnect": [1011, 1247], "spike": [1011, 1247, 1250], "talklr": [1011, 1247], "trip": [1011, 1247], "flow": [1011, 1250], "dbptm": [1012, 1247], "depod": [1012, 1247], "domino": 1012, "hprd_p": 1012, "iptmnet": [1012, 1247], "kea": [1012, 1247], "lmpid": 1012, "phelm": 1012, "psite": 1012, "alz": 1013, "ccmap": [1013, 1014], "dip": [1013, 1014], "innatedb": [1013, 1014], "lit17": 1013, "matrixdb": [1013, 1014, 1247], "mppi": [1013, 1014], "laudanna_direct": 1015, "laudanna_effect": 1015, "oreganno_old": 1017, "ab": 1018, "encode_dist": 1018, "encode_prox": 1018, "htri": 1018, "oreganno": 1018, "pazar": 1018, "trrust": 1018, "license_dir": 1021, "dataset_a": 1023, "dataset_b": 1023, "No": [1025, 1247], "quicker": 1029, "cache_item": 1030, "md5": [1030, 1066], "hash": [1030, 1066, 1247], "cachedir": 1032, "ensur": [1032, 1246, 1247], "req_head": [1036, 1247], "debug": [1036, 1045, 1046, 1051], "outf": [1036, 1224], "compr": [1036, 1037], "files_need": [1036, 1037], "connect_timeout": 1036, "ignore_content_length": 1036, "init_fun": 1036, "get_jsessionid": 1036, "init_use_cach": 1036, "default_mod": [1036, 1037], "override_post": 1036, "init_head": 1036, "return_head": 1036, "compress": [1036, 1037, 1115], "write_cach": [1036, 1066], "force_quot": 1036, "sftp_user": 1036, "sftp_passwd": 1036, "sftp_passwd_fil": 1036, "sftp_port": 1036, "22": [1036, 1038, 1247, 1250], "sftp_host": 1036, "sftp_ask": 1036, "setup": [1036, 1048, 1247], "cache_dir": 1036, "bypass_url_encod": 1036, "empty_attempt_again": 1036, "keep_fail": 1036, "alpn": 1036, "http2": 1036, "fileopen": [1036, 1115], "pycurl": [1036, 1247], "amount": [1036, 1247], "cooki": 1036, "param": [1036, 1066, 1112, 1229, 1233, 1234, 1235, 1236, 1237, 1238, 1241, 1243, 1244], "multipart": 1036, "quot": 1036, "redirect": 1036, "gzip": [1036, 1037], "tar": [1036, 1037, 1115], "gz": [1036, 1037, 1115], "zip": [1036, 1037, 1115], "cache_path": 1036, "construct_binary_data": 1036, "byte": [1036, 1112], "is_quot": 1036, "stackoverflow": 1036, "question": [1036, 1246], "1637762": 1036, "open_tgz": [1036, 1037], "replace_forbidden": 1036, "repl": 1036, "_": 1036, "charact": [1036, 1067, 1078, 1080, 1247], "forbidden": 1036, "slash": 1036, "unix": 1036, "window": 1036, "environ": [1036, 1247], "set_binary_data": 1036, "transmit": 1036, "url_fix": 1036, "charset": 1036, "utf": [1036, 1037], "121017": 1036, "854988": 1036, "file_param": 1037, "_open": 1037, "set_fileobj": 1037, "bz2": 1037, "multifil": 1037, "examin": 1037, "host": [1038, 1247, 1249], "port": 1038, "rownam": 1038, "_global_context_off": [1039, 1041, 1043, 1045, 1047, 1050], "context": [1039, 1040, 1041, 1042, 1043, 1044, 1045, 1046, 1047, 1048, 1050, 1051, 1229, 1233, 1234, 1235, 1236, 1237, 1238, 1241, 1244, 1247], "behaviour": [1039, 1042, 1043, 1047, 1067, 1078, 1080, 1247], "behind": [1039, 1040, 1041, 1042, 1043, 1044, 1045, 1046, 1047, 1048, 1050, 1051, 1247], "scene": [1039, 1040, 1041, 1042, 1043, 1044, 1045, 1046, 1047, 1048, 1050, 1051, 1247], "cachedel": [1039, 1040], "data_format": [1039, 1040, 1041, 1042, 1043, 1044, 1045, 1046, 1047, 1048, 1050, 1051, 1247, 1249], "_global_context_on": [1040, 1042, 1044, 1046, 1048, 1051], "dryrun": [1040, 1047, 1048], "know": [1040, 1247], "cache_on": 1041, "cacheprint": [1043, 1044], "restor": [1045, 1047, 1050], "cache_debug_off": 1045, "cache_debug_on": 1046, "cache_dryrun_off": 1047, "cache_dryrun_on": 1048, "lastcurl": [1050, 1051, 1247], "preserv": [1050, 1051, 1247], "cache_preserve_off": 1050, "cache_preserve_on": 1051, "done": [1053, 1246], "init": 1053, "unit": 1053, "had": 1053, "my": [1053, 1246], "progressbar": 1053, "great": [1053, 1247], "tqdm": 1053, "move": [1053, 1249], "oldprogress": 1053, "get_desc": 1053, "someth": [1053, 1246, 1247], "constant": [1053, 1233, 1234, 1235, 1236, 1237, 1238], "life": 1053, "stage": [1053, 1247], "init_tqdm": 1053, "set_don": 1053, "set_statu": 1053, "set_tot": 1053, "msg": [1053, 1247], "busi": 1053, "finish": [1053, 1247], "destroi": 1053, "use_pickle_cach": [1058, 1062, 1063], "geneontologi": [1058, 1247], "expr_names_to_term": 1058, "logic": 1058, "get_annot_ancestor": 1058, "lowest": [1058, 1060], "get_annots_ancestor": 1058, "get_term": [1058, 1060], "has_any_term": 1058, "has_term": 1058, "i_select_by_term": 1058, "return_uniprot": 1058, "select_by_expr": 1058, "select_by_al": 1058, "preced": 1058, "0005576": [1058, 1247], "0070062": 1058, "0005887": 1058, "hormon": [1058, 1247], "0009897": 1058, "select_by_expr_term": 1058, "select_by_nam": 1058, "select_by_term": 1058, "goannot": [1059, 1247], "all_from_aspect": 1060, "aspect_from_nam": 1060, "get_all_ancestor": 1060, "include_se": 1060, "get_all_descend": [1060, 1247], "get_aspect": 1060, "is_leaf": 1060, "leaf": 1060, "is_nam": 1060, "is_root": 1060, "root": [1060, 1247, 1249], "is_term": 1060, "names_to_term": 1060, "names_to_terms_aspect": 1060, "namess": 1060, "set_of": 1060, "terms_nam": 1060, "to_term": 1060, "set_of_nam": 1060, "set_of_term": 1060, "subgraph_nod": 1060, "subgraph": 1060, "terms_to_nam": 1060, "terms_to_names_aspect": 1060, "load_a_to_b": 1066, "load_b_to_a": 1066, "lifetim": [1066, 1067, 1068, 1094, 1129], "300": [1066, 1067, 1068, 1094, 1129, 1247], "mappingt": [1066, 1067, 1082, 1083, 1247], "coupl": [1066, 1112], "much": [1066, 1246, 1247, 1249, 1250], "mandatori": [1066, 1247, 1249, 1250], "identif": [1066, 1094, 1104], "entrez_protein": 1066, "entrez_mirna": 1066, "preiod": [1066, 1067, 1068], "cleanup": [1066, 1067, 1068], "id_type_sid": 1066, "success": [1066, 1067], "mapping_table_a_to_b": 1066, "mapping_table_b_to_a": 1066, "read_cach": 1066, "previous": [1066, 1112], "read_mapping_arrai": 1066, "read_mapping_biomart": 1066, "read_mapping_fil": 1066, "read_mapping_hmdb": 1066, "read_mapping_ramp": 1066, "read_mapping_unichem": 1066, "read_mapping_uniprot": 1066, "programmatic_access": 1066, "read_mapping_uniprot_list": 1066, "set_uniprot_spac": 1066, "space": [1066, 1247], "setup_cach": 1066, "tables_load": 1066, "cleanup_period": [1067, 1094, 1115, 1129], "translate_deleted_uniprot": 1067, "keep_invalid_uniprot": 1067, "trembl_swissprot_by_genesymbol": 1067, "period": [1067, 1247], "unus": 1067, "forev": 1067, "obsolet": 1067, "chain_map": [1067, 1247], "by_id_typ": [1067, 1247], "via_id_typ": 1067, "map_nam": [1067, 1079, 1246, 1247], "create_revers": 1067, "get_table_kei": 1067, "unambig": [1067, 1068, 1079], "guess_typ": 1067, "tri": [1067, 1072, 1233, 1234, 1235, 1236, 1237, 1238], "has_mapping_t": 1067, "expiri": [1067, 1068], "timer": 1067, "load_genesymbol5": 1067, "load_map": [1067, 1108], "mapread": [1067, 1247], "load_uniprot_stat": 1067, "thing": 1067, "try": [1067, 1078, 1080, 1246, 1247], "fail": 1067, "uniprot_cleanup": [1067, 1078, 1079, 1080, 1247], "ideal": [1067, 1078], "think": [1067, 1078, 1247], "how": [1067, 1078, 1245, 1246], "predefin": [1067, 1078, 1246, 1247], "couldn": [1067, 1078], "refseqp": [1067, 1078, 1080, 1247], "np_": [1067, 1078, 1080], "xp_": [1067, 1078, 1080], "ensp": [1067, 1078, 1080], "enst": [1067, 1078, 1080], "ensg": [1067, 1078, 1080], "dna": [1067, 1078, 1080], "hgnc": [1067, 1078, 1080, 1247], "embl": [1067, 1078, 1080, 1246, 1247], "ddbj": [1067, 1078, 1080], "genebank": [1067, 1078, 1080], "cd": [1067, 1078, 1080], "embl_id": [1067, 1078, 1080], "And": [1067, 1078, 1080, 1247, 1250], "encount": [1067, 1078, 1080, 1246], "map_name0": [1067, 1247], "recommend": [1067, 1079, 1094, 1100, 1101, 1104, 1105, 1247], "mostli": [1067, 1079], "loss": [1067, 1079], "seamlessli": [1067, 1080], "mapping_t": [1067, 1247], "loader": [1067, 1140], "only_uniprot_ac": 1067, "accession_numb": 1067, "other_organism_uniprot": 1067, "primary_uniprot": 1067, "remove_expir": 1067, "ago": 1067, "remove_kei": 1067, "remove_t": 1067, "reverse_kei": 1067, "reverse_map": 1067, "whenev": 1067, "translate_deleted_uniprot_by_genesymbol": 1067, "translation_df": [1067, 1247], "translation_dict": [1067, 1247], "trembl_swissprot": 1067, "callback": 1067, "correct": 1067, "counterpart": [1067, 1250], "valid_uniprot": [1067, 1247], "which_tabl": 1067, "unload": [1068, 1102, 1139, 1140, 1247], "usag": [1068, 1093, 1115, 1161], "get_kei": 1068, "pri": 1070, "sec": 1070, "mirbas": [1070, 1247], "label_id_typ": [1073, 1074], "idtyp": [1075, 1247], "mappingtabledefinit": [1081, 1247], "hc": [1086, 1087], "ensemblorthologbas": 1086, "one2on": [1087, 1094, 1100, 1101, 1104, 1105, 1247], "one2mani": [1087, 1094, 1100, 1101, 1104, 1105], "many2mani": [1087, 1094, 1100, 1101, 1104, 1105], "proteinorthologi": [1087, 1089, 1091], "ensembl_hc": [1087, 1094, 1100, 1101, 1104, 1105, 1247], "ensembl_typ": [1087, 1094, 1100, 1101, 1104, 1105, 1247], "full_record": [1087, 1089, 1091, 1094, 1096, 1100, 1101, 1104, 1247], "orthologbas": [1087, 1089, 1091, 1094, 1096, 1101], "against": [1087, 1091, 1247, 1250], "translate_df": [1087, 1089, 1091, 1094, 1096], "ortho_df": [1087, 1089, 1091, 1096], "layout": [1087, 1089, 1091, 1094, 1096, 1105, 1225, 1229, 1241, 1243, 1244], "homologeneorthologbas": 1088, "homologen": [1089, 1094, 1096, 1100, 1101, 1104, 1105, 1246, 1247, 1249, 1250], "homologu": [1089, 1096], "omaorthologbas": 1090, "supercl": 1093, "abcmeta": 1093, "mro": 1093, "virtual": 1093, "abc": 1093, "decor": 1093, "oma": [1094, 1100, 1101, 1104, 1105, 1247], "oma_rel_typ": [1094, 1100, 1101, 1104, 1105], "oma_scor": [1094, 1100, 1101, 1104, 1105], "get_dict": [1094, 1247], "bewar": [1094, 1105], "preload_prot": 1097, "orthology_arg": 1098, "preload_seq": [1099, 1247], "namespac": 1103, "get_residu": 1108, "pdb_start": 1109, "pdb_end": 1109, "uniprot_start": 1109, "uniprot_end": 1109, "usernam": 1112, "output_format": 1112, "extens": 1112, "feel": [1112, 1246, 1247], "wilhelm": 1112, "v509": 1112, "n7502": 1112, "nature13319": 1112, "descritpion": 1112, "visit": 1112, "dai": [1112, 1247], "admin": [1112, 1247], "get_express": 1112, "tissue_averag": 1112, "unnorm": 1112, "disk": [1112, 1247], "averag": [1112, 1247], "sampl": 1112, "get_piec": 1112, "20480": 1112, "delimit": 1112, "mb": [1112, 1246, 1247], "curli": 1112, "brace": 1112, "tissue_id": 1112, "calculation_method": 1112, "no_isoform": 1112, "get_tissu": 1112, "pandas_matrix": 1112, "Not": [1112, 1247], "shold": 1112, "tissues_x_protein": 1112, "800": 1115, "file_from_arch": 1115, "easili": [1115, 1247, 1250], "lxml": [1115, 1247], "etre": [1115, 1247], "minim": [1115, 1247], "me": 1115, "thod": 1115, "arbit": 1115, "rari": 1115, "parser": 1115, "id42": 1115, "akt1": [1115, 1247], "ffjh2": 1115, "tr9gy": 1115, "bp": 1115, "everi": [1115, 1247, 1249], "nucleic": [1115, 1247], "But": [1115, 1246, 1247], "minor": 1115, "mo": 1115, "dific": 1115, "ternal": 1115, "dure": 1115, "risk": 1115, "homo_sapien": 1115, "owl": 1115, "biopax_s": 1115, "uncompress": 1115, "cleanup_hook": 1115, "close_biopax": 1115, "init_etre": 1115, "open_biopax": 1115, "workflow": [1115, 1249], "set_progress": 1115, "entityset": [1116, 1117, 1119, 1122, 1123, 1127], "itermemb": 1117, "conveni": [1117, 1247], "reactionsid": 1117, "er": 1118, "ed": 1118, "protein_id": 1122, "default_id_typ": 1124, "max_complex_combin": 1124, "max_reaction_combin": 1124, "gen_cvari": 1124, "in_same_compon": 1124, "merge_complex": 1124, "this_round": 1124, "biopaxread": [1124, 1249], "subcomplex": 1124, "rcomplex": 1124, "merge_cvari": 1124, "fact": [1124, 1247], "variat": 1124, "right": 1125, "left_attr": 1125, "right_attr": 1125, "proteinfamili": 1126, "ref_id": 1127, "is_not": 1129, "iterdb": [1139, 1140], "iterprotein": [1139, 1140], "processor": [1139, 1140, 1246], "region": [1141, 1247], "canon": [1141, 1163, 1195, 1205, 1220], "findal": [1141, 1247], "fragment": [1141, 1247], "fasta": 1143, "taxon_id": [1146, 1147, 1148, 1149], "capit": [1146, 1163, 1205], "languag": [1149, 1246, 1247], "codenam": 1149, "long_nam": 1152, "shorten": [1152, 1153], "dot": 1153, "genu": [1153, 1247], "mark": 1153, "taxon_nam": [1154, 1155, 1156, 1157, 1158], "connectivity_search": 1161, "id_list": 1161, "cheminformat": 1161, "widesearchinfo": 1161, "inchikey2anyth": 1161, "lst": [1161, 1247], "smiles2chembl": 1161, "uniprot_id": [1163, 1164, 1165, 1166, 1167, 1168, 1170, 1171, 1172, 1173, 1174, 1175, 1176, 1177, 1178, 1179, 1180, 1181, 1182, 1183, 1184, 1185, 1186, 1187, 1188, 1189, 1190, 1191, 1192, 1193, 1194, 1195, 1196, 1197, 1198, 1199, 1200, 1201, 1202, 1203, 1204, 1205, 1206, 1207, 1208, 1209, 1210, 1211, 1212, 1213, 1214, 1215, 1216, 1217, 1218, 1219, 1220, 1221], "info_sect": 1163, "titl": [1163, 1247], "availebl": [1163, 1188], "keywords_with_xref": 1163, "dalton": [1163, 1220], "fileobj": [1169, 1187, 1199, 1247], "print_featur": [1169, 1247], "table_format": 1169, "uniprotprotein": [1172, 1202], "ordereddict": [1172, 1247], "width": [1177, 1199, 1224], "40": [1177, 1247], "tablefmt": [1177, 1199], "fancy_grid": [1177, 1199], "underli": [1177, 1199], "tabul": [1177, 1199], "versatil": [1177, 1199, 1246, 1247, 1249], "well": [1177, 1199, 1246, 1247], "astanin": [1177, 1199], "xsize": 1224, "cairotest": 1224, "1024": 1224, "height": 1224, "bgcol": 1224, "embl_gray125": 1224, "interscol": 1224, "ysize": 1224, "ycol": 1224, "margin": [1224, 1225, 1247], "24": [1224, 1247], "mincircl": 1224, "cellpad": 1224, "graphix_dir": 1225, "graphix_format": 1225, "title_text": 1225, "title_font_famili": 1225, "title_font_s": 1225, "title_color": 1225, "646567": 1225, "fruchterman_reingold": 1225, "layout_param": 1225, "vertex_label": 1225, "vertex_s": [1225, 1247], "vertex_label_s": [1225, 1247], "degree_label_s": 1225, "edge_width": [1225, 1247], "vertex_color": [1225, 1247], "6ea945": 1225, "vertex_label_color": [1225, 1247], "007b7f": 1225, "vertex_alpha": 1225, "aa": [1225, 1247], "vertex_frame_color": 1225, "ffffff00": 1225, "vertex_frame_width": [1225, 1247], "edge_label": 1225, "edge_label_s": 1225, "edge_label_color": 1225, "edge_curv": 1225, "edge_color": [1225, 1247], "818284": 1225, "edge_alpha": 1225, "autocurv": 1225, "vertex_label_font": 1225, "san": 1225, "serif": 1225, "edge_label_font": 1225, "edge_arrow_s": 1225, "edge_arrow_width": 1225, "palett": [1225, 1229, 1233, 1234, 1235, 1236, 1237, 1238, 1241, 1243, 1244], "bbox": [1225, 1229, 1241, 1244], "dimens": 1225, "1280": 1225, "draw": [1226, 1229, 1233, 1234, 1235, 1236, 1237, 1238, 1239, 1241, 1243, 1244], "routin": [1226, 1239], "cairo": [1226, 1229, 1233, 1234, 1235, 1236, 1237, 1238, 1241, 1244, 1247], "l": [1226, 1229, 1233, 1234, 1235, 1236, 1237, 1238, 1241, 1243, 1244, 1247], "defaultgraphdraw": [1226, 1241, 1243, 1244], "ubigraph": 1226, "displai": [1226, 1247], "ubigraphdraw": 1226, "u": [1226, 1246, 1247], "ubietylab": 1226, "net": [1226, 1247], "cytoscap": [1226, 1246, 1247], "cytoscaperpc": 1226, "plugin": 1226, "gforg": 1226, "nbic": 1226, "nl": 1226, "project": 1226, "cytoscapegraphdraw": 1226, "abstractcairographdraw": [1228, 1229, 1230, 1231], "vertex_drawer_factori": 1229, "edge_drawer_factori": 1229, "label_drawer_factori": 1229, "visualis": 1229, "plane": 1229, "curv": 1229, "invok": 1229, "plot": [1229, 1232, 1245, 1249], "__plot__": 1229, "drawer": [1229, 1232, 1233, 1234, 1235, 1236, 1237, 1238, 1239, 1241, 1243, 1244], "boundingbox": [1229, 1241, 1244], "box": [1229, 1241, 1243, 1244], "factori": 1229, "abstractcairovertexdraw": [1229, 1244], "color": [1229, 1233, 1234, 1235, 1236, 1237, 1238, 1241, 1243, 1244], "defaultvertexdraw": 1229, "abstractedgedraw": [1229, 1234, 1235, 1238], "style": [1229, 1232, 1249, 1250], "drawn": [1229, 1233, 1234, 1235, 1236, 1237, 1238, 1241, 1243, 1244], "arrowedgedraw": 1229, "textdraw": 1229, "abstract": [1233, 1241, 1243], "concret": [1233, 1243], "draw_directed_edg": [1233, 1234, 1235, 1236, 1237, 1238], "src_vertex": [1233, 1234, 1235, 1236, 1237, 1238], "dest_vertex": [1233, 1234, 1235, 1236, 1237, 1238], "draw_loop_edg": [1233, 1234, 1235, 1236, 1237, 1238], "circl": [1233, 1234, 1235, 1236, 1237, 1238], "draw_undirected_edg": [1233, 1234, 1235, 1236, 1237, 1238], "get_label_posit": [1233, 1234, 1235, 1236, 1237, 1238], "midpoint": [1233, 1234, 1235, 1236, 1237, 1238], "y": [1233, 1234, 1235, 1236, 1237, 1238, 1241, 1243, 1244, 1247], "horizont": [1233, 1234, 1235, 1236, 1237, 1238], "taken": [1233, 1234, 1235, 1236, 1237, 1238], "textalign": [1233, 1234, 1235, 1236, 1237, 1238], "alpha_at_src": 1234, "alpha_at_dest": 1234, "vari": 1234, "alpha": [1234, 1236, 1237, 1247], "destin": [1234, 1236, 1237, 1238], "arrow": 1235, "alphavaryingedgedraw": [1236, 1237], "opac": [1236, 1237], "transpar": [1236, 1237], "interpol": [1236, 1237], "taper": 1238, "wider": 1238, "narrow": 1238, "abstractvertexdraw": 1241, "abstractcairodraw": 1241, "canva": 1241, "visual_vertex": [1241, 1243, 1244], "coord": [1241, 1243, 1244], "Its": [1241, 1243, 1244, 1247], "visualvertexbuild": [1241, 1243, 1244], "coordin": [1241, 1243, 1244, 1246, 1247], "algorithm": [1241, 1243, 1244], "abstractdraw": 1243, "welcom": [1245, 1247], "pypath": [1245, 1249, 1250], "instal": 1245, "faq": 1245, "impressum": 1245, "explor": [1245, 1247], "32": [1245, 1247], "31": [1245, 1247], "74": [1245, 1247], "93": 1245, "110": [1245, 1247], "upcom": 1245, "navig": 1245, "introduct": 1245, "app": [1245, 1246], "hmdb": 1245, "sanit": 1245, "quantit": 1245, "overview": 1245, "intercel": [1245, 1246, 1249, 1250], "log": [1245, 1246, 1249], "disabl": 1245, "bel": [1245, 1246, 1249], "quickli": 1245, "plai": 1245, "omnipathr": [1246, 1247], "popular": 1246, "yourself": 1246, "builder": 1246, "peopl": [1246, 1247], "satisfi": 1246, "realli": [1246, 1247], "fresh": [1246, 1247], "pypi": [1246, 1247], "pip": 1246, "git": 1246, "experienc": 1246, "platform": 1246, "biolog": [1246, 1247], "overal": [1246, 1247], "downlad": 1246, "alon": 1246, "begin": 1246, "fundament": [1246, 1247], "design": [1246, 1247], "principl": 1246, "todai": 1246, "enz_sub": [1246, 1247, 1250], "get_db": [1246, 1247], "easi": [1246, 1247], "prone": 1246, "truncat": [1246, 1247], "interrupt": 1246, "problemat": 1246, "possibli": [1246, 1247], "offlin": 1246, "fix": [1246, 1247, 1249], "standalon": [1246, 1247], "script": [1246, 1247], "varieti": [1246, 1247, 1250], "q01279": [1246, 1247], "run": [1246, 1247, 1250], "pyproject": 1246, "toml": 1246, "besid": [1246, 1247], "privat": 1246, "sensit": 1246, "omnipathdb": [1246, 1247, 1250], "gmail": 1246, "d\u00e9ne": 1246, "t\u00fcrei": 1246, "saez": 1246, "scientist": 1246, "erva": 1246, "ulusoi": 1246, "melih": 1246, "darcan": 1246, "\u00f6mer": 1246, "kaan": 1246, "vural": 1246, "tennur": 1246, "k\u0131l\u0131\u00e7": 1246, "elif": 1246, "\u00e7evrim": 1246, "b\u00fcnyamin": 1246, "\u015fen": 1246, "atabei": 1246, "\u00fcnl\u00fc": 1246, "mert": 1246, "erg\u00fcn": 1246, "hu": [1246, 1247], "pi": [1246, 1247], "tunca": 1246, "do\u011fan": 1246, "leila": 1246, "gul": 1246, "dezs\u0151": 1246, "m\u00f3do": 1246, "m\u00e1rton": 1246, "\u00f6lbei": 1246, "tam\u00e1": 1246, "korcsm\u00e1ro": 1246, "korcsmaro": 1246, "michael": 1246, "klein": 1246, "fabian": 1246, "charl": 1246, "taplei": 1246, "hoyt": 1246, "daniel": 1246, "domingo": 1246, "fern\u00e1ndez": 1246, "olga": 1246, "ivanova": 1246, "introduc": 1246, "sophia": 1246, "m\u00fcller": 1246, "dott": 1246, "nicol\u00e0": 1246, "palacio": 1246, "sebastian": 1246, "lobentanz": 1246, "ahmet": 1246, "rifaioglu": 1246, "mainten": [1246, 1247], "aurelien": 1246, "dugourd": 1246, "christina": 1246, "schmidt": 1246, "maintain": [1246, 1247], "francesco": 1246, "ceccarelli": 1246, "attila": 1246, "g\u00e1bor": 1246, "alberto": 1246, "valdeoliva": 1246, "logo": 1246, "jakob": 1246, "wirbel": 1246, "graphic": 1246, "spencer": 1246, "phillip": 1246, "bird": 1246, "ey": 1246, "16": 1247, "17": 1247, "18": 1247, "21": 1247, "bioconductor": 1247, "furthermor": 1247, "enjoi": 1247, "almost": [1247, 1249], "unlimit": 1247, "tour": 1247, "hesit": 1247, "__version__": 1247, "0m": 1247, "49": 1247, "47": 1247, "2023": 1247, "03": 1247, "09": 1247, "39": 1247, "36": 1247, "easiest": 1247, "quick": 1247, "34": 1247, "27": 1247, "2022": 1247, "lt": 1247, "databasemanag": 1247, "0x602fb851cd90": 1247, "gt": 1247, "tf_target": [1247, 1250], "mirna_mrna": 1247, "lncrna_mrna": 1247, "offer": [1247, 1249], "cu": 1247, "83": 1247, "7980": 1247, "35551": 1247, "1m": 1247, "55": 1247, "18558": 1247, "94358": 1247, "tft": 1247, "2m": 1247, "72": 1247, "54": 1247, "18986": 1247, "326708": 1247, "mi": 1247, "1264": 1247, "3288": 1247, "tmi": 1247, "41": 1247, "1032": 1247, "4960": 1247, "lnc": 1247, "33": 1247, "243": 1247, "217": 1247, "alloster": 1247, "smol": 1247, "94": 1247, "57": 1247, "1980": 1247, "3147": 1247, "41426": 1247, "co": 1247, "28173": 1247, "quit": 1247, "43": 1247, "60": 1247, "5490653": 1247, "50872": 1247, "68": 1247, "heavi": 1247, "ic": 1247, "37": 1247, "301527": 1247, "48570": 1247, "biomed": 1247, "troublesom": 1247, "broken": 1247, "daili": 1247, "signor_interact": 1247, "_interact": 1247, "_enz_sub": 1247, "_complex": 1247, "_annot": 1247, "fulli": 1247, "_raw": 1247, "_map": 1247, "bring": 1247, "observ": 1247, "repeat": 1247, "pattern": 1247, "arbitrarili": 1247, "toward": 1247, "straightforward": 1247, "outsid": 1247, "signor_complex": 1247, "complexaggreg": 1247, "p23511_p25208_q13952": 1247, "nfy": 1247, "p68104_p85299_q6r327_q8tb45_q9bvc4": 1247, "mtorc2": 1247, "p42345_q8n122_q8tb45_q96b36_q9bvc4": 1247, "mtorc1": 1247, "p63208_q13616_q9y297": 1247, "scf": 1247, "betatrcp": 1247, "q09472_q92793": 1247, "cbp": 1247, "p300": 1247, "q09472_q92793_q92831": 1247, "pcaf": 1247, "q13485_q15796": 1247, "smad2": [1247, 1250], "smad4": 1247, "p84022_q13485": 1247, "smad3": 1247, "p05412_q13485": 1247, "jun": 1247, "q15796_q9hau4": 1247, "smurf2": 1247, "o15105_q01094_q13547": 1247, "smad7": 1247, "hdac1": 1247, "e2f": 1247, "p19838_q04206": 1247, "nfkb": 1247, "p65": 1247, "p50": 1247, "o14920_o15111": 1247, "ik": 1247, "1000": 1247, "17699": 1247, "52": 1247, "signorinteract": 1247, "o15530": 1247, "source_isoform": 1247, "target_isoform": 1247, "source_typ": 1247, "target_typ": 1247, "10455013": 1247, "ptm_residu": 1247, "ser396": 1247, "ptm_motif": 1247, "sssssshslsasdtg": 1247, "q9nq66": 1247, "18035": 1247, "smallmolecul": 1247, "quantiti": 1247, "23880553": 1247, "catalysi": 1247, "p62136": 1247, "o15169": 1247, "down": 1247, "dephosphoryl": 1247, "17318175": 1247, "ser77": 1247, "yepegsasptppylk": 1247, "sou": 1247, "3285": 1247, "signor_enzyme_substr": 1247, "easier": 1247, "58": 1247, "396": 1247, "389": 1247, "403": 1247, "77": 1247, "70": 1247, "84": 1247, "final": 1247, "signor_pathway_annot": 1247, "practic": 1247, "o14733": 1247, "48": 1247, "signorpathwai": 1247, "tnf": 1247, "toll": 1247, "haven": 1247, "four": 1247, "signor_protein_famili": 1247, "pf2": 1247, "53": 1247, "q9hbw0": 1247, "q92633": 1247, "showcas": 1247, "metabol": 1247, "enzymat": 1247, "closer": 1247, "ramp_list_t": 1247, "51": 1247, "analyt": 1247, "rampid": 1247, "analytehasontologi": 1247, "rampcompoundid": 1247, "rampontologyid": 1247, "analytehaspathwai": 1247, "pathwayrampid": 1247, "pathwaysourc": 1247, "analytesynonym": 1247, "geneorcompound": 1247, "catalyz": 1247, "rampgeneid": 1247, "chem_prop": 1247, "ramp_id": 1247, "chem_data_sourc": 1247, "chem_source_id": 1247, "iso_smil": 1247, "inchi_key_prefix": 1247, "inchi_kei": 1247, "mw": 1247, "monoisotop_mass": 1247, "common_nam": 1247, "mol_formula": 1247, "db_version": 1247, "ramp_vers": 1247, "load_timestamp": 1247, "version_not": 1247, "met_intersects_json": 1247, "gene_intersects_json": 1247, "met_intersects_json_pw_map": 1247, "gene_intersects_json_pw_map": 1247, "db_sql_url": 1247, "entity_status_info": 1247, "status_categori": 1247, "entity_source_id": 1247, "entity_source_nam": 1247, "entity_count": 1247, "metabolite_class": 1247, "class_source_id": 1247, "class_level_nam": 1247, "class_nam": 1247, "commonnam": 1247, "hmdbontologytyp": 1247, "metcount": 1247, "pathwayr": 1247, "1368": 1247, "ramp_raw": 1247, "At": 1247, "bottleneck": 1247, "thank": 1247, "happen": 1247, "25": [1247, 1250], "sourceid": 1247, "priorityhmdbstatu": 1247, "datasourc": 1247, "pathwaycount": 1247, "hmdb0000001": 1247, "ramp_c_000000001": 1247, "methylhistidin": 1247, "quantifi": 1247, "hmdb0000479": 1247, "50599": 1247, "chemspid": 1247, "83153": 1247, "c01152": 1247, "hmdb_kegg": 1247, "756552": 1247, "h0ydb7": 1247, "ramp_g_000009307": 1247, "rab38": 1247, "wiki": 1247, "756553": 1247, "a0a024r191": 1247, "756554": 1247, "h0yea4": 1247, "756555": 1247, "23682": 1247, "756556": 1247, "gene_symbol": 1247, "756557": 1247, "physicochem": 1247, "00": 1247, "oc": 1247, "o": 1247, "brmwtnujhumwm": 1247, "lurjtmiesa": 1247, "c7h11n3o2": 1247, "169": 1247, "181": 1247, "085": 1247, "cc1": 1247, "cn1c": 1247, "jdhildinmrgul": 1247, "27596": 1247, "cn1cncc1c": 1247, "methyl": 1247, "histidin": 1247, "cn1cnc": 1247, "tele": 1247, "ramp_c_000000002": 1247, "hmdb0000002": 1247, "ncccn": 1247, "xfnjvjplkcpibv": 1247, "uhfffaoysa": 1247, "c3h10n2": 1247, "c4": 1247, "h1": 1247, "5h2": 1247, "1249": 1247, "0844": 1247, "diaminopropan": 1247, "275898": 1247, "ramp_c_000258279": 1247, "lipidmap": 1247, "lmpk15050003": 1247, "ccccccccccccc": 1247, "uxlmjhnfdrmgpw": 1247, "ljqanchmsa": 1247, "c24h38o6": 1247, "422": 1247, "267": 1247, "hydroxi": 1247, "methoxi": 1247, "2r": 1247, "acetoxi": 1247, "pentadecyl": 1247, "275899": 1247, "ramp_c_000258280": 1247, "lmpk15050004": 1247, "cc": 1247, "cvznklnahbtint": 1247, "jochjyfzsa": 1247, "c24h38o5": 1247, "406": 1247, "272": 1247, "benzoq": 1247, "275900": 1247, "ramp_c_000226089": 1247, "lmpk15050005": 1247, "ccccccccccc": 1247, "jiugzsypfredlg": 1247, "hxuwfjfhsa": 1247, "c22h34o5": 1247, "378": 1247, "241": 1247, "tridecyl": 1247, "benzoqui": 1247, "275901": 1247, "ramp_c_000258283": 1247, "lmpk15050008": 1247, "ccccccccccccccc": 1247, "gxdurrguxldzkn": 1247, "c21h34o4": 1247, "350": 1247, "246": 1247, "suberonon": 1247, "275902": 1247, "ramp_c_000258284": 1247, "lmpk15050009": 1247, "amknobhckrzhio": 1247, "c19h30o4": 1247, "322": 1247, "214": 1247, "rapanon": 1247, "275903": 1247, "advantag": 1247, "vice": 1247, "versa": 1247, "con": 1247, "56": 1247, "0x6fa1e9e4e940": 1247, "big": 1247, "format_byt": 1247, "python_memory_usag": 1247, "44": 1247, "list_column": 1247, "subqueri": 1247, "distinct": 1247, "ON": 1247, "read_sql_queri": 1247, "hmdb00001": 1247, "104129": 1247, "hmdb0126033": 1247, "25882": 1247, "104130": 1247, "hmdb0141947": 1247, "180150": 1247, "104131": 1247, "hmdb0128505": 1247, "7870": 1247, "104132": 1247, "hmdb0130984": 1247, "8227": 1247, "104133": 1247, "hmdb0130987": 1247, "8630": 1247, "104134": 1247, "Such": 1247, "ramp_map": 1247, "45": 1247, "brenda": 1247, "kegg_glycan": 1247, "lipidbank": 1247, "ncbiprotein": 1247, "plantfa": 1247, "swisslipid": 1247, "wikidata": 1247, "29": 1247, "lmfa00000008": 1247, "slm": 1247, "000390048": 1247, "lmfa01010001": 1247, "000000510": 1247, "lmfa01010002": 1247, "000000449": 1247, "lmfa01010003": 1247, "000001194": 1247, "lmfa01010004": 1247, "000001195": 1247, "lmfa01010005": 1247, "000389552": 1247, "lmfa01010006": 1247, "000001196": 1247, "lmfa01010007": 1247, "000389947": 1247, "lmfa01010008": 1247, "000000853": 1247, "lmfa01010010": 1247, "000000855": 1247, "lmfa01010011": 1247, "000389946": 1247, "lmfa01010012": 1247, "000000719": 1247, "lmfa01010013": 1247, "000001198": 1247, "lmfa01010014": 1247, "000000825": 1247, "lmfa01010015": 1247, "000001199": 1247, "lmfa01010017": 1247, "000001095": 1247, "lmfa01010019": 1247, "000001205": 1247, "lmfa01010020": 1247, "000000829": 1247, "lmfa01010021": 1247, "000001207": 1247, "lmfa01010022": 1247, "000000827": 1247, "lmfa01010023": 1247, "000001128": 1247, "lmfa01010024": 1247, "000000414": 1247, "lmfa01010026": 1247, "000000539": 1247, "lmfa01010027": 1247, "000000980": 1247, "lmfa01010028": 1247, "000000540": 1247, "lmfa01010030": 1247, "000000543": 1247, "lmfa01010032": 1247, "000000544": 1247, "lmfa01010034": 1247, "00000": 1247, "44684": 1247, "got": 1247, "63": 1247, "30": 1247, "lmst02030086": 1247, "000485328": 1247, "lmst02030087": 1247, "000485330": 1247, "lmsp06020013": 1247, "000000534": 1247, "lmst02020001": 1247, "000001055": 1247, "000485315": 1247, "35218": 1247, "lmpr0104010007": 1247, "000389242": 1247, "35219": 1247, "lmpr0104030005": 1247, "000390232": 1247, "35220": 1247, "lmpr0104030006": 1247, "000390227": 1247, "35221": 1247, "lmpr01070626": 1247, "000000432": 1247, "35222": 1247, "lmpr01090015": 1247, "000389419": 1247, "35223": 1247, "get_mapp": 1247, "38": 1247, "medchemexpress": 1247, "actor": 1247, "affymetrix": 1247, "alzforum": 1247, "alzforum_mut": 1247, "araport": 1247, "atla": [1247, 1250], "bindingdb": 1247, "carotenoiddb": 1247, "cas_id": 1247, "cgnc": 1247, "chemicalbook": 1247, "clinicaltri": 1247, "clinic": 1247, "7422": 1247, "input_class": 1247, "rampmap": 1247, "3238": 1247, "insight": 1247, "99": 1247, "131431": 1247, "hmdb0094709": 1247, "iter_metabolit": 1247, "04": 1247, "0x60b1846262c0": 1247, "direct_par": 1247, "kingdom": 1247, "sub_class": 1247, "molecular_framework": 1247, "alternative_par": 1247, "spectra": 1247, "spectrum": 1247, "spectrum_id": 1247, "biological_properti": 1247, "cellular_loc": 1247, "biospecimen_loc": 1247, "biospecimen": 1247, "tissue_loc": 1247, "kegg_map_id": 1247, "smpdb_id": 1247, "experimental_properti": 1247, "4037": 1247, "gene_properti": 1247, "chromosome_loc": 1247, "locu": 1247, "gene_sequ": 1247, "protein_properti": 1247, "residue_numb": 1247, "molecular_weight": 1247, "theoretical_pi": 1247, "polypeptide_sequ": 1247, "transmembrane_region": 1247, "signal_region": 1247, "pfam_id": 1247, "metabolite_associ": 1247, "go_classif": 1247, "go_class": 1247, "general_refer": 1247, "general_": 1247, "2072": 1247, "metabolites_raw": 1247, "proteins_raw": 1247, "cystein": 1247, "thereof": 1247, "carboxi": 1247, "hydrogen": 1247, "glycin": 1247, "heteroatom": 1247, "carboxyl": 1247, "analogu": 1247, "aromat": 1247, "heteromonocycl": 1247, "aralkylamin": 1247, "azacycl": 1247, "carbonyl": 1247, "heteroaromat": 1247, "hydrocarbon": 1247, "imidazolyl": 1247, "monoalkylamin": 1247, "monocarboxyl": 1247, "substitut": 1247, "imidazol": 1247, "oxid": 1247, "132354": 1247, "hmdb0000005": 1247, "ketobutyr": 1247, "hmdb0000008": 1247, "hydroxybutyr": 1247, "hmdb0000010": 1247, "methoxyestron": 1247, "hmdb0000011": 1247, "hmdb0000012": 1247, "deoxyuridin": 1247, "hmdb0000014": 1247, "deoxycytidin": 1247, "hmdb0000015": 1247, "cortexolon": 1247, "hmdb0000016": 1247, "deoxycorticosteron": 1247, "hmdb0000017": 1247, "pyridox": 1247, "hmdb0000019": 1247, "ketoisovaler": 1247, "hmdb0000020": 1247, "hydroxyphenylacet": 1247, "hmdb0000021": 1247, "iodotyrosin": 1247, "hmdb0000022": 1247, "methoxytyramin": 1247, "hmdb0000023": 1247, "hydroxyisobutyr": 1247, "hmdb00": 1247, "1291": 1247, "gene_nam": 1247, "nucleotidas": 1247, "nt5e": 1247, "deoxycytidyl": 1247, "deaminas": 1247, "dctd": 1247, "ump": 1247, "cmp": 1247, "cmpk1": 1247, "cytosol": 1247, "1b": 1247, "nt5c1b": 1247, "1a": 1247, "nt5c1a": 1247, "deoxyribonucleotidas": 1247, "nt5c": 1247, "dck": 1247, "mitochondri": 1247, "nt5m": 1247, "hydroxymethylglutaryl": 1247, "coa": 1247, "lyas": 1247, "hmgcl": 1247, "atp": 1247, "citrat": 1247, "synthas": 1247, "acli": 1247, "histon": 1247, "acetyltransferas": 1247, "ep300": 1247, "pyruv": 1247, "dehydrogenas": 1247, "e1": 1247, "subunit": 1247, "beta": 1247, "pdhb": 1247, "acetyl": [1247, 1250], "acat2": 1247, "creb": 1247, "crebbp": 1247, "diamin": 1247, "acetyltransf": 1247, "1478": 1247, "metabolites_t": 1247, "nameless": 1247, "_tabl": 1247, "nc": 1247, "ccc": 1247, "tyeybosbbbhjiv": 1247, "afendnxgafykqo": 1247, "vkhmyheasa": 1247, "12ccc": 1247, "c3": 1247, "wheuwnkscxykbu": 1247, "qpwughhjsa": 1247, "whbmmwsbfzvssr": 1247, "gsvougtgsa": 1247, "1o": 1247, "n1c": 1247, "nc1": 1247, "mxhrcpnrjammim": 1247, "shyzeuofsa": 1247, "1c": 1247, "o1": 1247, "cktsbutuhbmzgz": 1247, "12cc": 1247, "whbhbvvogneclv": 1247, "obqkjfggsa": 1247, "zesrjspzrdmnhi": 1247, "yfwfahhusa": 1247, "c1o": 1247, "hxacouqixzgnbf": 1247, "1h": 1247, "yl": 1247, "propanediamin": 1247, "propylenediamin": 1247, "ketobutano": 1247, "oxobutyr": 1247, "met": 1247, "hydroxybutano": 1247, "meth": 1247, "hydro": 1247, "du": 1247, "deo": 1247, "5r": 1247, "hydroxymet": 1247, "desoxi": 1247, "hydroxycorticosteron": 1247, "cortodoxo": 1247, "pregnen": 1247, "dion": 1247, "hydroxyp": 1247, "hydroxymethylp": 1247, "hmdb_synonym": 1247, "propano": 1247, "mhi": 1247, "n1": 1247, "dihydrochlorid": 1247, "prop": 1247, "291": 1247, "hydroxymethyl": 1247, "isonicotin": 1247, "292": 1247, "pyridoxin": 1247, "293": 1247, "pyridoxinecarboxyl": 1247, "294": 1247, "pyridoxyl": 1247, "295": 1247, "296": 1247, "grow": 1247, "taxonomy__alternative_par": 1247, "taxonomy__class": 1247, "taxonomy__descript": 1247, "taxonomy__direct_par": 1247, "taxonomy__kingdom": 1247, "taxonomy__molecular_framework": 1247, "taxonomy__sub_class": 1247, "taxonomy__substitu": 1247, "compoun": 1247, "kno": 1247, "amin": 1247, "aralkyla": 1247, "organopnictogen": 1247, "comp": 1247, "organonitrogen": 1247, "aliphat": 1247, "acycl": 1247, "keton": 1247, "keto": 1247, "ket": 1247, "fatti": 1247, "alcohol": 1247, "hy": 1247, "unsubstitut": 1247, "benzenoid": 1247, "oxo": 1247, "steroid": 1247, "homopolycycl": 1247, "estran": 1247, "oxost": 1247, "hyd": 1247, "pyrimidin": 1247, "nucleosid": 1247, "deoxyribonucleosid": 1247, "aminopyrimidin": 1247, "hydroxysteroid": 1247, "oxosteroid": 1247, "del": 1247, "delta": 1247, "carbo": 1247, "pyridin": 1247, "pyridinecarboxyl": 1247, "heteromon": 1247, "gave": 1247, "birth": 1247, "000": [1247, 1250], "2235": 1247, "vinylog": 1247, "organooxygen": 1247, "2236": 1247, "2237": 1247, "2238": 1247, "2239": 1247, "2240": 1247, "metabolites_map": 1247, "proteins_map": 1247, "c00109": 1247, "c00526": 1247, "c00847": 1247, "c00881": 1247, "c00986": 1247, "c01089": 1247, "c03205": 1247, "ccc2": 1247, "12c": 1247, "c05299": 1247, "c05488": 1247, "c05984": 1247, "pretti": 1247, "h3": 1247, "6h": 1247, "8h2": 1247, "1h3": 1247, "t6": 1247, "m0": 1247, "isom": 1247, "hydrid": 1247, "tau": 1247, "n3": 1247, "81": 1247, "figur": [1247, 1249], "hmdb_name": 1247, "esummari": 1247, "eutil": 1247, "6063": 1247, "uid": 1247, "gd": 1247, "gpl": 1247, "erank": 1247, "8esiq": 1247, "joaz": 1247, "diurnal": 1247, "circadian": 1247, "arabidopsi": 1247, "thaliana": 1247, "gdstype": 1247, "valtyp": 1247, "ratio": 1247, "idref": 1247, "genenam": 1247, "genedesc": 1247, "ugnam": 1247, "at4g11560": 1247, "ugdesc": 1247, "bromo": 1247, "adjac": 1247, "bah": 1247, "nucdesc": 1247, "9366": 1247, "lambda": 1247, "prl2": 1247, "cdna": 1247, "clone": 1247, "135j10t7": 1247, "entrez_gene_id": 1247, "gbacc": 1247, "t46103": 1247, "ptacc": 1247, "cloneid": 1247, "orf": 1247, "spotid": 1247, "vmin": 1247, "395000": 1247, "vmax": 1247, "201000": 1247, "a1b3c1": 1247, "abscal": 1247, "aflag": 1247, "aoutl": 1247, "rstd": 1247, "rmean": 1247, "get_pubm": 1247, "33209674": 1247, "42": 1247, "pubdat": 1247, "oct": 1247, "epubd": 1247, "transl": 1247, "androl": 1247, "urol": 1247, "kim": 1247, "authtyp": 1247, "clusterid": 1247, "lee": 1247, "sh": 1247, "dh": 1247, "jy": 1247, "hong": 1247, "ih": 1247, "lastauthor": 1247, "gemcitabin": 1247, "versu": 1247, "chemotherapi": 1247, "patient": 1247, "metastat": 1247, "urotheli": 1247, "carcinoma": 1247, "retrospect": 1247, "sorttitl": 1247, "volum": 1247, "2113": 1247, "2121": 1247, "lang": 1247, "eng": 1247, "2263": 1247, "epiderm": 1247, "growth": 1247, "currentid": 1247, "chromosom": 1247, "geneticsourc": 1247, "maploc": 1247, "7p11": 1247, "otheralias": 1247, "erbb": 1247, "erbb1": 1247, "errp": 1247, "her1": 1247, "nisbd2": 1247, "pig61": 1247, "mena": 1247, "otherdesign": 1247, "viii": 1247, "avian": 1247, "erythroblast": 1247, "leukemia": 1247, "viral": 1247, "erb": 1247, "oncogen": 1247, "prolifer": 1247, "61": 1247, "tyrosin": 1247, "b2": 1247, "proto": 1247, "nomenclaturesymbol": 1247, "nomenclaturenam": 1247, "nomenclaturestatu": 1247, "mim": 1247, "131550": 1247, "genomicinfo": 1247, "chrloc": 1247, "chraccver": 1247, "nc_000007": 1247, "chrstart": 1247, "55019016": 1247, "chrstop": 1247, "55211627": 1247, "exoncount": 1247, "geneweight": 1247, "580393": 1247, "5417": 1247, "90": 1247, "min": 1247, "dozen": [1247, 1250], "sooner": 1247, "accid": 1247, "cache_delete_on": 1247, "depod_enzyme_substr": 1247, "59": 1247, "cache_off": 1247, "cache_print_on": 1247, "dry_run_on": 1247, "debug_on": 1247, "curl_connect_timeout": 1247, "establish": 1247, "curl_extended_timeout": 1247, "exception": 1247, "curl_retri": 1247, "curl_timeout": 1247, "360": 1247, "deep": 1247, "stack": 1247, "investig": 1247, "difficult": 1247, "preserve_on": 1247, "depod_curl": 1247, "0x6947386dc8b0": 1247, "bioss": 1247, "uni": 1247, "freiburg": 1247, "de": 1247, "depod_201405_human_phosphatas": 1247, "mitab": 1247, "_io": 1247, "textiowrapp": 1247, "dene": 1247, "6a711369ecf9dcff8c5ed88996685b54": 1247, "iso": 1247, "8859": 1247, "okai": 1247, "wether": 1247, "successfulli": 1247, "night": 1247, "transient": 1247, "disappear": 1247, "perman": 1247, "mayb": 1247, "third": 1247, "parti": 1247, "lot": [1247, 1249], "notebook": 1247, "pypath_log": 1247, "s3e92": 1247, "535b06d53a59e75bb693369bc5fdc556": 1247, "112963": 1247, "verifi": 1247, "certif": 1247, "expir": 1247, "miss": 1247, "encrypt": 1247, "trust": 1247, "reach": [1247, 1248], "global": 1247, "comput": 1247, "program": 1247, "correctli": 1247, "duti": 1247, "procedur": 1247, "97": 1247, "cipher": 1247, "libcurl": 1247, "anaconda": 1247, "java": 1247, "mozilla": 1247, "firefox": 1247, "seriou": 1247, "rc": 1247, "get_control": 1247, "resourcecontrol": 1247, "0x6cc25e25dcf0": 1247, "BY": 1247, "sa": 1247, "pw_academ": 1247, "pw_commerci": 1247, "len": 1247, "pdzbase": 1247, "gplv3": 1247, "mit": 1247, "net_academ": 1247, "net_commerci": 1247, "79": 1247, "6833": 1247, "25607": 1247, "6429": 1247, "23288": 1247, "usabl": 1247, "400": 1247, "fine": 1247, "grain": 1247, "expert": 1247, "thought": 1247, "owner": 1247, "permiss": 1247, "pai": 1247, "fee": 1247, "product": 1247, "yearusedreleas": 1247, "2011": 1247, "bioinformat": 1247, "690": 1247, "d321": 1247, "suppl_1": 1247, "d235": 1247, "univ": 1247, "lyon1": 1247, "fr": 1247, "omictool": 1247, "tool": 1247, "19147664": 1247, "20852260": 1247, "25378329": 1247, "mammalia": 1247, "bairoch": 1247, "repor": 1247, "4479": 1247, "197": 1247, "collect_enzyme_substr": 1247, "08": 1247, "enzymesubstrateresourc": 1247, "phosphoelm": 1247, "li2012": 1247, "phosphonetwork": [1247, 1250], "mimp": 1247, "protmapp": 1247, "202": 1247, "phosphoelm_enzyme_substr": 1247, "larger": 1247, "netr": 1247, "deathdomain": 1247, "1864": 1247, "05": 1247, "7979": 1247, "35550": 1247, "8002": 1247, "35748": 1247, "older": 1247, "mentin": 1247, "focu": 1247, "constraint": 1247, "lncrna_protein": 1247, "06": 1247, "trpc1": 1247, "kcnma1": 1247, "ppp3ca": 1247, "calm2": 1247, "calm3": 1247, "calm1": 1247, "casp1": 1247, "casp4": 1247, "cacna1c": 1247, "cav1": 1247, "ev": 1247, "118492": 1247, "sync": 1247, "facilit": 1247, "p48995": 1247, "q12791": 1247, "q08209": 1247, "p29466": 1247, "p49662": 1247, "p56539": 1247, "cav3": 1247, "q14247": 1247, "cttn": 1247, "drd2": 1247, "p11532": 1247, "dmd": 1247, "fgfr1": 1247, "q02790": 1247, "fkbp4": 1247, "q86ym7": 1247, "homer1": 1247, "q9nsc5": 1247, "homer3": 1247, "q99750": 1247, "mdfi": 1247, "q14571": 1247, "itpr2": 1247, "q14573": 1247, "itpr3": 1247, "p29966": 1247, "marck": 1247, "grm1": 1247, "p20591": 1247, "mx1": 1247, "p62166": 1247, "ncs1": 1247, "q96d31": 1247, "orai1": 1247, "orai2": 1247, "q9brq5": 1247, "orai3": 1247, "p11171": 1247, "epb41": 1247, "p61586": 1247, "rhoa": 1247, "q9y225": 1247, "rnf24": 1247, "p21817": 1247, "ryr1": 1247, "p16615": 1247, "atp2a2": 1247, "q93084": 1247, "atp2a3": 1247, "p60880": 1247, "snap25": 1247, "q13586": 1247, "sti": 1247, "30573": 1247, "egf": 1247, "fantom5": 1247, "cellsign": 1247, "ia": 1247, "10085134": 1247, "10209155": 1247, "10788520": 1247, "12093292": 1247, "12297050": 1247, "12620237": 1247, "12648462": 1247, "15620700": 1247, "16274239": 1247, "17145710": 1247, "19531499": 1247, "20458382": 1247, "21071413": 1247, "23331499": 1247, "3494473": 1247, "6289330": 1247, "8639530": 1247, "get_": 1247, "_by_": 1247, "nan": 1247, "44033": 1247, "q14289": 1247, "q9ulz3": 1247, "44034": 1247, "p54646": 1247, "q9y2i7": 1247, "44035": 1247, "q9bxm7": 1247, "q9y2n7": 1247, "44036": 1247, "p49137": 1247, "q9y385": 1247, "44037": 1247, "q9uhc7": 1247, "p04637": 1247, "44038": 1247, "unique_pair": 1247, "65": 1247, "source_genesymbol": 1247, "target_genesymbol": 1247, "consensus_direct": 1247, "consensus_stimul": 1247, "consensus_inhibit": 1247, "19168436": 1247, "25139746": 1247, "23228564": 1247, "11290752": 1247, "11983166": 1247, "12601176": 1247, "36729": 1247, "ptk2b": 1247, "pycard": 1247, "27796369": 1247, "36730": 1247, "prkaa2": 1247, "pikfyv": 1247, "24070423": 1247, "36731": 1247, "pink1": 1247, "hif3a": 1247, "27551449": 1247, "36732": 1247, "mapkapk2": 1247, "ube2j1": 1247, "24020373": 1247, "36733": 1247, "mkrn1": 1247, "tp53": 1247, "19536131": 1247, "36734": 1247, "extra_node_attr": 1247, "customis": 1247, "webservice_interactions_df": 1247, "dorothea_tfb": 1247, "dorothea_coexp": 1247, "ncbi_tax_id_sourc": 1247, "entity_type_sourc": 1247, "ncbi_tax_id_target": 1247, "entity_type_target": 1247, "trip_method": 1247, "immunoprecipit": 1247, "fluoresc": 1247, "downstream": 1247, "benefici": 1247, "undesir": 1247, "grn": 1247, "network_allow_loop": 1247, "wish": 1247, "pw": 1247, "gr": 1247, "count_loop": 1247, "149": 1247, "33571": 1247, "281262": 1247, "topologi": [1247, 1250], "network_expand_complex": 1247, "fos_jun": 1247, "fos_junb": 1247, "fos_jund": 1247, "fosl1_jun": 1247, "fosl2_jun": 1247, "jun_junb": 1247, "jun_jund": 1247, "fosb_jun": 1247, "fosl1_junb": 1247, "fosl1_jund": 1247, "fosl2_junb": 1247, "fosl2_jund": 1247, "junb": 1247, "junb_jund": 1247, "fosb_junb": 1247, "jund": 1247, "fosb_jund": 1247, "nfkb1": 1247, "nfkb1_nfkb2": 1247, "nfkb1_relb": 1247, "nfkb1_rela": 1247, "nfkb1_rel": 1247, "nfkb2": 1247, "nfkb2_relb": 1247, "nfkb2_rela": 1247, "nfkb2_rel": 1247, "relb": 1247, "rela_relb": 1247, "rel_relb": 1247, "rela": 1247, "rel_rela": 1247, "rel": 1247, "cplex_ent": 1247, "q04206_q04864": 1247, "isinst": 1247, "p17535": 1247, "p15407": 1247, "p04040": 1247, "cat": 1247, "extri_collectri": 1247, "10022519": 1247, "10329043": 1247, "collectr": 1247, "p05412": 1247, "p15408": 1247, "p17275": 1247, "54980": 1247, "p01100": 1247, "p01270": 1247, "pth": 1247, "9989817": 1247, "54981": 1247, "54982": 1247, "p53539": 1247, "54983": 1247, "54984": 1247, "23235": 1247, "iloc": 1247, "p15407_p17535": 1247, "p01106": 1247, "o14746": 1247, "myc": 1247, "tert": 1247, "67945": 1247, "q01196": 1247, "q13094": 1247, "runx1": 1247, "lcp2": 1247, "67946": 1247, "q6mzq0": 1247, "prr5l": 1247, "67947": 1247, "q15672": 1247, "p08151": 1247, "twist1": 1247, "gli1": 1247, "67948": 1247, "p22415": 1247, "q5sre5": 1247, "usf1": 1247, "nup188": 1247, "67949": 1247, "q9uqr1": 1247, "q5vyx0": 1247, "znf148": 1247, "rnl": 1247, "67950": 1247, "familiar": 1247, "to_csv": 1247, "kinaseextra": [1247, 1250], "ligrecextra": [1247, 1250], "pathwayextra": [1247, 1250], "mirnatarget": [1247, 1250], "dorothea_cur": 1247, "dorothea_chipseq": 1247, "ncomplex": 1247, "12036993": 1247, "12538496": 1247, "17935786": 1247, "7489329": 1247, "7651432": 1247, "7818486": 1247, "8867782": 1247, "9030359": 1247, "9136992": 1247, "9142914": 1247, "9168892": 1247, "9687385": 1247, "p05412_p15408": 1247, "extri_c": 1247, "1004": 1247, "gabarapl3": 1247, "q9by60": 1247, "shortcut": 1247, "id_from_label": 1247, "o75385": 1247, "ulk1": [1247, 1250], "id_from_label0": 1247, "certainli": 1247, "q15796": 1247, "q62432": 1247, "8408": 1247, "autumn": 1247, "uniprotmap": 1247, "uploadlist": 1247, "outdat": 1247, "inputs_format": 1247, "uniprotlistmap": 1247, "biomartmap": 1247, "arraymap": 1247, "promap": 1247, "unichemmap": 1247, "filemap": 1247, "hmdbmap": 1247, "fly": 1247, "dispatch": 1247, "geneid": 1247, "input_cl": 1247, "29850": 1247, "eas": 1247, "ac_queri": 1247, "ac_map": 1247, "biomart_map": 1247, "pro_map": 1247, "array_map": 1247, "bigg": 1247, "biocyc": 1247, "cas_registry_numb": 1247, "ch": 1247, "8561": 1247, "tbl": 1247, "20243": 1247, "q00604": 1247, "ndp": 1247, "q9hb19": 1247, "plekha2": 1247, "q16718": 1247, "ndufa5": 1247, "p55769": 1247, "snu13": 1247, "q92886": 1247, "neurog1": 1247, "q6t4r5": 1247, "nh": 1247, "lcn2": 1247, "q86xr2": 1247, "fam129c": 1247, "q5t2w1": 1247, "pdzk1": 1247, "q9bsh3": 1247, "nicn1": 1247, "20375": 1247, "q96l92": 1247, "snx27": 1247, "20376": 1247, "q9unh6": 1247, "snx7": 1247, "20377": 1247, "q5vwj9": 1247, "snx30": 1247, "20378": 1247, "siglec1": 1247, "20379": 1247, "q96bd0": 1247, "slco4a1": 1247, "20380": 1247, "human_mouse_genesymbol": 1247, "confdenc": 1247, "omaortholog": 1247, "12704": 1247, "5703125": 1247, "h4c3": 1247, "h4c1": 1247, "1262": 1247, "050049": 1247, "h4c12": 1247, "h4c11": 1247, "h4c9": 1247, "18446": 1247, "gdap2": 1247, "5553": 1247, "779785": 1247, "18447": 1247, "itga8": 1247, "10772": 1247, "969727": 1247, "18448": 1247, "sema3f": 1247, "9121": 1247, "080078": 1247, "18449": 1247, "eepd1": 1247, "5874": 1247, "350098": 1247, "18450": 1247, "drg2": 1247, "4423": 1247, "589844": 1247, "18451": 1247, "everywher": 1247, "deal": 1247, "hsapien": 1247, "ensmebl": 1247, "hsa": 1247, "ensure_ncbi_tax_id": 1247, "ensure_latin_nam": 1247, "cow": 1247, "bo": 1247, "tauru": 1247, "ensure_common_nam": 1247, "erithacu": 1247, "rubecula": 1247, "european": 1247, "robin": 1247, "uniprot_taxid": 1247, "p53104": 1247, "saccharomyc": 1247, "cerevisia": 1247, "divers": 1247, "essenti": 1247, "harbor": 1247, "littl": 1247, "119": 1247, "iuniprot": 1247, "all_swissprot": 1247, "all_trembl": 1247, "3m": 1247, "86440": 1247, "17131": 1247, "69300": 1247, "a0a8d0h0c2": 1247, "inde": 1247, "125": 1247, "is_uniprot": 1247, "122": 1247, "is_swissprot": 1247, "123": 1247, "126": 1247, "protein_datasheet": 1247, "egfr_human": 1247, "1210": 1247, "o00688": 1247, "o00732": 1247, "p06268": 1247, "q14225": 1247, "q68gs5": 1247, "q92795": 1247, "q9bzs2": 1247, "q9gzx1": 1247, "q9h2c9": 1247, "q9h3c9": 1247, "q9umd7": 1247, "q9umd8": 1247, "q9umg5": 1247, "dt": 1247, "jul": 1247, "1986": 1247, "nov": 1247, "1997": 1247, "283": 1247, "recnam": 1247, "eco": 1247, "0000305": 1247, "altnam": 1247, "flag": 1247, "precursor": 1247, "gn": 1247, "0000312": 1247, "3236": 1247, "eukaryota": 1247, "metazoa": 1247, "chordata": 1247, "craniata": 1247, "vertebrata": 1247, "euteleostomi": 1247, "eutheria": 1247, "euarchontoglir": 1247, "primat": 1247, "haplorrhini": 1247, "catarrhini": 1247, "hominida": 1247, "ox": 1247, "ncbi_taxid": 1247, "rn": 1247, "rp": 1247, "nucleotid": 1247, "58080": 1247, "131": 1247, "egfr_histori": 1247, "uniprot_histori": 1247, "uniprotrecordhistori": 1247, "2022_04": 1247, "282": 1247, "2022_03": 1247, "281": 1247, "2022_02": 1247, "280": 1247, "2022_01": 1247, "279": 1247, "2021_04": 1247, "2021": 1247, "278": 1247, "50933": 1247, "132": 1247, "uniprot_recent_vers": 1247, "133": 1247, "uniprot_history_recent_datasheet": 1247, "deploi": 1247, "transit": 1247, "uniprot_data": 1247, "uniprot_queri": 1247, "situat": 1247, "uniprot_preprocess": 1247, "clutter": 1247, "a0a087x1c5": 1247, "cytochrom": 1247, "p450": 1247, "a0a0b4j2f2": 1247, "superfamili": 1247, "camk": 1247, "ser": 1247, "thr": 1247, "ampk": 1247, "a0a0k2s4q6": 1247, "cd300": 1247, "a0a1b0gtw7": 1247, "peptidas": 1247, "m8": 1247, "a0av02": 1247, "slc12a": 1247, "transport": 1247, "a0av96": 1247, "rrm": 1247, "rbm47": 1247, "a0avf1": 1247, "ift56": 1247, "a0avi4": 1247, "tmem129": 1247, "a0avk6": 1247, "dp": 1247, "a0avt1": 1247, "ubiquitin": [1247, 1250], "a0fgr8": 1247, "synaptotagmin": 1247, "a0fgr9": 1247, "a0jlt2": 1247, "mediat": 1247, "a0jp26": 1247, "pote": 1247, "a0mz66": 1247, "shootin": 1247, "a0pjk1": 1247, "sodium": 1247, "symport": 1247, "ssf": 1247, "tc": 1247, "a0pjy2": 1247, "krueppel": 1247, "c2h2": 1247, "zinc": 1247, "finger": 1247, "a0pk00": 1247, "tmem120": 1247, "a0pk11": 1247, "clarin": 1247, "a1a4y4": 1247, "trafac": 1247, "dynamin": 1247, "gtpase": 1247, "irg": 1247, "a1a519": 1247, "fam170": 1247, "a1a5b4": 1247, "anoctamin": 1247, "a1a5c7": 1247, "orga": 1247, "510530": 1247, "uiprot": 1247, "funcion": 1247, "up000004102": 1247, "d1ym56": 1247, "d1ymj2": 1247, "d1yn32": 1247, "d1ynb3": 1247, "d1ypz1": 1247, "d1yr07": 1247, "d1yr15": 1247, "d1yr93": 1247, "d1yrb4": 1247, "d1yrb7": 1247, "cleaner": 1247, "imperfect": 1247, "job": 1247, "badli": 1247, "136": 1247, "uniprot_taxonomi": 1247, "p00521": 1247, "abelson": 1247, "murin": 1247, "viru": 1247, "p03333": 1247, "h8zm73": 1247, "abi": 1247, "balsamea": 1247, "balsam": 1247, "fir": 1247, "pinu": 1247, "h8zm71": 1247, "q9mv51": 1247, "firma": 1247, "momi": 1247, "o81086": 1247, "grandi": 1247, "grand": 1247, "o24474": 1247, "o24475": 1247, "o64404": 1247, "o64405": 1247, "q948z0": 1247, "q9m7d1": 1247, "q9m7d0": 1247, "o22340": 1247, "q9m7c9": 1247, "q5k3v1": 1247, "homolepi": 1247, "nikko": 1247, "p21715": 1247, "abrothrix": 1247, "jelskii": 1247, "akodon": 1247, "jelski": 1247, "altiplano": 1247, "p11140": 1247, "abru": 1247, "56985": 1247, "139": 1247, "uniprot_ncbi_taxids_2": 1247, "648330": 1247, "aed": 1247, "albopictu": 1247, "densoviru": 1247, "isol": 1247, "boublik": 1247, "1994": 1247, "aaldnv": 1247, "10804": 1247, "adeno": 1247, "aav": 1247, "648242": 1247, "srivastava": 1247, "1982": 1247, "118452": 1247, "abacion": 1247, "magnum": 1247, "milliped": 1247, "72259": 1247, "abaei": 1247, "nicipp": 1247, "sleepi": 1247, "orang": 1247, "butterfli": 1247, "eurema": 1247, "102642": 1247, "abax": 1247, "parallelepipedu": 1247, "ground": 1247, "beetl": 1247, "392897": 1247, "abalist": 1247, "stellari": 1247, "starri": 1247, "triggerfish": 1247, "balist": 1247, "75332": 1247, "abbottina": 1247, "rivulari": 1247, "chines": 1247, "gudgeon": 1247, "gobio": 1247, "515833": 1247, "abdopu": 1247, "aculeatu": 1247, "engl": 1247, "118050": 1247, "140": 1247, "uniprot_loc": 1247, "q96ec8": 1247, "uniprotloc": 1247, "golgi": 1247, "apparatu": 1247, "q6zms4": 1247, "nucleu": 1247, "q8n8l2": 1247, "q15916": 1247, "q3mis6": 1247, "q6p280": 1247, "q969w1": 1247, "endoplasm": 1247, "reticulum": 1247, "o14978": 1247, "q66k41": 1247, "q15937": 1247, "q9p2j8": 1247, "q8nd82": 1247, "q9np64": 1247, "nucleolu": 1247, "143466": 1247, "141": 1247, "uniprot_keyword": 1247, "p63120": 1247, "uniprotkeyword": 1247, "aspartyl": 1247, "proteas": 1247, "autocatalyt": 1247, "cleavag": 1247, "erv": 1247, "hydrolas": 1247, "ribosom": 1247, "frameshift": 1247, "transpos": 1247, "splice": 1247, "helix": 1247, "metal": 1247, "unipro": 1247, "445111": 1247, "142": 1247, "uniprot_famili": 1247, "uniprotfamili": 1247, "a2": 1247, "herv": 1247, "hml": 1247, "yip1": 1247, "q86uk7": 1247, "znf598": 1247, "dhhc": 1247, "palmitoyltransferas": 1247, "q8iuh4": 1247, "77892": 1247, "143": 1247, "uniprot_tissu": 1247, "uniprottissu": 1247, "brain": 1247, "colon": 1247, "heart": 1247, "kidnei": 1247, "leukocyt": 1247, "liver": 1247, "lung": 1247, "ovari": 1247, "pancrea": 1247, "placenta": 1247, "prostat": 1247, "skelet": 1247, "muscl": [1247, 1250], "intestin": 1247, "spleen": 1247, "testi": 1247, "318790": 1247, "144": 1247, "uniprot_topologi": 1247, "uniprottopologi": 1247, "cytoplasm": 1247, "137": 1247, "146": 1247, "206": 1247, "212": 1247, "lumen": 1247, "106": 1247, "115": 1247, "168": 1247, "184": 1247, "234": 1247, "236": 1247, "85": 1247, "105": 1247, "116": 1247, "147": 1247, "167": 1247, "185": 1247, "205": 1247, "213": 1247, "233": 1247, "138": 1247, "198": 1247, "288": 1247, "377": 1247, "220": 1247, "544230": 1247, "bulk": 1247, "153": 1247, "q14457": 1247, "becn1": 1247, "154": 1247, "156": 1247, "subcellular_loc": 1247, "112631": 1247, "1050": 1247, "preautophagosom": 1247, "starvat": 1247, "puncat": 1247, "primarili": 1247, "sequest": 1247, "portion": 1247, "autophagosom": 1247, "mepgrggtetvgkfefsrkdlighgafavvfkgrhrekhdlevavkcinkknlaksqtllgkeikilkelkhenivalydfqemansvylvmeycnggdladylhamrtlsedtirlflqqiagamrllhskgiihrdlkpqnillsnpagrranpnsirvkiadfgfarylqsnmmaatlcgspmymapevimsqhydgkadlwsigtivyqcltgkapfqasspqdlrlfyeknktlvptipretsaplrqlllallqrnhkdrmdfdeffhhpfldaspsvrksppvpvpsypssgsgssssssstshlasppslgemqqlqktlaspadtagflhssrdsggskdsscdtddfvmvpaqfpgdlvaeapsakpppdslmcsgsslvasagleshgrtpspsppcssspspsgragpfsssrcgasvpipvptqvqnyqriernlqsptqfqtprssairrsgstsplgfaraspsppahaehggvlarkmslgggrpytpspqvgtiperpgwsgtpspqgaemrggrsprpgssapehsprtsglgcrlhsapnlsdlhvvrpklpkpptdplgavfsppqasppqpshglqscrnlrgspklpdflqrnplppilgsptkavpsfdfpktpssqnllallarqgvvmtpprnrtlpdlsevgpfhgqplgpglrpgedpkgpfgrsfstsrltdlllkaafgtqapdpgsteslqek": 1247, "1329": 1247, "ineffici": 1247, "hand": 1247, "158": 1247, "134277": 1247, "51896": 1247, "450": 1247, "159": 1247, "There": 1247, "character": 1247, "160": 1247, "function_o": 1247, "subcellula": 1247, "r_genecard": 1247, "r_locat": 1247, "alternativ": 1247, "20254": 1247, "exploit": 1247, "162": 1247, "q9uq28": 1247, "8m": 1247, "acquir": 1247, "mtor": [1247, 1250], "s473": 1247, "sparser": 1247, "t450": 1247, "t308": 1247, "e_ptm": 1247, "473": 1247, "14761976": 1247, "15047712": 1247, "15364915": 1247, "15718470": 1247, "15899889": 1247, "16221682": 1247, "17013611": 1247, "19844585": 1247, "20333297": 1247, "20489726": 1247, "21157483": 1247, "21592956": 1247, "23006971": 1247, "8978681": 1247, "9736715": 1247, "dabas": 1247, "p63104": 1247, "ywhaz": 1247, "hprd_mimp": 1247, "11956222": 1247, "12861023": 1247, "phosphosite_mimp": 1247, "phosp": 1247, "15071501": 1247, "p45983": 1247, "mapk8": 1247, "phosph": 1247, "15696159": 1247, "p06493": 1247, "cdk1": 1247, "712": 1247, "rea": 1247, "15525677": 1247, "18220": 1247, "2171679": 1247, "41421": 1247, "p29597": 1247, "tyk2": 1247, "p51692": 1247, "stat5b": 1247, "699": 1247, "10830280": 1247, "11751923": 1247, "12411494": 1247, "41422": 1247, "q06418": 1247, "tyro3": 1247, "p19174": 1247, "plcg1": 1247, "771": 1247, "12601080": 1247, "15144186": 1247, "15592455": 1247, "41423": 1247, "q9h4a3": 1247, "wnk1": 1247, "q8tax0": 1247, "osr1": 1247, "18270262": 1247, "41424": 1247, "q96j92": 1247, "wnk4": 1247, "335": 1247, "15883153": 1247, "41425": 1247, "q9nyl2": 1247, "map3k20": 1247, "q92903": 1247, "cds1": 1247, "10973490": 1247, "ve": 1247, "power": 1247, "believ": 1247, "ever": 1247, "topic": 1247, "186": 1247, "seqc": 1247, "get_seq": 1247, "get_region": 1247, "tfiirclqwt": 1247, "187": 1247, "human_proteom": 1247, "swissprot_seq": 1247, "0x689900d45cc0": 1247, "0x689908ea8f70": 1247, "0x689908eaa4a0": 1247, "0x6899223538b0": 1247, "0x689922353c70": 1247, "o60384": 1247, "0x689922350730": 1247, "0x689922353310": 1247, "0x689922353760": 1247, "0x689922353190": 1247, "0x689922350d90": 1247, "0x689922353220": 1247, "p61129": 1247, "0x689922353370": 1247, "0x6899223534f0": 1247, "0x689922350c70": 1247, "0x689922351450": 1247, "0x689922353910": 1247, "0x6899223502b0": 1247, "p98182": 1247, "0x689922350280": 1247, "0x68992235": 1247, "53045": 1247, "191": 1247, "ygct": 1247, "seqlookup": 1247, "625": 1247, "annotationt": 1247, "3788067": 1247, "51636": 1247, "78": 1247, "cpad": 1247, "2308": 1247, "1358": 1247, "regulator_typ": 1247, "effect_on_pathwai": 1247, "effect_on_canc": 1247, "effect_on_cancer_outcom": 1247, "pathway_categori": 1247, "acut": 1247, "lymphoblast": 1247, "myeloid": 1247, "aml": 1247, "basal": 1247, "bladder": 1247, "breast": 1247, "cervic": 1247, "cholangiocarcinoma": 1247, "choriocarcinoma": 1247, "chronic": 1247, "lymphocyt": 1247, "cll": 1247, "cml": 1247, "colorect": 1247, "endometri": 1247, "esophag": 1247, "ew": 1247, "sarcoma": 1247, "gallbladd": 1247, "gastric": 1247, "glioma": 1247, "hepatocellular": 1247, "hodgkin": 1247, "lymphoma": 1247, "infantil": 1247, "hemangioma": 1247, "laryng": 1247, "malign": 1247, "melanoma": 1247, "pleural": 1247, "mesothelioma": 1247, "mantl": 1247, "myeloma": 1247, "nasopharyng": 1247, "neuroblastoma": 1247, "oral": 1247, "osteosarcoma": 1247, "ovarian": 1247, "pancreat": 1247, "pituitari": 1247, "adenoma": 1247, "renal": 1247, "squamou": 1247, "synovi": 1247, "testicular": 1247, "thyroid": 1247, "a6ndv4": 1247, "o14745": 1247, "o14862": 1247, "o15169_p25054": 1247, "o94813": 1247, "o94953": 1247, "p06733": 1247, "glucos": 1247, "p11166": 1247, "p25054": 1247, "p40261": 1247, "p49327": 1247, "p54687": 1247, "pten": 1247, "p60484": 1247, "q01973": 1247, "q12888": 1247, "q13620": 1247, "q96cx2": 1247, "q99558": 1247, "mimat0000069": 1247, "mimat0000089": 1247, "mimat0000093": 1247, "mimat0000262": 1247, "mimat0000274": 1247, "mimat0000422": 1247, "mimat0000427": 1247, "mimat0000437": 1247, "mimat0000449": 1247, "mimat0000455": 1247, "mimat0000460": 1247, "mimat0000461": 1247, "mimat0000617": 1247, "mimat0003266": 1247, "mimat0003320": 1247, "o75473": 1247, "o75888": 1247, "o76041": 1247, "p13631": 1247, "p22676": 1247, "p25791": 1247, "p546": 1247, "1279": 1247, "celltypist": 1247, "927": 1247, "62": 1247, "cellcellinteract": 1247, "5544": 1247, "8479": 1247, "4813": 1247, "lambert2018": 1247, "3281": 1247, "3277": 1247, "cancersea": 1247, "2515": 1247, "1992": 1247, "phobiu": 1247, "35382": 1247, "go_intercel": 1247, "48799": 1247, "18377": 1247, "18127": 1247, "15903": 1247, "surfaceom": 1247, "3558": 1247, "matrisom": 1247, "1514": 1247, "hpa_secretom": 1247, "3568": 1247, "1748": 1247, "1695": 1247, "annotati": 1247, "5842": 1247, "exempl": 1247, "mainclass": 1247, "subsubclass": 1247, "collagen": 1247, "glycoprotein": 1247, "affili": 1247, "proteoglycan": 1247, "a6nmz7": 1247, "a8tx70": 1247, "b4dz39": 1247, "homotrim": 1247, "ht_dm_cluster278": 1247, "p02452_p02462_p08572_p29400_p53420_q01955_q02388_q14031_q17rw2_q8nfw1": 1247, "trimer": 1247, "p02452_p08123": 1247, "xi": 1247, "p02458_p12107_p13942": 1247, "p02458_p20908_p25067": 1247, "p02458_p20908_p25067_p29400": 1247, "p02458_p25067_p29400": 1247, "iv": 1247, "p02462_p08572": 1247, "p05997_p12107": 1247, "p05997_p12107_p20908": 1247, "p05997_p20908": 1247, "p05997_p20908_p25940": 1247, "p12109_p12110": 1247, "3072": 1247, "membership": 1247, "signalinkpathwai": 1247, "keggpathwai": 1247, "netpathpathwai": 1247, "28745": 1247, "6762": 1247, "jak": 1247, "stat": 1247, "actin": 1247, "cytoskeleton": 1247, "oxytocin": 1247, "phospholipas": 1247, "inhibitor": 1247, "resist": 1247, "papillomaviru": 1247, "infect": 1247, "carbon": 1247, "endocytosi": 1247, "cholin": 1247, "parathyroid": 1247, "synthesi": 1247, "2540": 1247, "record_id": [1247, 1250], "q16181": 1247, "sept7": 1247, "upregul": 1247, "migrat": 1247, "14396": 1247, "p30990": 1247, "nt": 1247, "2306": 1247, "14397": 1247, "2307": 1247, "14398": 1247, "erk": 1247, "14399": 1247, "14400": 1247, "14401": 1247, "convent": 1247, "tidyvers": 1247, "tidyr": [1247, 1250], "pivot_wid": 1247, "unintuit": 1247, "index_col": 1247, "axi": 1247, "set_index": 1247, "unstack": 1247, "droplevel": 1247, "reset_index": 1247, "mimat0000431": 1247, "mir": 1247, "tumor": 1247, "invas": 1247, "adam10": 1247, "notch1": [1247, 1250], "notch": 1247, "mimat0005886": 1247, "1297": 1247, "aeg1": 1247, "wnt": 1247, "q9up65": 1247, "pla2g4c": 1247, "chemotaxi": 1247, "downregul": 1247, "akt": 1247, "pi3k": 1247, "q92600": 1247, "cnot9": 1247, "2303": 1247, "epcam": 1247, "2304": 1247, "q9y6y0": 1247, "ivns1abp": 1247, "2305": 1247, "kctd12": 1247, "catenin": 1247, "anyon": 1247, "intercellannot": 1247, "310033": 1247, "43617": 1247, "annot_combined_class": 1247, "revis": 1247, "tgf": 1247, "annotdefkei": 1247, "annotationgroup": 1247, "5150": 1247, "5760": 1247, "7041": 1247, "transmembrane_predict": 1247, "6444": 1247, "transmembrane_phobiu": 1247, "almen2009": 1247, "transmembrane_sosui": 1247, "1663": 1247, "tran": 1247, "143945": 1247, "gaba_receptor": 1247, "gaba": 1247, "a8mpy1": 1247, "gabra1": 1247, "gabrb2": 1247, "gabrd": 1247, "o14764_p14867_p47870": 1247, "o14764_p28472_p48169": 1247, "o14764_p28472_q16445": 1247, "o14764_p47870_p48169": 1247, "o14764_p47870_q16445": 1247, "gabbr1": 1247, "gabbr2": 1247, "o75899_q9ubs5": 1247, "p14867": 1247, "gamma": 1247, "p14867_p18507_p28472": 1247, "gabrg2": 1247, "p14867_p18507_p47870": 1247, "p18507_p28472_p31644": 1247, "p18507_p28472_p34903": 1247, "p18507_p28472_p47869": 1247, "p18507_p28472_q16445": 1247, "p18507_q8n1c3": 1247, "counts_df": 1247, "consensus_scor": 1247, "plasma_membrane_transmembran": 1247, "plasma_membrane_peripher": 1247, "n_uniprot": 1247, "1120": 1247, "parin_adhesion_regul": 1247, "intracellular_intercellular_rel": 1247, "1121": 1247, "plakophilin_adhesion_regul": 1247, "1122": 1247, "actin_regulation_adhesom": 1247, "1123": 1247, "adhesion_cytoskeleton_adaptor": 1247, "118": 1247, "1124": 1247, "1125": 1247, "q96jp9": 1247, "cdhr1": 1247, "q9p126": 1247, "clec1b": 1247, "q13585": 1247, "gpr50": 1247, "q8n9i0": 1247, "syt2": 1247, "o43614": 1247, "hcrtr2": 1247, "a6njy1": 1247, "slc9b1p1": 1247, "q5ri15": 1247, "cox20": 1247, "q13948": 1247, "cux1": 1247, "q8ngk4": 1247, "or52k1": 1247, "q8iys2": 1247, "kiaa2013": 1247, "neurotensin": 1247, "recom": 1247, "o95665": 1247, "ntsr2": 1247, "410": 1247, "45385": 1247, "neurotensi": 1247, "tr": 1247, "idecapepti": 1247, "disulfid": 1247, "7598": 1247, "80": 1247, "0x689946b55570": 1247, "82": 1247, "0x68991cdc9b40": 1247, "NOT": 1247, "p21333": 1247, "p80108": 1247, "p62258": 1247, "q9nrx4": 1247, "p54710": 1247, "q8ner1": 1247, "0001507": 1247, "0001527": 1247, "0003351": 1247, "0003355": 1247, "0005201": 1247, "0005577": 1247, "0005582": 1247, "0005583": 1247, "0005584": 1247, "0005585": 1247, "0005586": 1247, "0005587": 1247, "0005588": 1247, "0005590": 1247, "0005591": 1247, "0005592": 1247, "0005595": 1247, "0005596": 1247, "0005599": 1247, "0005601": 1247, "0005602": 1247, "0005604": 1247, "0005606": 1247, "0005607": 1247, "0005608": 1247, "0005609": 1247, "0005610": 1247, "0005611": 1247, "0005612": 1247, "0005614": 1247, "0005615": 1247, "0005616": 1247, "0006858": 1247, "0006859": 1247, "0006860": 1247, "0009519": 1247, "0010367": 1247, "0016914": 1247, "0016942": 1247, "0020003": 1247, "0020004": 1247, "0020005": 1247, "0020006": 1247, "0030020": 1247, "0030021": 1247, "0030023": 1247, "0030197": 1247, "0030345": 1247, "0030934": 1247, "0030935": 1247, "0030938": 1247, "0031012": 1247, "0031395": 1247, "0032311": 1247, "0032579": 1247, "0033165": 1247, "0033166": 1247, "0034358": 1247, "0034359": 1247, "0034360": 1247, "0034361": 1247, "0034362": 1247, "0034363": 1247, "0034364": 1247, "0034365": 1247, "00343": 1247, "3104": 1247, "homomultim": 1247, "update_index": 1247, "91": 1247, "p42345": [1247, 1250], "o00141_o15530_o75879_p23443_p34931_p42345_q6r327_q8n122_q9bpz7_q9bvc4_q9h672": 1247, "o00141_o15530_p07900_p23443_p31749_p31751_p42345_p78527_q05513_q05655_q6r327_q8n122_q9bpz7_q9bvc4": 1247, "o00141_o15530_p0cg47_p0cg48_p23443_p42345_q15118_q6r327_q8n122_q96br1_q9bpz7_q9bvc4": 1247, "o00141_o15530_p23443_p42345_q15118_q6r327_q8n122_q96br1_q96j02_q9bpz7_q9bvc4": 1247, "o00141_o75879_p0cg48_p23443_p34931_p42345_p62753_q6r327_q8n122_q9bpz7_q9bvc4_q9ny26": 1247, "o00141_p0cg48_p23443_p36894_p42345_p62942_p68106_q15427_q6r327_q8n122_q9bpz7_q9bvc4": 1247, "o00141_p0cg48_p23443_p42345_p46781_p62753_q6r327_q8n122_q96kq7_q9bpz7_q9bvc4_q9ny26": 1247, "o00141_p0cg48_p23443_p42345_p62753_p62942_q6r327_q8n122_q9bpz7_q9bvc4_q9ny26": 1247, "o00141_p0cg48_p23443_p42345_p62753_q15172_q6r327_q8iw41_q9bpz7_q9bvc4_q9h672": 1247, "o00141_p0cg48_p23443_p42345_p62753_q6r327_q70z35_q8n122_q8tcu6_q9bpz7": 1247, "5348": 1247, "equival": 1247, "despit": [1247, 1249], "98": 1247, "q92793": 1247, "q09472": 1247, "components_genesymbol": 1247, "nfya_nfyb_nfyc": 1247, "compleat": 1247, "complexport": 1247, "15243141": 1247, "14755292": 1247, "9372932": 1247, "4478": 1247, "hc1449": 1247, "deptor_eef1a1_mlst8_prr5_rictor": 1247, "akt1s1_deptor_mlst8_mtor_rptor": 1247, "btrc_cul1_skp1": 1247, "9990852": 1247, "227": 1247, "hc757": 1247, "crebbp_ep300": 1247, "c6": 1247, "28168": 1247, "npnt": 1247, "q5szk8_q6uxi9_q86xx4": 1247, "fras1_frem2_npnt": 1247, "28169": 1247, "nrp1_nrp2": 1247, "o14786_o60462_q9y4d7": 1247, "nrp1_nrp2_plxnd1": 1247, "28170": 1247, "nrp2_plxna2": 1247, "o60462_o75051": 1247, "28171": 1247, "nrp2_plxna4": 1247, "o60462_q9hcm2": 1247, "28172": 1247, "ptch2_smo": 1247, "q99835_q9y6c5": 1247, "good": 1247, "myannot": 1247, "complexdb": 1247, "mycomplex": 1247, "char": 1247, "xxxxx": 1247, "ten": 1247, "l0n17": 1247, "disclaim": 1247, "annoi": 1247, "101": 1247, "educ": 1247, "credit": 1247, "gnu": 1247, "104": 1247, "prioriti": 1247, "107": 1247, "console_level": 1247, "si": 1247, "download_complex": 1247, "d7b8673e83e43a01c533f9de5a2b04b9": 1247, "1046": 1247, "creation": 1247, "builtin": 1247, "shell": 1247, "dev": 1247, "108": 1247, "devnul": 1247, "notic": 1247, "109": 1247, "greet": 1247, "childoflogg": 1247, "say_someth": 1247, "_log": 1247, "anywher": 1247, "111": 1247, "_logger": 1247, "mylogg": 1247, "strai": 1247, "flood": 1247, "112": 1247, "hasn": 1247, "thoroughli": 1247, "scai": 1247, "fraunhof": 1247, "captur": 1247, "rang": 1247, "ptmaggreg": 1247, "belgraph": 1247, "bel_graph": 1247, "summar": 1247, "export_relationship": 1247, "omnipath_pathwai": 1247, "fp": 1247, "bel_str": 1247, "333": 1247, "interaction_input": 1247, "singnalink": 1247, "interaction_datafram": 1247, "protein_datafram": 1247, "load_omnipath": 1247, "worri": 1247, "network1": 1247, "entreza": 1247, "entrezb": 1247, "1950": 1247, "5290": 1247, "207": 1247, "2932": 1247, "network2": 1247, "pik3ca": 1247, "sos1": 1247, "rac1": 1247, "map3k1": 1247, "hra": 1247, "gsk3b": 1247, "iinput_format": 1247, "input1": 1247, "readset": 1247, "egf1": 1247, "input2": 1247, "egf2": 1247, "ecount": 1247, "vcount": 1247, "dgraph": 1247, "3241": 1247, "p17252": 1247, "q15139": 1247, "get_dir": 1247, "contradict": 1247, "decid": 1247, "rid": 1247, "helper": 1247, "plural": 1247, "gss": 1247, "atg16l2": 1247, "affect": 1247, "gs_stimulated_bi": 1247, "_namedvertexseq": 1247, "bit": 1247, "contraintuit": 1247, "gs_stimul": 1247, "affected_bi": 1247, "similari": 1247, "inhibited_bi": 1247, "gs_": 1247, "up_": 1247, "neighbor": 1247, "neighborhood": 1247, "rapidli": 1247, "atg3": [1247, 1250], "get_edg": 1247, "map1lc3b": [1247, 1250], "sqstm1": [1247, 1250], "refs_by_sourc": 1247, "abil": 1247, "librari": 1247, "egf_network": 1247, "png": 1247, "777777": 1247, "97be73": 1247, "ffffff": 1247, "bug": 1247, "ipython": 1247, "visibl": 1247, "inlin": 1247, "120": 1247, "imag": 1247, "click": 1248, "changelog": 1249, "improv": 1249, "remot": 1249, "partial": 1249, "pyreact": 1249, "rule": [1249, 1250], "mysql_connect": 1249, "python3": 1249, "websrvtab": 1249, "dataio": 1249, "docstr": 1249, "focus": 1249, "rewritten": 1249, "workaround": 1249, "terribl": 1249, "reflist": 1249, "becam": 1249, "paremet": 1249, "reorgan": 1249, "redesign": 1249, "yml": 1249, "neo4j": 1249, "backend": 1249, "biocyph": 1249, "dlmanag": 1249, "protocol": 1250, "wget": 1250, "whatev": 1250, "recogn": 1250, "webserv": 1250, "optimum": 1250, "interacion": 1250, "rodent": 1250, "omic": 1250, "arget": 1250, "source_target": 1250, "atg7": 1250, "atg4b": 1250, "map1lc3a": 1250, "map1lc3c": 1250, "q9h0r8": 1250, "gabarap": 1250, "gabarapl2": 1250, "appear": 1250, "fyn": 1250, "ens_sub": 1250, "phosphosite_noref": 1250, "hearth": 1250, "dplyr": 1250, "signalink_pathwai": 1250, "bmp7": 1250, "hpa_tissu": 1250, "funtion": 1250, "ion": 1250, "interleukin": 1250, "deliv": 1250, "exact": 1250, "atg4a": 1250, "bmp8b": 1250, "intuit": 1250, "repli": 1250}, "objects": {"": [[0, 0, 0, "-", "pypath"]], "pypath": [[1, 0, 0, "-", "core"], [150, 0, 0, "-", "data"], [151, 3, 1, "", "disclaimer"], [152, 3, 1, "", "info"], [153, 0, 0, "-", "inputs"], [953, 0, 0, "-", "internals"], [1001, 0, 0, "-", "legacy"], [1005, 3, 1, "", "log"], [1006, 0, 0, "-", "resources"], [1027, 0, 0, "-", "share"], [1056, 0, 0, "-", "utils"], [1222, 0, 0, "-", "visual"]], "pypath.core": [[2, 0, 0, "-", "annot"], [95, 0, 0, "-", "attrs"], [97, 0, 0, "-", "common"], [99, 0, 0, "-", "complex"], [121, 0, 0, "-", "entity"], [125, 0, 0, "-", "enz_sub"], [131, 0, 0, "-", "evidence"], [134, 0, 0, "-", "interaction"], [138, 0, 0, "-", "intercell"], [142, 0, 0, "-", "intercell_annot"], [144, 0, 0, "-", "network"]], "pypath.core.annot": [[3, 1, 1, "", "Adhesome"], [4, 1, 1, "", "Almen2009"], [5, 1, 1, "", "AnnotationBase"], [6, 1, 1, "", "AnnotationTable"], [7, 1, 1, "", "Baccin2019"], [8, 1, 1, "", "Biogps"], [9, 1, 1, "", "CancerGeneCensus"], [10, 1, 1, "", "Cancerdrugsdb"], [11, 1, 1, "", "Cancersea"], [12, 1, 1, "", "CellPhoneDB"], [13, 1, 1, "", "CellPhoneDBComplex"], [14, 1, 1, "", "CellSurfaceProteinAtlas"], [15, 1, 1, "", "CellSurfaceProteinAtlasCellType"], [16, 1, 1, "", "Cellcall"], [17, 1, 1, "", "Cellcellinteractions"], [18, 1, 1, "", "Cellchatdb"], [19, 1, 1, "", "CellchatdbComplex"], [20, 1, 1, "", "Cellinker"], [21, 1, 1, "", "CellinkerComplex"], [22, 1, 1, "", "Celltalkdb"], [23, 1, 1, "", "Celltypist"], [24, 1, 1, "", "Comppi"], [25, 1, 1, "", "Connectomedb"], [26, 1, 1, "", "Corum"], [27, 1, 1, "", "CorumFuncat"], [28, 1, 1, "", "CorumGO"], [29, 1, 1, "", "Cpad"], [30, 1, 1, "", "CustomAnnotation"], [31, 1, 1, "", "Cytosig"], [32, 1, 1, "", "Dgidb"], [33, 1, 1, "", "Disgenet"], [34, 1, 1, "", "Embrace"], [35, 1, 1, "", "Exocarta"], [36, 1, 1, "", "GOCustomIntercell"], [37, 1, 1, "", "GOIntercell"], [38, 1, 1, "", "Gpcrdb"], [39, 1, 1, "", "GuideToPharmacology"], [40, 1, 1, "", "HPO"], [41, 1, 1, "", "Hgnc"], [42, 1, 1, "", "HpmrComplex"], [43, 1, 1, "", "HumanPlasmaMembraneReceptome"], [44, 1, 1, "", "HumanProteinAtlas"], [45, 1, 1, "", "HumanProteinAtlasSecretome"], [46, 1, 1, "", "HumanProteinAtlasSubcellular"], [47, 1, 1, "", "Humancellmap"], [48, 1, 1, "", "Icellnet"], [49, 1, 1, "", "IcellnetComplex"], [50, 1, 1, "", "Integrins"], [51, 1, 1, "", "InterPro"], [52, 1, 1, "", "Intogen"], [53, 1, 1, "", "Italk"], [54, 1, 1, "", "KeggPathways"], [55, 1, 1, "", "KeggPathwaysPC"], [56, 1, 1, "", "Kinasedotcom"], [57, 1, 1, "", "Kirouac2010"], [58, 1, 1, "", "Lambert2018"], [59, 1, 1, "", "LigandReceptor"], [60, 1, 1, "", "Locate"], [61, 1, 1, "", "Lrdb"], [62, 1, 1, "", "Matrisome"], [63, 1, 1, "", "Matrixdb"], [64, 1, 1, "", "Mcam"], [65, 1, 1, "", "Membranome"], [66, 1, 1, "", "Msigdb"], [67, 1, 1, "", "NetpathPathways"], [68, 1, 1, "", "Opm"], [69, 1, 1, "", "Panglaodb"], [70, 1, 1, "", "Phobius"], [71, 1, 1, "", "Phosphatome"], [72, 1, 1, "", "Progeny"], [73, 1, 1, "", "Ramilowski2015"], [74, 1, 1, "", "Ramilowski2015Location"], [75, 1, 1, "", "Scconnect"], [76, 1, 1, "", "ScconnectComplex"], [77, 1, 1, "", "SignalinkFunctions"], [78, 1, 1, "", "SignalinkPathways"], [79, 1, 1, "", "SignorPathways"], [80, 1, 1, "", "Surfaceome"], [81, 1, 1, "", "Talklr"], [82, 1, 1, "", "Tcdb"], [83, 1, 1, "", "Tfcensus"], [84, 1, 1, "", "Topdb"], [85, 1, 1, "", "UniprotFamilies"], [86, 1, 1, "", "UniprotKeywords"], [87, 1, 1, "", "UniprotLocations"], [88, 1, 1, "", "UniprotTissues"], [89, 1, 1, "", "UniprotTopologies"], [90, 1, 1, "", "Vesiclepedia"], [91, 1, 1, "", "Wang"], [92, 1, 1, "", "Zhong2015"], [93, 3, 1, "", "get_db"], [94, 3, 1, "", "init_db"]], "pypath.core.annot.Adhesome": [[3, 2, 1, "", "__init__"], [3, 2, 1, "", "add_complexes_by_inference"], [3, 2, 1, "", "all_complexes"], [3, 2, 1, "", "all_entities"], [3, 2, 1, "", "all_mirnas"], [3, 2, 1, "", "all_proteins"], [3, 2, 1, "", "all_refs"], [3, 2, 1, "", "annotate_complex"], [3, 2, 1, "", "browse"], [3, 2, 1, "", "complex_inference"], [3, 2, 1, "", "coverage"], [3, 2, 1, "", "curation_effort"], [3, 2, 1, "", "get_names"], [3, 2, 1, "", "get_reference_set"], [3, 2, 1, "", "get_subset"], [3, 2, 1, "", "get_subset_bool_array"], [3, 2, 1, "", "get_values"], [3, 2, 1, "", "labels"], [3, 2, 1, "", "load"], [3, 2, 1, "", "load_data"], [3, 2, 1, "", "load_proteins"], [3, 2, 1, "", "make_df"], [3, 2, 1, "", "numof_entities"], [3, 2, 1, "", "numof_records"], [3, 2, 1, "", "numof_references"], [3, 2, 1, "", "process"], [3, 2, 1, "", "reload"], [3, 2, 1, "", "select"], [3, 2, 1, "", "set_method"], [3, 2, 1, "", "set_reference_set"], [3, 2, 1, "", "show"], [3, 2, 1, "", "subset_intersection"], [3, 2, 1, "", "to_array"], [3, 2, 1, "", "to_bool_array"], [3, 2, 1, "", "to_set"]], "pypath.core.annot.Almen2009": [[4, 2, 1, "", "__init__"], [4, 2, 1, "", "add_complexes_by_inference"], [4, 2, 1, "", "all_complexes"], [4, 2, 1, "", "all_entities"], [4, 2, 1, "", "all_mirnas"], [4, 2, 1, "", "all_proteins"], [4, 2, 1, "", "all_refs"], [4, 2, 1, "", "annotate_complex"], [4, 2, 1, "", "browse"], [4, 2, 1, "", "complex_inference"], [4, 2, 1, "", "coverage"], [4, 2, 1, "", "curation_effort"], [4, 2, 1, "", "get_names"], [4, 2, 1, "", "get_reference_set"], [4, 2, 1, "", "get_subset"], [4, 2, 1, "", "get_subset_bool_array"], [4, 2, 1, "", "get_values"], [4, 2, 1, "", "labels"], [4, 2, 1, "", "load"], [4, 2, 1, "", "load_data"], [4, 2, 1, "", "load_proteins"], [4, 2, 1, "", "make_df"], [4, 2, 1, "", "numof_entities"], [4, 2, 1, "", "numof_records"], [4, 2, 1, "", "numof_references"], [4, 2, 1, "", "process"], [4, 2, 1, "", "reload"], [4, 2, 1, "", "select"], [4, 2, 1, "", "set_method"], [4, 2, 1, "", "set_reference_set"], [4, 2, 1, "", "show"], [4, 2, 1, "", "subset_intersection"], [4, 2, 1, "", "to_array"], [4, 2, 1, "", "to_bool_array"], [4, 2, 1, "", "to_set"]], "pypath.core.annot.AnnotationBase": [[5, 2, 1, "", "__init__"], [5, 2, 1, "", "add_complexes_by_inference"], [5, 2, 1, "", "all_complexes"], [5, 2, 1, "", "all_entities"], [5, 2, 1, "", "all_mirnas"], [5, 2, 1, "", "all_proteins"], [5, 2, 1, "", "all_refs"], [5, 2, 1, "", "annotate_complex"], [5, 2, 1, "", "browse"], [5, 2, 1, "", "complex_inference"], [5, 2, 1, "", "coverage"], [5, 2, 1, "", "curation_effort"], [5, 2, 1, "", "get_names"], [5, 2, 1, "", "get_reference_set"], [5, 2, 1, "", "get_subset"], [5, 2, 1, "", "get_subset_bool_array"], [5, 2, 1, "", "get_values"], [5, 2, 1, "", "labels"], [5, 2, 1, "", "load"], [5, 2, 1, "", "load_data"], [5, 2, 1, "", "load_proteins"], [5, 2, 1, "", "make_df"], [5, 2, 1, "", "numof_entities"], [5, 2, 1, "", "numof_records"], [5, 2, 1, "", "numof_references"], [5, 2, 1, "", "process"], [5, 2, 1, "", "reload"], [5, 2, 1, "", "select"], [5, 2, 1, "", "set_method"], [5, 2, 1, "", "set_reference_set"], [5, 2, 1, "", "show"], [5, 2, 1, "", "subset_intersection"], [5, 2, 1, "", "to_array"], [5, 2, 1, "", "to_bool_array"], [5, 2, 1, "", "to_set"]], "pypath.core.annot.AnnotationTable": [[6, 2, 1, "", "__init__"], [6, 2, 1, "", "all_annotations"], [6, 2, 1, "", "all_annotations_str"], [6, 2, 1, "", "reload"], [6, 2, 1, "", "search"]], "pypath.core.annot.Baccin2019": [[7, 2, 1, "", "__init__"], [7, 2, 1, "", "add_complexes_by_inference"], [7, 2, 1, "", "all_complexes"], [7, 2, 1, "", "all_entities"], [7, 2, 1, "", "all_mirnas"], [7, 2, 1, "", "all_proteins"], [7, 2, 1, "", "all_refs"], [7, 2, 1, "", "annotate_complex"], [7, 2, 1, "", "browse"], [7, 2, 1, "", "complex_inference"], [7, 2, 1, "", "coverage"], [7, 2, 1, "", "curation_effort"], [7, 2, 1, "", "get_names"], [7, 2, 1, "", "get_reference_set"], [7, 2, 1, "", "get_subset"], [7, 2, 1, "", "get_subset_bool_array"], [7, 2, 1, "", "get_values"], [7, 2, 1, "", "labels"], [7, 2, 1, "", "load"], [7, 2, 1, "", "load_data"], [7, 2, 1, "", "load_proteins"], [7, 2, 1, "", "make_df"], [7, 2, 1, "", "numof_entities"], [7, 2, 1, "", "numof_records"], [7, 2, 1, "", "numof_references"], [7, 2, 1, "", "process"], [7, 2, 1, "", "reload"], [7, 2, 1, "", "select"], [7, 2, 1, "", "set_method"], [7, 2, 1, "", "set_reference_set"], [7, 2, 1, "", "show"], [7, 2, 1, "", "subset_intersection"], [7, 2, 1, "", "to_array"], [7, 2, 1, "", "to_bool_array"], [7, 2, 1, "", "to_set"]], "pypath.core.annot.Biogps": [[8, 2, 1, "", "__init__"], [8, 2, 1, "", "add_complexes_by_inference"], [8, 2, 1, "", "all_complexes"], [8, 2, 1, "", "all_entities"], [8, 2, 1, "", "all_mirnas"], [8, 2, 1, "", "all_proteins"], [8, 2, 1, "", "all_refs"], [8, 2, 1, "", "annotate_complex"], [8, 2, 1, "", "browse"], [8, 2, 1, "", "complex_inference"], [8, 2, 1, "", "coverage"], [8, 2, 1, "", "curation_effort"], [8, 2, 1, "", "get_names"], [8, 2, 1, "", "get_reference_set"], [8, 2, 1, "", "get_subset"], [8, 2, 1, "", "get_subset_bool_array"], [8, 2, 1, "", "get_values"], [8, 2, 1, "", "labels"], [8, 2, 1, "", "load"], [8, 2, 1, "", "load_data"], [8, 2, 1, "", "load_proteins"], [8, 2, 1, "", "make_df"], [8, 2, 1, "", "numof_entities"], [8, 2, 1, "", "numof_records"], [8, 2, 1, "", "numof_references"], [8, 2, 1, "", "process"], [8, 2, 1, "", "reload"], [8, 2, 1, "", "select"], [8, 2, 1, "", "set_method"], [8, 2, 1, "", "set_reference_set"], [8, 2, 1, "", "show"], [8, 2, 1, "", "subset_intersection"], [8, 2, 1, "", "to_array"], [8, 2, 1, "", "to_bool_array"], [8, 2, 1, "", "to_set"]], "pypath.core.annot.CancerGeneCensus": [[9, 2, 1, "", "__init__"], [9, 2, 1, "", "add_complexes_by_inference"], [9, 2, 1, "", "all_complexes"], [9, 2, 1, "", "all_entities"], [9, 2, 1, "", "all_mirnas"], [9, 2, 1, "", "all_proteins"], [9, 2, 1, "", "all_refs"], [9, 2, 1, "", "annotate_complex"], [9, 2, 1, "", "browse"], [9, 2, 1, "", "complex_inference"], [9, 2, 1, "", "coverage"], [9, 2, 1, "", "curation_effort"], [9, 2, 1, "", "get_names"], [9, 2, 1, "", "get_reference_set"], [9, 2, 1, "", "get_subset"], [9, 2, 1, "", "get_subset_bool_array"], [9, 2, 1, "", "get_values"], [9, 2, 1, "", "labels"], [9, 2, 1, "", "load"], [9, 2, 1, "", "load_data"], [9, 2, 1, "", "load_proteins"], [9, 2, 1, "", "make_df"], [9, 2, 1, "", "numof_entities"], [9, 2, 1, "", "numof_records"], [9, 2, 1, "", "numof_references"], [9, 2, 1, "", "process"], [9, 2, 1, "", "reload"], [9, 2, 1, "", "select"], [9, 2, 1, "", "set_method"], [9, 2, 1, "", "set_reference_set"], [9, 2, 1, "", "show"], [9, 2, 1, "", "subset_intersection"], [9, 2, 1, "", "to_array"], [9, 2, 1, "", "to_bool_array"], [9, 2, 1, "", "to_set"]], "pypath.core.annot.Cancerdrugsdb": [[10, 2, 1, "", "__init__"], [10, 2, 1, "", "add_complexes_by_inference"], [10, 2, 1, "", "all_complexes"], [10, 2, 1, "", "all_entities"], [10, 2, 1, "", "all_mirnas"], [10, 2, 1, "", "all_proteins"], [10, 2, 1, "", "all_refs"], [10, 2, 1, "", "annotate_complex"], [10, 2, 1, "", "browse"], [10, 2, 1, "", "complex_inference"], [10, 2, 1, "", "coverage"], [10, 2, 1, "", "curation_effort"], [10, 2, 1, "", "get_names"], [10, 2, 1, "", "get_reference_set"], [10, 2, 1, "", "get_subset"], [10, 2, 1, "", "get_subset_bool_array"], [10, 2, 1, "", "get_values"], [10, 2, 1, "", "labels"], [10, 2, 1, "", "load"], [10, 2, 1, "", "load_data"], [10, 2, 1, "", "load_proteins"], [10, 2, 1, "", "make_df"], [10, 2, 1, "", "numof_entities"], [10, 2, 1, "", "numof_records"], [10, 2, 1, "", "numof_references"], [10, 2, 1, "", "process"], [10, 2, 1, "", "reload"], [10, 2, 1, "", "select"], [10, 2, 1, "", "set_method"], [10, 2, 1, "", "set_reference_set"], [10, 2, 1, "", "show"], [10, 2, 1, "", "subset_intersection"], [10, 2, 1, "", "to_array"], [10, 2, 1, "", "to_bool_array"], [10, 2, 1, "", "to_set"]], "pypath.core.annot.Cancersea": [[11, 2, 1, "", "__init__"], [11, 2, 1, "", "add_complexes_by_inference"], [11, 2, 1, "", "all_complexes"], [11, 2, 1, "", "all_entities"], [11, 2, 1, "", "all_mirnas"], [11, 2, 1, "", "all_proteins"], [11, 2, 1, "", "all_refs"], [11, 2, 1, "", "annotate_complex"], [11, 2, 1, "", "browse"], [11, 2, 1, "", "complex_inference"], [11, 2, 1, "", "coverage"], [11, 2, 1, "", "curation_effort"], [11, 2, 1, "", "get_names"], [11, 2, 1, "", "get_reference_set"], [11, 2, 1, "", "get_subset"], [11, 2, 1, "", "get_subset_bool_array"], [11, 2, 1, "", "get_values"], [11, 2, 1, "", "labels"], [11, 2, 1, "", "load"], [11, 2, 1, "", "load_data"], [11, 2, 1, "", "load_proteins"], [11, 2, 1, "", "make_df"], [11, 2, 1, "", "numof_entities"], [11, 2, 1, "", "numof_records"], [11, 2, 1, "", "numof_references"], [11, 2, 1, "", "process"], [11, 2, 1, "", "reload"], [11, 2, 1, "", "select"], [11, 2, 1, "", "set_method"], [11, 2, 1, "", "set_reference_set"], [11, 2, 1, "", "show"], [11, 2, 1, "", "subset_intersection"], [11, 2, 1, "", "to_array"], [11, 2, 1, "", "to_bool_array"], [11, 2, 1, "", "to_set"]], "pypath.core.annot.CellPhoneDB": [[12, 2, 1, "", "__init__"], [12, 2, 1, "", "add_complexes_by_inference"], [12, 2, 1, "", "all_complexes"], [12, 2, 1, "", "all_entities"], [12, 2, 1, "", "all_mirnas"], [12, 2, 1, "", "all_proteins"], [12, 2, 1, "", "all_refs"], [12, 2, 1, "", "annotate_complex"], [12, 2, 1, "", "browse"], [12, 2, 1, "", "complex_inference"], [12, 2, 1, "", "coverage"], [12, 2, 1, "", "curation_effort"], [12, 2, 1, "", "get_names"], [12, 2, 1, "", "get_reference_set"], [12, 2, 1, "", "get_subset"], [12, 2, 1, "", "get_subset_bool_array"], [12, 2, 1, "", "get_values"], [12, 2, 1, "", "labels"], [12, 2, 1, "", "load"], [12, 2, 1, "", "load_data"], [12, 2, 1, "", "load_proteins"], [12, 2, 1, "", "make_df"], [12, 2, 1, "", "numof_entities"], [12, 2, 1, "", "numof_records"], [12, 2, 1, "", "numof_references"], [12, 2, 1, "", "process"], [12, 2, 1, "", "reload"], [12, 2, 1, "", "select"], [12, 2, 1, "", "set_method"], [12, 2, 1, "", "set_reference_set"], [12, 2, 1, "", "show"], [12, 2, 1, "", "subset_intersection"], [12, 2, 1, "", "to_array"], [12, 2, 1, "", "to_bool_array"], [12, 2, 1, "", "to_set"]], "pypath.core.annot.CellPhoneDBComplex": [[13, 2, 1, "", "__init__"], [13, 2, 1, "", "add_complexes_by_inference"], [13, 2, 1, "", "all_complexes"], [13, 2, 1, "", "all_entities"], [13, 2, 1, "", "all_mirnas"], [13, 2, 1, "", "all_proteins"], [13, 2, 1, "", "all_refs"], [13, 2, 1, "", "annotate_complex"], [13, 2, 1, "", "browse"], [13, 2, 1, "", "complex_inference"], [13, 2, 1, "", "coverage"], [13, 2, 1, "", "curation_effort"], [13, 2, 1, "", "get_names"], [13, 2, 1, "", "get_reference_set"], [13, 2, 1, "", "get_subset"], [13, 2, 1, "", "get_subset_bool_array"], [13, 2, 1, "", "get_values"], [13, 2, 1, "", "labels"], [13, 2, 1, "", "load"], [13, 2, 1, "", "load_data"], [13, 2, 1, "", "load_proteins"], [13, 2, 1, "", "make_df"], [13, 2, 1, "", "numof_entities"], [13, 2, 1, "", "numof_records"], [13, 2, 1, "", "numof_references"], [13, 2, 1, "", "process"], [13, 2, 1, "", "reload"], [13, 2, 1, "", "select"], [13, 2, 1, "", "set_method"], [13, 2, 1, "", "set_reference_set"], [13, 2, 1, "", "show"], [13, 2, 1, "", "subset_intersection"], [13, 2, 1, "", "to_array"], [13, 2, 1, "", "to_bool_array"], [13, 2, 1, "", "to_set"]], "pypath.core.annot.CellSurfaceProteinAtlas": [[14, 2, 1, "", "__init__"], [14, 2, 1, "", "add_complexes_by_inference"], [14, 2, 1, "", "all_complexes"], [14, 2, 1, "", "all_entities"], [14, 2, 1, "", "all_mirnas"], [14, 2, 1, "", "all_proteins"], [14, 2, 1, "", "all_refs"], [14, 2, 1, "", "annotate_complex"], [14, 2, 1, "", "browse"], [14, 2, 1, "", "complex_inference"], [14, 2, 1, "", "coverage"], [14, 2, 1, "", "curation_effort"], [14, 2, 1, "", "get_names"], [14, 2, 1, "", "get_reference_set"], [14, 2, 1, "", "get_subset"], [14, 2, 1, "", "get_subset_bool_array"], [14, 2, 1, "", "get_values"], [14, 2, 1, "", "labels"], [14, 2, 1, "", "load"], [14, 2, 1, "", "load_data"], [14, 2, 1, "", "load_proteins"], [14, 2, 1, "", "make_df"], [14, 2, 1, "", "numof_entities"], [14, 2, 1, "", "numof_records"], [14, 2, 1, "", "numof_references"], [14, 2, 1, "", "process"], [14, 2, 1, "", "reload"], [14, 2, 1, "", "select"], [14, 2, 1, "", "set_method"], [14, 2, 1, "", "set_reference_set"], [14, 2, 1, "", "show"], [14, 2, 1, "", "subset_intersection"], [14, 2, 1, "", "to_array"], [14, 2, 1, "", "to_bool_array"], [14, 2, 1, "", "to_set"]], "pypath.core.annot.CellSurfaceProteinAtlasCellType": [[15, 2, 1, "", "__init__"], [15, 2, 1, "", "add_complexes_by_inference"], [15, 2, 1, "", "all_complexes"], [15, 2, 1, "", "all_entities"], [15, 2, 1, "", "all_mirnas"], [15, 2, 1, "", "all_proteins"], [15, 2, 1, "", "all_refs"], [15, 2, 1, "", "annotate_complex"], [15, 2, 1, "", "browse"], [15, 2, 1, "", "complex_inference"], [15, 2, 1, "", "coverage"], [15, 2, 1, "", "curation_effort"], [15, 2, 1, "", "get_names"], [15, 2, 1, "", "get_reference_set"], [15, 2, 1, "", "get_subset"], [15, 2, 1, "", "get_subset_bool_array"], [15, 2, 1, "", "get_values"], [15, 2, 1, "", "labels"], [15, 2, 1, "", "load"], [15, 2, 1, "", "load_data"], [15, 2, 1, "", "load_proteins"], [15, 2, 1, "", "make_df"], [15, 2, 1, "", "numof_entities"], [15, 2, 1, "", "numof_records"], [15, 2, 1, "", "numof_references"], [15, 2, 1, "", "process"], [15, 2, 1, "", "reload"], [15, 2, 1, "", "select"], [15, 2, 1, "", "set_method"], [15, 2, 1, "", "set_reference_set"], [15, 2, 1, "", "show"], [15, 2, 1, "", "subset_intersection"], [15, 2, 1, "", "to_array"], [15, 2, 1, "", "to_bool_array"], [15, 2, 1, "", "to_set"]], "pypath.core.annot.Cellcall": [[16, 2, 1, "", "__init__"], [16, 2, 1, "", "add_complexes_by_inference"], [16, 2, 1, "", "all_complexes"], [16, 2, 1, "", "all_entities"], [16, 2, 1, "", "all_mirnas"], [16, 2, 1, "", "all_proteins"], [16, 2, 1, "", "all_refs"], [16, 2, 1, "", "annotate_complex"], [16, 2, 1, "", "browse"], [16, 2, 1, "", "complex_inference"], [16, 2, 1, "", "coverage"], [16, 2, 1, "", "curation_effort"], [16, 2, 1, "", "get_names"], [16, 2, 1, "", "get_reference_set"], [16, 2, 1, "", "get_subset"], [16, 2, 1, "", "get_subset_bool_array"], [16, 2, 1, "", "get_values"], [16, 2, 1, "", "labels"], [16, 2, 1, "", "load"], [16, 2, 1, "", "load_data"], [16, 2, 1, "", "load_proteins"], [16, 2, 1, "", "make_df"], [16, 2, 1, "", "numof_entities"], [16, 2, 1, "", "numof_records"], [16, 2, 1, "", "numof_references"], [16, 2, 1, "", "process"], [16, 2, 1, "", "reload"], [16, 2, 1, "", "select"], [16, 2, 1, "", "set_method"], [16, 2, 1, "", "set_reference_set"], [16, 2, 1, "", "show"], [16, 2, 1, "", "subset_intersection"], [16, 2, 1, "", "to_array"], [16, 2, 1, "", "to_bool_array"], [16, 2, 1, "", "to_set"]], "pypath.core.annot.Cellcellinteractions": [[17, 2, 1, "", "__init__"], [17, 2, 1, "", "add_complexes_by_inference"], [17, 2, 1, "", "all_complexes"], [17, 2, 1, "", "all_entities"], [17, 2, 1, "", "all_mirnas"], [17, 2, 1, "", "all_proteins"], [17, 2, 1, "", "all_refs"], [17, 2, 1, "", "annotate_complex"], [17, 2, 1, "", "browse"], [17, 2, 1, "", "complex_inference"], [17, 2, 1, "", "coverage"], [17, 2, 1, "", "curation_effort"], [17, 2, 1, "", "get_names"], [17, 2, 1, "", "get_reference_set"], [17, 2, 1, "", "get_subset"], [17, 2, 1, "", "get_subset_bool_array"], [17, 2, 1, "", "get_values"], [17, 2, 1, "", "labels"], [17, 2, 1, "", "load"], [17, 2, 1, "", "load_data"], [17, 2, 1, "", "load_proteins"], [17, 2, 1, "", "make_df"], [17, 2, 1, "", "numof_entities"], [17, 2, 1, "", "numof_records"], [17, 2, 1, "", "numof_references"], [17, 2, 1, "", "process"], [17, 2, 1, "", "reload"], [17, 2, 1, "", "select"], [17, 2, 1, "", "set_method"], [17, 2, 1, "", "set_reference_set"], [17, 2, 1, "", "show"], [17, 2, 1, "", "subset_intersection"], [17, 2, 1, "", "to_array"], [17, 2, 1, "", "to_bool_array"], [17, 2, 1, "", "to_set"]], "pypath.core.annot.Cellchatdb": [[18, 2, 1, "", "__init__"], [18, 2, 1, "", "add_complexes_by_inference"], [18, 2, 1, "", "all_complexes"], [18, 2, 1, "", "all_entities"], [18, 2, 1, "", "all_mirnas"], [18, 2, 1, "", "all_proteins"], [18, 2, 1, "", "all_refs"], [18, 2, 1, "", "annotate_complex"], [18, 2, 1, "", "browse"], [18, 2, 1, "", "complex_inference"], [18, 2, 1, "", "coverage"], [18, 2, 1, "", "curation_effort"], [18, 2, 1, "", "get_names"], [18, 2, 1, "", "get_reference_set"], [18, 2, 1, "", "get_subset"], [18, 2, 1, "", "get_subset_bool_array"], [18, 2, 1, "", "get_values"], [18, 2, 1, "", "labels"], [18, 2, 1, "", "load"], [18, 2, 1, "", "load_data"], [18, 2, 1, "", "load_proteins"], [18, 2, 1, "", "make_df"], [18, 2, 1, "", "numof_entities"], [18, 2, 1, "", "numof_records"], [18, 2, 1, "", "numof_references"], [18, 2, 1, "", "process"], [18, 2, 1, "", "reload"], [18, 2, 1, "", "select"], [18, 2, 1, "", "set_method"], [18, 2, 1, "", "set_reference_set"], [18, 2, 1, "", "show"], [18, 2, 1, "", "subset_intersection"], [18, 2, 1, "", "to_array"], [18, 2, 1, "", "to_bool_array"], [18, 2, 1, "", "to_set"]], "pypath.core.annot.CellchatdbComplex": [[19, 2, 1, "", "__init__"], [19, 2, 1, "", "add_complexes_by_inference"], [19, 2, 1, "", "all_complexes"], [19, 2, 1, "", "all_entities"], [19, 2, 1, "", "all_mirnas"], [19, 2, 1, "", "all_proteins"], [19, 2, 1, "", "all_refs"], [19, 2, 1, "", "annotate_complex"], [19, 2, 1, "", "browse"], [19, 2, 1, "", "complex_inference"], [19, 2, 1, "", "coverage"], [19, 2, 1, "", "curation_effort"], [19, 2, 1, "", "get_names"], [19, 2, 1, "", "get_reference_set"], [19, 2, 1, "", "get_subset"], [19, 2, 1, "", "get_subset_bool_array"], [19, 2, 1, "", "get_values"], [19, 2, 1, "", "labels"], [19, 2, 1, "", "load"], [19, 2, 1, "", "load_data"], [19, 2, 1, "", "load_proteins"], [19, 2, 1, "", "make_df"], [19, 2, 1, "", "numof_entities"], [19, 2, 1, "", "numof_records"], [19, 2, 1, "", "numof_references"], [19, 2, 1, "", "process"], [19, 2, 1, "", "reload"], [19, 2, 1, "", "select"], [19, 2, 1, "", "set_method"], [19, 2, 1, "", "set_reference_set"], [19, 2, 1, "", "show"], [19, 2, 1, "", "subset_intersection"], [19, 2, 1, "", "to_array"], [19, 2, 1, "", "to_bool_array"], [19, 2, 1, "", "to_set"]], "pypath.core.annot.Cellinker": [[20, 2, 1, "", "__init__"], [20, 2, 1, "", "add_complexes_by_inference"], [20, 2, 1, "", "all_complexes"], [20, 2, 1, "", "all_entities"], [20, 2, 1, "", "all_mirnas"], [20, 2, 1, "", "all_proteins"], [20, 2, 1, "", "all_refs"], [20, 2, 1, "", "annotate_complex"], [20, 2, 1, "", "browse"], [20, 2, 1, "", "complex_inference"], [20, 2, 1, "", "coverage"], [20, 2, 1, "", "curation_effort"], [20, 2, 1, "", "get_names"], [20, 2, 1, "", "get_reference_set"], [20, 2, 1, "", "get_subset"], [20, 2, 1, "", "get_subset_bool_array"], [20, 2, 1, "", "get_values"], [20, 2, 1, "", "labels"], [20, 2, 1, "", "load"], [20, 2, 1, "", "load_data"], [20, 2, 1, "", "load_proteins"], [20, 2, 1, "", "make_df"], [20, 2, 1, "", "numof_entities"], [20, 2, 1, "", "numof_records"], [20, 2, 1, "", "numof_references"], [20, 2, 1, "", "process"], [20, 2, 1, "", "reload"], [20, 2, 1, "", "select"], [20, 2, 1, "", "set_method"], [20, 2, 1, "", "set_reference_set"], [20, 2, 1, "", "show"], [20, 2, 1, "", "subset_intersection"], [20, 2, 1, "", "to_array"], [20, 2, 1, "", "to_bool_array"], [20, 2, 1, "", "to_set"]], "pypath.core.annot.CellinkerComplex": [[21, 2, 1, "", "__init__"], [21, 2, 1, "", "add_complexes_by_inference"], [21, 2, 1, "", "all_complexes"], [21, 2, 1, "", "all_entities"], [21, 2, 1, "", "all_mirnas"], [21, 2, 1, "", "all_proteins"], [21, 2, 1, "", "all_refs"], [21, 2, 1, "", "annotate_complex"], [21, 2, 1, "", "browse"], [21, 2, 1, "", "complex_inference"], [21, 2, 1, "", "coverage"], [21, 2, 1, "", "curation_effort"], [21, 2, 1, "", "get_names"], [21, 2, 1, "", "get_reference_set"], [21, 2, 1, "", "get_subset"], [21, 2, 1, "", "get_subset_bool_array"], [21, 2, 1, "", "get_values"], [21, 2, 1, "", "labels"], [21, 2, 1, "", "load"], [21, 2, 1, "", "load_data"], [21, 2, 1, "", "load_proteins"], [21, 2, 1, "", "make_df"], [21, 2, 1, "", "numof_entities"], [21, 2, 1, "", "numof_records"], [21, 2, 1, "", "numof_references"], [21, 2, 1, "", "process"], [21, 2, 1, "", "reload"], [21, 2, 1, "", "select"], [21, 2, 1, "", "set_method"], [21, 2, 1, "", "set_reference_set"], [21, 2, 1, "", "show"], [21, 2, 1, "", "subset_intersection"], [21, 2, 1, "", "to_array"], [21, 2, 1, "", "to_bool_array"], [21, 2, 1, "", "to_set"]], "pypath.core.annot.Celltalkdb": [[22, 2, 1, "", "__init__"], [22, 2, 1, "", "add_complexes_by_inference"], [22, 2, 1, "", "all_complexes"], [22, 2, 1, "", "all_entities"], [22, 2, 1, "", "all_mirnas"], [22, 2, 1, "", "all_proteins"], [22, 2, 1, "", "all_refs"], [22, 2, 1, "", "annotate_complex"], [22, 2, 1, "", "browse"], [22, 2, 1, "", "complex_inference"], [22, 2, 1, "", "coverage"], [22, 2, 1, "", "curation_effort"], [22, 2, 1, "", "get_names"], [22, 2, 1, "", "get_reference_set"], [22, 2, 1, "", "get_subset"], [22, 2, 1, "", "get_subset_bool_array"], [22, 2, 1, "", "get_values"], [22, 2, 1, "", "labels"], [22, 2, 1, "", "load"], [22, 2, 1, "", "load_data"], [22, 2, 1, "", "load_proteins"], [22, 2, 1, "", "make_df"], [22, 2, 1, "", "numof_entities"], [22, 2, 1, "", "numof_records"], [22, 2, 1, "", "numof_references"], [22, 2, 1, "", "process"], [22, 2, 1, "", "reload"], [22, 2, 1, "", "select"], [22, 2, 1, "", "set_method"], [22, 2, 1, "", "set_reference_set"], [22, 2, 1, "", "show"], [22, 2, 1, "", "subset_intersection"], [22, 2, 1, "", "to_array"], [22, 2, 1, "", "to_bool_array"], [22, 2, 1, "", "to_set"]], "pypath.core.annot.Celltypist": [[23, 2, 1, "", "__init__"], [23, 2, 1, "", "add_complexes_by_inference"], [23, 2, 1, "", "all_complexes"], [23, 2, 1, "", "all_entities"], [23, 2, 1, "", "all_mirnas"], [23, 2, 1, "", "all_proteins"], [23, 2, 1, "", "all_refs"], [23, 2, 1, "", "annotate_complex"], [23, 2, 1, "", "browse"], [23, 2, 1, "", "complex_inference"], [23, 2, 1, "", "coverage"], [23, 2, 1, "", "curation_effort"], [23, 2, 1, "", "get_names"], [23, 2, 1, "", "get_reference_set"], [23, 2, 1, "", "get_subset"], [23, 2, 1, "", "get_subset_bool_array"], [23, 2, 1, "", "get_values"], [23, 2, 1, "", "labels"], [23, 2, 1, "", "load"], [23, 2, 1, "", "load_data"], [23, 2, 1, "", "load_proteins"], [23, 2, 1, "", "make_df"], [23, 2, 1, "", "numof_entities"], [23, 2, 1, "", "numof_records"], [23, 2, 1, "", "numof_references"], [23, 2, 1, "", "process"], [23, 2, 1, "", "reload"], [23, 2, 1, "", "select"], [23, 2, 1, "", "set_method"], [23, 2, 1, "", "set_reference_set"], [23, 2, 1, "", "show"], [23, 2, 1, "", "subset_intersection"], [23, 2, 1, "", "to_array"], [23, 2, 1, "", "to_bool_array"], [23, 2, 1, "", "to_set"]], "pypath.core.annot.Comppi": [[24, 2, 1, "", "__init__"], [24, 2, 1, "", "add_complexes_by_inference"], [24, 2, 1, "", "all_complexes"], [24, 2, 1, "", "all_entities"], [24, 2, 1, "", "all_mirnas"], [24, 2, 1, "", "all_proteins"], [24, 2, 1, "", "all_refs"], [24, 2, 1, "", "annotate_complex"], [24, 2, 1, "", "browse"], [24, 2, 1, "", "complex_inference"], [24, 2, 1, "", "coverage"], [24, 2, 1, "", "curation_effort"], [24, 2, 1, "", "get_names"], [24, 2, 1, "", "get_reference_set"], [24, 2, 1, "", "get_subset"], [24, 2, 1, "", "get_subset_bool_array"], [24, 2, 1, "", "get_values"], [24, 2, 1, "", "labels"], [24, 2, 1, "", "load"], [24, 2, 1, "", "load_data"], [24, 2, 1, "", "load_proteins"], [24, 2, 1, "", "make_df"], [24, 2, 1, "", "numof_entities"], [24, 2, 1, "", "numof_records"], [24, 2, 1, "", "numof_references"], [24, 2, 1, "", "process"], [24, 2, 1, "", "reload"], [24, 2, 1, "", "select"], [24, 2, 1, "", "set_method"], [24, 2, 1, "", "set_reference_set"], [24, 2, 1, "", "show"], [24, 2, 1, "", "subset_intersection"], [24, 2, 1, "", "to_array"], [24, 2, 1, "", "to_bool_array"], [24, 2, 1, "", "to_set"]], "pypath.core.annot.Connectomedb": [[25, 2, 1, "", "__init__"], [25, 2, 1, "", "add_complexes_by_inference"], [25, 2, 1, "", "all_complexes"], [25, 2, 1, "", "all_entities"], [25, 2, 1, "", "all_mirnas"], [25, 2, 1, "", "all_proteins"], [25, 2, 1, "", "all_refs"], [25, 2, 1, "", "annotate_complex"], [25, 2, 1, "", "browse"], [25, 2, 1, "", "complex_inference"], [25, 2, 1, "", "coverage"], [25, 2, 1, "", "curation_effort"], [25, 2, 1, "", "get_names"], [25, 2, 1, "", "get_reference_set"], [25, 2, 1, "", "get_subset"], [25, 2, 1, "", "get_subset_bool_array"], [25, 2, 1, "", "get_values"], [25, 2, 1, "", "labels"], [25, 2, 1, "", "load"], [25, 2, 1, "", "load_data"], [25, 2, 1, "", "load_proteins"], [25, 2, 1, "", "make_df"], [25, 2, 1, "", "numof_entities"], [25, 2, 1, "", "numof_records"], [25, 2, 1, "", "numof_references"], [25, 2, 1, "", "process"], [25, 2, 1, "", "reload"], [25, 2, 1, "", "select"], [25, 2, 1, "", "set_method"], [25, 2, 1, "", "set_reference_set"], [25, 2, 1, "", "show"], [25, 2, 1, "", "subset_intersection"], [25, 2, 1, "", "to_array"], [25, 2, 1, "", "to_bool_array"], [25, 2, 1, "", "to_set"]], "pypath.core.annot.Corum": [[26, 2, 1, "", "__init__"], [26, 2, 1, "", "add_complexes_by_inference"], [26, 2, 1, "", "all_complexes"], [26, 2, 1, "", "all_entities"], [26, 2, 1, "", "all_mirnas"], [26, 2, 1, "", "all_proteins"], [26, 2, 1, "", "all_refs"], [26, 2, 1, "", "annotate_complex"], [26, 2, 1, "", "browse"], [26, 2, 1, "", "complex_inference"], [26, 2, 1, "", "coverage"], [26, 2, 1, "", "curation_effort"], [26, 2, 1, "", "get_names"], [26, 2, 1, "", "get_reference_set"], [26, 2, 1, "", "get_subset"], [26, 2, 1, "", "get_subset_bool_array"], [26, 2, 1, "", "get_values"], [26, 2, 1, "", "labels"], [26, 2, 1, "", "load"], [26, 2, 1, "", "load_data"], [26, 2, 1, "", "load_proteins"], [26, 2, 1, "", "make_df"], [26, 2, 1, "", "numof_entities"], [26, 2, 1, "", "numof_records"], [26, 2, 1, "", "numof_references"], [26, 2, 1, "", "process"], [26, 2, 1, "", "reload"], [26, 2, 1, "", "select"], [26, 2, 1, "", "set_method"], [26, 2, 1, "", "set_reference_set"], [26, 2, 1, "", "show"], [26, 2, 1, "", "subset_intersection"], [26, 2, 1, "", "to_array"], [26, 2, 1, "", "to_bool_array"], [26, 2, 1, "", "to_set"]], "pypath.core.annot.CorumFuncat": [[27, 2, 1, "", "__init__"], [27, 2, 1, "", "add_complexes_by_inference"], [27, 2, 1, "", "all_complexes"], [27, 2, 1, "", "all_entities"], [27, 2, 1, "", "all_mirnas"], [27, 2, 1, "", "all_proteins"], [27, 2, 1, "", "all_refs"], [27, 2, 1, "", "annotate_complex"], [27, 2, 1, "", "browse"], [27, 2, 1, "", "complex_inference"], [27, 2, 1, "", "coverage"], [27, 2, 1, "", "curation_effort"], [27, 2, 1, "", "get_names"], [27, 2, 1, "", "get_reference_set"], [27, 2, 1, "", "get_subset"], [27, 2, 1, "", "get_subset_bool_array"], [27, 2, 1, "", "get_values"], [27, 2, 1, "", "labels"], [27, 2, 1, "", "load"], [27, 2, 1, "", "load_data"], [27, 2, 1, "", "load_proteins"], [27, 2, 1, "", "make_df"], [27, 2, 1, "", "numof_entities"], [27, 2, 1, "", "numof_records"], [27, 2, 1, "", "numof_references"], [27, 2, 1, "", "process"], [27, 2, 1, "", "reload"], [27, 2, 1, "", "select"], [27, 2, 1, "", "set_method"], [27, 2, 1, "", "set_reference_set"], [27, 2, 1, "", "show"], [27, 2, 1, "", "subset_intersection"], [27, 2, 1, "", "to_array"], [27, 2, 1, "", "to_bool_array"], [27, 2, 1, "", "to_set"]], "pypath.core.annot.CorumGO": [[28, 2, 1, "", "__init__"], [28, 2, 1, "", "add_complexes_by_inference"], [28, 2, 1, "", "all_complexes"], [28, 2, 1, "", "all_entities"], [28, 2, 1, "", "all_mirnas"], [28, 2, 1, "", "all_proteins"], [28, 2, 1, "", "all_refs"], [28, 2, 1, "", "annotate_complex"], [28, 2, 1, "", "browse"], [28, 2, 1, "", "complex_inference"], [28, 2, 1, "", "coverage"], [28, 2, 1, "", "curation_effort"], [28, 2, 1, "", "get_names"], [28, 2, 1, "", "get_reference_set"], [28, 2, 1, "", "get_subset"], [28, 2, 1, "", "get_subset_bool_array"], [28, 2, 1, "", "get_values"], [28, 2, 1, "", "labels"], [28, 2, 1, "", "load"], [28, 2, 1, "", "load_data"], [28, 2, 1, "", "load_proteins"], [28, 2, 1, "", "make_df"], [28, 2, 1, "", "numof_entities"], [28, 2, 1, "", "numof_records"], [28, 2, 1, "", "numof_references"], [28, 2, 1, "", "process"], [28, 2, 1, "", "reload"], [28, 2, 1, "", "select"], [28, 2, 1, "", "set_method"], [28, 2, 1, "", "set_reference_set"], [28, 2, 1, "", "show"], [28, 2, 1, "", "subset_intersection"], [28, 2, 1, "", "to_array"], [28, 2, 1, "", "to_bool_array"], [28, 2, 1, "", "to_set"]], "pypath.core.annot.Cpad": [[29, 2, 1, "", "__init__"], [29, 2, 1, "", "add_complexes_by_inference"], [29, 2, 1, "", "all_complexes"], [29, 2, 1, "", "all_entities"], [29, 2, 1, "", "all_mirnas"], [29, 2, 1, "", "all_proteins"], [29, 2, 1, "", "all_refs"], [29, 2, 1, "", "annotate_complex"], [29, 2, 1, "", "browse"], [29, 2, 1, "", "complex_inference"], [29, 2, 1, "", "coverage"], [29, 2, 1, "", "curation_effort"], [29, 2, 1, "", "get_names"], [29, 2, 1, "", "get_reference_set"], [29, 2, 1, "", "get_subset"], [29, 2, 1, "", "get_subset_bool_array"], [29, 2, 1, "", "get_values"], [29, 2, 1, "", "labels"], [29, 2, 1, "", "load"], [29, 2, 1, "", "load_data"], [29, 2, 1, "", "load_proteins"], [29, 2, 1, "", "make_df"], [29, 2, 1, "", "numof_entities"], [29, 2, 1, "", "numof_records"], [29, 2, 1, "", "numof_references"], [29, 2, 1, "", "process"], [29, 2, 1, "", "reload"], [29, 2, 1, "", "select"], [29, 2, 1, "", "set_method"], [29, 2, 1, "", "set_reference_set"], [29, 2, 1, "", "show"], [29, 2, 1, "", "subset_intersection"], [29, 2, 1, "", "to_array"], [29, 2, 1, "", "to_bool_array"], [29, 2, 1, "", "to_set"]], "pypath.core.annot.CustomAnnotation": [[30, 2, 1, "", "__init__"], [30, 2, 1, "", "browse"], [30, 2, 1, "", "class_to_class_connections"], [30, 2, 1, "", "classes_by_entity"], [30, 2, 1, "", "counts"], [30, 2, 1, "", "counts_by_class"], [30, 2, 1, "", "create_class"], [30, 2, 1, "", "degree_inter_class_network"], [30, 2, 1, "", "filter"], [30, 2, 1, "", "filter_classes"], [30, 2, 1, "", "filter_interclass_network"], [30, 2, 1, "", "get_class"], [30, 2, 1, "", "get_df"], [30, 2, 1, "", "get_interclass_network_df"], [30, 2, 1, "", "get_parents"], [30, 2, 1, "", "get_resource"], [30, 2, 1, "", "get_resources"], [30, 2, 1, "", "labels"], [30, 2, 1, "", "make_df"], [30, 2, 1, "", "network_df"], [30, 2, 1, "", "populate_classes"], [30, 2, 1, "", "populate_scores"], [30, 2, 1, "", "process_annot"], [30, 2, 1, "", "quality_check_table"], [30, 2, 1, "", "register_network"], [30, 2, 1, "", "reload"], [30, 2, 1, "", "resources_in_category"], [30, 2, 1, "", "select"], [30, 2, 1, "", "set_interclass_network_df"], [30, 2, 1, "", "show"], [30, 2, 1, "", "update_parents"]], "pypath.core.annot.Cytosig": [[31, 2, 1, "", "__init__"], [31, 2, 1, "", "add_complexes_by_inference"], [31, 2, 1, "", "all_complexes"], [31, 2, 1, "", "all_entities"], [31, 2, 1, "", "all_mirnas"], [31, 2, 1, "", "all_proteins"], [31, 2, 1, "", "all_refs"], [31, 2, 1, "", "annotate_complex"], [31, 2, 1, "", "browse"], [31, 2, 1, "", "complex_inference"], [31, 2, 1, "", "coverage"], [31, 2, 1, "", "curation_effort"], [31, 2, 1, "", "get_names"], [31, 2, 1, "", "get_reference_set"], [31, 2, 1, "", "get_subset"], [31, 2, 1, "", "get_subset_bool_array"], [31, 2, 1, "", "get_values"], [31, 2, 1, "", "labels"], [31, 2, 1, "", "load"], [31, 2, 1, "", "load_data"], [31, 2, 1, "", "load_proteins"], [31, 2, 1, "", "make_df"], [31, 2, 1, "", "numof_entities"], [31, 2, 1, "", "numof_records"], [31, 2, 1, "", "numof_references"], [31, 2, 1, "", "process"], [31, 2, 1, "", "reload"], [31, 2, 1, "", "select"], [31, 2, 1, "", "set_method"], [31, 2, 1, "", "set_reference_set"], [31, 2, 1, "", "show"], [31, 2, 1, "", "subset_intersection"], [31, 2, 1, "", "to_array"], [31, 2, 1, "", "to_bool_array"], [31, 2, 1, "", "to_set"]], "pypath.core.annot.Dgidb": [[32, 2, 1, "", "__init__"], [32, 2, 1, "", "add_complexes_by_inference"], [32, 2, 1, "", "all_complexes"], [32, 2, 1, "", "all_entities"], [32, 2, 1, "", "all_mirnas"], [32, 2, 1, "", "all_proteins"], [32, 2, 1, "", "all_refs"], [32, 2, 1, "", "annotate_complex"], [32, 2, 1, "", "browse"], [32, 2, 1, "", "complex_inference"], [32, 2, 1, "", "coverage"], [32, 2, 1, "", "curation_effort"], [32, 2, 1, "", "get_names"], [32, 2, 1, "", "get_reference_set"], [32, 2, 1, "", "get_subset"], [32, 2, 1, "", "get_subset_bool_array"], [32, 2, 1, "", "get_values"], [32, 2, 1, "", "labels"], [32, 2, 1, "", "load"], [32, 2, 1, "", "load_data"], [32, 2, 1, "", "load_proteins"], [32, 2, 1, "", "make_df"], [32, 2, 1, "", "numof_entities"], [32, 2, 1, "", "numof_records"], [32, 2, 1, "", "numof_references"], [32, 2, 1, "", "process"], [32, 2, 1, "", "reload"], [32, 2, 1, "", "select"], [32, 2, 1, "", "set_method"], [32, 2, 1, "", "set_reference_set"], [32, 2, 1, "", "show"], [32, 2, 1, "", "subset_intersection"], [32, 2, 1, "", "to_array"], [32, 2, 1, "", "to_bool_array"], [32, 2, 1, "", "to_set"]], "pypath.core.annot.Disgenet": [[33, 2, 1, "", "__init__"], [33, 2, 1, "", "add_complexes_by_inference"], [33, 2, 1, "", "all_complexes"], [33, 2, 1, "", "all_entities"], [33, 2, 1, "", "all_mirnas"], [33, 2, 1, "", "all_proteins"], [33, 2, 1, "", "all_refs"], [33, 2, 1, "", "annotate_complex"], [33, 2, 1, "", "browse"], [33, 2, 1, "", "complex_inference"], [33, 2, 1, "", "coverage"], [33, 2, 1, "", "curation_effort"], [33, 2, 1, "", "get_names"], [33, 2, 1, "", "get_reference_set"], [33, 2, 1, "", "get_subset"], [33, 2, 1, "", "get_subset_bool_array"], [33, 2, 1, "", "get_values"], [33, 2, 1, "", "labels"], [33, 2, 1, "", "load"], [33, 2, 1, "", "load_data"], [33, 2, 1, "", "load_proteins"], [33, 2, 1, "", "make_df"], [33, 2, 1, "", "numof_entities"], [33, 2, 1, "", "numof_records"], [33, 2, 1, "", "numof_references"], [33, 2, 1, "", "process"], [33, 2, 1, "", "reload"], [33, 2, 1, "", "select"], [33, 2, 1, "", "set_method"], [33, 2, 1, "", "set_reference_set"], [33, 2, 1, "", "show"], [33, 2, 1, "", "subset_intersection"], [33, 2, 1, "", "to_array"], [33, 2, 1, "", "to_bool_array"], [33, 2, 1, "", "to_set"]], "pypath.core.annot.Embrace": [[34, 2, 1, "", "__init__"], [34, 2, 1, "", "add_complexes_by_inference"], [34, 2, 1, "", "all_complexes"], [34, 2, 1, "", "all_entities"], [34, 2, 1, "", "all_mirnas"], [34, 2, 1, "", "all_proteins"], [34, 2, 1, "", "all_refs"], [34, 2, 1, "", "annotate_complex"], [34, 2, 1, "", "browse"], [34, 2, 1, "", "complex_inference"], [34, 2, 1, "", "coverage"], [34, 2, 1, "", "curation_effort"], [34, 2, 1, "", "get_names"], [34, 2, 1, "", "get_reference_set"], [34, 2, 1, "", "get_subset"], [34, 2, 1, "", "get_subset_bool_array"], [34, 2, 1, "", "get_values"], [34, 2, 1, "", "labels"], [34, 2, 1, "", "load"], [34, 2, 1, "", "load_data"], [34, 2, 1, "", "load_proteins"], [34, 2, 1, "", "make_df"], [34, 2, 1, "", "numof_entities"], [34, 2, 1, "", "numof_records"], [34, 2, 1, "", "numof_references"], [34, 2, 1, "", "process"], [34, 2, 1, "", "reload"], [34, 2, 1, "", "select"], [34, 2, 1, "", "set_method"], [34, 2, 1, "", "set_reference_set"], [34, 2, 1, "", "show"], [34, 2, 1, "", "subset_intersection"], [34, 2, 1, "", "to_array"], [34, 2, 1, "", "to_bool_array"], [34, 2, 1, "", "to_set"]], "pypath.core.annot.Exocarta": [[35, 2, 1, "", "__init__"], [35, 2, 1, "", "add_complexes_by_inference"], [35, 2, 1, "", "all_complexes"], [35, 2, 1, "", "all_entities"], [35, 2, 1, "", "all_mirnas"], [35, 2, 1, "", "all_proteins"], [35, 2, 1, "", "all_refs"], [35, 2, 1, "", "annotate_complex"], [35, 2, 1, "", "browse"], [35, 2, 1, "", "complex_inference"], [35, 2, 1, "", "coverage"], [35, 2, 1, "", "curation_effort"], [35, 2, 1, "", "get_names"], [35, 2, 1, "", "get_reference_set"], [35, 2, 1, "", "get_subset"], [35, 2, 1, "", "get_subset_bool_array"], [35, 2, 1, "", "get_values"], [35, 2, 1, "", "labels"], [35, 2, 1, "", "load"], [35, 2, 1, "", "load_data"], [35, 2, 1, "", "load_proteins"], [35, 2, 1, "", "make_df"], [35, 2, 1, "", "numof_entities"], [35, 2, 1, "", "numof_records"], [35, 2, 1, "", "numof_references"], [35, 2, 1, "", "process"], [35, 2, 1, "", "reload"], [35, 2, 1, "", "select"], [35, 2, 1, "", "set_method"], [35, 2, 1, "", "set_reference_set"], [35, 2, 1, "", "show"], [35, 2, 1, "", "subset_intersection"], [35, 2, 1, "", "to_array"], [35, 2, 1, "", "to_bool_array"], [35, 2, 1, "", "to_set"]], "pypath.core.annot.GOCustomIntercell": [[36, 2, 1, "", "__init__"], [36, 2, 1, "", "get_annotation"], [36, 2, 1, "", "get_annotations"], [36, 2, 1, "", "process_categories"], [36, 2, 1, "", "reload"]], "pypath.core.annot.GOIntercell": [[37, 2, 1, "", "__init__"], [37, 2, 1, "", "add_complexes_by_inference"], [37, 2, 1, "", "all_complexes"], [37, 2, 1, "", "all_entities"], [37, 2, 1, "", "all_mirnas"], [37, 2, 1, "", "all_proteins"], [37, 2, 1, "", "all_refs"], [37, 2, 1, "", "annotate_complex"], [37, 2, 1, "", "browse"], [37, 2, 1, "", "complex_inference"], [37, 2, 1, "", "coverage"], [37, 2, 1, "", "curation_effort"], [37, 2, 1, "", "get_names"], [37, 2, 1, "", "get_reference_set"], [37, 2, 1, "", "get_subset"], [37, 2, 1, "", "get_subset_bool_array"], [37, 2, 1, "", "get_values"], [37, 2, 1, "", "labels"], [37, 2, 1, "", "load"], [37, 2, 1, "", "load_data"], [37, 2, 1, "", "load_proteins"], [37, 2, 1, "", "make_df"], [37, 2, 1, "", "numof_entities"], [37, 2, 1, "", "numof_records"], [37, 2, 1, "", "numof_references"], [37, 2, 1, "", "process"], [37, 2, 1, "", "reload"], [37, 2, 1, "", "select"], [37, 2, 1, "", "set_method"], [37, 2, 1, "", "set_reference_set"], [37, 2, 1, "", "show"], [37, 2, 1, "", "subset_intersection"], [37, 2, 1, "", "to_array"], [37, 2, 1, "", "to_bool_array"], [37, 2, 1, "", "to_set"]], "pypath.core.annot.Gpcrdb": [[38, 2, 1, "", "__init__"], [38, 2, 1, "", "add_complexes_by_inference"], [38, 2, 1, "", "all_complexes"], [38, 2, 1, "", "all_entities"], [38, 2, 1, "", "all_mirnas"], [38, 2, 1, "", "all_proteins"], [38, 2, 1, "", "all_refs"], [38, 2, 1, "", "annotate_complex"], [38, 2, 1, "", "browse"], [38, 2, 1, "", "complex_inference"], [38, 2, 1, "", "coverage"], [38, 2, 1, "", "curation_effort"], [38, 2, 1, "", "get_names"], [38, 2, 1, "", "get_reference_set"], [38, 2, 1, "", "get_subset"], [38, 2, 1, "", "get_subset_bool_array"], [38, 2, 1, "", "get_values"], [38, 2, 1, "", "labels"], [38, 2, 1, "", "load"], [38, 2, 1, "", "load_data"], [38, 2, 1, "", "load_proteins"], [38, 2, 1, "", "make_df"], [38, 2, 1, "", "numof_entities"], [38, 2, 1, "", "numof_records"], [38, 2, 1, "", "numof_references"], [38, 2, 1, "", "process"], [38, 2, 1, "", "reload"], [38, 2, 1, "", "select"], [38, 2, 1, "", "set_method"], [38, 2, 1, "", "set_reference_set"], [38, 2, 1, "", "show"], [38, 2, 1, "", "subset_intersection"], [38, 2, 1, "", "to_array"], [38, 2, 1, "", "to_bool_array"], [38, 2, 1, "", "to_set"]], "pypath.core.annot.GuideToPharmacology": [[39, 2, 1, "", "__init__"], [39, 2, 1, "", "add_complexes_by_inference"], [39, 2, 1, "", "all_complexes"], [39, 2, 1, "", "all_entities"], [39, 2, 1, "", "all_mirnas"], [39, 2, 1, "", "all_proteins"], [39, 2, 1, "", "all_refs"], [39, 2, 1, "", "annotate_complex"], [39, 2, 1, "", "browse"], [39, 2, 1, "", "complex_inference"], [39, 2, 1, "", "coverage"], [39, 2, 1, "", "curation_effort"], [39, 2, 1, "", "get_names"], [39, 2, 1, "", "get_reference_set"], [39, 2, 1, "", "get_subset"], [39, 2, 1, "", "get_subset_bool_array"], [39, 2, 1, "", "get_values"], [39, 2, 1, "", "labels"], [39, 2, 1, "", "load"], [39, 2, 1, "", "load_data"], [39, 2, 1, "", "load_proteins"], [39, 2, 1, "", "make_df"], [39, 2, 1, "", "numof_entities"], [39, 2, 1, "", "numof_records"], [39, 2, 1, "", "numof_references"], [39, 2, 1, "", "process"], [39, 2, 1, "", "reload"], [39, 2, 1, "", "select"], [39, 2, 1, "", "set_method"], [39, 2, 1, "", "set_reference_set"], [39, 2, 1, "", "show"], [39, 2, 1, "", "subset_intersection"], [39, 2, 1, "", "to_array"], [39, 2, 1, "", "to_bool_array"], [39, 2, 1, "", "to_set"]], "pypath.core.annot.HPO": [[40, 2, 1, "", "__init__"], [40, 2, 1, "", "add_complexes_by_inference"], [40, 2, 1, "", "all_complexes"], [40, 2, 1, "", "all_entities"], [40, 2, 1, "", "all_mirnas"], [40, 2, 1, "", "all_proteins"], [40, 2, 1, "", "all_refs"], [40, 2, 1, "", "annotate_complex"], [40, 2, 1, "", "browse"], [40, 2, 1, "", "complex_inference"], [40, 2, 1, "", "coverage"], [40, 2, 1, "", "curation_effort"], [40, 2, 1, "", "get_names"], [40, 2, 1, "", "get_reference_set"], [40, 2, 1, "", "get_subset"], [40, 2, 1, "", "get_subset_bool_array"], [40, 2, 1, "", "get_values"], [40, 2, 1, "", "labels"], [40, 2, 1, "", "load"], [40, 2, 1, "", "load_data"], [40, 2, 1, "", "load_proteins"], [40, 2, 1, "", "make_df"], [40, 2, 1, "", "numof_entities"], [40, 2, 1, "", "numof_records"], [40, 2, 1, "", "numof_references"], [40, 2, 1, "", "process"], [40, 2, 1, "", "reload"], [40, 2, 1, "", "select"], [40, 2, 1, "", "set_method"], [40, 2, 1, "", "set_reference_set"], [40, 2, 1, "", "show"], [40, 2, 1, "", "subset_intersection"], [40, 2, 1, "", "to_array"], [40, 2, 1, "", "to_bool_array"], [40, 2, 1, "", "to_set"]], "pypath.core.annot.Hgnc": [[41, 2, 1, "", "__init__"], [41, 2, 1, "", "add_complexes_by_inference"], [41, 2, 1, "", "all_complexes"], [41, 2, 1, "", "all_entities"], [41, 2, 1, "", "all_mirnas"], [41, 2, 1, "", "all_proteins"], [41, 2, 1, "", "all_refs"], [41, 2, 1, "", "annotate_complex"], [41, 2, 1, "", "browse"], [41, 2, 1, "", "complex_inference"], [41, 2, 1, "", "coverage"], [41, 2, 1, "", "curation_effort"], [41, 2, 1, "", "get_names"], [41, 2, 1, "", "get_reference_set"], [41, 2, 1, "", "get_subset"], [41, 2, 1, "", "get_subset_bool_array"], [41, 2, 1, "", "get_values"], [41, 2, 1, "", "labels"], [41, 2, 1, "", "load"], [41, 2, 1, "", "load_data"], [41, 2, 1, "", "load_proteins"], [41, 2, 1, "", "make_df"], [41, 2, 1, "", "numof_entities"], [41, 2, 1, "", "numof_records"], [41, 2, 1, "", "numof_references"], [41, 2, 1, "", "process"], [41, 2, 1, "", "reload"], [41, 2, 1, "", "select"], [41, 2, 1, "", "set_method"], [41, 2, 1, "", "set_reference_set"], [41, 2, 1, "", "show"], [41, 2, 1, "", "subset_intersection"], [41, 2, 1, "", "to_array"], [41, 2, 1, "", "to_bool_array"], [41, 2, 1, "", "to_set"]], "pypath.core.annot.HpmrComplex": [[42, 2, 1, "", "__init__"], [42, 2, 1, "", "add_complexes_by_inference"], [42, 2, 1, "", "all_complexes"], [42, 2, 1, "", "all_entities"], [42, 2, 1, "", "all_mirnas"], [42, 2, 1, "", "all_proteins"], [42, 2, 1, "", "all_refs"], [42, 2, 1, "", "annotate_complex"], [42, 2, 1, "", "browse"], [42, 2, 1, "", "complex_inference"], [42, 2, 1, "", "coverage"], [42, 2, 1, "", "curation_effort"], [42, 2, 1, "", "get_names"], [42, 2, 1, "", "get_reference_set"], [42, 2, 1, "", "get_subset"], [42, 2, 1, "", "get_subset_bool_array"], [42, 2, 1, "", "get_values"], [42, 2, 1, "", "labels"], [42, 2, 1, "", "load"], [42, 2, 1, "", "load_data"], [42, 2, 1, "", "load_proteins"], [42, 2, 1, "", "make_df"], [42, 2, 1, "", "numof_entities"], [42, 2, 1, "", "numof_records"], [42, 2, 1, "", "numof_references"], [42, 2, 1, "", "process"], [42, 2, 1, "", "reload"], [42, 2, 1, "", "select"], [42, 2, 1, "", "set_method"], [42, 2, 1, "", "set_reference_set"], [42, 2, 1, "", "show"], [42, 2, 1, "", "subset_intersection"], [42, 2, 1, "", "to_array"], [42, 2, 1, "", "to_bool_array"], [42, 2, 1, "", "to_set"]], "pypath.core.annot.HumanPlasmaMembraneReceptome": [[43, 2, 1, "", "__init__"], [43, 2, 1, "", "add_complexes_by_inference"], [43, 2, 1, "", "all_complexes"], [43, 2, 1, "", "all_entities"], [43, 2, 1, "", "all_mirnas"], [43, 2, 1, "", "all_proteins"], [43, 2, 1, "", "all_refs"], [43, 2, 1, "", "annotate_complex"], [43, 2, 1, "", "browse"], [43, 2, 1, "", "complex_inference"], [43, 2, 1, "", "coverage"], [43, 2, 1, "", "curation_effort"], [43, 2, 1, "", "get_names"], [43, 2, 1, "", "get_reference_set"], [43, 2, 1, "", "get_subset"], [43, 2, 1, "", "get_subset_bool_array"], [43, 2, 1, "", "get_values"], [43, 2, 1, "", "labels"], [43, 2, 1, "", "load"], [43, 2, 1, "", "load_data"], [43, 2, 1, "", "load_proteins"], [43, 2, 1, "", "make_df"], [43, 2, 1, "", "numof_entities"], [43, 2, 1, "", "numof_records"], [43, 2, 1, "", "numof_references"], [43, 2, 1, "", "process"], [43, 2, 1, "", "reload"], [43, 2, 1, "", "select"], [43, 2, 1, "", "set_method"], [43, 2, 1, "", "set_reference_set"], [43, 2, 1, "", "show"], [43, 2, 1, "", "subset_intersection"], [43, 2, 1, "", "to_array"], [43, 2, 1, "", "to_bool_array"], [43, 2, 1, "", "to_set"]], "pypath.core.annot.HumanProteinAtlas": [[44, 2, 1, "", "__init__"], [44, 2, 1, "", "add_complexes_by_inference"], [44, 2, 1, "", "all_complexes"], [44, 2, 1, "", "all_entities"], [44, 2, 1, "", "all_mirnas"], [44, 2, 1, "", "all_proteins"], [44, 2, 1, "", "all_refs"], [44, 2, 1, "", "annotate_complex"], [44, 2, 1, "", "browse"], [44, 2, 1, "", "complex_inference"], [44, 2, 1, "", "coverage"], [44, 2, 1, "", "curation_effort"], [44, 2, 1, "", "get_names"], [44, 2, 1, "", "get_reference_set"], [44, 2, 1, "", "get_subset"], [44, 2, 1, "", "get_subset_bool_array"], [44, 2, 1, "", "get_values"], [44, 2, 1, "", "labels"], [44, 2, 1, "", "load"], [44, 2, 1, "", "load_data"], [44, 2, 1, "", "load_proteins"], [44, 2, 1, "", "make_df"], [44, 2, 1, "", "numof_entities"], [44, 2, 1, "", "numof_records"], [44, 2, 1, "", "numof_references"], [44, 2, 1, "", "process"], [44, 2, 1, "", "reload"], [44, 2, 1, "", "select"], [44, 2, 1, "", "set_method"], [44, 2, 1, "", "set_reference_set"], [44, 2, 1, "", "show"], [44, 2, 1, "", "subset_intersection"], [44, 2, 1, "", "to_array"], [44, 2, 1, "", "to_bool_array"], [44, 2, 1, "", "to_set"]], "pypath.core.annot.HumanProteinAtlasSecretome": [[45, 2, 1, "", "__init__"], [45, 2, 1, "", "add_complexes_by_inference"], [45, 2, 1, "", "all_complexes"], [45, 2, 1, "", "all_entities"], [45, 2, 1, "", "all_mirnas"], [45, 2, 1, "", "all_proteins"], [45, 2, 1, "", "all_refs"], [45, 2, 1, "", "annotate_complex"], [45, 2, 1, "", "browse"], [45, 2, 1, "", "complex_inference"], [45, 2, 1, "", "coverage"], [45, 2, 1, "", "curation_effort"], [45, 2, 1, "", "get_names"], [45, 2, 1, "", "get_reference_set"], [45, 2, 1, "", "get_subset"], [45, 2, 1, "", "get_subset_bool_array"], [45, 2, 1, "", "get_values"], [45, 2, 1, "", "labels"], [45, 2, 1, "", "load"], [45, 2, 1, "", "load_data"], [45, 2, 1, "", "load_proteins"], [45, 2, 1, "", "make_df"], [45, 2, 1, "", "numof_entities"], [45, 2, 1, "", "numof_records"], [45, 2, 1, "", "numof_references"], [45, 2, 1, "", "process"], [45, 2, 1, "", "reload"], [45, 2, 1, "", "select"], [45, 2, 1, "", "set_method"], [45, 2, 1, "", "set_reference_set"], [45, 2, 1, "", "show"], [45, 2, 1, "", "subset_intersection"], [45, 2, 1, "", "to_array"], [45, 2, 1, "", "to_bool_array"], [45, 2, 1, "", "to_set"]], "pypath.core.annot.HumanProteinAtlasSubcellular": [[46, 2, 1, "", "__init__"], [46, 2, 1, "", "add_complexes_by_inference"], [46, 2, 1, "", "all_complexes"], [46, 2, 1, "", "all_entities"], [46, 2, 1, "", "all_mirnas"], [46, 2, 1, "", "all_proteins"], [46, 2, 1, "", "all_refs"], [46, 2, 1, "", "annotate_complex"], [46, 2, 1, "", "browse"], [46, 2, 1, "", "complex_inference"], [46, 2, 1, "", "coverage"], [46, 2, 1, "", "curation_effort"], [46, 2, 1, "", "get_names"], [46, 2, 1, "", "get_reference_set"], [46, 2, 1, "", "get_subset"], [46, 2, 1, "", "get_subset_bool_array"], [46, 2, 1, "", "get_values"], [46, 2, 1, "", "labels"], [46, 2, 1, "", "load"], [46, 2, 1, "", "load_data"], [46, 2, 1, "", "load_proteins"], [46, 2, 1, "", "make_df"], [46, 2, 1, "", "numof_entities"], [46, 2, 1, "", "numof_records"], [46, 2, 1, "", "numof_references"], [46, 2, 1, "", "process"], [46, 2, 1, "", "reload"], [46, 2, 1, "", "select"], [46, 2, 1, "", "set_method"], [46, 2, 1, "", "set_reference_set"], [46, 2, 1, "", "show"], [46, 2, 1, "", "subset_intersection"], [46, 2, 1, "", "to_array"], [46, 2, 1, "", "to_bool_array"], [46, 2, 1, "", "to_set"]], "pypath.core.annot.Humancellmap": [[47, 2, 1, "", "__init__"], [47, 2, 1, "", "add_complexes_by_inference"], [47, 2, 1, "", "all_complexes"], [47, 2, 1, "", "all_entities"], [47, 2, 1, "", "all_mirnas"], [47, 2, 1, "", "all_proteins"], [47, 2, 1, "", "all_refs"], [47, 2, 1, "", "annotate_complex"], [47, 2, 1, "", "browse"], [47, 2, 1, "", "complex_inference"], [47, 2, 1, "", "coverage"], [47, 2, 1, "", "curation_effort"], [47, 2, 1, "", "get_names"], [47, 2, 1, "", "get_reference_set"], [47, 2, 1, "", "get_subset"], [47, 2, 1, "", "get_subset_bool_array"], [47, 2, 1, "", "get_values"], [47, 2, 1, "", "labels"], [47, 2, 1, "", "load"], [47, 2, 1, "", "load_data"], [47, 2, 1, "", "load_proteins"], [47, 2, 1, "", "make_df"], [47, 2, 1, "", "numof_entities"], [47, 2, 1, "", "numof_records"], [47, 2, 1, "", "numof_references"], [47, 2, 1, "", "process"], [47, 2, 1, "", "reload"], [47, 2, 1, "", "select"], [47, 2, 1, "", "set_method"], [47, 2, 1, "", "set_reference_set"], [47, 2, 1, "", "show"], [47, 2, 1, "", "subset_intersection"], [47, 2, 1, "", "to_array"], [47, 2, 1, "", "to_bool_array"], [47, 2, 1, "", "to_set"]], "pypath.core.annot.Icellnet": [[48, 2, 1, "", "__init__"], [48, 2, 1, "", "add_complexes_by_inference"], [48, 2, 1, "", "all_complexes"], [48, 2, 1, "", "all_entities"], [48, 2, 1, "", "all_mirnas"], [48, 2, 1, "", "all_proteins"], [48, 2, 1, "", "all_refs"], [48, 2, 1, "", "annotate_complex"], [48, 2, 1, "", "browse"], [48, 2, 1, "", "complex_inference"], [48, 2, 1, "", "coverage"], [48, 2, 1, "", "curation_effort"], [48, 2, 1, "", "get_names"], [48, 2, 1, "", "get_reference_set"], [48, 2, 1, "", "get_subset"], [48, 2, 1, "", "get_subset_bool_array"], [48, 2, 1, "", "get_values"], [48, 2, 1, "", "labels"], [48, 2, 1, "", "load"], [48, 2, 1, "", "load_data"], [48, 2, 1, "", "load_proteins"], [48, 2, 1, "", "make_df"], [48, 2, 1, "", "numof_entities"], [48, 2, 1, "", "numof_records"], [48, 2, 1, "", "numof_references"], [48, 2, 1, "", "process"], [48, 2, 1, "", "reload"], [48, 2, 1, "", "select"], [48, 2, 1, "", "set_method"], [48, 2, 1, "", "set_reference_set"], [48, 2, 1, "", "show"], [48, 2, 1, "", "subset_intersection"], [48, 2, 1, "", "to_array"], [48, 2, 1, "", "to_bool_array"], [48, 2, 1, "", "to_set"]], "pypath.core.annot.IcellnetComplex": [[49, 2, 1, "", "__init__"], [49, 2, 1, "", "add_complexes_by_inference"], [49, 2, 1, "", "all_complexes"], [49, 2, 1, "", "all_entities"], [49, 2, 1, "", "all_mirnas"], [49, 2, 1, "", "all_proteins"], [49, 2, 1, "", "all_refs"], [49, 2, 1, "", "annotate_complex"], [49, 2, 1, "", "browse"], [49, 2, 1, "", "complex_inference"], [49, 2, 1, "", "coverage"], [49, 2, 1, "", "curation_effort"], [49, 2, 1, "", "get_names"], [49, 2, 1, "", "get_reference_set"], [49, 2, 1, "", "get_subset"], [49, 2, 1, "", "get_subset_bool_array"], [49, 2, 1, "", "get_values"], [49, 2, 1, "", "labels"], [49, 2, 1, "", "load"], [49, 2, 1, "", "load_data"], [49, 2, 1, "", "load_proteins"], [49, 2, 1, "", "make_df"], [49, 2, 1, "", "numof_entities"], [49, 2, 1, "", "numof_records"], [49, 2, 1, "", "numof_references"], [49, 2, 1, "", "process"], [49, 2, 1, "", "reload"], [49, 2, 1, "", "select"], [49, 2, 1, "", "set_method"], [49, 2, 1, "", "set_reference_set"], [49, 2, 1, "", "show"], [49, 2, 1, "", "subset_intersection"], [49, 2, 1, "", "to_array"], [49, 2, 1, "", "to_bool_array"], [49, 2, 1, "", "to_set"]], "pypath.core.annot.Integrins": [[50, 2, 1, "", "__init__"], [50, 2, 1, "", "add_complexes_by_inference"], [50, 2, 1, "", "all_complexes"], [50, 2, 1, "", "all_entities"], [50, 2, 1, "", "all_mirnas"], [50, 2, 1, "", "all_proteins"], [50, 2, 1, "", "all_refs"], [50, 2, 1, "", "annotate_complex"], [50, 2, 1, "", "browse"], [50, 2, 1, "", "complex_inference"], [50, 2, 1, "", "coverage"], [50, 2, 1, "", "curation_effort"], [50, 2, 1, "", "get_names"], [50, 2, 1, "", "get_reference_set"], [50, 2, 1, "", "get_subset"], [50, 2, 1, "", "get_subset_bool_array"], [50, 2, 1, "", "get_values"], [50, 2, 1, "", "labels"], [50, 2, 1, "", "load"], [50, 2, 1, "", "load_data"], [50, 2, 1, "", "load_proteins"], [50, 2, 1, "", "make_df"], [50, 2, 1, "", "numof_entities"], [50, 2, 1, "", "numof_records"], [50, 2, 1, "", "numof_references"], [50, 2, 1, "", "process"], [50, 2, 1, "", "reload"], [50, 2, 1, "", "select"], [50, 2, 1, "", "set_method"], [50, 2, 1, "", "set_reference_set"], [50, 2, 1, "", "show"], [50, 2, 1, "", "subset_intersection"], [50, 2, 1, "", "to_array"], [50, 2, 1, "", "to_bool_array"], [50, 2, 1, "", "to_set"]], "pypath.core.annot.InterPro": [[51, 2, 1, "", "__init__"], [51, 2, 1, "", "add_complexes_by_inference"], [51, 2, 1, "", "all_complexes"], [51, 2, 1, "", "all_entities"], [51, 2, 1, "", "all_mirnas"], [51, 2, 1, "", "all_proteins"], [51, 2, 1, "", "all_refs"], [51, 2, 1, "", "annotate_complex"], [51, 2, 1, "", "browse"], [51, 2, 1, "", "complex_inference"], [51, 2, 1, "", "coverage"], [51, 2, 1, "", "curation_effort"], [51, 2, 1, "", "get_names"], [51, 2, 1, "", "get_reference_set"], [51, 2, 1, "", "get_subset"], [51, 2, 1, "", "get_subset_bool_array"], [51, 2, 1, "", "get_values"], [51, 2, 1, "", "labels"], [51, 2, 1, "", "load"], [51, 2, 1, "", "load_data"], [51, 2, 1, "", "load_proteins"], [51, 2, 1, "", "make_df"], [51, 2, 1, "", "numof_entities"], [51, 2, 1, "", "numof_records"], [51, 2, 1, "", "numof_references"], [51, 2, 1, "", "process"], [51, 2, 1, "", "reload"], [51, 2, 1, "", "select"], [51, 2, 1, "", "set_method"], [51, 2, 1, "", "set_reference_set"], [51, 2, 1, "", "show"], [51, 2, 1, "", "subset_intersection"], [51, 2, 1, "", "to_array"], [51, 2, 1, "", "to_bool_array"], [51, 2, 1, "", "to_set"]], "pypath.core.annot.Intogen": [[52, 2, 1, "", "__init__"], [52, 2, 1, "", "add_complexes_by_inference"], [52, 2, 1, "", "all_complexes"], [52, 2, 1, "", "all_entities"], [52, 2, 1, "", "all_mirnas"], [52, 2, 1, "", "all_proteins"], [52, 2, 1, "", "all_refs"], [52, 2, 1, "", "annotate_complex"], [52, 2, 1, "", "browse"], [52, 2, 1, "", "complex_inference"], [52, 2, 1, "", "coverage"], [52, 2, 1, "", "curation_effort"], [52, 2, 1, "", "get_names"], [52, 2, 1, "", "get_reference_set"], [52, 2, 1, "", "get_subset"], [52, 2, 1, "", "get_subset_bool_array"], [52, 2, 1, "", "get_values"], [52, 2, 1, "", "labels"], [52, 2, 1, "", "load"], [52, 2, 1, "", "load_data"], [52, 2, 1, "", "load_proteins"], [52, 2, 1, "", "make_df"], [52, 2, 1, "", "numof_entities"], [52, 2, 1, "", "numof_records"], [52, 2, 1, "", "numof_references"], [52, 2, 1, "", "process"], [52, 2, 1, "", "reload"], [52, 2, 1, "", "select"], [52, 2, 1, "", "set_method"], [52, 2, 1, "", "set_reference_set"], [52, 2, 1, "", "show"], [52, 2, 1, "", "subset_intersection"], [52, 2, 1, "", "to_array"], [52, 2, 1, "", "to_bool_array"], [52, 2, 1, "", "to_set"]], "pypath.core.annot.Italk": [[53, 2, 1, "", "__init__"], [53, 2, 1, "", "add_complexes_by_inference"], [53, 2, 1, "", "all_complexes"], [53, 2, 1, "", "all_entities"], [53, 2, 1, "", "all_mirnas"], [53, 2, 1, "", "all_proteins"], [53, 2, 1, "", "all_refs"], [53, 2, 1, "", "annotate_complex"], [53, 2, 1, "", "browse"], [53, 2, 1, "", "complex_inference"], [53, 2, 1, "", "coverage"], [53, 2, 1, "", "curation_effort"], [53, 2, 1, "", "get_names"], [53, 2, 1, "", "get_reference_set"], [53, 2, 1, "", "get_subset"], [53, 2, 1, "", "get_subset_bool_array"], [53, 2, 1, "", "get_values"], [53, 2, 1, "", "labels"], [53, 2, 1, "", "load"], [53, 2, 1, "", "load_data"], [53, 2, 1, "", "load_proteins"], [53, 2, 1, "", "make_df"], [53, 2, 1, "", "numof_entities"], [53, 2, 1, "", "numof_records"], [53, 2, 1, "", "numof_references"], [53, 2, 1, "", "process"], [53, 2, 1, "", "reload"], [53, 2, 1, "", "select"], [53, 2, 1, "", "set_method"], [53, 2, 1, "", "set_reference_set"], [53, 2, 1, "", "show"], [53, 2, 1, "", "subset_intersection"], [53, 2, 1, "", "to_array"], [53, 2, 1, "", "to_bool_array"], [53, 2, 1, "", "to_set"]], "pypath.core.annot.KeggPathways": [[54, 2, 1, "", "__init__"], [54, 2, 1, "", "add_complexes_by_inference"], [54, 2, 1, "", "all_complexes"], [54, 2, 1, "", "all_entities"], [54, 2, 1, "", "all_mirnas"], [54, 2, 1, "", "all_proteins"], [54, 2, 1, "", "all_refs"], [54, 2, 1, "", "annotate_complex"], [54, 2, 1, "", "browse"], [54, 2, 1, "", "complex_inference"], [54, 2, 1, "", "coverage"], [54, 2, 1, "", "curation_effort"], [54, 2, 1, "", "get_names"], [54, 2, 1, "", "get_reference_set"], [54, 2, 1, "", "get_subset"], [54, 2, 1, "", "get_subset_bool_array"], [54, 2, 1, "", "get_values"], [54, 2, 1, "", "labels"], [54, 2, 1, "", "load"], [54, 2, 1, "", "load_data"], [54, 2, 1, "", "load_proteins"], [54, 2, 1, "", "make_df"], [54, 2, 1, "", "numof_entities"], [54, 2, 1, "", "numof_records"], [54, 2, 1, "", "numof_references"], [54, 2, 1, "", "process"], [54, 2, 1, "", "reload"], [54, 2, 1, "", "select"], [54, 2, 1, "", "set_method"], [54, 2, 1, "", "set_reference_set"], [54, 2, 1, "", "show"], [54, 2, 1, "", "subset_intersection"], [54, 2, 1, "", "to_array"], [54, 2, 1, "", "to_bool_array"], [54, 2, 1, "", "to_set"]], "pypath.core.annot.KeggPathwaysPC": [[55, 2, 1, "", "__init__"], [55, 2, 1, "", "add_complexes_by_inference"], [55, 2, 1, "", "all_complexes"], [55, 2, 1, "", "all_entities"], [55, 2, 1, "", "all_mirnas"], [55, 2, 1, "", "all_proteins"], [55, 2, 1, "", "all_refs"], [55, 2, 1, "", "annotate_complex"], [55, 2, 1, "", "browse"], [55, 2, 1, "", "complex_inference"], [55, 2, 1, "", "coverage"], [55, 2, 1, "", "curation_effort"], [55, 2, 1, "", "get_names"], [55, 2, 1, "", "get_reference_set"], [55, 2, 1, "", "get_subset"], [55, 2, 1, "", "get_subset_bool_array"], [55, 2, 1, "", "get_values"], [55, 2, 1, "", "labels"], [55, 2, 1, "", "load"], [55, 2, 1, "", "load_data"], [55, 2, 1, "", "load_proteins"], [55, 2, 1, "", "make_df"], [55, 2, 1, "", "numof_entities"], [55, 2, 1, "", "numof_records"], [55, 2, 1, "", "numof_references"], [55, 2, 1, "", "process"], [55, 2, 1, "", "reload"], [55, 2, 1, "", "select"], [55, 2, 1, "", "set_method"], [55, 2, 1, "", "set_reference_set"], [55, 2, 1, "", "show"], [55, 2, 1, "", "subset_intersection"], [55, 2, 1, "", "to_array"], [55, 2, 1, "", "to_bool_array"], [55, 2, 1, "", "to_set"]], "pypath.core.annot.Kinasedotcom": [[56, 2, 1, "", "__init__"], [56, 2, 1, "", "add_complexes_by_inference"], [56, 2, 1, "", "all_complexes"], [56, 2, 1, "", "all_entities"], [56, 2, 1, "", "all_mirnas"], [56, 2, 1, "", "all_proteins"], [56, 2, 1, "", "all_refs"], [56, 2, 1, "", "annotate_complex"], [56, 2, 1, "", "browse"], [56, 2, 1, "", "complex_inference"], [56, 2, 1, "", "coverage"], [56, 2, 1, "", "curation_effort"], [56, 2, 1, "", "get_names"], [56, 2, 1, "", "get_reference_set"], [56, 2, 1, "", "get_subset"], [56, 2, 1, "", "get_subset_bool_array"], [56, 2, 1, "", "get_values"], [56, 2, 1, "", "labels"], [56, 2, 1, "", "load"], [56, 2, 1, "", "load_data"], [56, 2, 1, "", "load_proteins"], [56, 2, 1, "", "make_df"], [56, 2, 1, "", "numof_entities"], [56, 2, 1, "", "numof_records"], [56, 2, 1, "", "numof_references"], [56, 2, 1, "", "process"], [56, 2, 1, "", "reload"], [56, 2, 1, "", "select"], [56, 2, 1, "", "set_method"], [56, 2, 1, "", "set_reference_set"], [56, 2, 1, "", "show"], [56, 2, 1, "", "subset_intersection"], [56, 2, 1, "", "to_array"], [56, 2, 1, "", "to_bool_array"], [56, 2, 1, "", "to_set"]], "pypath.core.annot.Kirouac2010": [[57, 2, 1, "", "__init__"], [57, 2, 1, "", "add_complexes_by_inference"], [57, 2, 1, "", "all_complexes"], [57, 2, 1, "", "all_entities"], [57, 2, 1, "", "all_mirnas"], [57, 2, 1, "", "all_proteins"], [57, 2, 1, "", "all_refs"], [57, 2, 1, "", "annotate_complex"], [57, 2, 1, "", "browse"], [57, 2, 1, "", "complex_inference"], [57, 2, 1, "", "coverage"], [57, 2, 1, "", "curation_effort"], [57, 2, 1, "", "get_names"], [57, 2, 1, "", "get_reference_set"], [57, 2, 1, "", "get_subset"], [57, 2, 1, "", "get_subset_bool_array"], [57, 2, 1, "", "get_values"], [57, 2, 1, "", "labels"], [57, 2, 1, "", "load"], [57, 2, 1, "", "load_data"], [57, 2, 1, "", "load_proteins"], [57, 2, 1, "", "make_df"], [57, 2, 1, "", "numof_entities"], [57, 2, 1, "", "numof_records"], [57, 2, 1, "", "numof_references"], [57, 2, 1, "", "process"], [57, 2, 1, "", "reload"], [57, 2, 1, "", "select"], [57, 2, 1, "", "set_method"], [57, 2, 1, "", "set_reference_set"], [57, 2, 1, "", "show"], [57, 2, 1, "", "subset_intersection"], [57, 2, 1, "", "to_array"], [57, 2, 1, "", "to_bool_array"], [57, 2, 1, "", "to_set"]], "pypath.core.annot.Lambert2018": [[58, 2, 1, "", "__init__"], [58, 2, 1, "", "add_complexes_by_inference"], [58, 2, 1, "", "all_complexes"], [58, 2, 1, "", "all_entities"], [58, 2, 1, "", "all_mirnas"], [58, 2, 1, "", "all_proteins"], [58, 2, 1, "", "all_refs"], [58, 2, 1, "", "annotate_complex"], [58, 2, 1, "", "browse"], [58, 2, 1, "", "complex_inference"], [58, 2, 1, "", "coverage"], [58, 2, 1, "", "curation_effort"], [58, 2, 1, "", "get_names"], [58, 2, 1, "", "get_reference_set"], [58, 2, 1, "", "get_subset"], [58, 2, 1, "", "get_subset_bool_array"], [58, 2, 1, "", "get_values"], [58, 2, 1, "", "labels"], [58, 2, 1, "", "load"], [58, 2, 1, "", "load_data"], [58, 2, 1, "", "load_proteins"], [58, 2, 1, "", "make_df"], [58, 2, 1, "", "numof_entities"], [58, 2, 1, "", "numof_records"], [58, 2, 1, "", "numof_references"], [58, 2, 1, "", "process"], [58, 2, 1, "", "reload"], [58, 2, 1, "", "select"], [58, 2, 1, "", "set_method"], [58, 2, 1, "", "set_reference_set"], [58, 2, 1, "", "show"], [58, 2, 1, "", "subset_intersection"], [58, 2, 1, "", "to_array"], [58, 2, 1, "", "to_bool_array"], [58, 2, 1, "", "to_set"]], "pypath.core.annot.LigandReceptor": [[59, 2, 1, "", "__init__"], [59, 2, 1, "", "add_complexes_by_inference"], [59, 2, 1, "", "all_complexes"], [59, 2, 1, "", "all_entities"], [59, 2, 1, "", "all_mirnas"], [59, 2, 1, "", "all_proteins"], [59, 2, 1, "", "all_refs"], [59, 2, 1, "", "annotate_complex"], [59, 2, 1, "", "browse"], [59, 2, 1, "", "complex_inference"], [59, 2, 1, "", "coverage"], [59, 2, 1, "", "curation_effort"], [59, 2, 1, "", "get_names"], [59, 2, 1, "", "get_reference_set"], [59, 2, 1, "", "get_subset"], [59, 2, 1, "", "get_subset_bool_array"], [59, 2, 1, "", "get_values"], [59, 2, 1, "", "labels"], [59, 2, 1, "", "load"], [59, 2, 1, "", "load_data"], [59, 2, 1, "", "load_proteins"], [59, 2, 1, "", "make_df"], [59, 2, 1, "", "numof_entities"], [59, 2, 1, "", "numof_records"], [59, 2, 1, "", "numof_references"], [59, 2, 1, "", "process"], [59, 2, 1, "", "reload"], [59, 2, 1, "", "select"], [59, 2, 1, "", "set_method"], [59, 2, 1, "", "set_reference_set"], [59, 2, 1, "", "show"], [59, 2, 1, "", "subset_intersection"], [59, 2, 1, "", "to_array"], [59, 2, 1, "", "to_bool_array"], [59, 2, 1, "", "to_set"]], "pypath.core.annot.Locate": [[60, 2, 1, "", "__init__"], [60, 2, 1, "", "add_complexes_by_inference"], [60, 2, 1, "", "all_complexes"], [60, 2, 1, "", "all_entities"], [60, 2, 1, "", "all_mirnas"], [60, 2, 1, "", "all_proteins"], [60, 2, 1, "", "all_refs"], [60, 2, 1, "", "annotate_complex"], [60, 2, 1, "", "browse"], [60, 2, 1, "", "complex_inference"], [60, 2, 1, "", "coverage"], [60, 2, 1, "", "curation_effort"], [60, 2, 1, "", "get_names"], [60, 2, 1, "", "get_reference_set"], [60, 2, 1, "", "get_subset"], [60, 2, 1, "", "get_subset_bool_array"], [60, 2, 1, "", "get_values"], [60, 2, 1, "", "labels"], [60, 2, 1, "", "load"], [60, 2, 1, "", "load_data"], [60, 2, 1, "", "load_proteins"], [60, 2, 1, "", "make_df"], [60, 2, 1, "", "numof_entities"], [60, 2, 1, "", "numof_records"], [60, 2, 1, "", "numof_references"], [60, 2, 1, "", "process"], [60, 2, 1, "", "reload"], [60, 2, 1, "", "select"], [60, 2, 1, "", "set_method"], [60, 2, 1, "", "set_reference_set"], [60, 2, 1, "", "show"], [60, 2, 1, "", "subset_intersection"], [60, 2, 1, "", "to_array"], [60, 2, 1, "", "to_bool_array"], [60, 2, 1, "", "to_set"]], "pypath.core.annot.Lrdb": [[61, 2, 1, "", "__init__"], [61, 2, 1, "", "add_complexes_by_inference"], [61, 2, 1, "", "all_complexes"], [61, 2, 1, "", "all_entities"], [61, 2, 1, "", "all_mirnas"], [61, 2, 1, "", "all_proteins"], [61, 2, 1, "", "all_refs"], [61, 2, 1, "", "annotate_complex"], [61, 2, 1, "", "browse"], [61, 2, 1, "", "complex_inference"], [61, 2, 1, "", "coverage"], [61, 2, 1, "", "curation_effort"], [61, 2, 1, "", "get_names"], [61, 2, 1, "", "get_reference_set"], [61, 2, 1, "", "get_subset"], [61, 2, 1, "", "get_subset_bool_array"], [61, 2, 1, "", "get_values"], [61, 2, 1, "", "labels"], [61, 2, 1, "", "load"], [61, 2, 1, "", "load_data"], [61, 2, 1, "", "load_proteins"], [61, 2, 1, "", "make_df"], [61, 2, 1, "", "numof_entities"], [61, 2, 1, "", "numof_records"], [61, 2, 1, "", "numof_references"], [61, 2, 1, "", "process"], [61, 2, 1, "", "reload"], [61, 2, 1, "", "select"], [61, 2, 1, "", "set_method"], [61, 2, 1, "", "set_reference_set"], [61, 2, 1, "", "show"], [61, 2, 1, "", "subset_intersection"], [61, 2, 1, "", "to_array"], [61, 2, 1, "", "to_bool_array"], [61, 2, 1, "", "to_set"]], "pypath.core.annot.Matrisome": [[62, 2, 1, "", "__init__"], [62, 2, 1, "", "add_complexes_by_inference"], [62, 2, 1, "", "all_complexes"], [62, 2, 1, "", "all_entities"], [62, 2, 1, "", "all_mirnas"], [62, 2, 1, "", "all_proteins"], [62, 2, 1, "", "all_refs"], [62, 2, 1, "", "annotate_complex"], [62, 2, 1, "", "browse"], [62, 2, 1, "", "complex_inference"], [62, 2, 1, "", "coverage"], [62, 2, 1, "", "curation_effort"], [62, 2, 1, "", "get_names"], [62, 2, 1, "", "get_reference_set"], [62, 2, 1, "", "get_subset"], [62, 2, 1, "", "get_subset_bool_array"], [62, 2, 1, "", "get_values"], [62, 2, 1, "", "labels"], [62, 2, 1, "", "load"], [62, 2, 1, "", "load_data"], [62, 2, 1, "", "load_proteins"], [62, 2, 1, "", "make_df"], [62, 2, 1, "", "numof_entities"], [62, 2, 1, "", "numof_records"], [62, 2, 1, "", "numof_references"], [62, 2, 1, "", "process"], [62, 2, 1, "", "reload"], [62, 2, 1, "", "select"], [62, 2, 1, "", "set_method"], [62, 2, 1, "", "set_reference_set"], [62, 2, 1, "", "show"], [62, 2, 1, "", "subset_intersection"], [62, 2, 1, "", "to_array"], [62, 2, 1, "", "to_bool_array"], [62, 2, 1, "", "to_set"]], "pypath.core.annot.Matrixdb": [[63, 2, 1, "", "__init__"], [63, 2, 1, "", "add_complexes_by_inference"], [63, 2, 1, "", "all_complexes"], [63, 2, 1, "", "all_entities"], [63, 2, 1, "", "all_mirnas"], [63, 2, 1, "", "all_proteins"], [63, 2, 1, "", "all_refs"], [63, 2, 1, "", "annotate_complex"], [63, 2, 1, "", "browse"], [63, 2, 1, "", "complex_inference"], [63, 2, 1, "", "coverage"], [63, 2, 1, "", "curation_effort"], [63, 2, 1, "", "get_names"], [63, 2, 1, "", "get_reference_set"], [63, 2, 1, "", "get_subset"], [63, 2, 1, "", "get_subset_bool_array"], [63, 2, 1, "", "get_values"], [63, 2, 1, "", "labels"], [63, 2, 1, "", "load"], [63, 2, 1, "", "load_data"], [63, 2, 1, "", "load_proteins"], [63, 2, 1, "", "make_df"], [63, 2, 1, "", "numof_entities"], [63, 2, 1, "", "numof_records"], [63, 2, 1, "", "numof_references"], [63, 2, 1, "", "process"], [63, 2, 1, "", "reload"], [63, 2, 1, "", "select"], [63, 2, 1, "", "set_method"], [63, 2, 1, "", "set_reference_set"], [63, 2, 1, "", "show"], [63, 2, 1, "", "subset_intersection"], [63, 2, 1, "", "to_array"], [63, 2, 1, "", "to_bool_array"], [63, 2, 1, "", "to_set"]], "pypath.core.annot.Mcam": [[64, 2, 1, "", "__init__"], [64, 2, 1, "", "add_complexes_by_inference"], [64, 2, 1, "", "all_complexes"], [64, 2, 1, "", "all_entities"], [64, 2, 1, "", "all_mirnas"], [64, 2, 1, "", "all_proteins"], [64, 2, 1, "", "all_refs"], [64, 2, 1, "", "annotate_complex"], [64, 2, 1, "", "browse"], [64, 2, 1, "", "complex_inference"], [64, 2, 1, "", "coverage"], [64, 2, 1, "", "curation_effort"], [64, 2, 1, "", "get_names"], [64, 2, 1, "", "get_reference_set"], [64, 2, 1, "", "get_subset"], [64, 2, 1, "", "get_subset_bool_array"], [64, 2, 1, "", "get_values"], [64, 2, 1, "", "labels"], [64, 2, 1, "", "load"], [64, 2, 1, "", "load_data"], [64, 2, 1, "", "load_proteins"], [64, 2, 1, "", "make_df"], [64, 2, 1, "", "numof_entities"], [64, 2, 1, "", "numof_records"], [64, 2, 1, "", "numof_references"], [64, 2, 1, "", "process"], [64, 2, 1, "", "reload"], [64, 2, 1, "", "select"], [64, 2, 1, "", "set_method"], [64, 2, 1, "", "set_reference_set"], [64, 2, 1, "", "show"], [64, 2, 1, "", "subset_intersection"], [64, 2, 1, "", "to_array"], [64, 2, 1, "", "to_bool_array"], [64, 2, 1, "", "to_set"]], "pypath.core.annot.Membranome": [[65, 2, 1, "", "__init__"], [65, 2, 1, "", "add_complexes_by_inference"], [65, 2, 1, "", "all_complexes"], [65, 2, 1, "", "all_entities"], [65, 2, 1, "", "all_mirnas"], [65, 2, 1, "", "all_proteins"], [65, 2, 1, "", "all_refs"], [65, 2, 1, "", "annotate_complex"], [65, 2, 1, "", "browse"], [65, 2, 1, "", "complex_inference"], [65, 2, 1, "", "coverage"], [65, 2, 1, "", "curation_effort"], [65, 2, 1, "", "get_names"], [65, 2, 1, "", "get_reference_set"], [65, 2, 1, "", "get_subset"], [65, 2, 1, "", "get_subset_bool_array"], [65, 2, 1, "", "get_values"], [65, 2, 1, "", "labels"], [65, 2, 1, "", "load"], [65, 2, 1, "", "load_data"], [65, 2, 1, "", "load_proteins"], [65, 2, 1, "", "make_df"], [65, 2, 1, "", "numof_entities"], [65, 2, 1, "", "numof_records"], [65, 2, 1, "", "numof_references"], [65, 2, 1, "", "process"], [65, 2, 1, "", "reload"], [65, 2, 1, "", "select"], [65, 2, 1, "", "set_method"], [65, 2, 1, "", "set_reference_set"], [65, 2, 1, "", "show"], [65, 2, 1, "", "subset_intersection"], [65, 2, 1, "", "to_array"], [65, 2, 1, "", "to_bool_array"], [65, 2, 1, "", "to_set"]], "pypath.core.annot.Msigdb": [[66, 2, 1, "", "__init__"], [66, 2, 1, "", "add_complexes_by_inference"], [66, 2, 1, "", "all_complexes"], [66, 2, 1, "", "all_entities"], [66, 2, 1, "", "all_mirnas"], [66, 2, 1, "", "all_proteins"], [66, 2, 1, "", "all_refs"], [66, 2, 1, "", "annotate_complex"], [66, 2, 1, "", "browse"], [66, 2, 1, "", "complex_inference"], [66, 2, 1, "", "coverage"], [66, 2, 1, "", "curation_effort"], [66, 2, 1, "", "get_names"], [66, 2, 1, "", "get_reference_set"], [66, 2, 1, "", "get_subset"], [66, 2, 1, "", "get_subset_bool_array"], [66, 2, 1, "", "get_values"], [66, 2, 1, "", "labels"], [66, 2, 1, "", "load"], [66, 2, 1, "", "load_data"], [66, 2, 1, "", "load_proteins"], [66, 2, 1, "", "make_df"], [66, 2, 1, "", "numof_entities"], [66, 2, 1, "", "numof_records"], [66, 2, 1, "", "numof_references"], [66, 2, 1, "", "process"], [66, 2, 1, "", "reload"], [66, 2, 1, "", "select"], [66, 2, 1, "", "set_method"], [66, 2, 1, "", "set_reference_set"], [66, 2, 1, "", "show"], [66, 2, 1, "", "subset_intersection"], [66, 2, 1, "", "to_array"], [66, 2, 1, "", "to_bool_array"], [66, 2, 1, "", "to_set"]], "pypath.core.annot.NetpathPathways": [[67, 2, 1, "", "__init__"], [67, 2, 1, "", "add_complexes_by_inference"], [67, 2, 1, "", "all_complexes"], [67, 2, 1, "", "all_entities"], [67, 2, 1, "", "all_mirnas"], [67, 2, 1, "", "all_proteins"], [67, 2, 1, "", "all_refs"], [67, 2, 1, "", "annotate_complex"], [67, 2, 1, "", "browse"], [67, 2, 1, "", "complex_inference"], [67, 2, 1, "", "coverage"], [67, 2, 1, "", "curation_effort"], [67, 2, 1, "", "get_names"], [67, 2, 1, "", "get_reference_set"], [67, 2, 1, "", "get_subset"], [67, 2, 1, "", "get_subset_bool_array"], [67, 2, 1, "", "get_values"], [67, 2, 1, "", "labels"], [67, 2, 1, "", "load"], [67, 2, 1, "", "load_data"], [67, 2, 1, "", "load_proteins"], [67, 2, 1, "", "make_df"], [67, 2, 1, "", "numof_entities"], [67, 2, 1, "", "numof_records"], [67, 2, 1, "", "numof_references"], [67, 2, 1, "", "process"], [67, 2, 1, "", "reload"], [67, 2, 1, "", "select"], [67, 2, 1, "", "set_method"], [67, 2, 1, "", "set_reference_set"], [67, 2, 1, "", "show"], [67, 2, 1, "", "subset_intersection"], [67, 2, 1, "", "to_array"], [67, 2, 1, "", "to_bool_array"], [67, 2, 1, "", "to_set"]], "pypath.core.annot.Opm": [[68, 2, 1, "", "__init__"], [68, 2, 1, "", "add_complexes_by_inference"], [68, 2, 1, "", "all_complexes"], [68, 2, 1, "", "all_entities"], [68, 2, 1, "", "all_mirnas"], [68, 2, 1, "", "all_proteins"], [68, 2, 1, "", "all_refs"], [68, 2, 1, "", "annotate_complex"], [68, 2, 1, "", "browse"], [68, 2, 1, "", "complex_inference"], [68, 2, 1, "", "coverage"], [68, 2, 1, "", "curation_effort"], [68, 2, 1, "", "get_names"], [68, 2, 1, "", "get_reference_set"], [68, 2, 1, "", "get_subset"], [68, 2, 1, "", "get_subset_bool_array"], [68, 2, 1, "", "get_values"], [68, 2, 1, "", "labels"], [68, 2, 1, "", "load"], [68, 2, 1, "", "load_data"], [68, 2, 1, "", "load_proteins"], [68, 2, 1, "", "make_df"], [68, 2, 1, "", "numof_entities"], [68, 2, 1, "", "numof_records"], [68, 2, 1, "", "numof_references"], [68, 2, 1, "", "process"], [68, 2, 1, "", "reload"], [68, 2, 1, "", "select"], [68, 2, 1, "", "set_method"], [68, 2, 1, "", "set_reference_set"], [68, 2, 1, "", "show"], [68, 2, 1, "", "subset_intersection"], [68, 2, 1, "", "to_array"], [68, 2, 1, "", "to_bool_array"], [68, 2, 1, "", "to_set"]], "pypath.core.annot.Panglaodb": [[69, 2, 1, "", "__init__"], [69, 2, 1, "", "add_complexes_by_inference"], [69, 2, 1, "", "all_complexes"], [69, 2, 1, "", "all_entities"], [69, 2, 1, "", "all_mirnas"], [69, 2, 1, "", "all_proteins"], [69, 2, 1, "", "all_refs"], [69, 2, 1, "", "annotate_complex"], [69, 2, 1, "", "browse"], [69, 2, 1, "", "complex_inference"], [69, 2, 1, "", "coverage"], [69, 2, 1, "", "curation_effort"], [69, 2, 1, "", "get_names"], [69, 2, 1, "", "get_reference_set"], [69, 2, 1, "", "get_subset"], [69, 2, 1, "", "get_subset_bool_array"], [69, 2, 1, "", "get_values"], [69, 2, 1, "", "labels"], [69, 2, 1, "", "load"], [69, 2, 1, "", "load_data"], [69, 2, 1, "", "load_proteins"], [69, 2, 1, "", "make_df"], [69, 2, 1, "", "numof_entities"], [69, 2, 1, "", "numof_records"], [69, 2, 1, "", "numof_references"], [69, 2, 1, "", "process"], [69, 2, 1, "", "reload"], [69, 2, 1, "", "select"], [69, 2, 1, "", "set_method"], [69, 2, 1, "", "set_reference_set"], [69, 2, 1, "", "show"], [69, 2, 1, "", "subset_intersection"], [69, 2, 1, "", "to_array"], [69, 2, 1, "", "to_bool_array"], [69, 2, 1, "", "to_set"]], "pypath.core.annot.Phobius": [[70, 2, 1, "", "__init__"], [70, 2, 1, "", "add_complexes_by_inference"], [70, 2, 1, "", "all_complexes"], [70, 2, 1, "", "all_entities"], [70, 2, 1, "", "all_mirnas"], [70, 2, 1, "", "all_proteins"], [70, 2, 1, "", "all_refs"], [70, 2, 1, "", "annotate_complex"], [70, 2, 1, "", "browse"], [70, 2, 1, "", "complex_inference"], [70, 2, 1, "", "coverage"], [70, 2, 1, "", "curation_effort"], [70, 2, 1, "", "get_names"], [70, 2, 1, "", "get_reference_set"], [70, 2, 1, "", "get_subset"], [70, 2, 1, "", "get_subset_bool_array"], [70, 2, 1, "", "get_values"], [70, 2, 1, "", "labels"], [70, 2, 1, "", "load"], [70, 2, 1, "", "load_data"], [70, 2, 1, "", "load_proteins"], [70, 2, 1, "", "make_df"], [70, 2, 1, "", "numof_entities"], [70, 2, 1, "", "numof_records"], [70, 2, 1, "", "numof_references"], [70, 2, 1, "", "process"], [70, 2, 1, "", "reload"], [70, 2, 1, "", "select"], [70, 2, 1, "", "set_method"], [70, 2, 1, "", "set_reference_set"], [70, 2, 1, "", "show"], [70, 2, 1, "", "subset_intersection"], [70, 2, 1, "", "to_array"], [70, 2, 1, "", "to_bool_array"], [70, 2, 1, "", "to_set"]], "pypath.core.annot.Phosphatome": [[71, 2, 1, "", "__init__"], [71, 2, 1, "", "add_complexes_by_inference"], [71, 2, 1, "", "all_complexes"], [71, 2, 1, "", "all_entities"], [71, 2, 1, "", "all_mirnas"], [71, 2, 1, "", "all_proteins"], [71, 2, 1, "", "all_refs"], [71, 2, 1, "", "annotate_complex"], [71, 2, 1, "", "browse"], [71, 2, 1, "", "complex_inference"], [71, 2, 1, "", "coverage"], [71, 2, 1, "", "curation_effort"], [71, 2, 1, "", "get_names"], [71, 2, 1, "", "get_reference_set"], [71, 2, 1, "", "get_subset"], [71, 2, 1, "", "get_subset_bool_array"], [71, 2, 1, "", "get_values"], [71, 2, 1, "", "labels"], [71, 2, 1, "", "load"], [71, 2, 1, "", "load_data"], [71, 2, 1, "", "load_proteins"], [71, 2, 1, "", "make_df"], [71, 2, 1, "", "numof_entities"], [71, 2, 1, "", "numof_records"], [71, 2, 1, "", "numof_references"], [71, 2, 1, "", "process"], [71, 2, 1, "", "reload"], [71, 2, 1, "", "select"], [71, 2, 1, "", "set_method"], [71, 2, 1, "", "set_reference_set"], [71, 2, 1, "", "show"], [71, 2, 1, "", "subset_intersection"], [71, 2, 1, "", "to_array"], [71, 2, 1, "", "to_bool_array"], [71, 2, 1, "", "to_set"]], "pypath.core.annot.Progeny": [[72, 2, 1, "", "__init__"], [72, 2, 1, "", "add_complexes_by_inference"], [72, 2, 1, "", "all_complexes"], [72, 2, 1, "", "all_entities"], [72, 2, 1, "", "all_mirnas"], [72, 2, 1, "", "all_proteins"], [72, 2, 1, "", "all_refs"], [72, 2, 1, "", "annotate_complex"], [72, 2, 1, "", "browse"], [72, 2, 1, "", "complex_inference"], [72, 2, 1, "", "coverage"], [72, 2, 1, "", "curation_effort"], [72, 2, 1, "", "get_names"], [72, 2, 1, "", "get_reference_set"], [72, 2, 1, "", "get_subset"], [72, 2, 1, "", "get_subset_bool_array"], [72, 2, 1, "", "get_values"], [72, 2, 1, "", "labels"], [72, 2, 1, "", "load"], [72, 2, 1, "", "load_data"], [72, 2, 1, "", "load_proteins"], [72, 2, 1, "", "make_df"], [72, 2, 1, "", "numof_entities"], [72, 2, 1, "", "numof_records"], [72, 2, 1, "", "numof_references"], [72, 2, 1, "", "process"], [72, 2, 1, "", "reload"], [72, 2, 1, "", "select"], [72, 2, 1, "", "set_method"], [72, 2, 1, "", "set_reference_set"], [72, 2, 1, "", "show"], [72, 2, 1, "", "subset_intersection"], [72, 2, 1, "", "to_array"], [72, 2, 1, "", "to_bool_array"], [72, 2, 1, "", "to_set"]], "pypath.core.annot.Ramilowski2015": [[73, 2, 1, "", "__init__"], [73, 2, 1, "", "add_complexes_by_inference"], [73, 2, 1, "", "all_complexes"], [73, 2, 1, "", "all_entities"], [73, 2, 1, "", "all_mirnas"], [73, 2, 1, "", "all_proteins"], [73, 2, 1, "", "all_refs"], [73, 2, 1, "", "annotate_complex"], [73, 2, 1, "", "browse"], [73, 2, 1, "", "complex_inference"], [73, 2, 1, "", "coverage"], [73, 2, 1, "", "curation_effort"], [73, 2, 1, "", "get_names"], [73, 2, 1, "", "get_reference_set"], [73, 2, 1, "", "get_subset"], [73, 2, 1, "", "get_subset_bool_array"], [73, 2, 1, "", "get_values"], [73, 2, 1, "", "labels"], [73, 2, 1, "", "load"], [73, 2, 1, "", "load_data"], [73, 2, 1, "", "load_proteins"], [73, 2, 1, "", "make_df"], [73, 2, 1, "", "numof_entities"], [73, 2, 1, "", "numof_records"], [73, 2, 1, "", "numof_references"], [73, 2, 1, "", "process"], [73, 2, 1, "", "reload"], [73, 2, 1, "", "select"], [73, 2, 1, "", "set_method"], [73, 2, 1, "", "set_reference_set"], [73, 2, 1, "", "show"], [73, 2, 1, "", "subset_intersection"], [73, 2, 1, "", "to_array"], [73, 2, 1, "", "to_bool_array"], [73, 2, 1, "", "to_set"]], "pypath.core.annot.Ramilowski2015Location": [[74, 2, 1, "", "__init__"], [74, 2, 1, "", "add_complexes_by_inference"], [74, 2, 1, "", "all_complexes"], [74, 2, 1, "", "all_entities"], [74, 2, 1, "", "all_mirnas"], [74, 2, 1, "", "all_proteins"], [74, 2, 1, "", "all_refs"], [74, 2, 1, "", "annotate_complex"], [74, 2, 1, "", "browse"], [74, 2, 1, "", "complex_inference"], [74, 2, 1, "", "coverage"], [74, 2, 1, "", "curation_effort"], [74, 2, 1, "", "get_names"], [74, 2, 1, "", "get_reference_set"], [74, 2, 1, "", "get_subset"], [74, 2, 1, "", "get_subset_bool_array"], [74, 2, 1, "", "get_values"], [74, 2, 1, "", "labels"], [74, 2, 1, "", "load"], [74, 2, 1, "", "load_data"], [74, 2, 1, "", "load_proteins"], [74, 2, 1, "", "make_df"], [74, 2, 1, "", "numof_entities"], [74, 2, 1, "", "numof_records"], [74, 2, 1, "", "numof_references"], [74, 2, 1, "", "process"], [74, 2, 1, "", "reload"], [74, 2, 1, "", "select"], [74, 2, 1, "", "set_method"], [74, 2, 1, "", "set_reference_set"], [74, 2, 1, "", "show"], [74, 2, 1, "", "subset_intersection"], [74, 2, 1, "", "to_array"], [74, 2, 1, "", "to_bool_array"], [74, 2, 1, "", "to_set"]], "pypath.core.annot.Scconnect": [[75, 2, 1, "", "__init__"], [75, 2, 1, "", "add_complexes_by_inference"], [75, 2, 1, "", "all_complexes"], [75, 2, 1, "", "all_entities"], [75, 2, 1, "", "all_mirnas"], [75, 2, 1, "", "all_proteins"], [75, 2, 1, "", "all_refs"], [75, 2, 1, "", "annotate_complex"], [75, 2, 1, "", "browse"], [75, 2, 1, "", "complex_inference"], [75, 2, 1, "", "coverage"], [75, 2, 1, "", "curation_effort"], [75, 2, 1, "", "get_names"], [75, 2, 1, "", "get_reference_set"], [75, 2, 1, "", "get_subset"], [75, 2, 1, "", "get_subset_bool_array"], [75, 2, 1, "", "get_values"], [75, 2, 1, "", "labels"], [75, 2, 1, "", "load"], [75, 2, 1, "", "load_data"], [75, 2, 1, "", "load_proteins"], [75, 2, 1, "", "make_df"], [75, 2, 1, "", "numof_entities"], [75, 2, 1, "", "numof_records"], [75, 2, 1, "", "numof_references"], [75, 2, 1, "", "process"], [75, 2, 1, "", "reload"], [75, 2, 1, "", "select"], [75, 2, 1, "", "set_method"], [75, 2, 1, "", "set_reference_set"], [75, 2, 1, "", "show"], [75, 2, 1, "", "subset_intersection"], [75, 2, 1, "", "to_array"], [75, 2, 1, "", "to_bool_array"], [75, 2, 1, "", "to_set"]], "pypath.core.annot.ScconnectComplex": [[76, 2, 1, "", "__init__"], [76, 2, 1, "", "add_complexes_by_inference"], [76, 2, 1, "", "all_complexes"], [76, 2, 1, "", "all_entities"], [76, 2, 1, "", "all_mirnas"], [76, 2, 1, "", "all_proteins"], [76, 2, 1, "", "all_refs"], [76, 2, 1, "", "annotate_complex"], [76, 2, 1, "", "browse"], [76, 2, 1, "", "complex_inference"], [76, 2, 1, "", "coverage"], [76, 2, 1, "", "curation_effort"], [76, 2, 1, "", "get_names"], [76, 2, 1, "", "get_reference_set"], [76, 2, 1, "", "get_subset"], [76, 2, 1, "", "get_subset_bool_array"], [76, 2, 1, "", "get_values"], [76, 2, 1, "", "labels"], [76, 2, 1, "", "load"], [76, 2, 1, "", "load_data"], [76, 2, 1, "", "load_proteins"], [76, 2, 1, "", "make_df"], [76, 2, 1, "", "numof_entities"], [76, 2, 1, "", "numof_records"], [76, 2, 1, "", "numof_references"], [76, 2, 1, "", "process"], [76, 2, 1, "", "reload"], [76, 2, 1, "", "select"], [76, 2, 1, "", "set_method"], [76, 2, 1, "", "set_reference_set"], [76, 2, 1, "", "show"], [76, 2, 1, "", "subset_intersection"], [76, 2, 1, "", "to_array"], [76, 2, 1, "", "to_bool_array"], [76, 2, 1, "", "to_set"]], "pypath.core.annot.SignalinkFunctions": [[77, 2, 1, "", "__init__"], [77, 2, 1, "", "add_complexes_by_inference"], [77, 2, 1, "", "all_complexes"], [77, 2, 1, "", "all_entities"], [77, 2, 1, "", "all_mirnas"], [77, 2, 1, "", "all_proteins"], [77, 2, 1, "", "all_refs"], [77, 2, 1, "", "annotate_complex"], [77, 2, 1, "", "browse"], [77, 2, 1, "", "complex_inference"], [77, 2, 1, "", "coverage"], [77, 2, 1, "", "curation_effort"], [77, 2, 1, "", "get_names"], [77, 2, 1, "", "get_reference_set"], [77, 2, 1, "", "get_subset"], [77, 2, 1, "", "get_subset_bool_array"], [77, 2, 1, "", "get_values"], [77, 2, 1, "", "labels"], [77, 2, 1, "", "load"], [77, 2, 1, "", "load_data"], [77, 2, 1, "", "load_proteins"], [77, 2, 1, "", "make_df"], [77, 2, 1, "", "numof_entities"], [77, 2, 1, "", "numof_records"], [77, 2, 1, "", "numof_references"], [77, 2, 1, "", "process"], [77, 2, 1, "", "reload"], [77, 2, 1, "", "select"], [77, 2, 1, "", "set_method"], [77, 2, 1, "", "set_reference_set"], [77, 2, 1, "", "show"], [77, 2, 1, "", "subset_intersection"], [77, 2, 1, "", "to_array"], [77, 2, 1, "", "to_bool_array"], [77, 2, 1, "", "to_set"]], "pypath.core.annot.SignalinkPathways": [[78, 2, 1, "", "__init__"], [78, 2, 1, "", "add_complexes_by_inference"], [78, 2, 1, "", "all_complexes"], [78, 2, 1, "", "all_entities"], [78, 2, 1, "", "all_mirnas"], [78, 2, 1, "", "all_proteins"], [78, 2, 1, "", "all_refs"], [78, 2, 1, "", "annotate_complex"], [78, 2, 1, "", "browse"], [78, 2, 1, "", "complex_inference"], [78, 2, 1, "", "coverage"], [78, 2, 1, "", "curation_effort"], [78, 2, 1, "", "get_names"], [78, 2, 1, "", "get_reference_set"], [78, 2, 1, "", "get_subset"], [78, 2, 1, "", "get_subset_bool_array"], [78, 2, 1, "", "get_values"], [78, 2, 1, "", "labels"], [78, 2, 1, "", "load"], [78, 2, 1, "", "load_data"], [78, 2, 1, "", "load_proteins"], [78, 2, 1, "", "make_df"], [78, 2, 1, "", "numof_entities"], [78, 2, 1, "", "numof_records"], [78, 2, 1, "", "numof_references"], [78, 2, 1, "", "process"], [78, 2, 1, "", "reload"], [78, 2, 1, "", "select"], [78, 2, 1, "", "set_method"], [78, 2, 1, "", "set_reference_set"], [78, 2, 1, "", "show"], [78, 2, 1, "", "subset_intersection"], [78, 2, 1, "", "to_array"], [78, 2, 1, "", "to_bool_array"], [78, 2, 1, "", "to_set"]], "pypath.core.annot.SignorPathways": [[79, 2, 1, "", "__init__"], [79, 2, 1, "", "add_complexes_by_inference"], [79, 2, 1, "", "all_complexes"], [79, 2, 1, "", "all_entities"], [79, 2, 1, "", "all_mirnas"], [79, 2, 1, "", "all_proteins"], [79, 2, 1, "", "all_refs"], [79, 2, 1, "", "annotate_complex"], [79, 2, 1, "", "browse"], [79, 2, 1, "", "complex_inference"], [79, 2, 1, "", "coverage"], [79, 2, 1, "", "curation_effort"], [79, 2, 1, "", "get_names"], [79, 2, 1, "", "get_reference_set"], [79, 2, 1, "", "get_subset"], [79, 2, 1, "", "get_subset_bool_array"], [79, 2, 1, "", "get_values"], [79, 2, 1, "", "labels"], [79, 2, 1, "", "load"], [79, 2, 1, "", "load_data"], [79, 2, 1, "", "load_proteins"], [79, 2, 1, "", "make_df"], [79, 2, 1, "", "numof_entities"], [79, 2, 1, "", "numof_records"], [79, 2, 1, "", "numof_references"], [79, 2, 1, "", "process"], [79, 2, 1, "", "reload"], [79, 2, 1, "", "select"], [79, 2, 1, "", "set_method"], [79, 2, 1, "", "set_reference_set"], [79, 2, 1, "", "show"], [79, 2, 1, "", "subset_intersection"], [79, 2, 1, "", "to_array"], [79, 2, 1, "", "to_bool_array"], [79, 2, 1, "", "to_set"]], "pypath.core.annot.Surfaceome": [[80, 2, 1, "", "__init__"], [80, 2, 1, "", "add_complexes_by_inference"], [80, 2, 1, "", "all_complexes"], [80, 2, 1, "", "all_entities"], [80, 2, 1, "", "all_mirnas"], [80, 2, 1, "", "all_proteins"], [80, 2, 1, "", "all_refs"], [80, 2, 1, "", "annotate_complex"], [80, 2, 1, "", "browse"], [80, 2, 1, "", "complex_inference"], [80, 2, 1, "", "coverage"], [80, 2, 1, "", "curation_effort"], [80, 2, 1, "", "get_names"], [80, 2, 1, "", "get_reference_set"], [80, 2, 1, "", "get_subset"], [80, 2, 1, "", "get_subset_bool_array"], [80, 2, 1, "", "get_values"], [80, 2, 1, "", "labels"], [80, 2, 1, "", "load"], [80, 2, 1, "", "load_data"], [80, 2, 1, "", "load_proteins"], [80, 2, 1, "", "make_df"], [80, 2, 1, "", "numof_entities"], [80, 2, 1, "", "numof_records"], [80, 2, 1, "", "numof_references"], [80, 2, 1, "", "process"], [80, 2, 1, "", "reload"], [80, 2, 1, "", "select"], [80, 2, 1, "", "set_method"], [80, 2, 1, "", "set_reference_set"], [80, 2, 1, "", "show"], [80, 2, 1, "", "subset_intersection"], [80, 2, 1, "", "to_array"], [80, 2, 1, "", "to_bool_array"], [80, 2, 1, "", "to_set"]], "pypath.core.annot.Talklr": [[81, 2, 1, "", "__init__"], [81, 2, 1, "", "add_complexes_by_inference"], [81, 2, 1, "", "all_complexes"], [81, 2, 1, "", "all_entities"], [81, 2, 1, "", "all_mirnas"], [81, 2, 1, "", "all_proteins"], [81, 2, 1, "", "all_refs"], [81, 2, 1, "", "annotate_complex"], [81, 2, 1, "", "browse"], [81, 2, 1, "", "complex_inference"], [81, 2, 1, "", "coverage"], [81, 2, 1, "", "curation_effort"], [81, 2, 1, "", "get_names"], [81, 2, 1, "", "get_reference_set"], [81, 2, 1, "", "get_subset"], [81, 2, 1, "", "get_subset_bool_array"], [81, 2, 1, "", "get_values"], [81, 2, 1, "", "labels"], [81, 2, 1, "", "load"], [81, 2, 1, "", "load_data"], [81, 2, 1, "", "load_proteins"], [81, 2, 1, "", "make_df"], [81, 2, 1, "", "numof_entities"], [81, 2, 1, "", "numof_records"], [81, 2, 1, "", "numof_references"], [81, 2, 1, "", "process"], [81, 2, 1, "", "reload"], [81, 2, 1, "", "select"], [81, 2, 1, "", "set_method"], [81, 2, 1, "", "set_reference_set"], [81, 2, 1, "", "show"], [81, 2, 1, "", "subset_intersection"], [81, 2, 1, "", "to_array"], [81, 2, 1, "", "to_bool_array"], [81, 2, 1, "", "to_set"]], "pypath.core.annot.Tcdb": [[82, 2, 1, "", "__init__"], [82, 2, 1, "", "add_complexes_by_inference"], [82, 2, 1, "", "all_complexes"], [82, 2, 1, "", "all_entities"], [82, 2, 1, "", "all_mirnas"], [82, 2, 1, "", "all_proteins"], [82, 2, 1, "", "all_refs"], [82, 2, 1, "", "annotate_complex"], [82, 2, 1, "", "browse"], [82, 2, 1, "", "complex_inference"], [82, 2, 1, "", "coverage"], [82, 2, 1, "", "curation_effort"], [82, 2, 1, "", "get_names"], [82, 2, 1, "", "get_reference_set"], [82, 2, 1, "", "get_subset"], [82, 2, 1, "", "get_subset_bool_array"], [82, 2, 1, "", "get_values"], [82, 2, 1, "", "labels"], [82, 2, 1, "", "load"], [82, 2, 1, "", "load_data"], [82, 2, 1, "", "load_proteins"], [82, 2, 1, "", "make_df"], [82, 2, 1, "", "numof_entities"], [82, 2, 1, "", "numof_records"], [82, 2, 1, "", "numof_references"], [82, 2, 1, "", "process"], [82, 2, 1, "", "reload"], [82, 2, 1, "", "select"], [82, 2, 1, "", "set_method"], [82, 2, 1, "", "set_reference_set"], [82, 2, 1, "", "show"], [82, 2, 1, "", "subset_intersection"], [82, 2, 1, "", "to_array"], [82, 2, 1, "", "to_bool_array"], [82, 2, 1, "", "to_set"]], "pypath.core.annot.Tfcensus": [[83, 2, 1, "", "__init__"], [83, 2, 1, "", "add_complexes_by_inference"], [83, 2, 1, "", "all_complexes"], [83, 2, 1, "", "all_entities"], [83, 2, 1, "", "all_mirnas"], [83, 2, 1, "", "all_proteins"], [83, 2, 1, "", "all_refs"], [83, 2, 1, "", "annotate_complex"], [83, 2, 1, "", "browse"], [83, 2, 1, "", "complex_inference"], [83, 2, 1, "", "coverage"], [83, 2, 1, "", "curation_effort"], [83, 2, 1, "", "get_names"], [83, 2, 1, "", "get_reference_set"], [83, 2, 1, "", "get_subset"], [83, 2, 1, "", "get_subset_bool_array"], [83, 2, 1, "", "get_values"], [83, 2, 1, "", "labels"], [83, 2, 1, "", "load"], [83, 2, 1, "", "load_data"], [83, 2, 1, "", "load_proteins"], [83, 2, 1, "", "make_df"], [83, 2, 1, "", "numof_entities"], [83, 2, 1, "", "numof_records"], [83, 2, 1, "", "numof_references"], [83, 2, 1, "", "process"], [83, 2, 1, "", "reload"], [83, 2, 1, "", "select"], [83, 2, 1, "", "set_method"], [83, 2, 1, "", "set_reference_set"], [83, 2, 1, "", "show"], [83, 2, 1, "", "subset_intersection"], [83, 2, 1, "", "to_array"], [83, 2, 1, "", "to_bool_array"], [83, 2, 1, "", "to_set"]], "pypath.core.annot.Topdb": [[84, 2, 1, "", "__init__"], [84, 2, 1, "", "add_complexes_by_inference"], [84, 2, 1, "", "all_complexes"], [84, 2, 1, "", "all_entities"], [84, 2, 1, "", "all_mirnas"], [84, 2, 1, "", "all_proteins"], [84, 2, 1, "", "all_refs"], [84, 2, 1, "", "annotate_complex"], [84, 2, 1, "", "browse"], [84, 2, 1, "", "complex_inference"], [84, 2, 1, "", "coverage"], [84, 2, 1, "", "curation_effort"], [84, 2, 1, "", "get_names"], [84, 2, 1, "", "get_reference_set"], [84, 2, 1, "", "get_subset"], [84, 2, 1, "", "get_subset_bool_array"], [84, 2, 1, "", "get_values"], [84, 2, 1, "", "labels"], [84, 2, 1, "", "load"], [84, 2, 1, "", "load_data"], [84, 2, 1, "", "load_proteins"], [84, 2, 1, "", "make_df"], [84, 2, 1, "", "numof_entities"], [84, 2, 1, "", "numof_records"], [84, 2, 1, "", "numof_references"], [84, 2, 1, "", "process"], [84, 2, 1, "", "reload"], [84, 2, 1, "", "select"], [84, 2, 1, "", "set_method"], [84, 2, 1, "", "set_reference_set"], [84, 2, 1, "", "show"], [84, 2, 1, "", "subset_intersection"], [84, 2, 1, "", "to_array"], [84, 2, 1, "", "to_bool_array"], [84, 2, 1, "", "to_set"]], "pypath.core.annot.UniprotFamilies": [[85, 2, 1, "", "__init__"], [85, 2, 1, "", "add_complexes_by_inference"], [85, 2, 1, "", "all_complexes"], [85, 2, 1, "", "all_entities"], [85, 2, 1, "", "all_mirnas"], [85, 2, 1, "", "all_proteins"], [85, 2, 1, "", "all_refs"], [85, 2, 1, "", "annotate_complex"], [85, 2, 1, "", "browse"], [85, 2, 1, "", "complex_inference"], [85, 2, 1, "", "coverage"], [85, 2, 1, "", "curation_effort"], [85, 2, 1, "", "get_names"], [85, 2, 1, "", "get_reference_set"], [85, 2, 1, "", "get_subset"], [85, 2, 1, "", "get_subset_bool_array"], [85, 2, 1, "", "get_values"], [85, 2, 1, "", "labels"], [85, 2, 1, "", "load"], [85, 2, 1, "", "load_data"], [85, 2, 1, "", "load_proteins"], [85, 2, 1, "", "make_df"], [85, 2, 1, "", "numof_entities"], [85, 2, 1, "", "numof_records"], [85, 2, 1, "", "numof_references"], [85, 2, 1, "", "process"], [85, 2, 1, "", "reload"], [85, 2, 1, "", "select"], [85, 2, 1, "", "set_method"], [85, 2, 1, "", "set_reference_set"], [85, 2, 1, "", "show"], [85, 2, 1, "", "subset_intersection"], [85, 2, 1, "", "to_array"], [85, 2, 1, "", "to_bool_array"], [85, 2, 1, "", "to_set"]], "pypath.core.annot.UniprotKeywords": [[86, 2, 1, "", "__init__"], [86, 2, 1, "", "add_complexes_by_inference"], [86, 2, 1, "", "all_complexes"], [86, 2, 1, "", "all_entities"], [86, 2, 1, "", "all_mirnas"], [86, 2, 1, "", "all_proteins"], [86, 2, 1, "", "all_refs"], [86, 2, 1, "", "annotate_complex"], [86, 2, 1, "", "browse"], [86, 2, 1, "", "complex_inference"], [86, 2, 1, "", "coverage"], [86, 2, 1, "", "curation_effort"], [86, 2, 1, "", "get_names"], [86, 2, 1, "", "get_reference_set"], [86, 2, 1, "", "get_subset"], [86, 2, 1, "", "get_subset_bool_array"], [86, 2, 1, "", "get_values"], [86, 2, 1, "", "labels"], [86, 2, 1, "", "load"], [86, 2, 1, "", "load_data"], [86, 2, 1, "", "load_proteins"], [86, 2, 1, "", "make_df"], [86, 2, 1, "", "numof_entities"], [86, 2, 1, "", "numof_records"], [86, 2, 1, "", "numof_references"], [86, 2, 1, "", "process"], [86, 2, 1, "", "reload"], [86, 2, 1, "", "select"], [86, 2, 1, "", "set_method"], [86, 2, 1, "", "set_reference_set"], [86, 2, 1, "", "show"], [86, 2, 1, "", "subset_intersection"], [86, 2, 1, "", "to_array"], [86, 2, 1, "", "to_bool_array"], [86, 2, 1, "", "to_set"]], "pypath.core.annot.UniprotLocations": [[87, 2, 1, "", "__init__"], [87, 2, 1, "", "add_complexes_by_inference"], [87, 2, 1, "", "all_complexes"], [87, 2, 1, "", "all_entities"], [87, 2, 1, "", "all_mirnas"], [87, 2, 1, "", "all_proteins"], [87, 2, 1, "", "all_refs"], [87, 2, 1, "", "annotate_complex"], [87, 2, 1, "", "browse"], [87, 2, 1, "", "complex_inference"], [87, 2, 1, "", "coverage"], [87, 2, 1, "", "curation_effort"], [87, 2, 1, "", "get_names"], [87, 2, 1, "", "get_reference_set"], [87, 2, 1, "", "get_subset"], [87, 2, 1, "", "get_subset_bool_array"], [87, 2, 1, "", "get_values"], [87, 2, 1, "", "labels"], [87, 2, 1, "", "load"], [87, 2, 1, "", "load_data"], [87, 2, 1, "", "load_proteins"], [87, 2, 1, "", "make_df"], [87, 2, 1, "", "numof_entities"], [87, 2, 1, "", "numof_records"], [87, 2, 1, "", "numof_references"], [87, 2, 1, "", "process"], [87, 2, 1, "", "reload"], [87, 2, 1, "", "select"], [87, 2, 1, "", "set_method"], [87, 2, 1, "", "set_reference_set"], [87, 2, 1, "", "show"], [87, 2, 1, "", "subset_intersection"], [87, 2, 1, "", "to_array"], [87, 2, 1, "", "to_bool_array"], [87, 2, 1, "", "to_set"]], "pypath.core.annot.UniprotTissues": [[88, 2, 1, "", "__init__"], [88, 2, 1, "", "add_complexes_by_inference"], [88, 2, 1, "", "all_complexes"], [88, 2, 1, "", "all_entities"], [88, 2, 1, "", "all_mirnas"], [88, 2, 1, "", "all_proteins"], [88, 2, 1, "", "all_refs"], [88, 2, 1, "", "annotate_complex"], [88, 2, 1, "", "browse"], [88, 2, 1, "", "complex_inference"], [88, 2, 1, "", "coverage"], [88, 2, 1, "", "curation_effort"], [88, 2, 1, "", "get_names"], [88, 2, 1, "", "get_reference_set"], [88, 2, 1, "", "get_subset"], [88, 2, 1, "", "get_subset_bool_array"], [88, 2, 1, "", "get_values"], [88, 2, 1, "", "labels"], [88, 2, 1, "", "load"], [88, 2, 1, "", "load_data"], [88, 2, 1, "", "load_proteins"], [88, 2, 1, "", "make_df"], [88, 2, 1, "", "numof_entities"], [88, 2, 1, "", "numof_records"], [88, 2, 1, "", "numof_references"], [88, 2, 1, "", "process"], [88, 2, 1, "", "reload"], [88, 2, 1, "", "select"], [88, 2, 1, "", "set_method"], [88, 2, 1, "", "set_reference_set"], [88, 2, 1, "", "show"], [88, 2, 1, "", "subset_intersection"], [88, 2, 1, "", "to_array"], [88, 2, 1, "", "to_bool_array"], [88, 2, 1, "", "to_set"]], "pypath.core.annot.UniprotTopologies": [[89, 2, 1, "", "__init__"], [89, 2, 1, "", "add_complexes_by_inference"], [89, 2, 1, "", "all_complexes"], [89, 2, 1, "", "all_entities"], [89, 2, 1, "", "all_mirnas"], [89, 2, 1, "", "all_proteins"], [89, 2, 1, "", "all_refs"], [89, 2, 1, "", "annotate_complex"], [89, 2, 1, "", "browse"], [89, 2, 1, "", "complex_inference"], [89, 2, 1, "", "coverage"], [89, 2, 1, "", "curation_effort"], [89, 2, 1, "", "get_names"], [89, 2, 1, "", "get_reference_set"], [89, 2, 1, "", "get_subset"], [89, 2, 1, "", "get_subset_bool_array"], [89, 2, 1, "", "get_values"], [89, 2, 1, "", "labels"], [89, 2, 1, "", "load"], [89, 2, 1, "", "load_data"], [89, 2, 1, "", "load_proteins"], [89, 2, 1, "", "make_df"], [89, 2, 1, "", "numof_entities"], [89, 2, 1, "", "numof_records"], [89, 2, 1, "", "numof_references"], [89, 2, 1, "", "process"], [89, 2, 1, "", "reload"], [89, 2, 1, "", "select"], [89, 2, 1, "", "set_method"], [89, 2, 1, "", "set_reference_set"], [89, 2, 1, "", "show"], [89, 2, 1, "", "subset_intersection"], [89, 2, 1, "", "to_array"], [89, 2, 1, "", "to_bool_array"], [89, 2, 1, "", "to_set"]], "pypath.core.annot.Vesiclepedia": [[90, 2, 1, "", "__init__"], [90, 2, 1, "", "add_complexes_by_inference"], [90, 2, 1, "", "all_complexes"], [90, 2, 1, "", "all_entities"], [90, 2, 1, "", "all_mirnas"], [90, 2, 1, "", "all_proteins"], [90, 2, 1, "", "all_refs"], [90, 2, 1, "", "annotate_complex"], [90, 2, 1, "", "browse"], [90, 2, 1, "", "complex_inference"], [90, 2, 1, "", "coverage"], [90, 2, 1, "", "curation_effort"], [90, 2, 1, "", "get_names"], [90, 2, 1, "", "get_reference_set"], [90, 2, 1, "", "get_subset"], [90, 2, 1, "", "get_subset_bool_array"], [90, 2, 1, "", "get_values"], [90, 2, 1, "", "labels"], [90, 2, 1, "", "load"], [90, 2, 1, "", "load_data"], [90, 2, 1, "", "load_proteins"], [90, 2, 1, "", "make_df"], [90, 2, 1, "", "numof_entities"], [90, 2, 1, "", "numof_records"], [90, 2, 1, "", "numof_references"], [90, 2, 1, "", "process"], [90, 2, 1, "", "reload"], [90, 2, 1, "", "select"], [90, 2, 1, "", "set_method"], [90, 2, 1, "", "set_reference_set"], [90, 2, 1, "", "show"], [90, 2, 1, "", "subset_intersection"], [90, 2, 1, "", "to_array"], [90, 2, 1, "", "to_bool_array"], [90, 2, 1, "", "to_set"]], "pypath.core.annot.Wang": [[91, 2, 1, "", "__init__"], [91, 2, 1, "", "add_complexes_by_inference"], [91, 2, 1, "", "all_complexes"], [91, 2, 1, "", "all_entities"], [91, 2, 1, "", "all_mirnas"], [91, 2, 1, "", "all_proteins"], [91, 2, 1, "", "all_refs"], [91, 2, 1, "", "annotate_complex"], [91, 2, 1, "", "browse"], [91, 2, 1, "", "complex_inference"], [91, 2, 1, "", "coverage"], [91, 2, 1, "", "curation_effort"], [91, 2, 1, "", "get_names"], [91, 2, 1, "", "get_reference_set"], [91, 2, 1, "", "get_subset"], [91, 2, 1, "", "get_subset_bool_array"], [91, 2, 1, "", "get_values"], [91, 2, 1, "", "labels"], [91, 2, 1, "", "load"], [91, 2, 1, "", "load_data"], [91, 2, 1, "", "load_proteins"], [91, 2, 1, "", "make_df"], [91, 2, 1, "", "numof_entities"], [91, 2, 1, "", "numof_records"], [91, 2, 1, "", "numof_references"], [91, 2, 1, "", "process"], [91, 2, 1, "", "reload"], [91, 2, 1, "", "select"], [91, 2, 1, "", "set_method"], [91, 2, 1, "", "set_reference_set"], [91, 2, 1, "", "show"], [91, 2, 1, "", "subset_intersection"], [91, 2, 1, "", "to_array"], [91, 2, 1, "", "to_bool_array"], [91, 2, 1, "", "to_set"]], "pypath.core.annot.Zhong2015": [[92, 2, 1, "", "__init__"], [92, 2, 1, "", "add_complexes_by_inference"], [92, 2, 1, "", "all_complexes"], [92, 2, 1, "", "all_entities"], [92, 2, 1, "", "all_mirnas"], [92, 2, 1, "", "all_proteins"], [92, 2, 1, "", "all_refs"], [92, 2, 1, "", "annotate_complex"], [92, 2, 1, "", "browse"], [92, 2, 1, "", "complex_inference"], [92, 2, 1, "", "coverage"], [92, 2, 1, "", "curation_effort"], [92, 2, 1, "", "get_names"], [92, 2, 1, "", "get_reference_set"], [92, 2, 1, "", "get_subset"], [92, 2, 1, "", "get_subset_bool_array"], [92, 2, 1, "", "get_values"], [92, 2, 1, "", "labels"], [92, 2, 1, "", "load"], [92, 2, 1, "", "load_data"], [92, 2, 1, "", "load_proteins"], [92, 2, 1, "", "make_df"], [92, 2, 1, "", "numof_entities"], [92, 2, 1, "", "numof_records"], [92, 2, 1, "", "numof_references"], [92, 2, 1, "", "process"], [92, 2, 1, "", "reload"], [92, 2, 1, "", "select"], [92, 2, 1, "", "set_method"], [92, 2, 1, "", "set_reference_set"], [92, 2, 1, "", "show"], [92, 2, 1, "", "subset_intersection"], [92, 2, 1, "", "to_array"], [92, 2, 1, "", "to_bool_array"], [92, 2, 1, "", "to_set"]], "pypath.core.attrs": [[96, 1, 1, "", "AttributeHandler"]], "pypath.core.attrs.AttributeHandler": [[96, 2, 1, "", "__init__"], [96, 2, 1, "", "serialize"], [96, 2, 1, "", "update_attrs"]], "pypath.core.common": [[98, 3, 1, "", "filter_network_df"]], "pypath.core.complex": [[100, 1, 1, "", "AbstractComplexResource"], [101, 1, 1, "", "CellPhoneDB"], [102, 1, 1, "", "Cellchatdb"], [103, 1, 1, "", "Cellinker"], [104, 1, 1, "", "Compleat"], [105, 1, 1, "", "ComplexAggregator"], [106, 1, 1, "", "ComplexPortal"], [107, 1, 1, "", "Corum"], [108, 1, 1, "", "GuideToPharmacology"], [109, 1, 1, "", "Havugimana"], [110, 1, 1, "", "Hpmr"], [111, 1, 1, "", "Humap"], [112, 1, 1, "", "Humap2"], [113, 1, 1, "", "Icellnet"], [114, 1, 1, "", "Kegg"], [115, 1, 1, "", "Pdb"], [116, 1, 1, "", "Signor"], [117, 1, 1, "", "Spike"], [118, 3, 1, "", "all_complexes"], [119, 3, 1, "", "get_db"], [120, 3, 1, "", "init_db"]], "pypath.core.complex.AbstractComplexResource": [[100, 2, 1, "", "__init__"], [100, 2, 1, "", "load_data"], [100, 2, 1, "", "process"], [100, 2, 1, "", "set_method"]], "pypath.core.complex.CellPhoneDB": [[101, 2, 1, "", "__init__"], [101, 2, 1, "", "load_data"], [101, 2, 1, "", "process"], [101, 2, 1, "", "set_method"]], "pypath.core.complex.Cellchatdb": [[102, 2, 1, "", "__init__"], [102, 2, 1, "", "load_data"], [102, 2, 1, "", "process"], [102, 2, 1, "", "set_method"]], "pypath.core.complex.Cellinker": [[103, 2, 1, "", "__init__"], [103, 2, 1, "", "load_data"], [103, 2, 1, "", "process"], [103, 2, 1, "", "set_method"]], "pypath.core.complex.Compleat": [[104, 2, 1, "", "__init__"], [104, 2, 1, "", "load_data"], [104, 2, 1, "", "process"], [104, 2, 1, "", "set_method"]], "pypath.core.complex.ComplexAggregator": [[105, 2, 1, "", "__init__"], [105, 2, 1, "", "load_data"], [105, 2, 1, "", "process"], [105, 2, 1, "", "reload"], [105, 2, 1, "", "set_method"]], "pypath.core.complex.ComplexPortal": [[106, 2, 1, "", "__init__"], [106, 2, 1, "", "load_data"], [106, 2, 1, "", "process"], [106, 2, 1, "", "set_method"]], "pypath.core.complex.Corum": [[107, 2, 1, "", "__init__"], [107, 2, 1, "", "load_data"], [107, 2, 1, "", "process"], [107, 2, 1, "", "set_method"]], "pypath.core.complex.GuideToPharmacology": [[108, 2, 1, "", "__init__"], [108, 2, 1, "", "load_data"], [108, 2, 1, "", "process"], [108, 2, 1, "", "set_method"]], "pypath.core.complex.Havugimana": [[109, 2, 1, "", "__init__"], [109, 2, 1, "", "load_data"], [109, 2, 1, "", "process"], [109, 2, 1, "", "set_method"]], "pypath.core.complex.Hpmr": [[110, 2, 1, "", "__init__"], [110, 2, 1, "", "load_data"], [110, 2, 1, "", "process"], [110, 2, 1, "", "set_method"]], "pypath.core.complex.Humap": [[111, 2, 1, "", "__init__"], [111, 2, 1, "", "load_data"], [111, 2, 1, "", "process"], [111, 2, 1, "", "set_method"]], "pypath.core.complex.Humap2": [[112, 2, 1, "", "__init__"], [112, 2, 1, "", "load_data"], [112, 2, 1, "", "process"], [112, 2, 1, "", "set_method"]], "pypath.core.complex.Icellnet": [[113, 2, 1, "", "__init__"], [113, 2, 1, "", "load_data"], [113, 2, 1, "", "process"], [113, 2, 1, "", "set_method"]], "pypath.core.complex.Kegg": [[114, 2, 1, "", "__init__"], [114, 2, 1, "", "load_data"], [114, 2, 1, "", "process"], [114, 2, 1, "", "set_method"]], "pypath.core.complex.Pdb": [[115, 2, 1, "", "__init__"], [115, 2, 1, "", "load_data"], [115, 2, 1, "", "process"], [115, 2, 1, "", "set_method"]], "pypath.core.complex.Signor": [[116, 2, 1, "", "__init__"], [116, 2, 1, "", "load_data"], [116, 2, 1, "", "process"], [116, 2, 1, "", "set_method"]], "pypath.core.complex.Spike": [[117, 2, 1, "", "__init__"], [117, 2, 1, "", "load_data"], [117, 2, 1, "", "process"], [117, 2, 1, "", "set_method"]], "pypath.core.entity": [[122, 1, 1, "", "Entity"], [123, 1, 1, "", "EntityKey"], [124, 1, 1, "", "EntityList"]], "pypath.core.entity.Entity": [[122, 2, 1, "", "__init__"], [122, 2, 1, "", "count_entity_type"], [122, 2, 1, "", "filter_entity_type"], [122, 2, 1, "", "serialize"], [122, 2, 1, "", "update_attrs"]], "pypath.core.entity.EntityKey": [[123, 2, 1, "", "__init__"], [123, 2, 1, "", "count"], [123, 4, 1, "", "entity_type"], [123, 4, 1, "", "id_type"], [123, 4, 1, "", "identifier"], [123, 2, 1, "", "index"], [123, 4, 1, "", "taxon"]], "pypath.core.entity.EntityList": [[124, 2, 1, "", "__init__"]], "pypath.core.enz_sub": [[126, 1, 1, "", "EnzymeSubstrateAggregator"], [127, 1, 1, "", "EnzymeSubstrateOrthologyProcessor"], [128, 1, 1, "", "EnzymeSubstrateProcessor"], [129, 3, 1, "", "get_db"], [130, 3, 1, "", "init_db"]], "pypath.core.enz_sub.EnzymeSubstrateAggregator": [[126, 2, 1, "", "__init__"], [126, 2, 1, "", "assign_to_network"], [126, 2, 1, "", "build_list"], [126, 2, 1, "", "unique"]], "pypath.core.enz_sub.EnzymeSubstrateOrthologyProcessor": [[127, 2, 1, "", "__init__"], [127, 2, 1, "", "load_data"], [127, 2, 1, "", "ptm_orthology"], [127, 2, 1, "", "set_inputargs"], [127, 2, 1, "", "set_method"], [127, 2, 1, "", "translate"], [127, 2, 1, "", "translate_site"]], "pypath.core.enz_sub.EnzymeSubstrateProcessor": [[128, 2, 1, "", "__init__"], [128, 2, 1, "", "load_data"], [128, 2, 1, "", "set_inputargs"], [128, 2, 1, "", "set_method"]], "pypath.core.evidence": [[132, 1, 1, "", "Evidence"], [133, 1, 1, "", "Evidences"]], "pypath.core.evidence.Evidence": [[132, 2, 1, "", "__init__"], [132, 2, 1, "", "asdict"], [132, 2, 1, "", "has_interaction_type"], [132, 2, 1, "", "merge"], [132, 5, 1, "", "pubmeds"], [132, 2, 1, "", "reload"], [132, 2, 1, "", "serialize"], [132, 2, 1, "", "update_attrs"]], "pypath.core.evidence.Evidences": [[133, 2, 1, "", "__init__"], [133, 2, 1, "", "asdict"], [133, 5, 1, "", "attrs"], [133, 5, 1, "", "datasets"], [133, 2, 1, "", "has_dataset"], [133, 2, 1, "", "has_interaction_type"], [133, 2, 1, "", "items"], [133, 2, 1, "", "keys"], [133, 2, 1, "", "reload"], [133, 2, 1, "", "serialize_attrs"], [133, 5, 1, "", "simple_dict"]], "pypath.core.interaction": [[135, 1, 1, "", "Interaction"], [136, 1, 1, "", "InteractionDataFrameRecord"], [137, 1, 1, "", "InteractionKey"]], "pypath.core.interaction.Interaction": [[135, 2, 1, "", "__init__"], [135, 2, 1, "", "add_evidence"], [135, 2, 1, "", "add_sign"], [135, 2, 1, "", "asdict"], [135, 2, 1, "", "complex_identifiers_by_data_model"], [135, 2, 1, "", "complex_identifiers_by_interaction_type"], [135, 2, 1, "", "complex_identifiers_by_interaction_type_and_data_model"], [135, 2, 1, "", "complex_identifiers_by_interaction_type_and_data_model_and_resource"], [135, 2, 1, "", "complex_identifiers_by_reference"], [135, 2, 1, "", "complex_identifiers_by_resource"], [135, 2, 1, "", "complex_labels_by_data_model"], [135, 2, 1, "", "complex_labels_by_interaction_type"], [135, 2, 1, "", "complex_labels_by_interaction_type_and_data_model"], [135, 2, 1, "", "complex_labels_by_interaction_type_and_data_model_and_resource"], [135, 2, 1, "", "complex_labels_by_reference"], [135, 2, 1, "", "complex_labels_by_resource"], [135, 2, 1, "", "complexes_by_data_model"], [135, 2, 1, "", "complexes_by_interaction_type"], [135, 2, 1, "", "complexes_by_interaction_type_and_data_model"], [135, 2, 1, "", "complexes_by_interaction_type_and_data_model_and_resource"], [135, 2, 1, "", "complexes_by_reference"], [135, 2, 1, "", "complexes_by_resource"], [135, 2, 1, "", "consensus"], [135, 2, 1, "", "consensus_edges"], [135, 2, 1, "", "count_complex_identifiers"], [135, 2, 1, "", "count_complex_labels"], [135, 2, 1, "", "count_complexes"], [135, 4, 1, "", "count_data_models"], [135, 4, 1, "", "count_degrees_directed"], [135, 4, 1, "", "count_degrees_directed_in"], [135, 4, 1, "", "count_degrees_directed_out"], [135, 4, 1, "", "count_degrees_negative"], [135, 4, 1, "", "count_degrees_negative_in"], [135, 4, 1, "", "count_degrees_negative_out"], [135, 4, 1, "", "count_degrees_non_directed"], [135, 4, 1, "", "count_degrees_positive"], [135, 4, 1, "", "count_degrees_positive_in"], [135, 4, 1, "", "count_degrees_positive_out"], [135, 4, 1, "", "count_degrees_signed"], [135, 4, 1, "", "count_degrees_signed_in"], [135, 4, 1, "", "count_degrees_signed_out"], [135, 4, 1, "", "count_degrees_undirected"], [135, 2, 1, "", "count_entities"], [135, 2, 1, "", "count_identifiers"], [135, 4, 1, "", "count_interaction_types"], [135, 2, 1, "", "count_interactions"], [135, 2, 1, "", "count_interactions_0"], [135, 2, 1, "", "count_interactions_directed"], [135, 2, 1, "", "count_interactions_mutual"], [135, 2, 1, "", "count_interactions_negative"], [135, 2, 1, "", "count_interactions_non_directed"], [135, 2, 1, "", "count_interactions_positive"], [135, 2, 1, "", "count_interactions_signed"], [135, 2, 1, "", "count_interactions_undirected"], [135, 2, 1, "", "count_labels"], [135, 2, 1, "", "count_lncrna_identifiers"], [135, 2, 1, "", "count_lncrna_labels"], [135, 2, 1, "", "count_lncrnas"], [135, 2, 1, "", "count_mirna_identifiers"], [135, 2, 1, "", "count_mirna_labels"], [135, 2, 1, "", "count_mirnas"], [135, 2, 1, "", "count_protein_identifiers"], [135, 2, 1, "", "count_protein_labels"], [135, 2, 1, "", "count_proteins"], [135, 4, 1, "", "count_references"], [135, 4, 1, "", "count_resource_names"], [135, 4, 1, "", "count_resource_names_via"], [135, 4, 1, "", "count_resources"], [135, 4, 1, "", "count_resources_via"], [135, 2, 1, "", "count_small_molecule_identifiers"], [135, 2, 1, "", "count_small_molecule_labels"], [135, 2, 1, "", "count_small_molecules"], [135, 4, 1, "", "data_models_by_data_model"], [135, 4, 1, "", "data_models_by_interaction_type"], [135, 4, 1, "", "data_models_by_interaction_type_and_data_model"], [135, 4, 1, "", "data_models_by_interaction_type_and_data_model_and_resource"], [135, 4, 1, "", "data_models_by_reference"], [135, 4, 1, "", "data_models_by_resource"], [135, 4, 1, "", "datasets_by_data_model"], [135, 4, 1, "", "datasets_by_interaction_type"], [135, 4, 1, "", "datasets_by_interaction_type_and_data_model"], [135, 4, 1, "", "datasets_by_interaction_type_and_data_model_and_resource"], [135, 4, 1, "", "datasets_by_reference"], [135, 4, 1, "", "datasets_by_resource"], [135, 4, 1, "", "degrees_directed_by_data_model"], [135, 4, 1, "", "degrees_directed_by_interaction_type"], [135, 4, 1, "", "degrees_directed_by_interaction_type_and_data_model"], [135, 4, 1, "", "degrees_directed_by_interaction_type_and_data_model_and_resource"], [135, 4, 1, "", "degrees_directed_by_reference"], [135, 4, 1, "", "degrees_directed_by_resource"], [135, 4, 1, "", "degrees_directed_in_by_data_model"], [135, 4, 1, "", "degrees_directed_in_by_interaction_type"], [135, 4, 1, "", "degrees_directed_in_by_interaction_type_and_data_model"], [135, 4, 1, "", "degrees_directed_in_by_interaction_type_and_data_model_and_resource"], [135, 4, 1, "", "degrees_directed_in_by_reference"], [135, 4, 1, "", "degrees_directed_in_by_resource"], [135, 4, 1, "", "degrees_directed_out_by_data_model"], [135, 4, 1, "", "degrees_directed_out_by_interaction_type"], [135, 4, 1, "", "degrees_directed_out_by_interaction_type_and_data_model"], [135, 4, 1, "", "degrees_directed_out_by_interaction_type_and_data_model_and_resource"], [135, 4, 1, "", "degrees_directed_out_by_reference"], [135, 4, 1, "", "degrees_directed_out_by_resource"], [135, 4, 1, "", "degrees_negative_by_data_model"], [135, 4, 1, "", "degrees_negative_by_interaction_type"], [135, 4, 1, "", "degrees_negative_by_interaction_type_and_data_model"], [135, 4, 1, "", "degrees_negative_by_interaction_type_and_data_model_and_resource"], [135, 4, 1, "", "degrees_negative_by_reference"], [135, 4, 1, "", "degrees_negative_by_resource"], [135, 4, 1, "", "degrees_negative_in_by_data_model"], [135, 4, 1, "", "degrees_negative_in_by_interaction_type"], [135, 4, 1, "", "degrees_negative_in_by_interaction_type_and_data_model"], [135, 4, 1, "", "degrees_negative_in_by_interaction_type_and_data_model_and_resource"], [135, 4, 1, "", "degrees_negative_in_by_reference"], [135, 4, 1, "", "degrees_negative_in_by_resource"], [135, 4, 1, "", "degrees_negative_out_by_data_model"], [135, 4, 1, "", "degrees_negative_out_by_interaction_type"], [135, 4, 1, "", "degrees_negative_out_by_interaction_type_and_data_model"], [135, 4, 1, "", "degrees_negative_out_by_interaction_type_and_data_model_and_resource"], [135, 4, 1, "", "degrees_negative_out_by_reference"], [135, 4, 1, "", "degrees_negative_out_by_resource"], [135, 4, 1, "", "degrees_non_directed_by_data_model"], [135, 4, 1, "", "degrees_non_directed_by_interaction_type"], [135, 4, 1, "", "degrees_non_directed_by_interaction_type_and_data_model"], [135, 4, 1, "", "degrees_non_directed_by_interaction_type_and_data_model_and_resource"], [135, 4, 1, "", "degrees_non_directed_by_reference"], [135, 4, 1, "", "degrees_non_directed_by_resource"], [135, 4, 1, "", "degrees_positive_by_data_model"], [135, 4, 1, "", "degrees_positive_by_interaction_type"], [135, 4, 1, "", "degrees_positive_by_interaction_type_and_data_model"], [135, 4, 1, "", "degrees_positive_by_interaction_type_and_data_model_and_resource"], [135, 4, 1, "", "degrees_positive_by_reference"], [135, 4, 1, "", "degrees_positive_by_resource"], [135, 4, 1, "", "degrees_positive_in_by_data_model"], [135, 4, 1, "", "degrees_positive_in_by_interaction_type"], [135, 4, 1, "", "degrees_positive_in_by_interaction_type_and_data_model"], [135, 4, 1, "", "degrees_positive_in_by_interaction_type_and_data_model_and_resource"], [135, 4, 1, "", "degrees_positive_in_by_reference"], [135, 4, 1, "", "degrees_positive_in_by_resource"], [135, 4, 1, "", "degrees_positive_out_by_data_model"], [135, 4, 1, "", "degrees_positive_out_by_interaction_type"], [135, 4, 1, "", "degrees_positive_out_by_interaction_type_and_data_model"], [135, 4, 1, "", "degrees_positive_out_by_interaction_type_and_data_model_and_resource"], [135, 4, 1, "", "degrees_positive_out_by_reference"], [135, 4, 1, "", "degrees_positive_out_by_resource"], [135, 4, 1, "", "degrees_signed_by_data_model"], [135, 4, 1, "", "degrees_signed_by_interaction_type"], [135, 4, 1, "", "degrees_signed_by_interaction_type_and_data_model"], [135, 4, 1, "", "degrees_signed_by_interaction_type_and_data_model_and_resource"], [135, 4, 1, "", "degrees_signed_by_reference"], [135, 4, 1, "", "degrees_signed_by_resource"], [135, 4, 1, "", "degrees_signed_in_by_data_model"], [135, 4, 1, "", "degrees_signed_in_by_interaction_type"], [135, 4, 1, "", "degrees_signed_in_by_interaction_type_and_data_model"], [135, 4, 1, "", "degrees_signed_in_by_interaction_type_and_data_model_and_resource"], [135, 4, 1, "", "degrees_signed_in_by_reference"], [135, 4, 1, "", "degrees_signed_in_by_resource"], [135, 4, 1, "", "degrees_signed_out_by_data_model"], [135, 4, 1, "", "degrees_signed_out_by_interaction_type"], [135, 4, 1, "", "degrees_signed_out_by_interaction_type_and_data_model"], [135, 4, 1, "", "degrees_signed_out_by_interaction_type_and_data_model_and_resource"], [135, 4, 1, "", "degrees_signed_out_by_reference"], [135, 4, 1, "", "degrees_signed_out_by_resource"], [135, 4, 1, "", "degrees_undirected_by_data_model"], [135, 4, 1, "", "degrees_undirected_by_interaction_type"], [135, 4, 1, "", "degrees_undirected_by_interaction_type_and_data_model"], [135, 4, 1, "", "degrees_undirected_by_interaction_type_and_data_model_and_resource"], [135, 4, 1, "", "degrees_undirected_by_reference"], [135, 4, 1, "", "degrees_undirected_by_resource"], [135, 2, 1, "", "direction_key"], [135, 2, 1, "", "dorothea_level"], [135, 2, 1, "", "dorothea_levels"], [135, 2, 1, "", "entities_by_data_model"], [135, 2, 1, "", "entities_by_interaction_type"], [135, 2, 1, "", "entities_by_interaction_type_and_data_model"], [135, 2, 1, "", "entities_by_interaction_type_and_data_model_and_resource"], [135, 2, 1, "", "entities_by_reference"], [135, 2, 1, "", "entities_by_resource"], [135, 2, 1, "", "evaluate_evidences"], [135, 2, 1, "", "generate_df_records"], [135, 2, 1, "", "get_attr"], [135, 2, 1, "", "get_complex_identifiers"], [135, 2, 1, "", "get_complex_labels"], [135, 2, 1, "", "get_complexes"], [135, 4, 1, "", "get_data_models"], [135, 4, 1, "", "get_datasets"], [135, 2, 1, "", "get_degrees"], [135, 4, 1, "", "get_degrees_directed"], [135, 4, 1, "", "get_degrees_directed_in"], [135, 4, 1, "", "get_degrees_directed_out"], [135, 4, 1, "", "get_degrees_negative"], [135, 4, 1, "", "get_degrees_negative_in"], [135, 4, 1, "", "get_degrees_negative_out"], [135, 4, 1, "", "get_degrees_non_directed"], [135, 4, 1, "", "get_degrees_positive"], [135, 4, 1, "", "get_degrees_positive_in"], [135, 4, 1, "", "get_degrees_positive_out"], [135, 4, 1, "", "get_degrees_signed"], [135, 4, 1, "", "get_degrees_signed_in"], [135, 4, 1, "", "get_degrees_signed_out"], [135, 4, 1, "", "get_degrees_undirected"], [135, 2, 1, "", "get_direction"], [135, 2, 1, "", "get_directions"], [135, 2, 1, "", "get_entities"], [135, 2, 1, "", "get_identifiers"], [135, 4, 1, "", "get_interaction_types"], [135, 2, 1, "", "get_interactions"], [135, 2, 1, "", "get_interactions_0"], [135, 2, 1, "", "get_interactions_directed"], [135, 2, 1, "", "get_interactions_mutual"], [135, 2, 1, "", "get_interactions_negative"], [135, 2, 1, "", "get_interactions_non_directed"], [135, 2, 1, "", "get_interactions_non_directed_0"], [135, 2, 1, "", "get_interactions_positive"], [135, 2, 1, "", "get_interactions_signed"], [135, 2, 1, "", "get_interactions_undirected"], [135, 2, 1, "", "get_interactions_undirected_0"], [135, 2, 1, "", "get_labels"], [135, 2, 1, "", "get_lncrna_identifiers"], [135, 2, 1, "", "get_lncrna_labels"], [135, 2, 1, "", "get_lncrnas"], [135, 2, 1, "", "get_mirna_identifiers"], [135, 2, 1, "", "get_mirna_labels"], [135, 2, 1, "", "get_mirnas"], [135, 2, 1, "", "get_protein_identifiers"], [135, 2, 1, "", "get_protein_labels"], [135, 2, 1, "", "get_proteins"], [135, 4, 1, "", "get_references"], [135, 4, 1, "", "get_resource_names"], [135, 4, 1, "", "get_resource_names_via"], [135, 4, 1, "", "get_resources"], [135, 4, 1, "", "get_resources_via"], [135, 2, 1, "", "get_sign"], [135, 2, 1, "", "get_small_molecule_identifiers"], [135, 2, 1, "", "get_small_molecule_labels"], [135, 2, 1, "", "get_small_molecules"], [135, 2, 1, "", "has_sign"], [135, 2, 1, "", "identifiers_by_data_model"], [135, 2, 1, "", "identifiers_by_interaction_type"], [135, 2, 1, "", "identifiers_by_interaction_type_and_data_model"], [135, 2, 1, "", "identifiers_by_interaction_type_and_data_model_and_resource"], [135, 2, 1, "", "identifiers_by_reference"], [135, 2, 1, "", "identifiers_by_resource"], [135, 4, 1, "", "interaction_types_by_data_model"], [135, 4, 1, "", "interaction_types_by_interaction_type"], [135, 4, 1, "", "interaction_types_by_interaction_type_and_data_model"], [135, 4, 1, "", "interaction_types_by_interaction_type_and_data_model_and_resource"], [135, 4, 1, "", "interaction_types_by_reference"], [135, 4, 1, "", "interaction_types_by_resource"], [135, 2, 1, "", "interactions_0_by_data_model"], [135, 2, 1, "", "interactions_0_by_interaction_type"], [135, 2, 1, "", "interactions_0_by_interaction_type_and_data_model"], [135, 2, 1, "", "interactions_0_by_interaction_type_and_data_model_and_resource"], [135, 2, 1, "", "interactions_0_by_reference"], [135, 2, 1, "", "interactions_0_by_resource"], [135, 2, 1, "", "interactions_by_data_model"], [135, 2, 1, "", "interactions_by_interaction_type"], [135, 2, 1, "", "interactions_by_interaction_type_and_data_model"], [135, 2, 1, "", "interactions_by_interaction_type_and_data_model_and_resource"], [135, 2, 1, "", "interactions_by_reference"], [135, 2, 1, "", "interactions_by_resource"], [135, 2, 1, "", "interactions_directed_by_data_model"], [135, 2, 1, "", "interactions_directed_by_interaction_type"], [135, 2, 1, "", "interactions_directed_by_interaction_type_and_data_model"], [135, 2, 1, "", "interactions_directed_by_interaction_type_and_data_model_and_resource"], [135, 2, 1, "", "interactions_directed_by_reference"], [135, 2, 1, "", "interactions_directed_by_resource"], [135, 2, 1, "", "interactions_mutual_by_data_model"], [135, 2, 1, "", "interactions_mutual_by_interaction_type"], [135, 2, 1, "", "interactions_mutual_by_interaction_type_and_data_model"], [135, 2, 1, "", "interactions_mutual_by_interaction_type_and_data_model_and_resource"], [135, 2, 1, "", "interactions_mutual_by_reference"], [135, 2, 1, "", "interactions_mutual_by_resource"], [135, 2, 1, "", "interactions_negative_by_data_model"], [135, 2, 1, "", "interactions_negative_by_interaction_type"], [135, 2, 1, "", "interactions_negative_by_interaction_type_and_data_model"], [135, 2, 1, "", "interactions_negative_by_interaction_type_and_data_model_and_resource"], [135, 2, 1, "", "interactions_negative_by_reference"], [135, 2, 1, "", "interactions_negative_by_resource"], [135, 2, 1, "", "interactions_non_directed_0_by_data_model"], [135, 2, 1, "", "interactions_non_directed_0_by_interaction_type"], [135, 2, 1, "", "interactions_non_directed_0_by_interaction_type_and_data_model"], [135, 2, 1, "", "interactions_non_directed_0_by_interaction_type_and_data_model_and_resource"], [135, 2, 1, "", "interactions_non_directed_0_by_reference"], [135, 2, 1, "", "interactions_non_directed_0_by_resource"], [135, 2, 1, "", "interactions_non_directed_by_data_model"], [135, 2, 1, "", "interactions_non_directed_by_interaction_type"], [135, 2, 1, "", "interactions_non_directed_by_interaction_type_and_data_model"], [135, 2, 1, "", "interactions_non_directed_by_interaction_type_and_data_model_and_resource"], [135, 2, 1, "", "interactions_non_directed_by_reference"], [135, 2, 1, "", "interactions_non_directed_by_resource"], [135, 2, 1, "", "interactions_positive_by_data_model"], [135, 2, 1, "", "interactions_positive_by_interaction_type"], [135, 2, 1, "", "interactions_positive_by_interaction_type_and_data_model"], [135, 2, 1, "", "interactions_positive_by_interaction_type_and_data_model_and_resource"], [135, 2, 1, "", "interactions_positive_by_reference"], [135, 2, 1, "", "interactions_positive_by_resource"], [135, 2, 1, "", "interactions_signed_by_data_model"], [135, 2, 1, "", "interactions_signed_by_interaction_type"], [135, 2, 1, "", "interactions_signed_by_interaction_type_and_data_model"], [135, 2, 1, "", "interactions_signed_by_interaction_type_and_data_model_and_resource"], [135, 2, 1, "", "interactions_signed_by_reference"], [135, 2, 1, "", "interactions_signed_by_resource"], [135, 2, 1, "", "interactions_undirected_0_by_data_model"], [135, 2, 1, "", "interactions_undirected_0_by_interaction_type"], [135, 2, 1, "", "interactions_undirected_0_by_interaction_type_and_data_model"], [135, 2, 1, "", "interactions_undirected_0_by_interaction_type_and_data_model_and_resource"], [135, 2, 1, "", "interactions_undirected_0_by_reference"], [135, 2, 1, "", "interactions_undirected_0_by_resource"], [135, 2, 1, "", "interactions_undirected_by_data_model"], [135, 2, 1, "", "interactions_undirected_by_interaction_type"], [135, 2, 1, "", "interactions_undirected_by_interaction_type_and_data_model"], [135, 2, 1, "", "interactions_undirected_by_interaction_type_and_data_model_and_resource"], [135, 2, 1, "", "interactions_undirected_by_reference"], [135, 2, 1, "", "interactions_undirected_by_resource"], [135, 2, 1, "", "is_directed"], [135, 2, 1, "", "is_directed_by_resources"], [135, 2, 1, "", "is_inhibition"], [135, 2, 1, "", "is_loop"], [135, 2, 1, "", "is_mutual"], [135, 2, 1, "", "is_mutual_by_resources"], [135, 2, 1, "", "is_stimulation"], [135, 2, 1, "", "iter_evidences"], [135, 2, 1, "", "iter_match_evidences"], [135, 2, 1, "", "labels_by_data_model"], [135, 2, 1, "", "labels_by_interaction_type"], [135, 2, 1, "", "labels_by_interaction_type_and_data_model"], [135, 2, 1, "", "labels_by_interaction_type_and_data_model_and_resource"], [135, 2, 1, "", "labels_by_reference"], [135, 2, 1, "", "labels_by_resource"], [135, 2, 1, "", "lncrna_identifiers_by_data_model"], [135, 2, 1, "", "lncrna_identifiers_by_interaction_type"], [135, 2, 1, "", "lncrna_identifiers_by_interaction_type_and_data_model"], [135, 2, 1, "", "lncrna_identifiers_by_interaction_type_and_data_model_and_resource"], [135, 2, 1, "", "lncrna_identifiers_by_reference"], [135, 2, 1, "", "lncrna_identifiers_by_resource"], [135, 2, 1, "", "lncrna_labels_by_data_model"], [135, 2, 1, "", "lncrna_labels_by_interaction_type"], [135, 2, 1, "", "lncrna_labels_by_interaction_type_and_data_model"], [135, 2, 1, "", "lncrna_labels_by_interaction_type_and_data_model_and_resource"], [135, 2, 1, "", "lncrna_labels_by_reference"], [135, 2, 1, "", "lncrna_labels_by_resource"], [135, 2, 1, "", "lncrnas_by_data_model"], [135, 2, 1, "", "lncrnas_by_interaction_type"], [135, 2, 1, "", "lncrnas_by_interaction_type_and_data_model"], [135, 2, 1, "", "lncrnas_by_interaction_type_and_data_model_and_resource"], [135, 2, 1, "", "lncrnas_by_reference"], [135, 2, 1, "", "lncrnas_by_resource"], [135, 2, 1, "", "majority_dir"], [135, 2, 1, "", "majority_sign"], [135, 2, 1, "", "merge"], [135, 2, 1, "", "mirna_identifiers_by_data_model"], [135, 2, 1, "", "mirna_identifiers_by_interaction_type"], [135, 2, 1, "", "mirna_identifiers_by_interaction_type_and_data_model"], [135, 2, 1, "", "mirna_identifiers_by_interaction_type_and_data_model_and_resource"], [135, 2, 1, "", "mirna_identifiers_by_reference"], [135, 2, 1, "", "mirna_identifiers_by_resource"], [135, 2, 1, "", "mirna_labels_by_data_model"], [135, 2, 1, "", "mirna_labels_by_interaction_type"], [135, 2, 1, "", "mirna_labels_by_interaction_type_and_data_model"], [135, 2, 1, "", "mirna_labels_by_interaction_type_and_data_model_and_resource"], [135, 2, 1, "", "mirna_labels_by_reference"], [135, 2, 1, "", "mirna_labels_by_resource"], [135, 2, 1, "", "mirnas_by_data_model"], [135, 2, 1, "", "mirnas_by_interaction_type"], [135, 2, 1, "", "mirnas_by_interaction_type_and_data_model"], [135, 2, 1, "", "mirnas_by_interaction_type_and_data_model_and_resource"], [135, 2, 1, "", "mirnas_by_reference"], [135, 2, 1, "", "mirnas_by_resource"], [135, 2, 1, "", "negative_a_b"], [135, 2, 1, "", "negative_b_a"], [135, 2, 1, "", "negative_resources_a_b"], [135, 2, 1, "", "negative_resources_b_a"], [135, 2, 1, "", "negative_reverse"], [135, 2, 1, "", "negative_straight"], [135, 2, 1, "", "positive_a_b"], [135, 2, 1, "", "positive_b_a"], [135, 2, 1, "", "positive_resources_a_b"], [135, 2, 1, "", "positive_resources_b_a"], [135, 2, 1, "", "positive_reverse"], [135, 2, 1, "", "positive_straight"], [135, 2, 1, "", "protein_identifiers_by_data_model"], [135, 2, 1, "", "protein_identifiers_by_interaction_type"], [135, 2, 1, "", "protein_identifiers_by_interaction_type_and_data_model"], [135, 2, 1, "", "protein_identifiers_by_interaction_type_and_data_model_and_resource"], [135, 2, 1, "", "protein_identifiers_by_reference"], [135, 2, 1, "", "protein_identifiers_by_resource"], [135, 2, 1, "", "protein_labels_by_data_model"], [135, 2, 1, "", "protein_labels_by_interaction_type"], [135, 2, 1, "", "protein_labels_by_interaction_type_and_data_model"], [135, 2, 1, "", "protein_labels_by_interaction_type_and_data_model_and_resource"], [135, 2, 1, "", "protein_labels_by_reference"], [135, 2, 1, "", "protein_labels_by_resource"], [135, 2, 1, "", "proteins_by_data_model"], [135, 2, 1, "", "proteins_by_interaction_type"], [135, 2, 1, "", "proteins_by_interaction_type_and_data_model"], [135, 2, 1, "", "proteins_by_interaction_type_and_data_model_and_resource"], [135, 2, 1, "", "proteins_by_reference"], [135, 2, 1, "", "proteins_by_resource"], [135, 4, 1, "", "references_by_data_model"], [135, 4, 1, "", "references_by_interaction_type"], [135, 4, 1, "", "references_by_interaction_type_and_data_model"], [135, 4, 1, "", "references_by_interaction_type_and_data_model_and_resource"], [135, 4, 1, "", "references_by_reference"], [135, 4, 1, "", "references_by_resource"], [135, 2, 1, "", "reload"], [135, 4, 1, "", "resource_names_by_data_model"], [135, 4, 1, "", "resource_names_by_interaction_type"], [135, 4, 1, "", "resource_names_by_interaction_type_and_data_model"], [135, 4, 1, "", "resource_names_by_interaction_type_and_data_model_and_resource"], [135, 4, 1, "", "resource_names_by_reference"], [135, 4, 1, "", "resource_names_by_resource"], [135, 4, 1, "", "resource_names_via_by_data_model"], [135, 4, 1, "", "resource_names_via_by_interaction_type"], [135, 4, 1, "", "resource_names_via_by_interaction_type_and_data_model"], [135, 4, 1, "", "resource_names_via_by_interaction_type_and_data_model_and_resource"], [135, 4, 1, "", "resource_names_via_by_reference"], [135, 4, 1, "", "resource_names_via_by_resource"], [135, 2, 1, "", "resources_a_b"], [135, 2, 1, "", "resources_b_a"], [135, 4, 1, "", "resources_by_data_model"], [135, 4, 1, "", "resources_by_interaction_type"], [135, 4, 1, "", "resources_by_interaction_type_and_data_model"], [135, 4, 1, "", "resources_by_interaction_type_and_data_model_and_resource"], [135, 4, 1, "", "resources_by_reference"], [135, 4, 1, "", "resources_by_resource"], [135, 2, 1, "", "resources_undirected"], [135, 4, 1, "", "resources_via_by_data_model"], [135, 4, 1, "", "resources_via_by_interaction_type"], [135, 4, 1, "", "resources_via_by_interaction_type_and_data_model"], [135, 4, 1, "", "resources_via_by_interaction_type_and_data_model_and_resource"], [135, 4, 1, "", "resources_via_by_reference"], [135, 4, 1, "", "resources_via_by_resource"], [135, 2, 1, "", "serialize"], [135, 2, 1, "", "serialize_attrs"], [135, 2, 1, "", "serialize_evidences"], [135, 2, 1, "", "small_molecule_identifiers_by_data_model"], [135, 2, 1, "", "small_molecule_identifiers_by_interaction_type"], [135, 2, 1, "", "small_molecule_identifiers_by_interaction_type_and_data_model"], [135, 2, 1, "", "small_molecule_identifiers_by_interaction_type_and_data_model_and_resource"], [135, 2, 1, "", "small_molecule_identifiers_by_reference"], [135, 2, 1, "", "small_molecule_identifiers_by_resource"], [135, 2, 1, "", "small_molecule_labels_by_data_model"], [135, 2, 1, "", "small_molecule_labels_by_interaction_type"], [135, 2, 1, "", "small_molecule_labels_by_interaction_type_and_data_model"], [135, 2, 1, "", "small_molecule_labels_by_interaction_type_and_data_model_and_resource"], [135, 2, 1, "", "small_molecule_labels_by_reference"], [135, 2, 1, "", "small_molecule_labels_by_resource"], [135, 2, 1, "", "small_molecules_by_data_model"], [135, 2, 1, "", "small_molecules_by_interaction_type"], [135, 2, 1, "", "small_molecules_by_interaction_type_and_data_model"], [135, 2, 1, "", "small_molecules_by_interaction_type_and_data_model_and_resource"], [135, 2, 1, "", "small_molecules_by_reference"], [135, 2, 1, "", "small_molecules_by_resource"], [135, 2, 1, "", "source"], [135, 2, 1, "", "sources_reverse"], [135, 2, 1, "", "sources_straight"], [135, 2, 1, "", "sources_undirected"], [135, 2, 1, "", "src"], [135, 2, 1, "", "src_by_resource"], [135, 2, 1, "", "target"], [135, 2, 1, "", "tgt"], [135, 2, 1, "", "tgt_by_resource"], [135, 2, 1, "", "translate"], [135, 2, 1, "", "unset_dir"], [135, 2, 1, "", "unset_direction"], [135, 2, 1, "", "unset_interaction_type"], [135, 2, 1, "", "unset_sign"], [135, 2, 1, "", "update_attrs"], [135, 2, 1, "", "which_directions"], [135, 2, 1, "", "which_dirs"], [135, 2, 1, "", "which_signs"]], "pypath.core.interaction.InteractionDataFrameRecord": [[136, 2, 1, "", "__init__"], [136, 2, 1, "", "count"], [136, 4, 1, "", "directed"], [136, 4, 1, "", "dmodel"], [136, 4, 1, "", "effect"], [136, 4, 1, "", "id_a"], [136, 4, 1, "", "id_b"], [136, 2, 1, "", "index"], [136, 4, 1, "", "references"], [136, 4, 1, "", "sources"], [136, 4, 1, "", "type"], [136, 4, 1, "", "type_a"], [136, 4, 1, "", "type_b"]], "pypath.core.interaction.InteractionKey": [[137, 2, 1, "", "__init__"], [137, 2, 1, "", "count"], [137, 4, 1, "", "entity_a"], [137, 4, 1, "", "entity_b"], [137, 2, 1, "", "index"]], "pypath.core.intercell": [[139, 1, 1, "", "IntercellAnnotation"], [140, 3, 1, "", "get_db"], [141, 3, 1, "", "init_db"]], "pypath.core.intercell.IntercellAnnotation": [[139, 2, 1, "", "__init__"], [139, 2, 1, "", "browse"], [139, 2, 1, "", "class_to_class_connections"], [139, 2, 1, "", "classes_by_entity"], [139, 2, 1, "", "counts"], [139, 2, 1, "", "counts_by_class"], [139, 2, 1, "", "create_class"], [139, 2, 1, "", "degree_inter_class_network"], [139, 2, 1, "", "filter"], [139, 2, 1, "", "filter_classes"], [139, 2, 1, "", "filter_interclass_network"], [139, 2, 1, "", "get_class"], [139, 2, 1, "", "get_df"], [139, 2, 1, "", "get_interclass_network_df"], [139, 2, 1, "", "get_parents"], [139, 2, 1, "", "get_resource"], [139, 2, 1, "", "get_resources"], [139, 2, 1, "", "labels"], [139, 2, 1, "", "make_df"], [139, 2, 1, "", "network_df"], [139, 2, 1, "", "populate_classes"], [139, 2, 1, "", "populate_scores"], [139, 2, 1, "", "process_annot"], [139, 2, 1, "", "quality_check_table"], [139, 2, 1, "", "register_network"], [139, 2, 1, "", "reload"], [139, 2, 1, "", "resources_in_category"], [139, 2, 1, "", "select"], [139, 2, 1, "", "set_interclass_network_df"], [139, 2, 1, "", "show"], [139, 2, 1, "", "update_parents"]], "pypath.core.intercell_annot": [[143, 6, 1, "", "excludes"]], "pypath.core.network": [[145, 1, 1, "", "Network"], [146, 1, 1, "", "NetworkEntityCollection"], [147, 1, 1, "", "NetworkStatsRecord"], [148, 3, 1, "", "get_db"], [149, 3, 1, "", "init_db"]], "pypath.core.network.Network": [[145, 2, 1, "", "__init__"], [145, 4, 1, "", "activated_by"], [145, 4, 1, "", "activates"], [145, 2, 1, "", "add_interaction"], [145, 2, 1, "", "add_node"], [145, 4, 1, "", "collect_complex_identifiers"], [145, 4, 1, "", "collect_complex_labels"], [145, 4, 1, "", "collect_complexes"], [145, 4, 1, "", "collect_curation_effort"], [145, 4, 1, "", "collect_data_models"], [145, 4, 1, "", "collect_datasets"], [145, 4, 1, "", "collect_degrees_directed"], [145, 4, 1, "", "collect_degrees_directed_in"], [145, 4, 1, "", "collect_degrees_directed_out"], [145, 4, 1, "", "collect_degrees_negative"], [145, 4, 1, "", "collect_degrees_negative_in"], [145, 4, 1, "", "collect_degrees_negative_out"], [145, 4, 1, "", "collect_degrees_non_directed"], [145, 4, 1, "", "collect_degrees_positive"], [145, 4, 1, "", "collect_degrees_positive_in"], [145, 4, 1, "", "collect_degrees_positive_out"], [145, 4, 1, "", "collect_degrees_signed"], [145, 4, 1, "", "collect_degrees_signed_in"], [145, 4, 1, "", "collect_degrees_signed_out"], [145, 4, 1, "", "collect_degrees_undirected"], [145, 4, 1, "", "collect_entities"], [145, 4, 1, "", "collect_evidences"], [145, 4, 1, "", "collect_identifiers"], [145, 4, 1, "", "collect_interaction_types"], [145, 4, 1, "", "collect_interactions"], [145, 4, 1, "", "collect_interactions_0"], [145, 4, 1, "", "collect_interactions_directed"], [145, 4, 1, "", "collect_interactions_mutual"], [145, 4, 1, "", "collect_interactions_negative"], [145, 4, 1, "", "collect_interactions_non_directed"], [145, 4, 1, "", "collect_interactions_non_directed_0"], [145, 4, 1, "", "collect_interactions_positive"], [145, 4, 1, "", "collect_interactions_signed"], [145, 4, 1, "", "collect_interactions_undirected"], [145, 4, 1, "", "collect_interactions_undirected_0"], [145, 4, 1, "", "collect_labels"], [145, 4, 1, "", "collect_lncrna_identifiers"], [145, 4, 1, "", "collect_lncrna_labels"], [145, 4, 1, "", "collect_lncrnas"], [145, 4, 1, "", "collect_mirna_identifiers"], [145, 4, 1, "", "collect_mirna_labels"], [145, 4, 1, "", "collect_mirnas"], [145, 4, 1, "", "collect_protein_identifiers"], [145, 4, 1, "", "collect_protein_labels"], [145, 4, 1, "", "collect_proteins"], [145, 4, 1, "", "collect_references"], [145, 4, 1, "", "collect_resource_names"], [145, 4, 1, "", "collect_resource_names_via"], [145, 4, 1, "", "collect_resources"], [145, 4, 1, "", "collect_resources_via"], [145, 4, 1, "", "collect_small_molecule_identifiers"], [145, 4, 1, "", "collect_small_molecule_labels"], [145, 4, 1, "", "collect_small_molecules"], [145, 2, 1, "", "collectri"], [145, 4, 1, "", "complex_identifiers_by_data_model"], [145, 4, 1, "", "complex_identifiers_by_interaction_type"], [145, 4, 1, "", "complex_identifiers_by_interaction_type_and_data_model"], [145, 4, 1, "", "complex_identifiers_by_interaction_type_and_data_model_and_resource"], [145, 4, 1, "", "complex_identifiers_by_reference"], [145, 4, 1, "", "complex_identifiers_by_resource"], [145, 4, 1, "", "complex_labels_by_data_model"], [145, 4, 1, "", "complex_labels_by_interaction_type"], [145, 4, 1, "", "complex_labels_by_interaction_type_and_data_model"], [145, 4, 1, "", "complex_labels_by_interaction_type_and_data_model_and_resource"], [145, 4, 1, "", "complex_labels_by_reference"], [145, 4, 1, "", "complex_labels_by_resource"], [145, 4, 1, "", "complexes_by_data_model"], [145, 4, 1, "", "complexes_by_interaction_type"], [145, 4, 1, "", "complexes_by_interaction_type_and_data_model"], [145, 4, 1, "", "complexes_by_interaction_type_and_data_model_and_resource"], [145, 4, 1, "", "complexes_by_reference"], [145, 4, 1, "", "complexes_by_resource"], [145, 4, 1, "", "count_activated_by"], [145, 4, 1, "", "count_activates"], [145, 4, 1, "", "count_complex_identifiers"], [145, 4, 1, "", "count_complex_identifiers_by_data_model"], [145, 4, 1, "", "count_complex_identifiers_by_interaction_type"], [145, 4, 1, "", "count_complex_identifiers_by_interaction_type_and_data_model"], [145, 4, 1, "", "count_complex_identifiers_by_interaction_type_and_data_model_and_resource"], [145, 4, 1, "", "count_complex_identifiers_by_reference"], [145, 4, 1, "", "count_complex_identifiers_by_resource"], [145, 4, 1, "", "count_complex_labels"], [145, 4, 1, "", "count_complex_labels_by_data_model"], [145, 4, 1, "", "count_complex_labels_by_interaction_type"], [145, 4, 1, "", "count_complex_labels_by_interaction_type_and_data_model"], [145, 4, 1, "", "count_complex_labels_by_interaction_type_and_data_model_and_resource"], [145, 4, 1, "", "count_complex_labels_by_reference"], [145, 4, 1, "", "count_complex_labels_by_resource"], [145, 4, 1, "", "count_complexes"], [145, 4, 1, "", "count_complexes_by_data_model"], [145, 4, 1, "", "count_complexes_by_interaction_type"], [145, 4, 1, "", "count_complexes_by_interaction_type_and_data_model"], [145, 4, 1, "", "count_complexes_by_interaction_type_and_data_model_and_resource"], [145, 4, 1, "", "count_complexes_by_reference"], [145, 4, 1, "", "count_complexes_by_resource"], [145, 4, 1, "", "count_curation_effort"], [145, 4, 1, "", "count_curation_effort_by_data_model"], [145, 4, 1, "", "count_curation_effort_by_interaction_type"], [145, 4, 1, "", "count_curation_effort_by_interaction_type_and_data_model"], [145, 4, 1, "", "count_curation_effort_by_interaction_type_and_data_model_and_resource"], [145, 4, 1, "", "count_curation_effort_by_reference"], [145, 4, 1, "", "count_curation_effort_by_resource"], [145, 4, 1, "", "count_data_models"], [145, 4, 1, "", "count_data_models_by_data_model"], [145, 4, 1, "", "count_data_models_by_interaction_type"], [145, 4, 1, "", "count_data_models_by_interaction_type_and_data_model"], [145, 4, 1, "", "count_data_models_by_interaction_type_and_data_model_and_resource"], [145, 4, 1, "", "count_data_models_by_reference"], [145, 4, 1, "", "count_data_models_by_resource"], [145, 4, 1, "", "count_datasets"], [145, 4, 1, "", "count_datasets_by_data_model"], [145, 4, 1, "", "count_datasets_by_interaction_type"], [145, 4, 1, "", "count_datasets_by_interaction_type_and_data_model"], [145, 4, 1, "", "count_datasets_by_interaction_type_and_data_model_and_resource"], [145, 4, 1, "", "count_datasets_by_reference"], [145, 4, 1, "", "count_datasets_by_resource"], [145, 4, 1, "", "count_degrees_directed"], [145, 4, 1, "", "count_degrees_directed_by_data_model"], [145, 4, 1, "", "count_degrees_directed_by_interaction_type"], [145, 4, 1, "", "count_degrees_directed_by_interaction_type_and_data_model"], [145, 4, 1, "", "count_degrees_directed_by_interaction_type_and_data_model_and_resource"], [145, 4, 1, "", "count_degrees_directed_by_reference"], [145, 4, 1, "", "count_degrees_directed_by_resource"], [145, 4, 1, "", "count_degrees_directed_in"], [145, 4, 1, "", "count_degrees_directed_in_by_data_model"], [145, 4, 1, "", "count_degrees_directed_in_by_interaction_type"], [145, 4, 1, "", "count_degrees_directed_in_by_interaction_type_and_data_model"], [145, 4, 1, "", "count_degrees_directed_in_by_interaction_type_and_data_model_and_resource"], [145, 4, 1, "", "count_degrees_directed_in_by_reference"], [145, 4, 1, "", "count_degrees_directed_in_by_resource"], [145, 4, 1, "", "count_degrees_directed_out"], [145, 4, 1, "", "count_degrees_directed_out_by_data_model"], [145, 4, 1, "", "count_degrees_directed_out_by_interaction_type"], [145, 4, 1, "", "count_degrees_directed_out_by_interaction_type_and_data_model"], [145, 4, 1, "", "count_degrees_directed_out_by_interaction_type_and_data_model_and_resource"], [145, 4, 1, "", "count_degrees_directed_out_by_reference"], [145, 4, 1, "", "count_degrees_directed_out_by_resource"], [145, 4, 1, "", "count_degrees_negative"], [145, 4, 1, "", "count_degrees_negative_by_data_model"], [145, 4, 1, "", "count_degrees_negative_by_interaction_type"], [145, 4, 1, "", "count_degrees_negative_by_interaction_type_and_data_model"], [145, 4, 1, "", "count_degrees_negative_by_interaction_type_and_data_model_and_resource"], [145, 4, 1, "", "count_degrees_negative_by_reference"], [145, 4, 1, "", "count_degrees_negative_by_resource"], [145, 4, 1, "", "count_degrees_negative_in"], [145, 4, 1, "", "count_degrees_negative_in_by_data_model"], [145, 4, 1, "", "count_degrees_negative_in_by_interaction_type"], [145, 4, 1, "", "count_degrees_negative_in_by_interaction_type_and_data_model"], [145, 4, 1, "", "count_degrees_negative_in_by_interaction_type_and_data_model_and_resource"], [145, 4, 1, "", "count_degrees_negative_in_by_reference"], [145, 4, 1, "", "count_degrees_negative_in_by_resource"], [145, 4, 1, "", "count_degrees_negative_out"], [145, 4, 1, "", "count_degrees_negative_out_by_data_model"], [145, 4, 1, "", "count_degrees_negative_out_by_interaction_type"], [145, 4, 1, "", "count_degrees_negative_out_by_interaction_type_and_data_model"], [145, 4, 1, "", "count_degrees_negative_out_by_interaction_type_and_data_model_and_resource"], [145, 4, 1, "", "count_degrees_negative_out_by_reference"], [145, 4, 1, "", "count_degrees_negative_out_by_resource"], [145, 4, 1, "", "count_degrees_non_directed"], [145, 4, 1, "", "count_degrees_non_directed_by_data_model"], [145, 4, 1, "", "count_degrees_non_directed_by_interaction_type"], [145, 4, 1, "", "count_degrees_non_directed_by_interaction_type_and_data_model"], [145, 4, 1, "", "count_degrees_non_directed_by_interaction_type_and_data_model_and_resource"], [145, 4, 1, "", "count_degrees_non_directed_by_reference"], [145, 4, 1, "", "count_degrees_non_directed_by_resource"], [145, 4, 1, "", "count_degrees_positive"], [145, 4, 1, "", "count_degrees_positive_by_data_model"], [145, 4, 1, "", "count_degrees_positive_by_interaction_type"], [145, 4, 1, "", "count_degrees_positive_by_interaction_type_and_data_model"], [145, 4, 1, "", "count_degrees_positive_by_interaction_type_and_data_model_and_resource"], [145, 4, 1, "", "count_degrees_positive_by_reference"], [145, 4, 1, "", "count_degrees_positive_by_resource"], [145, 4, 1, "", "count_degrees_positive_in"], [145, 4, 1, "", "count_degrees_positive_in_by_data_model"], [145, 4, 1, "", "count_degrees_positive_in_by_interaction_type"], [145, 4, 1, "", "count_degrees_positive_in_by_interaction_type_and_data_model"], [145, 4, 1, "", "count_degrees_positive_in_by_interaction_type_and_data_model_and_resource"], [145, 4, 1, "", "count_degrees_positive_in_by_reference"], [145, 4, 1, "", "count_degrees_positive_in_by_resource"], [145, 4, 1, "", "count_degrees_positive_out"], [145, 4, 1, "", "count_degrees_positive_out_by_data_model"], [145, 4, 1, "", "count_degrees_positive_out_by_interaction_type"], [145, 4, 1, "", "count_degrees_positive_out_by_interaction_type_and_data_model"], [145, 4, 1, "", "count_degrees_positive_out_by_interaction_type_and_data_model_and_resource"], [145, 4, 1, "", "count_degrees_positive_out_by_reference"], [145, 4, 1, "", "count_degrees_positive_out_by_resource"], [145, 4, 1, "", "count_degrees_signed"], [145, 4, 1, "", "count_degrees_signed_by_data_model"], [145, 4, 1, "", "count_degrees_signed_by_interaction_type"], [145, 4, 1, "", "count_degrees_signed_by_interaction_type_and_data_model"], [145, 4, 1, "", "count_degrees_signed_by_interaction_type_and_data_model_and_resource"], [145, 4, 1, "", "count_degrees_signed_by_reference"], [145, 4, 1, "", "count_degrees_signed_by_resource"], [145, 4, 1, "", "count_degrees_signed_in"], [145, 4, 1, "", "count_degrees_signed_in_by_data_model"], [145, 4, 1, "", "count_degrees_signed_in_by_interaction_type"], [145, 4, 1, "", "count_degrees_signed_in_by_interaction_type_and_data_model"], [145, 4, 1, "", "count_degrees_signed_in_by_interaction_type_and_data_model_and_resource"], [145, 4, 1, "", "count_degrees_signed_in_by_reference"], [145, 4, 1, "", "count_degrees_signed_in_by_resource"], [145, 4, 1, "", "count_degrees_signed_out"], [145, 4, 1, "", "count_degrees_signed_out_by_data_model"], [145, 4, 1, "", "count_degrees_signed_out_by_interaction_type"], [145, 4, 1, "", "count_degrees_signed_out_by_interaction_type_and_data_model"], [145, 4, 1, "", "count_degrees_signed_out_by_interaction_type_and_data_model_and_resource"], [145, 4, 1, "", "count_degrees_signed_out_by_reference"], [145, 4, 1, "", "count_degrees_signed_out_by_resource"], [145, 4, 1, "", "count_degrees_undirected"], [145, 4, 1, "", "count_degrees_undirected_by_data_model"], [145, 4, 1, "", "count_degrees_undirected_by_interaction_type"], [145, 4, 1, "", "count_degrees_undirected_by_interaction_type_and_data_model"], [145, 4, 1, "", "count_degrees_undirected_by_interaction_type_and_data_model_and_resource"], [145, 4, 1, "", "count_degrees_undirected_by_reference"], [145, 4, 1, "", "count_degrees_undirected_by_resource"], [145, 4, 1, "", "count_entities"], [145, 4, 1, "", "count_entities_by_data_model"], [145, 4, 1, "", "count_entities_by_interaction_type"], [145, 4, 1, "", "count_entities_by_interaction_type_and_data_model"], [145, 4, 1, "", "count_entities_by_interaction_type_and_data_model_and_resource"], [145, 4, 1, "", "count_entities_by_reference"], [145, 4, 1, "", "count_entities_by_resource"], [145, 4, 1, "", "count_evidences"], [145, 4, 1, "", "count_evidences_by_data_model"], [145, 4, 1, "", "count_evidences_by_interaction_type"], [145, 4, 1, "", "count_evidences_by_interaction_type_and_data_model"], [145, 4, 1, "", "count_evidences_by_interaction_type_and_data_model_and_resource"], [145, 4, 1, "", "count_evidences_by_reference"], [145, 4, 1, "", "count_evidences_by_resource"], [145, 4, 1, "", "count_identifiers"], [145, 4, 1, "", "count_identifiers_by_data_model"], [145, 4, 1, "", "count_identifiers_by_interaction_type"], [145, 4, 1, "", "count_identifiers_by_interaction_type_and_data_model"], [145, 4, 1, "", "count_identifiers_by_interaction_type_and_data_model_and_resource"], [145, 4, 1, "", "count_identifiers_by_reference"], [145, 4, 1, "", "count_identifiers_by_resource"], [145, 4, 1, "", "count_interaction_types"], [145, 4, 1, "", "count_interaction_types_by_data_model"], [145, 4, 1, "", "count_interaction_types_by_interaction_type"], [145, 4, 1, "", "count_interaction_types_by_interaction_type_and_data_model"], [145, 4, 1, "", "count_interaction_types_by_interaction_type_and_data_model_and_resource"], [145, 4, 1, "", "count_interaction_types_by_reference"], [145, 4, 1, "", "count_interaction_types_by_resource"], [145, 4, 1, "", "count_interactions"], [145, 4, 1, "", "count_interactions_0"], [145, 4, 1, "", "count_interactions_0_by_data_model"], [145, 4, 1, "", "count_interactions_0_by_interaction_type"], [145, 4, 1, "", "count_interactions_0_by_interaction_type_and_data_model"], [145, 4, 1, "", "count_interactions_0_by_interaction_type_and_data_model_and_resource"], [145, 4, 1, "", "count_interactions_0_by_reference"], [145, 4, 1, "", "count_interactions_0_by_resource"], [145, 4, 1, "", "count_interactions_by_data_model"], [145, 4, 1, "", "count_interactions_by_interaction_type"], [145, 4, 1, "", "count_interactions_by_interaction_type_and_data_model"], [145, 4, 1, "", "count_interactions_by_interaction_type_and_data_model_and_resource"], [145, 4, 1, "", "count_interactions_by_reference"], [145, 4, 1, "", "count_interactions_by_resource"], [145, 4, 1, "", "count_interactions_directed"], [145, 4, 1, "", "count_interactions_directed_by_data_model"], [145, 4, 1, "", "count_interactions_directed_by_interaction_type"], [145, 4, 1, "", "count_interactions_directed_by_interaction_type_and_data_model"], [145, 4, 1, "", "count_interactions_directed_by_interaction_type_and_data_model_and_resource"], [145, 4, 1, "", "count_interactions_directed_by_reference"], [145, 4, 1, "", "count_interactions_directed_by_resource"], [145, 4, 1, "", "count_interactions_mutual"], [145, 4, 1, "", "count_interactions_mutual_by_data_model"], [145, 4, 1, "", "count_interactions_mutual_by_interaction_type"], [145, 4, 1, "", "count_interactions_mutual_by_interaction_type_and_data_model"], [145, 4, 1, "", "count_interactions_mutual_by_interaction_type_and_data_model_and_resource"], [145, 4, 1, "", "count_interactions_mutual_by_reference"], [145, 4, 1, "", "count_interactions_mutual_by_resource"], [145, 4, 1, "", "count_interactions_negative"], [145, 4, 1, "", "count_interactions_negative_by_data_model"], [145, 4, 1, "", "count_interactions_negative_by_interaction_type"], [145, 4, 1, "", "count_interactions_negative_by_interaction_type_and_data_model"], [145, 4, 1, "", "count_interactions_negative_by_interaction_type_and_data_model_and_resource"], [145, 4, 1, "", "count_interactions_negative_by_reference"], [145, 4, 1, "", "count_interactions_negative_by_resource"], [145, 4, 1, "", "count_interactions_non_directed"], [145, 4, 1, "", "count_interactions_non_directed_0"], [145, 4, 1, "", "count_interactions_non_directed_0_by_data_model"], [145, 4, 1, "", "count_interactions_non_directed_0_by_interaction_type"], [145, 4, 1, "", "count_interactions_non_directed_0_by_interaction_type_and_data_model"], [145, 4, 1, "", "count_interactions_non_directed_0_by_interaction_type_and_data_model_and_resource"], [145, 4, 1, "", "count_interactions_non_directed_0_by_reference"], [145, 4, 1, "", "count_interactions_non_directed_0_by_resource"], [145, 4, 1, "", "count_interactions_non_directed_by_data_model"], [145, 4, 1, "", "count_interactions_non_directed_by_interaction_type"], [145, 4, 1, "", "count_interactions_non_directed_by_interaction_type_and_data_model"], [145, 4, 1, "", "count_interactions_non_directed_by_interaction_type_and_data_model_and_resource"], [145, 4, 1, "", "count_interactions_non_directed_by_reference"], [145, 4, 1, "", "count_interactions_non_directed_by_resource"], [145, 4, 1, "", "count_interactions_positive"], [145, 4, 1, "", "count_interactions_positive_by_data_model"], [145, 4, 1, "", "count_interactions_positive_by_interaction_type"], [145, 4, 1, "", "count_interactions_positive_by_interaction_type_and_data_model"], [145, 4, 1, "", "count_interactions_positive_by_interaction_type_and_data_model_and_resource"], [145, 4, 1, "", "count_interactions_positive_by_reference"], [145, 4, 1, "", "count_interactions_positive_by_resource"], [145, 4, 1, "", "count_interactions_signed"], [145, 4, 1, "", "count_interactions_signed_by_data_model"], [145, 4, 1, "", "count_interactions_signed_by_interaction_type"], [145, 4, 1, "", "count_interactions_signed_by_interaction_type_and_data_model"], [145, 4, 1, "", "count_interactions_signed_by_interaction_type_and_data_model_and_resource"], [145, 4, 1, "", "count_interactions_signed_by_reference"], [145, 4, 1, "", "count_interactions_signed_by_resource"], [145, 4, 1, "", "count_interactions_undirected"], [145, 4, 1, "", "count_interactions_undirected_0"], [145, 4, 1, "", "count_interactions_undirected_0_by_data_model"], [145, 4, 1, "", "count_interactions_undirected_0_by_interaction_type"], [145, 4, 1, "", "count_interactions_undirected_0_by_interaction_type_and_data_model"], [145, 4, 1, "", "count_interactions_undirected_0_by_interaction_type_and_data_model_and_resource"], [145, 4, 1, "", "count_interactions_undirected_0_by_reference"], [145, 4, 1, "", "count_interactions_undirected_0_by_resource"], [145, 4, 1, "", "count_interactions_undirected_by_data_model"], [145, 4, 1, "", "count_interactions_undirected_by_interaction_type"], [145, 4, 1, "", "count_interactions_undirected_by_interaction_type_and_data_model"], [145, 4, 1, "", "count_interactions_undirected_by_interaction_type_and_data_model_and_resource"], [145, 4, 1, "", "count_interactions_undirected_by_reference"], [145, 4, 1, "", "count_interactions_undirected_by_resource"], [145, 4, 1, "", "count_labels"], [145, 4, 1, "", "count_labels_by_data_model"], [145, 4, 1, "", "count_labels_by_interaction_type"], [145, 4, 1, "", "count_labels_by_interaction_type_and_data_model"], [145, 4, 1, "", "count_labels_by_interaction_type_and_data_model_and_resource"], [145, 4, 1, "", "count_labels_by_reference"], [145, 4, 1, "", "count_labels_by_resource"], [145, 4, 1, "", "count_lncrna_identifiers"], [145, 4, 1, "", "count_lncrna_identifiers_by_data_model"], [145, 4, 1, "", "count_lncrna_identifiers_by_interaction_type"], [145, 4, 1, "", "count_lncrna_identifiers_by_interaction_type_and_data_model"], [145, 4, 1, "", "count_lncrna_identifiers_by_interaction_type_and_data_model_and_resource"], [145, 4, 1, "", "count_lncrna_identifiers_by_reference"], [145, 4, 1, "", "count_lncrna_identifiers_by_resource"], [145, 4, 1, "", "count_lncrna_labels"], [145, 4, 1, "", "count_lncrna_labels_by_data_model"], [145, 4, 1, "", "count_lncrna_labels_by_interaction_type"], [145, 4, 1, "", "count_lncrna_labels_by_interaction_type_and_data_model"], [145, 4, 1, "", "count_lncrna_labels_by_interaction_type_and_data_model_and_resource"], [145, 4, 1, "", "count_lncrna_labels_by_reference"], [145, 4, 1, "", "count_lncrna_labels_by_resource"], [145, 4, 1, "", "count_lncrnas"], [145, 4, 1, "", "count_lncrnas_by_data_model"], [145, 4, 1, "", "count_lncrnas_by_interaction_type"], [145, 4, 1, "", "count_lncrnas_by_interaction_type_and_data_model"], [145, 4, 1, "", "count_lncrnas_by_interaction_type_and_data_model_and_resource"], [145, 4, 1, "", "count_lncrnas_by_reference"], [145, 4, 1, "", "count_lncrnas_by_resource"], [145, 4, 1, "", "count_mirna_identifiers"], [145, 4, 1, "", "count_mirna_identifiers_by_data_model"], [145, 4, 1, "", "count_mirna_identifiers_by_interaction_type"], [145, 4, 1, "", "count_mirna_identifiers_by_interaction_type_and_data_model"], [145, 4, 1, "", "count_mirna_identifiers_by_interaction_type_and_data_model_and_resource"], [145, 4, 1, "", "count_mirna_identifiers_by_reference"], [145, 4, 1, "", "count_mirna_identifiers_by_resource"], [145, 4, 1, "", "count_mirna_labels"], [145, 4, 1, "", "count_mirna_labels_by_data_model"], [145, 4, 1, "", "count_mirna_labels_by_interaction_type"], [145, 4, 1, "", "count_mirna_labels_by_interaction_type_and_data_model"], [145, 4, 1, "", "count_mirna_labels_by_interaction_type_and_data_model_and_resource"], [145, 4, 1, "", "count_mirna_labels_by_reference"], [145, 4, 1, "", "count_mirna_labels_by_resource"], [145, 4, 1, "", "count_mirnas"], [145, 4, 1, "", "count_mirnas_by_data_model"], [145, 4, 1, "", "count_mirnas_by_interaction_type"], [145, 4, 1, "", "count_mirnas_by_interaction_type_and_data_model"], [145, 4, 1, "", "count_mirnas_by_interaction_type_and_data_model_and_resource"], [145, 4, 1, "", "count_mirnas_by_reference"], [145, 4, 1, "", "count_mirnas_by_resource"], [145, 2, 1, "", "count_partners"], [145, 4, 1, "", "count_post_transcriptionally_activated_by"], [145, 4, 1, "", "count_post_transcriptionally_activates"], [145, 4, 1, "", "count_post_transcriptionally_regulated_by"], [145, 4, 1, "", "count_post_transcriptionally_regulates"], [145, 4, 1, "", "count_post_transcriptionally_suppressed_by"], [145, 4, 1, "", "count_post_transcriptionally_suppresses"], [145, 4, 1, "", "count_post_translationally_activated_by"], [145, 4, 1, "", "count_post_translationally_activates"], [145, 4, 1, "", "count_post_translationally_regulated_by"], [145, 4, 1, "", "count_post_translationally_regulates"], [145, 4, 1, "", "count_post_translationally_suppressed_by"], [145, 4, 1, "", "count_post_translationally_suppresses"], [145, 4, 1, "", "count_protein_identifiers"], [145, 4, 1, "", "count_protein_identifiers_by_data_model"], [145, 4, 1, "", "count_protein_identifiers_by_interaction_type"], [145, 4, 1, "", "count_protein_identifiers_by_interaction_type_and_data_model"], [145, 4, 1, "", "count_protein_identifiers_by_interaction_type_and_data_model_and_resource"], [145, 4, 1, "", "count_protein_identifiers_by_reference"], [145, 4, 1, "", "count_protein_identifiers_by_resource"], [145, 4, 1, "", "count_protein_labels"], [145, 4, 1, "", "count_protein_labels_by_data_model"], [145, 4, 1, "", "count_protein_labels_by_interaction_type"], [145, 4, 1, "", "count_protein_labels_by_interaction_type_and_data_model"], [145, 4, 1, "", "count_protein_labels_by_interaction_type_and_data_model_and_resource"], [145, 4, 1, "", "count_protein_labels_by_reference"], [145, 4, 1, "", "count_protein_labels_by_resource"], [145, 4, 1, "", "count_proteins"], [145, 4, 1, "", "count_proteins_by_data_model"], [145, 4, 1, "", "count_proteins_by_interaction_type"], [145, 4, 1, "", "count_proteins_by_interaction_type_and_data_model"], [145, 4, 1, "", "count_proteins_by_interaction_type_and_data_model_and_resource"], [145, 4, 1, "", "count_proteins_by_reference"], [145, 4, 1, "", "count_proteins_by_resource"], [145, 4, 1, "", "count_references"], [145, 4, 1, "", "count_references_by_data_model"], [145, 4, 1, "", "count_references_by_interaction_type"], [145, 4, 1, "", "count_references_by_interaction_type_and_data_model"], [145, 4, 1, "", "count_references_by_interaction_type_and_data_model_and_resource"], [145, 4, 1, "", "count_references_by_reference"], [145, 4, 1, "", "count_references_by_resource"], [145, 4, 1, "", "count_regulated_by"], [145, 4, 1, "", "count_regulates"], [145, 4, 1, "", "count_resource_names"], [145, 4, 1, "", "count_resource_names_by_data_model"], [145, 4, 1, "", "count_resource_names_by_interaction_type"], [145, 4, 1, "", "count_resource_names_by_interaction_type_and_data_model"], [145, 4, 1, "", "count_resource_names_by_interaction_type_and_data_model_and_resource"], [145, 4, 1, "", "count_resource_names_by_reference"], [145, 4, 1, "", "count_resource_names_by_resource"], [145, 4, 1, "", "count_resource_names_via"], [145, 4, 1, "", "count_resource_names_via_by_data_model"], [145, 4, 1, "", "count_resource_names_via_by_interaction_type"], [145, 4, 1, "", "count_resource_names_via_by_interaction_type_and_data_model"], [145, 4, 1, "", "count_resource_names_via_by_interaction_type_and_data_model_and_resource"], [145, 4, 1, "", "count_resource_names_via_by_reference"], [145, 4, 1, "", "count_resource_names_via_by_resource"], [145, 4, 1, "", "count_resources"], [145, 4, 1, "", "count_resources_by_data_model"], [145, 4, 1, "", "count_resources_by_interaction_type"], [145, 4, 1, "", "count_resources_by_interaction_type_and_data_model"], [145, 4, 1, "", "count_resources_by_interaction_type_and_data_model_and_resource"], [145, 4, 1, "", "count_resources_by_reference"], [145, 4, 1, "", "count_resources_by_resource"], [145, 4, 1, "", "count_resources_via"], [145, 4, 1, "", "count_resources_via_by_data_model"], [145, 4, 1, "", "count_resources_via_by_interaction_type"], [145, 4, 1, "", "count_resources_via_by_interaction_type_and_data_model"], [145, 4, 1, "", "count_resources_via_by_interaction_type_and_data_model_and_resource"], [145, 4, 1, "", "count_resources_via_by_reference"], [145, 4, 1, "", "count_resources_via_by_resource"], [145, 4, 1, "", "count_small_molecule_identifiers"], [145, 4, 1, "", "count_small_molecule_identifiers_by_data_model"], [145, 4, 1, "", "count_small_molecule_identifiers_by_interaction_type"], [145, 4, 1, "", "count_small_molecule_identifiers_by_interaction_type_and_data_model"], [145, 4, 1, "", "count_small_molecule_identifiers_by_interaction_type_and_data_model_and_resource"], [145, 4, 1, "", "count_small_molecule_identifiers_by_reference"], [145, 4, 1, "", "count_small_molecule_identifiers_by_resource"], [145, 4, 1, "", "count_small_molecule_labels"], [145, 4, 1, "", "count_small_molecule_labels_by_data_model"], [145, 4, 1, "", "count_small_molecule_labels_by_interaction_type"], [145, 4, 1, "", "count_small_molecule_labels_by_interaction_type_and_data_model"], [145, 4, 1, "", "count_small_molecule_labels_by_interaction_type_and_data_model_and_resource"], [145, 4, 1, "", "count_small_molecule_labels_by_reference"], [145, 4, 1, "", "count_small_molecule_labels_by_resource"], [145, 4, 1, "", "count_small_molecules"], [145, 4, 1, "", "count_small_molecules_by_data_model"], [145, 4, 1, "", "count_small_molecules_by_interaction_type"], [145, 4, 1, "", "count_small_molecules_by_interaction_type_and_data_model"], [145, 4, 1, "", "count_small_molecules_by_interaction_type_and_data_model_and_resource"], [145, 4, 1, "", "count_small_molecules_by_reference"], [145, 4, 1, "", "count_small_molecules_by_resource"], [145, 4, 1, "", "count_suppressed_by"], [145, 4, 1, "", "count_suppresses"], [145, 4, 1, "", "count_transcriptionally_activated_by"], [145, 4, 1, "", "count_transcriptionally_activates"], [145, 4, 1, "", "count_transcriptionally_regulated_by"], [145, 4, 1, "", "count_transcriptionally_regulates"], [145, 4, 1, "", "count_transcriptionally_suppressed_by"], [145, 4, 1, "", "count_transcriptionally_suppresses"], [145, 4, 1, "", "curation_effort_by_data_model"], [145, 4, 1, "", "curation_effort_by_interaction_type"], [145, 4, 1, "", "curation_effort_by_interaction_type_and_data_model"], [145, 4, 1, "", "curation_effort_by_interaction_type_and_data_model_and_resource"], [145, 4, 1, "", "curation_effort_by_reference"], [145, 4, 1, "", "curation_effort_by_resource"], [145, 4, 1, "", "data_models_by_data_model"], [145, 4, 1, "", "data_models_by_interaction_type"], [145, 4, 1, "", "data_models_by_interaction_type_and_data_model"], [145, 4, 1, "", "data_models_by_interaction_type_and_data_model_and_resource"], [145, 4, 1, "", "data_models_by_reference"], [145, 4, 1, "", "data_models_by_resource"], [145, 4, 1, "", "datasets_by_data_model"], [145, 4, 1, "", "datasets_by_interaction_type"], [145, 4, 1, "", "datasets_by_interaction_type_and_data_model"], [145, 4, 1, "", "datasets_by_interaction_type_and_data_model_and_resource"], [145, 4, 1, "", "datasets_by_reference"], [145, 4, 1, "", "datasets_by_resource"], [145, 4, 1, "", "degrees_directed_by_data_model"], [145, 4, 1, "", "degrees_directed_by_interaction_type"], [145, 4, 1, "", "degrees_directed_by_interaction_type_and_data_model"], [145, 4, 1, "", "degrees_directed_by_interaction_type_and_data_model_and_resource"], [145, 4, 1, "", "degrees_directed_by_reference"], [145, 4, 1, "", "degrees_directed_by_resource"], [145, 4, 1, "", "degrees_directed_in_by_data_model"], [145, 4, 1, "", "degrees_directed_in_by_interaction_type"], [145, 4, 1, "", "degrees_directed_in_by_interaction_type_and_data_model"], [145, 4, 1, "", "degrees_directed_in_by_interaction_type_and_data_model_and_resource"], [145, 4, 1, "", "degrees_directed_in_by_reference"], [145, 4, 1, "", "degrees_directed_in_by_resource"], [145, 4, 1, "", "degrees_directed_out_by_data_model"], [145, 4, 1, "", "degrees_directed_out_by_interaction_type"], [145, 4, 1, "", "degrees_directed_out_by_interaction_type_and_data_model"], [145, 4, 1, "", "degrees_directed_out_by_interaction_type_and_data_model_and_resource"], [145, 4, 1, "", "degrees_directed_out_by_reference"], [145, 4, 1, "", "degrees_directed_out_by_resource"], [145, 4, 1, "", "degrees_negative_by_data_model"], [145, 4, 1, "", "degrees_negative_by_interaction_type"], [145, 4, 1, "", "degrees_negative_by_interaction_type_and_data_model"], [145, 4, 1, "", "degrees_negative_by_interaction_type_and_data_model_and_resource"], [145, 4, 1, "", "degrees_negative_by_reference"], [145, 4, 1, "", "degrees_negative_by_resource"], [145, 4, 1, "", "degrees_negative_in_by_data_model"], [145, 4, 1, "", "degrees_negative_in_by_interaction_type"], [145, 4, 1, "", "degrees_negative_in_by_interaction_type_and_data_model"], [145, 4, 1, "", "degrees_negative_in_by_interaction_type_and_data_model_and_resource"], [145, 4, 1, "", "degrees_negative_in_by_reference"], [145, 4, 1, "", "degrees_negative_in_by_resource"], [145, 4, 1, "", "degrees_negative_out_by_data_model"], [145, 4, 1, "", "degrees_negative_out_by_interaction_type"], [145, 4, 1, "", "degrees_negative_out_by_interaction_type_and_data_model"], [145, 4, 1, "", "degrees_negative_out_by_interaction_type_and_data_model_and_resource"], [145, 4, 1, "", "degrees_negative_out_by_reference"], [145, 4, 1, "", "degrees_negative_out_by_resource"], [145, 4, 1, "", "degrees_non_directed_by_data_model"], [145, 4, 1, "", "degrees_non_directed_by_interaction_type"], [145, 4, 1, "", "degrees_non_directed_by_interaction_type_and_data_model"], [145, 4, 1, "", "degrees_non_directed_by_interaction_type_and_data_model_and_resource"], [145, 4, 1, "", "degrees_non_directed_by_reference"], [145, 4, 1, "", "degrees_non_directed_by_resource"], [145, 4, 1, "", "degrees_positive_by_data_model"], [145, 4, 1, "", "degrees_positive_by_interaction_type"], [145, 4, 1, "", "degrees_positive_by_interaction_type_and_data_model"], [145, 4, 1, "", "degrees_positive_by_interaction_type_and_data_model_and_resource"], [145, 4, 1, "", "degrees_positive_by_reference"], [145, 4, 1, "", "degrees_positive_by_resource"], [145, 4, 1, "", "degrees_positive_in_by_data_model"], [145, 4, 1, "", "degrees_positive_in_by_interaction_type"], [145, 4, 1, "", "degrees_positive_in_by_interaction_type_and_data_model"], [145, 4, 1, "", "degrees_positive_in_by_interaction_type_and_data_model_and_resource"], [145, 4, 1, "", "degrees_positive_in_by_reference"], [145, 4, 1, "", "degrees_positive_in_by_resource"], [145, 4, 1, "", "degrees_positive_out_by_data_model"], [145, 4, 1, "", "degrees_positive_out_by_interaction_type"], [145, 4, 1, "", "degrees_positive_out_by_interaction_type_and_data_model"], [145, 4, 1, "", "degrees_positive_out_by_interaction_type_and_data_model_and_resource"], [145, 4, 1, "", "degrees_positive_out_by_reference"], [145, 4, 1, "", "degrees_positive_out_by_resource"], [145, 4, 1, "", "degrees_signed_by_data_model"], [145, 4, 1, "", "degrees_signed_by_interaction_type"], [145, 4, 1, "", "degrees_signed_by_interaction_type_and_data_model"], [145, 4, 1, "", "degrees_signed_by_interaction_type_and_data_model_and_resource"], [145, 4, 1, "", "degrees_signed_by_reference"], [145, 4, 1, "", "degrees_signed_by_resource"], [145, 4, 1, "", "degrees_signed_in_by_data_model"], [145, 4, 1, "", "degrees_signed_in_by_interaction_type"], [145, 4, 1, "", "degrees_signed_in_by_interaction_type_and_data_model"], [145, 4, 1, "", "degrees_signed_in_by_interaction_type_and_data_model_and_resource"], [145, 4, 1, "", "degrees_signed_in_by_reference"], [145, 4, 1, "", "degrees_signed_in_by_resource"], [145, 4, 1, "", "degrees_signed_out_by_data_model"], [145, 4, 1, "", "degrees_signed_out_by_interaction_type"], [145, 4, 1, "", "degrees_signed_out_by_interaction_type_and_data_model"], [145, 4, 1, "", "degrees_signed_out_by_interaction_type_and_data_model_and_resource"], [145, 4, 1, "", "degrees_signed_out_by_reference"], [145, 4, 1, "", "degrees_signed_out_by_resource"], [145, 4, 1, "", "degrees_undirected_by_data_model"], [145, 4, 1, "", "degrees_undirected_by_interaction_type"], [145, 4, 1, "", "degrees_undirected_by_interaction_type_and_data_model"], [145, 4, 1, "", "degrees_undirected_by_interaction_type_and_data_model_and_resource"], [145, 4, 1, "", "degrees_undirected_by_reference"], [145, 4, 1, "", "degrees_undirected_by_resource"], [145, 2, 1, "", "direction_consistency"], [145, 2, 1, "", "dorothea"], [145, 4, 1, "", "entities_by_data_model"], [145, 4, 1, "", "entities_by_interaction_type"], [145, 4, 1, "", "entities_by_interaction_type_and_data_model"], [145, 4, 1, "", "entities_by_interaction_type_and_data_model_and_resource"], [145, 4, 1, "", "entities_by_reference"], [145, 4, 1, "", "entities_by_resource"], [145, 2, 1, "", "entity_by_id"], [145, 2, 1, "", "entity_by_label"], [145, 4, 1, "", "evidences_by_data_model"], [145, 4, 1, "", "evidences_by_interaction_type"], [145, 4, 1, "", "evidences_by_interaction_type_and_data_model"], [145, 4, 1, "", "evidences_by_interaction_type_and_data_model_and_resource"], [145, 4, 1, "", "evidences_by_reference"], [145, 4, 1, "", "evidences_by_resource"], [145, 2, 1, "", "extra_directions"], [145, 2, 1, "", "find_paths"], [145, 2, 1, "", "from_igraph"], [145, 2, 1, "", "from_pickle"], [145, 4, 1, "", "get_complex_identifiers"], [145, 4, 1, "", "get_complex_labels"], [145, 4, 1, "", "get_complexes"], [145, 4, 1, "", "get_curation_effort"], [145, 4, 1, "", "get_data_models"], [145, 4, 1, "", "get_datasets"], [145, 4, 1, "", "get_degrees_directed"], [145, 4, 1, "", "get_degrees_directed_in"], [145, 4, 1, "", "get_degrees_directed_out"], [145, 4, 1, "", "get_degrees_negative"], [145, 4, 1, "", "get_degrees_negative_in"], [145, 4, 1, "", "get_degrees_negative_out"], [145, 4, 1, "", "get_degrees_non_directed"], [145, 4, 1, "", "get_degrees_positive"], [145, 4, 1, "", "get_degrees_positive_in"], [145, 4, 1, "", "get_degrees_positive_out"], [145, 4, 1, "", "get_degrees_signed"], [145, 4, 1, "", "get_degrees_signed_in"], [145, 4, 1, "", "get_degrees_signed_out"], [145, 4, 1, "", "get_degrees_undirected"], [145, 4, 1, "", "get_entities"], [145, 4, 1, "", "get_evidences"], [145, 4, 1, "", "get_identifiers"], [145, 4, 1, "", "get_interaction_types"], [145, 4, 1, "", "get_interactions"], [145, 4, 1, "", "get_interactions_0"], [145, 4, 1, "", "get_interactions_directed"], [145, 4, 1, "", "get_interactions_mutual"], [145, 4, 1, "", "get_interactions_negative"], [145, 4, 1, "", "get_interactions_non_directed"], [145, 4, 1, "", "get_interactions_non_directed_0"], [145, 4, 1, "", "get_interactions_positive"], [145, 4, 1, "", "get_interactions_signed"], [145, 4, 1, "", "get_interactions_undirected"], [145, 4, 1, "", "get_interactions_undirected_0"], [145, 4, 1, "", "get_labels"], [145, 4, 1, "", "get_lncrna_identifiers"], [145, 4, 1, "", "get_lncrna_labels"], [145, 4, 1, "", "get_lncrnas"], [145, 4, 1, "", "get_mirna_identifiers"], [145, 4, 1, "", "get_mirna_labels"], [145, 4, 1, "", "get_mirnas"], [145, 2, 1, "", "get_organisms"], [145, 4, 1, "", "get_protein_identifiers"], [145, 4, 1, "", "get_protein_labels"], [145, 4, 1, "", "get_proteins"], [145, 4, 1, "", "get_references"], [145, 4, 1, "", "get_resource_names"], [145, 4, 1, "", "get_resource_names_via"], [145, 4, 1, "", "get_resources"], [145, 4, 1, "", "get_resources_via"], [145, 4, 1, "", "get_small_molecule_identifiers"], [145, 4, 1, "", "get_small_molecule_labels"], [145, 4, 1, "", "get_small_molecules"], [145, 2, 1, "", "htp_interactions"], [145, 2, 1, "", "htp_references"], [145, 4, 1, "", "identifiers_by_data_model"], [145, 4, 1, "", "identifiers_by_interaction_type"], [145, 4, 1, "", "identifiers_by_interaction_type_and_data_model"], [145, 4, 1, "", "identifiers_by_interaction_type_and_data_model_and_resource"], [145, 4, 1, "", "identifiers_by_reference"], [145, 4, 1, "", "identifiers_by_resource"], [145, 2, 1, "", "init_network"], [145, 2, 1, "", "interaction"], [145, 2, 1, "", "interaction_by_id"], [145, 2, 1, "", "interaction_by_label"], [145, 4, 1, "", "interaction_types_by_data_model"], [145, 4, 1, "", "interaction_types_by_interaction_type"], [145, 4, 1, "", "interaction_types_by_interaction_type_and_data_model"], [145, 4, 1, "", "interaction_types_by_interaction_type_and_data_model_and_resource"], [145, 4, 1, "", "interaction_types_by_reference"], [145, 4, 1, "", "interaction_types_by_resource"], [145, 4, 1, "", "interactions_0_by_data_model"], [145, 4, 1, "", "interactions_0_by_interaction_type"], [145, 4, 1, "", "interactions_0_by_interaction_type_and_data_model"], [145, 4, 1, "", "interactions_0_by_interaction_type_and_data_model_and_resource"], [145, 4, 1, "", "interactions_0_by_reference"], [145, 4, 1, "", "interactions_0_by_resource"], [145, 4, 1, "", "interactions_by_data_model"], [145, 4, 1, "", "interactions_by_interaction_type"], [145, 4, 1, "", "interactions_by_interaction_type_and_data_model"], [145, 4, 1, "", "interactions_by_interaction_type_and_data_model_and_resource"], [145, 4, 1, "", "interactions_by_reference"], [145, 4, 1, "", "interactions_by_resource"], [145, 4, 1, "", "interactions_directed_by_data_model"], [145, 4, 1, "", "interactions_directed_by_interaction_type"], [145, 4, 1, "", "interactions_directed_by_interaction_type_and_data_model"], [145, 4, 1, "", "interactions_directed_by_interaction_type_and_data_model_and_resource"], [145, 4, 1, "", "interactions_directed_by_reference"], [145, 4, 1, "", "interactions_directed_by_resource"], [145, 4, 1, "", "interactions_mutual_by_data_model"], [145, 4, 1, "", "interactions_mutual_by_interaction_type"], [145, 4, 1, "", "interactions_mutual_by_interaction_type_and_data_model"], [145, 4, 1, "", "interactions_mutual_by_interaction_type_and_data_model_and_resource"], [145, 4, 1, "", "interactions_mutual_by_reference"], [145, 4, 1, "", "interactions_mutual_by_resource"], [145, 4, 1, "", "interactions_negative_by_data_model"], [145, 4, 1, "", "interactions_negative_by_interaction_type"], [145, 4, 1, "", "interactions_negative_by_interaction_type_and_data_model"], [145, 4, 1, "", "interactions_negative_by_interaction_type_and_data_model_and_resource"], [145, 4, 1, "", "interactions_negative_by_reference"], [145, 4, 1, "", "interactions_negative_by_resource"], [145, 4, 1, "", "interactions_non_directed_0_by_data_model"], [145, 4, 1, "", "interactions_non_directed_0_by_interaction_type"], [145, 4, 1, "", "interactions_non_directed_0_by_interaction_type_and_data_model"], [145, 4, 1, "", "interactions_non_directed_0_by_interaction_type_and_data_model_and_resource"], [145, 4, 1, "", "interactions_non_directed_0_by_reference"], [145, 4, 1, "", "interactions_non_directed_0_by_resource"], [145, 4, 1, "", "interactions_non_directed_by_data_model"], [145, 4, 1, "", "interactions_non_directed_by_interaction_type"], [145, 4, 1, "", "interactions_non_directed_by_interaction_type_and_data_model"], [145, 4, 1, "", "interactions_non_directed_by_interaction_type_and_data_model_and_resource"], [145, 4, 1, "", "interactions_non_directed_by_reference"], [145, 4, 1, "", "interactions_non_directed_by_resource"], [145, 4, 1, "", "interactions_positive_by_data_model"], [145, 4, 1, "", "interactions_positive_by_interaction_type"], [145, 4, 1, "", "interactions_positive_by_interaction_type_and_data_model"], [145, 4, 1, "", "interactions_positive_by_interaction_type_and_data_model_and_resource"], [145, 4, 1, "", "interactions_positive_by_reference"], [145, 4, 1, "", "interactions_positive_by_resource"], [145, 4, 1, "", "interactions_signed_by_data_model"], [145, 4, 1, "", "interactions_signed_by_interaction_type"], [145, 4, 1, "", "interactions_signed_by_interaction_type_and_data_model"], [145, 4, 1, "", "interactions_signed_by_interaction_type_and_data_model_and_resource"], [145, 4, 1, "", "interactions_signed_by_reference"], [145, 4, 1, "", "interactions_signed_by_resource"], [145, 4, 1, "", "interactions_undirected_0_by_data_model"], [145, 4, 1, "", "interactions_undirected_0_by_interaction_type"], [145, 4, 1, "", "interactions_undirected_0_by_interaction_type_and_data_model"], [145, 4, 1, "", "interactions_undirected_0_by_interaction_type_and_data_model_and_resource"], [145, 4, 1, "", "interactions_undirected_0_by_reference"], [145, 4, 1, "", "interactions_undirected_0_by_resource"], [145, 4, 1, "", "interactions_undirected_by_data_model"], [145, 4, 1, "", "interactions_undirected_by_interaction_type"], [145, 4, 1, "", "interactions_undirected_by_interaction_type_and_data_model"], [145, 4, 1, "", "interactions_undirected_by_interaction_type_and_data_model_and_resource"], [145, 4, 1, "", "interactions_undirected_by_reference"], [145, 4, 1, "", "interactions_undirected_by_resource"], [145, 4, 1, "", "labels_by_data_model"], [145, 4, 1, "", "labels_by_interaction_type"], [145, 4, 1, "", "labels_by_interaction_type_and_data_model"], [145, 4, 1, "", "labels_by_interaction_type_and_data_model_and_resource"], [145, 4, 1, "", "labels_by_reference"], [145, 4, 1, "", "labels_by_resource"], [145, 4, 1, "", "lncrna_identifiers_by_data_model"], [145, 4, 1, "", "lncrna_identifiers_by_interaction_type"], [145, 4, 1, "", "lncrna_identifiers_by_interaction_type_and_data_model"], [145, 4, 1, "", "lncrna_identifiers_by_interaction_type_and_data_model_and_resource"], [145, 4, 1, "", "lncrna_identifiers_by_reference"], [145, 4, 1, "", "lncrna_identifiers_by_resource"], [145, 4, 1, "", "lncrna_labels_by_data_model"], [145, 4, 1, "", "lncrna_labels_by_interaction_type"], [145, 4, 1, "", "lncrna_labels_by_interaction_type_and_data_model"], [145, 4, 1, "", "lncrna_labels_by_interaction_type_and_data_model_and_resource"], [145, 4, 1, "", "lncrna_labels_by_reference"], [145, 4, 1, "", "lncrna_labels_by_resource"], [145, 4, 1, "", "lncrnas_by_data_model"], [145, 4, 1, "", "lncrnas_by_interaction_type"], [145, 4, 1, "", "lncrnas_by_interaction_type_and_data_model"], [145, 4, 1, "", "lncrnas_by_interaction_type_and_data_model_and_resource"], [145, 4, 1, "", "lncrnas_by_reference"], [145, 4, 1, "", "lncrnas_by_resource"], [145, 2, 1, "", "load"], [145, 2, 1, "", "load_from_pickle"], [145, 2, 1, "", "load_resource"], [145, 2, 1, "", "load_resources"], [145, 2, 1, "", "make_df"], [145, 4, 1, "", "mirna_identifiers_by_data_model"], [145, 4, 1, "", "mirna_identifiers_by_interaction_type"], [145, 4, 1, "", "mirna_identifiers_by_interaction_type_and_data_model"], [145, 4, 1, "", "mirna_identifiers_by_interaction_type_and_data_model_and_resource"], [145, 4, 1, "", "mirna_identifiers_by_reference"], [145, 4, 1, "", "mirna_identifiers_by_resource"], [145, 4, 1, "", "mirna_labels_by_data_model"], [145, 4, 1, "", "mirna_labels_by_interaction_type"], [145, 4, 1, "", "mirna_labels_by_interaction_type_and_data_model"], [145, 4, 1, "", "mirna_labels_by_interaction_type_and_data_model_and_resource"], [145, 4, 1, "", "mirna_labels_by_reference"], [145, 4, 1, "", "mirna_labels_by_resource"], [145, 2, 1, "", "mirna_target"], [145, 4, 1, "", "mirnas_by_data_model"], [145, 4, 1, "", "mirnas_by_interaction_type"], [145, 4, 1, "", "mirnas_by_interaction_type_and_data_model"], [145, 4, 1, "", "mirnas_by_interaction_type_and_data_model_and_resource"], [145, 4, 1, "", "mirnas_by_reference"], [145, 4, 1, "", "mirnas_by_resource"], [145, 2, 1, "", "numof_interactions_per_reference"], [145, 2, 1, "", "organisms_check"], [145, 2, 1, "", "partners"], [145, 4, 1, "", "post_transcriptionally_activated_by"], [145, 4, 1, "", "post_transcriptionally_activates"], [145, 4, 1, "", "post_transcriptionally_regulated_by"], [145, 4, 1, "", "post_transcriptionally_regulates"], [145, 4, 1, "", "post_transcriptionally_suppressed_by"], [145, 4, 1, "", "post_transcriptionally_suppresses"], [145, 4, 1, "", "post_translationally_activated_by"], [145, 4, 1, "", "post_translationally_activates"], [145, 4, 1, "", "post_translationally_regulated_by"], [145, 4, 1, "", "post_translationally_regulates"], [145, 4, 1, "", "post_translationally_suppressed_by"], [145, 4, 1, "", "post_translationally_suppresses"], [145, 4, 1, "", "protein_identifiers_by_data_model"], [145, 4, 1, "", "protein_identifiers_by_interaction_type"], [145, 4, 1, "", "protein_identifiers_by_interaction_type_and_data_model"], [145, 4, 1, "", "protein_identifiers_by_interaction_type_and_data_model_and_resource"], [145, 4, 1, "", "protein_identifiers_by_reference"], [145, 4, 1, "", "protein_identifiers_by_resource"], [145, 4, 1, "", "protein_labels_by_data_model"], [145, 4, 1, "", "protein_labels_by_interaction_type"], [145, 4, 1, "", "protein_labels_by_interaction_type_and_data_model"], [145, 4, 1, "", "protein_labels_by_interaction_type_and_data_model_and_resource"], [145, 4, 1, "", "protein_labels_by_reference"], [145, 4, 1, "", "protein_labels_by_resource"], [145, 4, 1, "", "proteins_by_data_model"], [145, 4, 1, "", "proteins_by_interaction_type"], [145, 4, 1, "", "proteins_by_interaction_type_and_data_model"], [145, 4, 1, "", "proteins_by_interaction_type_and_data_model_and_resource"], [145, 4, 1, "", "proteins_by_reference"], [145, 4, 1, "", "proteins_by_resource"], [145, 2, 1, "", "random_interaction"], [145, 4, 1, "", "references_by_data_model"], [145, 4, 1, "", "references_by_interaction_type"], [145, 4, 1, "", "references_by_interaction_type_and_data_model"], [145, 4, 1, "", "references_by_interaction_type_and_data_model_and_resource"], [145, 4, 1, "", "references_by_reference"], [145, 4, 1, "", "references_by_resource"], [145, 4, 1, "", "regulated_by"], [145, 4, 1, "", "regulates"], [145, 2, 1, "", "reload"], [145, 2, 1, "", "remove_interaction"], [145, 2, 1, "", "remove_loops"], [145, 2, 1, "", "remove_node"], [145, 2, 1, "", "remove_zero_degree"], [145, 2, 1, "", "reset"], [145, 5, 1, "", "resource_names"], [145, 4, 1, "", "resource_names_by_data_model"], [145, 4, 1, "", "resource_names_by_interaction_type"], [145, 4, 1, "", "resource_names_by_interaction_type_and_data_model"], [145, 4, 1, "", "resource_names_by_interaction_type_and_data_model_and_resource"], [145, 4, 1, "", "resource_names_by_reference"], [145, 4, 1, "", "resource_names_by_resource"], [145, 4, 1, "", "resource_names_via_by_data_model"], [145, 4, 1, "", "resource_names_via_by_interaction_type"], [145, 4, 1, "", "resource_names_via_by_interaction_type_and_data_model"], [145, 4, 1, "", "resource_names_via_by_interaction_type_and_data_model_and_resource"], [145, 4, 1, "", "resource_names_via_by_reference"], [145, 4, 1, "", "resource_names_via_by_resource"], [145, 5, 1, "", "resources"], [145, 4, 1, "", "resources_by_data_model"], [145, 4, 1, "", "resources_by_interaction_type"], [145, 4, 1, "", "resources_by_interaction_type_and_data_model"], [145, 4, 1, "", "resources_by_interaction_type_and_data_model_and_resource"], [145, 4, 1, "", "resources_by_reference"], [145, 4, 1, "", "resources_by_resource"], [145, 4, 1, "", "resources_via_by_data_model"], [145, 4, 1, "", "resources_via_by_interaction_type"], [145, 4, 1, "", "resources_via_by_interaction_type_and_data_model"], [145, 4, 1, "", "resources_via_by_interaction_type_and_data_model_and_resource"], [145, 4, 1, "", "resources_via_by_reference"], [145, 4, 1, "", "resources_via_by_resource"], [145, 2, 1, "", "save_to_pickle"], [145, 4, 1, "", "small_molecule_identifiers_by_data_model"], [145, 4, 1, "", "small_molecule_identifiers_by_interaction_type"], [145, 4, 1, "", "small_molecule_identifiers_by_interaction_type_and_data_model"], [145, 4, 1, "", "small_molecule_identifiers_by_interaction_type_and_data_model_and_resource"], [145, 4, 1, "", "small_molecule_identifiers_by_reference"], [145, 4, 1, "", "small_molecule_identifiers_by_resource"], [145, 4, 1, "", "small_molecule_labels_by_data_model"], [145, 4, 1, "", "small_molecule_labels_by_interaction_type"], [145, 4, 1, "", "small_molecule_labels_by_interaction_type_and_data_model"], [145, 4, 1, "", "small_molecule_labels_by_interaction_type_and_data_model_and_resource"], [145, 4, 1, "", "small_molecule_labels_by_reference"], [145, 4, 1, "", "small_molecule_labels_by_resource"], [145, 4, 1, "", "small_molecules_by_data_model"], [145, 4, 1, "", "small_molecules_by_interaction_type"], [145, 4, 1, "", "small_molecules_by_interaction_type_and_data_model"], [145, 4, 1, "", "small_molecules_by_interaction_type_and_data_model_and_resource"], [145, 4, 1, "", "small_molecules_by_reference"], [145, 4, 1, "", "small_molecules_by_resource"], [145, 2, 1, "", "summaries_tab"], [145, 4, 1, "", "suppressed_by"], [145, 4, 1, "", "suppresses"], [145, 2, 1, "", "to_igraph"], [145, 2, 1, "", "transcription"], [145, 4, 1, "", "transcriptionally_activated_by"], [145, 4, 1, "", "transcriptionally_activates"], [145, 4, 1, "", "transcriptionally_regulated_by"], [145, 4, 1, "", "transcriptionally_regulates"], [145, 4, 1, "", "transcriptionally_suppressed_by"], [145, 4, 1, "", "transcriptionally_suppresses"]], "pypath.core.network.NetworkEntityCollection": [[146, 2, 1, "", "__init__"]], "pypath.core.network.NetworkStatsRecord": [[147, 2, 1, "", "__init__"], [147, 4, 1, "", "by_category"], [147, 4, 1, "", "by_resource"], [147, 4, 1, "", "cat_resource"], [147, 2, 1, "", "count"], [147, 2, 1, "", "index"], [147, 4, 1, "", "label"], [147, 4, 1, "", "method"], [147, 4, 1, "", "percent"], [147, 4, 1, "", "percent_cat"], [147, 4, 1, "", "percent_res_cat"], [147, 4, 1, "", "resource_cat"], [147, 4, 1, "", "shared"], [147, 4, 1, "", "shared_cat"], [147, 4, 1, "", "shared_res_cat"], [147, 4, 1, "", "total"], [147, 4, 1, "", "unique"], [147, 4, 1, "", "unique_cat"], [147, 4, 1, "", "unique_res_cat"]], "pypath.inputs": [[154, 0, 0, "-", "abs"], [156, 0, 0, "-", "acsn"], [159, 0, 0, "-", "adhesome"], [162, 0, 0, "-", "adrecs"], [172, 0, 0, "-", "almen2009"], [174, 0, 0, "-", "baccin2019"], [177, 0, 0, "-", "biogps"], [183, 0, 0, "-", "biogrid"], [186, 0, 0, "-", "biomart"], [192, 0, 0, "-", "biomodels"], [198, 0, 0, "-", "ca1"], [200, 0, 0, "-", "cancercellmap"], [202, 0, 0, "-", "cancerdrugsdb"], [206, 0, 0, "-", "cancersea"], [208, 0, 0, "-", "cell"], [210, 0, 0, "-", "cellcall"], [215, 0, 0, "-", "cellcellinteractions"], [217, 0, 0, "-", "cellchatdb"], [223, 0, 0, "-", "cellinker"], [235, 0, 0, "-", "cellphonedb"], [242, 0, 0, "-", "celltalkdb"], [246, 0, 0, "-", "celltypist"], [248, 0, 0, "-", "chembl"], [256, 0, 0, "-", "clinvar"], [259, 0, 0, "-", "collectri"], [262, 0, 0, "-", "common"], [269, 0, 0, "-", "compath"], [271, 0, 0, "-", "compleat"], [274, 0, 0, "-", "complexportal"], [276, 0, 0, "-", "comppi"], [279, 0, 0, "-", "connectomedb"], [282, 0, 0, "-", "corum"], [284, 0, 0, "-", "cosmic"], [286, 0, 0, "-", "cpad"], [290, 0, 0, "-", "cpdb"], [293, 0, 0, "-", "credentials"], [295, 0, 0, "-", "csa"], [297, 0, 0, "-", "cspa"], [301, 0, 0, "-", "ctdbase"], [304, 0, 0, "-", "cytosig"], [307, 0, 0, "-", "dbptm"], [311, 0, 0, "-", "ddinter"], [317, 0, 0, "-", "deathdomain"], [320, 0, 0, "-", "depod"], [323, 0, 0, "-", "dgidb"], [327, 0, 0, "-", "dip"], [330, 0, 0, "-", "diseases"], [338, 0, 0, "-", "domino"], [343, 0, 0, "-", "dorothea"], [354, 0, 0, "-", "drugbank"], [361, 0, 0, "-", "drugcentral"], [365, 0, 0, "-", "ebi"], [367, 0, 0, "-", "elm"], [372, 0, 0, "-", "embopress"], [374, 0, 0, "-", "embrace"], [379, 0, 0, "-", "encode"], [381, 0, 0, "-", "ensembl"], [383, 0, 0, "-", "eutils"], [385, 0, 0, "-", "exocarta"], [388, 0, 0, "-", "expasy"], [391, 0, 0, "-", "genecards"], [395, 3, 1, "", "get_method"], [396, 0, 0, "-", "go"], [418, 0, 0, "-", "gpcrdb"], [420, 0, 0, "-", "graphviz"], [422, 0, 0, "-", "guide2pharma"], [426, 0, 0, "-", "gutmgene"], [431, 0, 0, "-", "havugimana"], [434, 0, 0, "-", "hgnc"], [436, 0, 0, "-", "hippie"], [438, 0, 0, "-", "hmdb"], [466, 0, 0, "-", "homologene"], [470, 0, 0, "-", "hpmr"], [476, 0, 0, "-", "hpo"], [481, 0, 0, "-", "hprd"], [486, 0, 0, "-", "htri"], [488, 0, 0, "-", "humancellmap"], [490, 0, 0, "-", "humap"], [493, 0, 0, "-", "humsavar"], [495, 0, 0, "-", "huri"], [508, 0, 0, "-", "i3d"], [510, 0, 0, "-", "icellnet"], [515, 0, 0, "-", "ielm"], [518, 0, 0, "-", "imweb"], [521, 0, 0, "-", "innatedb"], [523, 0, 0, "-", "instruct"], [526, 0, 0, "-", "intact"], [528, 0, 0, "-", "integrins"], [530, 0, 0, "-", "interpro"], [535, 0, 0, "-", "intogen"], [537, 0, 0, "-", "ipi"], [539, 0, 0, "-", "iptmnet"], [542, 0, 0, "-", "italk"], [546, 0, 0, "-", "kea"], [549, 0, 0, "-", "kegg"], [559, 0, 0, "-", "kegg_api"], [576, 0, 0, "-", "kinasedotcom"], [578, 0, 0, "-", "kirouac2010"], [580, 0, 0, "-", "lambert2018"], [583, 0, 0, "-", "laudanna"], [586, 0, 0, "-", "li2012"], [591, 0, 0, "-", "lincs"], [593, 0, 0, "-", "lmpid"], [597, 0, 0, "-", "lncdisease"], [599, 0, 0, "-", "lncrnadb"], [601, 0, 0, "-", "locate"], [603, 0, 0, "-", "lrdb"], [607, 0, 0, "-", "macrophage"], [609, 0, 0, "-", "main"], [610, 0, 0, "-", "matrisome"], [612, 0, 0, "-", "matrixdb"], [618, 0, 0, "-", "mcam"], [620, 0, 0, "-", "membranome"], [622, 0, 0, "-", "mimp"], [626, 0, 0, "-", "mir2disease"], [628, 0, 0, "-", "mirbase"], [636, 0, 0, "-", "mirdeathdb"], [638, 0, 0, "-", "mirecords"], [640, 0, 0, "-", "mirtarbase"], [642, 0, 0, "-", "mitab"], [645, 0, 0, "-", "mppi"], [647, 0, 0, "-", "msigdb"], [651, 0, 0, "-", "ncrdeathdb"], [653, 0, 0, "-", "negatome"], [655, 0, 0, "-", "netbiol"], [658, 0, 0, "-", "netpath"], [662, 0, 0, "-", "offsides"], [664, 0, 0, "-", "oma"], [667, 0, 0, "-", "ontology"], [670, 0, 0, "-", "opentargets"], [676, 0, 0, "-", "opm"], [678, 0, 0, "-", "oreganno"], [681, 0, 0, "-", "panglaodb"], [684, 0, 0, "-", "pathophenodb"], [687, 0, 0, "-", "pathwaycommons"], [704, 0, 0, "-", "pazar"], [706, 0, 0, "-", "pdb"], [710, 0, 0, "-", "pdzbase"], [712, 0, 0, "-", "pepcyber"], [715, 0, 0, "-", "pfam"], [720, 0, 0, "-", "pharos"], [729, 0, 0, "-", "phobius"], [731, 0, 0, "-", "phosphatome"], [733, 0, 0, "-", "phosphoelm"], [737, 0, 0, "-", "phosphonetworks"], [740, 0, 0, "-", "phosphopoint"], [743, 0, 0, "-", "phosphosite"], [756, 0, 0, "-", "pisa"], [760, 0, 0, "-", "pro"], [763, 0, 0, "-", "progeny"], [766, 0, 0, "-", "proteinatlas"], [771, 0, 0, "-", "proteins"], [773, 0, 0, "-", "protmapper"], [777, 0, 0, "-", "pubchem"], [779, 0, 0, "-", "pubmed"], [786, 0, 0, "-", "ramilowski2015"], [789, 0, 0, "-", "ramp"], [796, 0, 0, "-", "rdata"], [797, 0, 0, "-", "reaction"], [817, 0, 0, "-", "reactome"], [822, 0, 0, "-", "scconnect"], [826, 0, 0, "-", "science"], [828, 0, 0, "-", "sider"], [837, 0, 0, "-", "signalink"], [842, 0, 0, "-", "signor"], [849, 0, 0, "-", "spike"], [852, 0, 0, "-", "stitch"], [855, 0, 0, "-", "string"], [860, 0, 0, "-", "surfaceome"], [862, 0, 0, "-", "switches_elm"], [864, 0, 0, "-", "talklr"], [868, 0, 0, "-", "tcdb"], [872, 0, 0, "-", "tfcensus"], [874, 0, 0, "-", "threedcomplex"], [880, 0, 0, "-", "threedid"], [885, 0, 0, "-", "topdb"], [887, 0, 0, "-", "transmir"], [889, 0, 0, "-", "trip"], [896, 0, 0, "-", "trrust"], [900, 0, 0, "-", "twosides"], [902, 0, 0, "-", "unichem"], [907, 0, 0, "-", "uniprot"], [934, 0, 0, "-", "uniprot_db"], [943, 0, 0, "-", "wang"], [948, 0, 0, "-", "wojtowicz2020"], [951, 0, 0, "-", "zhong2015"]], "pypath.inputs.abs": [[155, 3, 1, "", "abs_interactions"]], "pypath.inputs.acsn": [[157, 3, 1, "", "acsn_interactions"], [158, 3, 1, "", "acsn_interactions_sif"]], "pypath.inputs.adhesome": [[160, 3, 1, "", "adhesome_annotations"], [161, 3, 1, "", "adhesome_interactions"]], "pypath.inputs.adrecs": [[163, 1, 1, "", "AdrecsAdr"], [164, 1, 1, "", "AdrecsChildParent"], [165, 1, 1, "", "AdrecsDrug"], [166, 1, 1, "", "AdrecsDrugAdr"], [167, 1, 1, "", "AdrecsTerm"], [168, 3, 1, "", "adrecs_adr_ontology"], [169, 3, 1, "", "adrecs_drug_adr"], [170, 3, 1, "", "adrecs_drug_identifiers"], [171, 3, 1, "", "adrecs_hierarchy"]], "pypath.inputs.adrecs.AdrecsAdr": [[163, 2, 1, "", "__init__"], [163, 4, 1, "", "adr_class"], [163, 4, 1, "", "badd"], [163, 2, 1, "", "count"], [163, 2, 1, "", "index"]], "pypath.inputs.adrecs.AdrecsChildParent": [[164, 2, 1, "", "__init__"], [164, 4, 1, "", "child"], [164, 2, 1, "", "count"], [164, 2, 1, "", "index"], [164, 4, 1, "", "parent"]], "pypath.inputs.adrecs.AdrecsDrug": [[165, 2, 1, "", "__init__"], [165, 4, 1, "", "badd"], [165, 2, 1, "", "count"], [165, 4, 1, "", "drug"], [165, 4, 1, "", "drugbank"], [165, 2, 1, "", "index"], [165, 4, 1, "", "kegg"], [165, 4, 1, "", "mesh"], [165, 4, 1, "", "pubchem_cid"], [165, 4, 1, "", "synonyms"], [165, 4, 1, "", "tdd"]], "pypath.inputs.adrecs.AdrecsDrugAdr": [[166, 2, 1, "", "__init__"], [166, 4, 1, "", "adr"], [166, 4, 1, "", "adr_badd"], [166, 2, 1, "", "count"], [166, 4, 1, "", "drug"], [166, 4, 1, "", "drug_badd"], [166, 2, 1, "", "index"]], "pypath.inputs.adrecs.AdrecsTerm": [[167, 2, 1, "", "__init__"], [167, 4, 1, "", "adrecs_class"], [167, 4, 1, "", "badd"], [167, 2, 1, "", "count"], [167, 2, 1, "", "index"], [167, 4, 1, "", "meddra"], [167, 4, 1, "", "name"], [167, 4, 1, "", "synonyms"]], "pypath.inputs.almen2009": [[173, 3, 1, "", "almen2009_annotations"]], "pypath.inputs.baccin2019": [[175, 3, 1, "", "baccin2019_annotations"], [176, 3, 1, "", "baccin2019_interactions"]], "pypath.inputs.biogps": [[178, 1, 1, "", "BiogpsDataset"], [179, 3, 1, "", "biogps_annotations"], [180, 3, 1, "", "biogps_datasets"], [181, 3, 1, "", "biogps_download"], [182, 3, 1, "", "biogps_download_all"]], "pypath.inputs.biogps.BiogpsDataset": [[178, 2, 1, "", "__init__"], [178, 2, 1, "", "count"], [178, 2, 1, "", "index"], [178, 4, 1, "", "label"], [178, 4, 1, "", "organism"], [178, 4, 1, "", "url"]], "pypath.inputs.biogrid": [[184, 3, 1, "", "biogrid_all_interactions"], [185, 3, 1, "", "biogrid_interactions"]], "pypath.inputs.biomart": [[187, 3, 1, "", "biomart_homology"], [188, 3, 1, "", "biomart_microarray"], [189, 3, 1, "", "biomart_microarray_types"], [190, 3, 1, "", "biomart_microarrays"], [191, 3, 1, "", "biomart_query"]], "pypath.inputs.biomodels": [[193, 3, 1, "", "download_single_model"], [194, 3, 1, "", "get_all_models"], [195, 3, 1, "", "get_biomodels"], [196, 3, 1, "", "get_biomodels_req"], [197, 3, 1, "", "get_single_model"]], "pypath.inputs.ca1": [[199, 3, 1, "", "ca1_interactions"]], "pypath.inputs.cancercellmap": [[201, 3, 1, "", "ccmap_interactions"]], "pypath.inputs.cancerdrugsdb": [[203, 3, 1, "", "cancerdrugsdb_annotations"], [204, 3, 1, "", "cancerdrugsdb_download"], [205, 3, 1, "", "cancerdrugsdb_interactions"]], "pypath.inputs.cancersea": [[207, 3, 1, "", "cancersea_annotations"]], "pypath.inputs.cell": [[209, 3, 1, "", "cell_supplementary"]], "pypath.inputs.cellcall": [[211, 3, 1, "", "cellcall_annotations"], [212, 3, 1, "", "cellcall_download"], [213, 3, 1, "", "cellcall_download_all"], [214, 3, 1, "", "cellcall_interactions"]], "pypath.inputs.cellcellinteractions": [[216, 3, 1, "", "cellcellinteractions_annotations"]], "pypath.inputs.cellchatdb": [[218, 3, 1, "", "cellchatdb_annotations"], [219, 3, 1, "", "cellchatdb_cofactors"], [220, 3, 1, "", "cellchatdb_complexes"], [221, 3, 1, "", "cellchatdb_download"], [222, 3, 1, "", "cellchatdb_interactions"]], "pypath.inputs.cellinker": [[224, 1, 1, "", "CellinkerInteraction"], [225, 3, 1, "", "cellinker_annotations"], [226, 3, 1, "", "cellinker_complex_annotations"], [227, 3, 1, "", "cellinker_complexes"], [228, 3, 1, "", "cellinker_complexes_raw"], [229, 3, 1, "", "cellinker_lr_interactions"], [230, 3, 1, "", "cellinker_lr_interactions_raw"], [231, 3, 1, "", "cellinker_protein_annotations"], [232, 3, 1, "", "cellinker_smol_interactions"], [233, 3, 1, "", "cellinker_smol_interactions_raw"], [234, 3, 1, "", "components_to_complex"]], "pypath.inputs.cellinker.CellinkerInteraction": [[224, 2, 1, "", "__init__"], [224, 2, 1, "", "count"], [224, 2, 1, "", "index"], [224, 4, 1, "", "ligand"], [224, 4, 1, "", "ligand_location"], [224, 4, 1, "", "pmids"], [224, 4, 1, "", "receptor"], [224, 4, 1, "", "receptor_location"], [224, 4, 1, "", "resources"], [224, 4, 1, "", "type"]], "pypath.inputs.cellphonedb": [[236, 1, 1, "", "CellPhoneDBAnnotation"], [237, 3, 1, "", "cellphonedb_complex_annotations"], [238, 3, 1, "", "cellphonedb_complexes"], [239, 3, 1, "", "cellphonedb_interactions"], [240, 3, 1, "", "cellphonedb_ligands_receptors"], [241, 3, 1, "", "cellphonedb_protein_annotations"]], "pypath.inputs.cellphonedb.CellPhoneDBAnnotation": [[236, 2, 1, "", "__init__"], [236, 2, 1, "", "count"], [236, 2, 1, "", "index"], [236, 4, 1, "", "integrin"], [236, 4, 1, "", "peripheral"], [236, 4, 1, "", "receptor"], [236, 4, 1, "", "receptor_class"], [236, 4, 1, "", "secreted"], [236, 4, 1, "", "secreted_class"], [236, 4, 1, "", "transmembrane"]], "pypath.inputs.celltalkdb": [[243, 3, 1, "", "celltalkdb_annotations"], [244, 3, 1, "", "celltalkdb_download"], [245, 3, 1, "", "celltalkdb_interactions"]], "pypath.inputs.celltypist": [[247, 3, 1, "", "celltypist_annotations"]], "pypath.inputs.chembl": [[249, 3, 1, "", "chembl_activities"], [250, 3, 1, "", "chembl_assays"], [251, 3, 1, "", "chembl_documents"], [252, 3, 1, "", "chembl_drug_indications"], [253, 3, 1, "", "chembl_mechanisms"], [254, 3, 1, "", "chembl_molecules"], [255, 3, 1, "", "chembl_targets"]], "pypath.inputs.clinvar": [[257, 3, 1, "", "clinvar_citations"], [258, 3, 1, "", "clinvar_raw"]], "pypath.inputs.collectri": [[260, 3, 1, "", "collectri_interactions"], [261, 3, 1, "", "collectri_raw"]], "pypath.inputs.common": [[263, 3, 1, "", "csv_sep_change"], [264, 3, 1, "", "glom_fields"], [265, 3, 1, "", "json_extract"], [266, 3, 1, "", "json_read"], [267, 3, 1, "", "read_table"], [268, 3, 1, "", "read_xls"]], "pypath.inputs.compath": [[270, 3, 1, "", "compath_mappings"]], "pypath.inputs.compleat": [[272, 3, 1, "", "compleat_complexes"], [273, 3, 1, "", "compleat_raw"]], "pypath.inputs.complexportal": [[275, 3, 1, "", "complexportal_complexes"]], "pypath.inputs.comppi": [[277, 3, 1, "", "comppi_interaction_locations"], [278, 3, 1, "", "comppi_locations"]], "pypath.inputs.connectomedb": [[280, 3, 1, "", "connectomedb_annotations"], [281, 3, 1, "", "connectomedb_interactions"]], "pypath.inputs.corum": [[283, 3, 1, "", "corum_complexes"]], "pypath.inputs.cosmic": [[285, 3, 1, "", "cancer_gene_census_annotations"]], "pypath.inputs.cpad": [[287, 3, 1, "", "cpad_annotations"], [288, 3, 1, "", "cpad_pathway_cancer"], [289, 3, 1, "", "get_cpad"]], "pypath.inputs.cpdb": [[291, 3, 1, "", "cpdb_interactions"], [292, 3, 1, "", "cpdb_interactions_ltp"]], "pypath.inputs.credentials": [[294, 3, 1, "", "credentials"]], "pypath.inputs.csa": [[296, 3, 1, "", "get_csa"]], "pypath.inputs.cspa": [[298, 3, 1, "", "cspa_annotations"], [299, 3, 1, "", "cspa_cell_type_annotations"], [300, 3, 1, "", "cspa_cell_types"]], "pypath.inputs.ctdbase": [[302, 3, 1, "", "ctdbase_relations"], [303, 3, 1, "", "ctdbase_vocabulary"]], "pypath.inputs.cytosig": [[305, 3, 1, "", "cytosig_annotations"], [306, 3, 1, "", "cytosig_df"]], "pypath.inputs.dbptm": [[308, 3, 1, "", "dbptm_enzyme_substrate"], [309, 3, 1, "", "dbptm_enzyme_substrate_old"], [310, 3, 1, "", "dbptm_interactions"]], "pypath.inputs.ddinter": [[312, 3, 1, "", "ddinter_drug_interactions"], [313, 3, 1, "", "ddinter_identifiers"], [314, 3, 1, "", "ddinter_interactions"], [315, 3, 1, "", "ddinter_mappings"], [316, 3, 1, "", "ddinter_n_drugs"]], "pypath.inputs.deathdomain": [[318, 3, 1, "", "deathdomain_interactions"], [319, 3, 1, "", "deathdomain_interactions_rescued"]], "pypath.inputs.depod": [[321, 3, 1, "", "depod_enzyme_substrate"], [322, 3, 1, "", "depod_interactions"]], "pypath.inputs.dgidb": [[324, 3, 1, "", "dgidb_annotations"], [325, 3, 1, "", "dgidb_interactions"], [326, 3, 1, "", "get_dgidb_old"]], "pypath.inputs.dip": [[328, 3, 1, "", "dip_interactions"], [329, 3, 1, "", "dip_login"]], "pypath.inputs.diseases": [[331, 3, 1, "", "diseases_general"], [332, 3, 1, "", "experiments_filtered"], [333, 3, 1, "", "experiments_full"], [334, 3, 1, "", "knowledge_filtered"], [335, 3, 1, "", "knowledge_full"], [336, 3, 1, "", "textmining_filtered"], [337, 3, 1, "", "textmining_full"]], "pypath.inputs.domino": [[339, 3, 1, "", "domino_ddi"], [340, 3, 1, "", "domino_enzsub"], [341, 3, 1, "", "domino_interactions"], [342, 3, 1, "", "get_domino"]], "pypath.inputs.dorothea": [[344, 1, 1, "", "DorotheaInteraction"], [345, 3, 1, "", "dorothea_full_raw"], [346, 3, 1, "", "dorothea_interactions"], [347, 3, 1, "", "dorothea_interactions_old"], [348, 3, 1, "", "dorothea_old_csv"], [349, 3, 1, "", "dorothea_rda_raw"], [350, 3, 1, "", "get_dorothea_old"], [351, 3, 1, "", "get_tfregulons"], [352, 3, 1, "", "tfregulons_interactions"], [353, 3, 1, "", "tfregulons_interactions_old"]], "pypath.inputs.dorothea.DorotheaInteraction": [[344, 2, 1, "", "__init__"], [344, 4, 1, "", "all_sources"], [344, 4, 1, "", "chipseq"], [344, 4, 1, "", "chipseq_sources"], [344, 4, 1, "", "coexp"], [344, 4, 1, "", "coexp_sources"], [344, 2, 1, "", "count"], [344, 4, 1, "", "curated"], [344, 4, 1, "", "curated_sources"], [344, 4, 1, "", "effect"], [344, 2, 1, "", "index"], [344, 4, 1, "", "kegg_pathways"], [344, 4, 1, "", "level"], [344, 4, 1, "", "predicted"], [344, 4, 1, "", "predicted_sources"], [344, 4, 1, "", "pubmed"], [344, 4, 1, "", "target"], [344, 4, 1, "", "tf"]], "pypath.inputs.drugbank": [[355, 1, 1, "", "DrugbankFull"], [356, 3, 1, "", "drugbank_annotations"], [357, 3, 1, "", "drugbank_drugs"], [358, 3, 1, "", "drugbank_interactions"], [359, 3, 1, "", "drugbank_mapping"], [360, 3, 1, "", "drugbank_raw_interactions"]], "pypath.inputs.drugbank.DrugbankFull": [[355, 2, 1, "", "__init__"], [355, 2, 1, "", "drugbank_drugs_full"], [355, 2, 1, "", "drugbank_external_ids_full"], [355, 2, 1, "", "drugbank_properties_full"], [355, 2, 1, "", "drugbank_targets_full"]], "pypath.inputs.drugcentral": [[362, 3, 1, "", "drugcentral_drugs"], [363, 3, 1, "", "drugcentral_interactions"], [364, 3, 1, "", "drugcentral_mapping"]], "pypath.inputs.ebi": [[366, 3, 1, "", "ebi_rest"]], "pypath.inputs.elm": [[368, 3, 1, "", "elm_classes"], [369, 3, 1, "", "elm_domains"], [370, 3, 1, "", "elm_instances"], [371, 3, 1, "", "elm_interactions"]], "pypath.inputs.embopress": [[373, 3, 1, "", "embopress_supplementary"]], "pypath.inputs.embrace": [[375, 3, 1, "", "embrace_annotations"], [376, 3, 1, "", "embrace_interactions"], [377, 3, 1, "", "embrace_raw"], [378, 3, 1, "", "embrace_translated"]], "pypath.inputs.encode": [[380, 3, 1, "", "encode_tf_mirna_interactions"]], "pypath.inputs.ensembl": [[382, 3, 1, "", "ensembl_organisms"]], "pypath.inputs.eutils": [[384, 3, 1, "", "esummary"]], "pypath.inputs.exocarta": [[386, 3, 1, "", "get_exocarta"], [387, 3, 1, "", "get_vesiclepedia"]], "pypath.inputs.expasy": [[389, 3, 1, "", "expasy_enzyme_classes"], [390, 3, 1, "", "expasy_enzymes"]], "pypath.inputs.genecards": [[392, 3, 1, "", "genecards_datasheet"], [393, 3, 1, "", "genecards_soup"], [394, 3, 1, "", "genecards_summaries"]], "pypath.inputs.go": [[397, 3, 1, "", "get_go_desc"], [398, 3, 1, "", "get_go_quick"], [399, 3, 1, "", "get_goslim"], [400, 3, 1, "", "go_ancestors"], [401, 3, 1, "", "go_ancestors_goose"], [402, 3, 1, "", "go_ancestors_quickgo"], [403, 3, 1, "", "go_annotations"], [404, 3, 1, "", "go_annotations_all"], [405, 3, 1, "", "go_annotations_goa"], [406, 3, 1, "", "go_annotations_goose"], [407, 3, 1, "", "go_annotations_quickgo"], [408, 3, 1, "", "go_annotations_solr"], [409, 3, 1, "", "go_annotations_uniprot"], [410, 3, 1, "", "go_descendants"], [411, 3, 1, "", "go_descendants_goose"], [412, 3, 1, "", "go_descendants_quickgo"], [413, 3, 1, "", "go_descendants_to_ancestors"], [414, 3, 1, "", "go_terms"], [415, 3, 1, "", "go_terms_goose"], [416, 3, 1, "", "go_terms_quickgo"], [417, 3, 1, "", "go_terms_solr"]], "pypath.inputs.gpcrdb": [[419, 3, 1, "", "gpcrdb_annotations"]], "pypath.inputs.graphviz": [[421, 3, 1, "", "graphviz_attrs"]], "pypath.inputs.guide2pharma": [[423, 3, 1, "", "guide2pharma_complexes"], [424, 3, 1, "", "guide2pharma_download"], [425, 3, 1, "", "guide2pharma_interactions"]], "pypath.inputs.gutmgene": [[427, 1, 1, "", "GutmgeneAnnotation"], [428, 1, 1, "", "GutmgeneRaw"], [429, 3, 1, "", "gutmgene_annotations"], [430, 3, 1, "", "gutmgene_raw"]], "pypath.inputs.gutmgene.GutmgeneAnnotation": [[427, 2, 1, "", "__init__"], [427, 4, 1, "", "classification"], [427, 2, 1, "", "count"], [427, 4, 1, "", "effect"], [427, 4, 1, "", "gut_microbiota_id"], [427, 2, 1, "", "index"], [427, 4, 1, "", "microbe_ncbi_tax_id"], [427, 4, 1, "", "microbe_taxon"], [427, 4, 1, "", "throughput"]], "pypath.inputs.gutmgene.GutmgeneRaw": [[428, 2, 1, "", "__init__"], [428, 4, 1, "", "classification"], [428, 2, 1, "", "count"], [428, 4, 1, "", "effect"], [428, 4, 1, "", "entrez"], [428, 4, 1, "", "genesymbol"], [428, 4, 1, "", "gut_microbiota_id"], [428, 2, 1, "", "index"], [428, 4, 1, "", "microbe_ncbi_tax_id"], [428, 4, 1, "", "microbe_taxon"], [428, 4, 1, "", "throughput"]], "pypath.inputs.havugimana": [[432, 3, 1, "", "get_havugimana"], [433, 3, 1, "", "havugimana_complexes"]], "pypath.inputs.hgnc": [[435, 3, 1, "", "hgnc_genegroups"]], "pypath.inputs.hippie": [[437, 3, 1, "", "hippie_interactions"]], "pypath.inputs.hmdb": [[439, 0, 0, "-", "common"], [444, 0, 0, "-", "metabolites"], [449, 0, 0, "-", "proteins"], [454, 0, 0, "-", "schema"], [459, 0, 0, "-", "structures"], [461, 0, 0, "-", "visual"], [464, 0, 0, "-", "xml"]], "pypath.inputs.hmdb.common": [[440, 3, 1, "", "iter"], [441, 3, 1, "", "mapping"], [442, 3, 1, "", "raw"], [443, 3, 1, "", "table"]], "pypath.inputs.hmdb.metabolites": [[445, 3, 1, "", "iter"], [446, 3, 1, "", "mapping"], [447, 3, 1, "", "raw"], [448, 3, 1, "", "table"]], "pypath.inputs.hmdb.proteins": [[450, 3, 1, "", "iter"], [451, 3, 1, "", "mapping"], [452, 3, 1, "", "raw"], [453, 3, 1, "", "table"]], "pypath.inputs.hmdb.schema": [[455, 0, 0, "-", "common"], [457, 0, 0, "-", "metabolites"], [458, 0, 0, "-", "proteins"]], "pypath.inputs.hmdb.schema.common": [[456, 1, 1, "", "Field"]], "pypath.inputs.hmdb.schema.common.Field": [[456, 2, 1, "", "__init__"]], "pypath.inputs.hmdb.structures": [[460, 3, 1, "", "sdf"]], "pypath.inputs.hmdb.visual": [[462, 3, 1, "", "show_structure"], [463, 3, 1, "", "structure_svg"]], "pypath.inputs.hmdb.xml": [[465, 3, 1, "", "hmdb_xml"]], "pypath.inputs.homologene": [[467, 3, 1, "", "get_homologene"], [468, 3, 1, "", "homologene_dict"], [469, 3, 1, "", "homologene_uniprot_dict"]], "pypath.inputs.hpmr": [[471, 1, 1, "", "HpmrInteraction"], [472, 3, 1, "", "get_hpmr"], [473, 3, 1, "", "hpmr_annotations"], [474, 3, 1, "", "hpmr_complexes"], [475, 3, 1, "", "hpmr_interactions"]], "pypath.inputs.hpmr.HpmrInteraction": [[471, 2, 1, "", "__init__"], [471, 2, 1, "", "count"], [471, 2, 1, "", "index"], [471, 4, 1, "", "partner"], [471, 4, 1, "", "partner_role"], [471, 4, 1, "", "receptor"], [471, 4, 1, "", "references"], [471, 4, 1, "", "unambiguous"]], "pypath.inputs.hpo": [[477, 3, 1, "", "hpo_annotations"], [478, 3, 1, "", "hpo_diseases"], [479, 3, 1, "", "hpo_ontology"], [480, 3, 1, "", "hpo_terms"]], "pypath.inputs.hprd": [[482, 3, 1, "", "get_hprd"], [483, 3, 1, "", "hprd_enzyme_substrate"], [484, 3, 1, "", "hprd_interactions"], [485, 3, 1, "", "hprd_interactions_htp"]], "pypath.inputs.htri": [[487, 3, 1, "", "htri_interactions"]], "pypath.inputs.humancellmap": [[489, 3, 1, "", "humancellmap_annotations"]], "pypath.inputs.humap": [[491, 3, 1, "", "humap2_complexes"], [492, 3, 1, "", "humap_complexes"]], "pypath.inputs.humsavar": [[494, 3, 1, "", "uniprot_variants"]], "pypath.inputs.huri": [[496, 3, 1, "", "hi_i_interactions"], [497, 3, 1, "", "hi_ii_interactions"], [498, 3, 1, "", "hi_iii_old"], [499, 3, 1, "", "hi_union_interactions"], [500, 3, 1, "", "huri_interactions"], [501, 3, 1, "", "lit_bm_13_interactions"], [502, 3, 1, "", "lit_bm_17_interactions"], [503, 3, 1, "", "lit_bm_interactions"], [504, 3, 1, "", "rolland_hi_ii_14"], [505, 3, 1, "", "vidal_hi_iii_old"], [506, 3, 1, "", "yang2016_interactions"], [507, 3, 1, "", "yu2011_interactions"]], "pypath.inputs.i3d": [[509, 3, 1, "", "get_i3d"]], "pypath.inputs.icellnet": [[511, 1, 1, "", "IcellnetRecord"], [512, 3, 1, "", "icellnet_annotations"], [513, 3, 1, "", "icellnet_complexes"], [514, 3, 1, "", "icellnet_interactions"]], "pypath.inputs.icellnet.IcellnetRecord": [[511, 2, 1, "", "__init__"], [511, 4, 1, "", "classification"], [511, 2, 1, "", "count"], [511, 4, 1, "", "family"], [511, 2, 1, "", "index"], [511, 4, 1, "", "ligand"], [511, 4, 1, "", "receptor"], [511, 4, 1, "", "references"], [511, 4, 1, "", "resources"], [511, 4, 1, "", "subfamily"]], "pypath.inputs.ielm": [[516, 3, 1, "", "get_ielm"], [517, 3, 1, "", "get_ielm_huge"]], "pypath.inputs.imweb": [[519, 3, 1, "", "get_imweb"], [520, 3, 1, "", "get_imweb_req"]], "pypath.inputs.innatedb": [[522, 3, 1, "", "innatedb_interactions"]], "pypath.inputs.instruct": [[524, 3, 1, "", "get_instruct"], [525, 3, 1, "", "get_instruct_offsets"]], "pypath.inputs.intact": [[527, 3, 1, "", "intact_interactions"]], "pypath.inputs.integrins": [[529, 3, 1, "", "get_integrins"]], "pypath.inputs.interpro": [[531, 3, 1, "", "interpro2go_annotations"], [532, 3, 1, "", "interpro_annotations"], [533, 3, 1, "", "interpro_entries"], [534, 3, 1, "", "interpro_xrefs"]], "pypath.inputs.intogen": [[536, 3, 1, "", "intogen_annotations"]], "pypath.inputs.ipi": [[538, 3, 1, "", "ipi_uniprot"]], "pypath.inputs.iptmnet": [[540, 1, 1, "", "IptmnetInteraction"], [541, 3, 1, "", "iptmnet_interactions"]], "pypath.inputs.iptmnet.IptmnetInteraction": [[540, 2, 1, "", "__init__"], [540, 2, 1, "", "count"], [540, 4, 1, "", "enzyme"], [540, 4, 1, "", "enzyme_isoform"], [540, 2, 1, "", "index"], [540, 4, 1, "", "ptm_type"], [540, 4, 1, "", "references"], [540, 4, 1, "", "resaa"], [540, 4, 1, "", "resnum"], [540, 4, 1, "", "score"], [540, 4, 1, "", "substrate"], [540, 4, 1, "", "substrate_isoform"]], "pypath.inputs.italk": [[543, 3, 1, "", "italk_annotations"], [544, 3, 1, "", "italk_interactions"], [545, 3, 1, "", "italk_raw"]], "pypath.inputs.kea": [[547, 3, 1, "", "kea_enzyme_substrate"], [548, 3, 1, "", "kea_interactions"]], "pypath.inputs.kegg": [[550, 1, 1, "", "KeggPathway"], [551, 3, 1, "", "kegg_dbget"], [552, 3, 1, "", "kegg_interactions"], [553, 3, 1, "", "kegg_medicus"], [554, 3, 1, "", "kegg_medicus_complexes"], [555, 3, 1, "", "kegg_medicus_interactions"], [556, 3, 1, "", "kegg_pathway_annotations"], [557, 3, 1, "", "kegg_pathway_annotations_pathwaycommons"], [558, 3, 1, "", "kegg_pathways"]], "pypath.inputs.kegg.KeggPathway": [[550, 2, 1, "", "__init__"], [550, 2, 1, "", "count"], [550, 2, 1, "", "index"], [550, 4, 1, "", "pathway"]], "pypath.inputs.kegg_api": [[560, 3, 1, "", "disease_to_drug"], [561, 3, 1, "", "disease_to_gene"], [562, 3, 1, "", "disease_to_pathway"], [563, 3, 1, "", "drug_to_disease"], [564, 3, 1, "", "drug_to_drug"], [565, 3, 1, "", "drug_to_gene"], [566, 3, 1, "", "drug_to_pathway"], [567, 3, 1, "", "gene_to_disease"], [568, 3, 1, "", "gene_to_drug"], [569, 3, 1, "", "gene_to_pathway"], [570, 3, 1, "", "kegg_drug_to_chebi"], [571, 3, 1, "", "kegg_gene_to_ncbi_geneid"], [572, 3, 1, "", "kegg_gene_to_uniprot"], [573, 3, 1, "", "pathway_to_disease"], [574, 3, 1, "", "pathway_to_drug"], [575, 3, 1, "", "pathway_to_gene"]], "pypath.inputs.kinasedotcom": [[577, 3, 1, "", "kinasedotcom_annotations"]], "pypath.inputs.kirouac2010": [[579, 3, 1, "", "kirouac2010_interactions"]], "pypath.inputs.lambert2018": [[581, 3, 1, "", "lambert2018_annotations"], [582, 3, 1, "", "lambert2018_s1_raw"]], "pypath.inputs.laudanna": [[584, 3, 1, "", "laudanna_directions"], [585, 3, 1, "", "laudanna_effects"]], "pypath.inputs.li2012": [[587, 3, 1, "", "get_li2012"], [588, 3, 1, "", "li2012_dmi"], [589, 3, 1, "", "li2012_enzyme_substrate"], [590, 3, 1, "", "li2012_interactions"]], "pypath.inputs.lincs": [[592, 3, 1, "", "lincs_compounds"]], "pypath.inputs.lmpid": [[594, 3, 1, "", "lmpid_dmi"], [595, 3, 1, "", "lmpid_interactions"], [596, 3, 1, "", "load_lmpid"]], "pypath.inputs.lncdisease": [[598, 3, 1, "", "lncdisease_interactions"]], "pypath.inputs.lncrnadb": [[600, 3, 1, "", "lncrnadb_interactions"]], "pypath.inputs.locate": [[602, 3, 1, "", "locate_localizations"]], "pypath.inputs.lrdb": [[604, 1, 1, "", "LrdbAnnotation"], [605, 3, 1, "", "lrdb_annotations"], [606, 3, 1, "", "lrdb_interactions"]], "pypath.inputs.lrdb.LrdbAnnotation": [[604, 2, 1, "", "__init__"], [604, 4, 1, "", "cell_type"], [604, 2, 1, "", "count"], [604, 2, 1, "", "index"], [604, 4, 1, "", "references"], [604, 4, 1, "", "role"], [604, 4, 1, "", "sources"]], "pypath.inputs.macrophage": [[608, 3, 1, "", "macrophage_interactions"]], "pypath.inputs.matrisome": [[611, 3, 1, "", "matrisome_annotations"]], "pypath.inputs.matrixdb": [[613, 3, 1, "", "matrixdb_annotations"], [614, 3, 1, "", "matrixdb_ecm_proteins"], [615, 3, 1, "", "matrixdb_interactions"], [616, 3, 1, "", "matrixdb_membrane_proteins"], [617, 3, 1, "", "matrixdb_secreted_proteins"]], "pypath.inputs.mcam": [[619, 3, 1, "", "mcam_cell_adhesion_molecules"]], "pypath.inputs.membranome": [[621, 3, 1, "", "membranome_annotations"]], "pypath.inputs.mimp": [[623, 3, 1, "", "get_kinase_class"], [624, 3, 1, "", "mimp_enzyme_substrate"], [625, 3, 1, "", "mimp_interactions"]], "pypath.inputs.mir2disease": [[627, 3, 1, "", "mir2disease_interactions"]], "pypath.inputs.mirbase": [[629, 3, 1, "", "get_mirbase_aliases"], [630, 3, 1, "", "mirbase_ids"], [631, 3, 1, "", "mirbase_mature"], [632, 3, 1, "", "mirbase_mature_all"], [633, 3, 1, "", "mirbase_precursor"], [634, 3, 1, "", "mirbase_precursor_all"], [635, 3, 1, "", "mirbase_precursor_to_mature"]], "pypath.inputs.mirdeathdb": [[637, 3, 1, "", "mirdeathdb_interactions"]], "pypath.inputs.mirecords": [[639, 3, 1, "", "mirecords_interactions"]], "pypath.inputs.mirtarbase": [[641, 3, 1, "", "mirtarbase_interactions"]], "pypath.inputs.mitab": [[643, 3, 1, "", "mitab_field_list"], [644, 3, 1, "", "mitab_field_uniprot"]], "pypath.inputs.mppi": [[646, 3, 1, "", "mppi_interactions"]], "pypath.inputs.msigdb": [[648, 3, 1, "", "msigdb_annotations"], [649, 3, 1, "", "msigdb_download"], [650, 3, 1, "", "msigdb_download_collections"]], "pypath.inputs.ncrdeathdb": [[652, 3, 1, "", "ncrdeathdb_interactions"]], "pypath.inputs.negatome": [[654, 3, 1, "", "negatome_interactions"]], "pypath.inputs.netbiol": [[656, 3, 1, "", "arn_interactions"], [657, 3, 1, "", "nrf2ome_interactions"]], "pypath.inputs.netpath": [[659, 3, 1, "", "netpath_interactions"], [660, 3, 1, "", "netpath_names"], [661, 3, 1, "", "netpath_pathway_annotations"]], "pypath.inputs.offsides": [[663, 3, 1, "", "offsides_side_effects"]], "pypath.inputs.oma": [[665, 3, 1, "", "oma_orthologs"], [666, 3, 1, "", "oma_table"]], "pypath.inputs.ontology": [[668, 3, 1, "", "listof_ontologies"], [669, 3, 1, "", "ontology"]], "pypath.inputs.opentargets": [[671, 3, 1, "", "opentargets_adverse_reactions"], [672, 3, 1, "", "opentargets_baseline_expression"], [673, 3, 1, "", "opentargets_direct_score"], [674, 3, 1, "", "opentargets_general"], [675, 3, 1, "", "opentargets_indirect_score"]], "pypath.inputs.opm": [[677, 3, 1, "", "opm_annotations"]], "pypath.inputs.oreganno": [[679, 3, 1, "", "oreganno_interactions"], [680, 3, 1, "", "oreganno_raw"]], "pypath.inputs.panglaodb": [[682, 3, 1, "", "panglaodb_annotations"], [683, 3, 1, "", "panglaodb_raw"]], "pypath.inputs.pathophenodb": [[685, 1, 1, "", "DiseasePathogen"], [686, 3, 1, "", "disease_pathogen_interactions"]], "pypath.inputs.pathophenodb.DiseasePathogen": [[685, 2, 1, "", "__init__"], [685, 2, 1, "", "count"], [685, 4, 1, "", "disease"], [685, 4, 1, "", "disease_id"], [685, 4, 1, "", "evidence"], [685, 2, 1, "", "index"], [685, 4, 1, "", "pathogen"], [685, 4, 1, "", "pathogen_taxid"]], "pypath.inputs.pathwaycommons": [[688, 1, 1, "", "PathwayCommonsInteraction"], [689, 1, 1, "", "PathwayCommonsResource"], [690, 3, 1, "", "pathwaycommons_bind_interactions"], [691, 3, 1, "", "pathwaycommons_biogrid_interactions"], [692, 3, 1, "", "pathwaycommons_corum_interactions"], [693, 3, 1, "", "pathwaycommons_dip_interactions"], [694, 3, 1, "", "pathwaycommons_hprd_interactions"], [695, 3, 1, "", "pathwaycommons_inoh_interactions"], [696, 3, 1, "", "pathwaycommons_intact_interactions"], [697, 3, 1, "", "pathwaycommons_interactions"], [698, 3, 1, "", "pathwaycommons_kegg_interactions"], [699, 3, 1, "", "pathwaycommons_netpath_interactions"], [700, 3, 1, "", "pathwaycommons_panther_interactions"], [701, 3, 1, "", "pathwaycommons_phosphosite_interactions"], [702, 3, 1, "", "pathwaycommons_reactome_interactions"], [703, 3, 1, "", "pathwaycommons_wikipathways_interactions"]], "pypath.inputs.pathwaycommons.PathwayCommonsInteraction": [[688, 2, 1, "", "__init__"], [688, 2, 1, "", "count"], [688, 4, 1, "", "id_a"], [688, 4, 1, "", "id_b"], [688, 2, 1, "", "index"], [688, 4, 1, "", "interaction_type"], [688, 4, 1, "", "resource"]], "pypath.inputs.pathwaycommons.PathwayCommonsResource": [[689, 2, 1, "", "__init__"], [689, 2, 1, "", "count"], [689, 2, 1, "", "index"], [689, 4, 1, "", "name"], [689, 4, 1, "", "pc_label"], [689, 4, 1, "", "version"]], "pypath.inputs.pazar": [[705, 3, 1, "", "pazar_interactions"]], "pypath.inputs.pdb": [[707, 3, 1, "", "pdb_chains"], [708, 3, 1, "", "pdb_complexes"], [709, 3, 1, "", "pdb_uniprot"]], "pypath.inputs.pdzbase": [[711, 3, 1, "", "pdzbase_interactions"]], "pypath.inputs.pepcyber": [[713, 3, 1, "", "pepcyber_details"], [714, 3, 1, "", "pepcyber_interactions"]], "pypath.inputs.pfam": [[716, 3, 1, "", "pfam_names"], [717, 3, 1, "", "pfam_pdb"], [718, 3, 1, "", "pfam_regions"], [719, 3, 1, "", "pfam_uniprot"]], "pypath.inputs.pharos": [[721, 3, 1, "", "pharos_diseases"], [722, 3, 1, "", "pharos_expression"], [723, 3, 1, "", "pharos_general"], [724, 3, 1, "", "pharos_gtex"], [725, 3, 1, "", "pharos_ligands"], [726, 3, 1, "", "pharos_orthologs"], [727, 3, 1, "", "pharos_targets"], [728, 3, 1, "", "pharos_xrefs"]], "pypath.inputs.phobius": [[730, 3, 1, "", "phobius_annotations"]], "pypath.inputs.phosphatome": [[732, 3, 1, "", "phosphatome_annotations"]], "pypath.inputs.phosphoelm": [[734, 3, 1, "", "phosphoelm_enzyme_substrate"], [735, 3, 1, "", "phosphoelm_interactions"], [736, 3, 1, "", "phosphoelm_kinases"]], "pypath.inputs.phosphonetworks": [[738, 3, 1, "", "phosphonetworks_enzyme_substrate"], [739, 3, 1, "", "phosphonetworks_interactions"]], "pypath.inputs.phosphopoint": [[741, 3, 1, "", "phosphopoint_directions"], [742, 3, 1, "", "phosphopoint_interactions"]], "pypath.inputs.phosphosite": [[744, 3, 1, "", "phosphosite_directions"], [745, 3, 1, "", "phosphosite_enzyme_substrate"], [746, 3, 1, "", "phosphosite_interactions"], [747, 3, 1, "", "phosphosite_interactions_all"], [748, 3, 1, "", "phosphosite_interactions_curated"], [749, 3, 1, "", "phosphosite_interactions_new"], [750, 3, 1, "", "phosphosite_interactions_noref"], [751, 3, 1, "", "phosphosite_ptm_orthology"], [752, 3, 1, "", "phosphosite_ptms"], [753, 3, 1, "", "phosphosite_regsites"], [754, 3, 1, "", "phosphosite_regsites_one_organism"], [755, 3, 1, "", "regsites_tab"]], "pypath.inputs.pisa": [[757, 1, 1, "", "PisaBond"], [758, 3, 1, "", "pisa_bonds"], [759, 3, 1, "", "pisa_interfaces"]], "pypath.inputs.pisa.PisaBond": [[757, 2, 1, "", "__init__"], [757, 4, 1, "", "chain_1"], [757, 4, 1, "", "chain_2"], [757, 2, 1, "", "count"], [757, 2, 1, "", "index"], [757, 4, 1, "", "residue_1"], [757, 4, 1, "", "residue_2"], [757, 4, 1, "", "seqnum_1"], [757, 4, 1, "", "seqnum_2"], [757, 4, 1, "", "uniprot_1"], [757, 4, 1, "", "uniprot_2"]], "pypath.inputs.pro": [[761, 3, 1, "", "get_pro"], [762, 3, 1, "", "pro_mapping"]], "pypath.inputs.progeny": [[764, 3, 1, "", "progeny_annotations"], [765, 3, 1, "", "progeny_raw"]], "pypath.inputs.proteinatlas": [[767, 3, 1, "", "get_proteinatlas"], [768, 3, 1, "", "proteinatlas_annotations"], [769, 3, 1, "", "proteinatlas_secretome_annotations"], [770, 3, 1, "", "proteinatlas_subcellular_annotations"]], "pypath.inputs.proteins": [[772, 3, 1, "", "variants"]], "pypath.inputs.protmapper": [[774, 3, 1, "", "get_protmapper"], [775, 3, 1, "", "protmapper_enzyme_substrate"], [776, 3, 1, "", "protmapper_interactions"]], "pypath.inputs.pubchem": [[778, 3, 1, "", "pubchem_mapping"]], "pypath.inputs.pubmed": [[780, 3, 1, "", "get_pmid"], [781, 3, 1, "", "get_pubmeds"], [782, 3, 1, "", "only_pmids"], [783, 3, 1, "", "open_pubmed"], [784, 3, 1, "", "pmids_dict"], [785, 3, 1, "", "pmids_list"]], "pypath.inputs.ramilowski2015": [[787, 3, 1, "", "ramilowski_interactions"], [788, 3, 1, "", "ramilowski_locations"]], "pypath.inputs.ramp": [[790, 3, 1, "", "ramp_id_types"], [791, 3, 1, "", "ramp_id_types_2"], [792, 3, 1, "", "ramp_list_tables"], [793, 3, 1, "", "ramp_mapping"], [794, 3, 1, "", "ramp_raw"], [795, 3, 1, "", "ramp_show_tables"]], "pypath.inputs.reaction": [[798, 3, 1, "", "acsn_biopax"], [799, 3, 1, "", "acsn_interactions_2"], [800, 3, 1, "", "get_acsn_effects"], [801, 3, 1, "", "get_controls"], [802, 3, 1, "", "get_interactions"], [803, 3, 1, "", "get_reactions"], [804, 3, 1, "", "get_soup"], [805, 3, 1, "", "panther_biopax"], [806, 3, 1, "", "panther_interactions"], [807, 3, 1, "", "pid_biopax"], [808, 3, 1, "", "pid_interactions"], [809, 3, 1, "", "process_complex"], [810, 3, 1, "", "process_controls"], [811, 3, 1, "", "process_reactions"], [812, 3, 1, "", "reactions_biopax"], [813, 3, 1, "", "reactome_biopax"], [814, 3, 1, "", "reactome_bs"], [815, 3, 1, "", "reactome_interactions"], [816, 3, 1, "", "reactome_sbml"]], "pypath.inputs.reactome": [[818, 3, 1, "", "reactome_chebis"], [819, 3, 1, "", "reactome_pathway_relations"], [820, 3, 1, "", "reactome_pathways"], [821, 3, 1, "", "reactome_uniprots"]], "pypath.inputs.scconnect": [[823, 3, 1, "", "scconnect_annotations"], [824, 3, 1, "", "scconnect_complexes"], [825, 3, 1, "", "scconnect_interactions"]], "pypath.inputs.science": [[827, 3, 1, "", "science_download"]], "pypath.inputs.sider": [[829, 1, 1, "", "SiderDrug"], [830, 1, 1, "", "SiderSideeffect"], [831, 1, 1, "", "SiderSideeffectMeddra"], [832, 1, 1, "", "SiderSideeffetFrequency"], [833, 3, 1, "", "sider_drug_names"], [834, 3, 1, "", "sider_meddra_side_effects"], [835, 3, 1, "", "sider_side_effect_frequencies"], [836, 3, 1, "", "sider_side_effects"]], "pypath.inputs.sider.SiderDrug": [[829, 2, 1, "", "__init__"], [829, 4, 1, "", "atc"], [829, 2, 1, "", "count"], [829, 2, 1, "", "index"], [829, 4, 1, "", "name"]], "pypath.inputs.sider.SiderSideeffect": [[830, 2, 1, "", "__init__"], [830, 2, 1, "", "count"], [830, 2, 1, "", "index"], [830, 4, 1, "", "side_effect"], [830, 4, 1, "", "umls_concept_in_meddra"], [830, 4, 1, "", "umls_concept_on_label"]], "pypath.inputs.sider.SiderSideeffectMeddra": [[831, 2, 1, "", "__init__"], [831, 4, 1, "", "cid"], [831, 2, 1, "", "count"], [831, 2, 1, "", "index"], [831, 4, 1, "", "meddra_id"], [831, 4, 1, "", "side_effect_name"]], "pypath.inputs.sider.SiderSideeffetFrequency": [[832, 2, 1, "", "__init__"], [832, 2, 1, "", "count"], [832, 4, 1, "", "frequency"], [832, 2, 1, "", "index"], [832, 4, 1, "", "side_effect"], [832, 4, 1, "", "umls_concept_in_meddra"], [832, 4, 1, "", "umls_concept_on_label"]], "pypath.inputs.signalink": [[838, 3, 1, "", "signalink_annotations"], [839, 3, 1, "", "signalink_function_annotations"], [840, 3, 1, "", "signalink_interactions"], [841, 3, 1, "", "signalink_pathway_annotations"]], "pypath.inputs.signor": [[843, 3, 1, "", "signor_complexes"], [844, 3, 1, "", "signor_enzyme_substrate"], [845, 3, 1, "", "signor_interactions"], [846, 3, 1, "", "signor_pathway_annotations"], [847, 3, 1, "", "signor_pathways"], [848, 3, 1, "", "signor_protein_families"]], "pypath.inputs.spike": [[850, 3, 1, "", "spike_complexes"], [851, 3, 1, "", "spike_interactions"]], "pypath.inputs.stitch": [[853, 3, 1, "", "stitch_actions_interactions"], [854, 3, 1, "", "stitch_links_interactions"]], "pypath.inputs.string": [[856, 3, 1, "", "string_effects"], [857, 3, 1, "", "string_links_interactions"], [858, 3, 1, "", "string_physical_interactions"], [859, 3, 1, "", "string_species"]], "pypath.inputs.surfaceome": [[861, 3, 1, "", "surfaceome_annotations"]], "pypath.inputs.switches_elm": [[863, 3, 1, "", "get_switches_elm"]], "pypath.inputs.talklr": [[865, 3, 1, "", "talklr_annotations"], [866, 3, 1, "", "talklr_interactions"], [867, 3, 1, "", "talklr_raw"]], "pypath.inputs.tcdb": [[869, 3, 1, "", "tcdb_annotations"], [870, 3, 1, "", "tcdb_classes"], [871, 3, 1, "", "tcdb_families"]], "pypath.inputs.tfcensus": [[873, 3, 1, "", "tfcensus_annotations"]], "pypath.inputs.threedcomplex": [[875, 3, 1, "", "threedcomplex_chains"], [876, 3, 1, "", "threedcomplex_complexes"], [877, 3, 1, "", "threedcomplex_contacts"], [878, 3, 1, "", "threedcomplex_ddi"], [879, 3, 1, "", "threedcomplex_nresidues"]], "pypath.inputs.threedid": [[881, 3, 1, "", "get_3did"], [882, 3, 1, "", "get_3did_ddi"], [883, 3, 1, "", "get_3did_dmi"], [884, 3, 1, "", "process_3did_dmi"]], "pypath.inputs.topdb": [[886, 3, 1, "", "topdb_annotations"]], "pypath.inputs.transmir": [[888, 3, 1, "", "transmir_interactions"]], "pypath.inputs.trip": [[890, 3, 1, "", "take_a_trip"], [891, 3, 1, "", "trip_find_uniprot"], [892, 3, 1, "", "trip_get_uniprot"], [893, 3, 1, "", "trip_interactions"], [894, 3, 1, "", "trip_process"], [895, 3, 1, "", "trip_process_table"]], "pypath.inputs.trrust": [[897, 3, 1, "", "trrust_human"], [898, 3, 1, "", "trrust_interactions"], [899, 3, 1, "", "trrust_mouse"]], "pypath.inputs.twosides": [[901, 3, 1, "", "twosides_interactions"]], "pypath.inputs.unichem": [[903, 3, 1, "", "info"], [904, 3, 1, "", "unichem_info"], [905, 3, 1, "", "unichem_mapping"], [906, 3, 1, "", "unichem_sources"]], "pypath.inputs.uniprot": [[908, 1, 1, "", "Taxon"], [909, 1, 1, "", "UniprotQuery"], [910, 1, 1, "", "UniprotRecordHistory"], [911, 3, 1, "", "deleted_uniprot_genesymbol"], [912, 3, 1, "", "get_uniprot_sec"], [913, 3, 1, "", "idmapping_idtypes"], [914, 3, 1, "", "protein_datasheet"], [915, 3, 1, "", "query_builder"], [916, 3, 1, "", "swissprot_deleted"], [917, 3, 1, "", "trembl_deleted"], [918, 3, 1, "", "uniprot_data"], [919, 3, 1, "", "uniprot_deleted"], [920, 3, 1, "", "uniprot_families"], [921, 3, 1, "", "uniprot_history"], [922, 3, 1, "", "uniprot_history_recent_datasheet"], [923, 3, 1, "", "uniprot_keywords"], [924, 3, 1, "", "uniprot_locations"], [925, 3, 1, "", "uniprot_ncbi_taxids"], [926, 3, 1, "", "uniprot_ncbi_taxids_2"], [927, 3, 1, "", "uniprot_preprocess"], [928, 3, 1, "", "uniprot_query"], [929, 3, 1, "", "uniprot_recent_version"], [930, 3, 1, "", "uniprot_taxonomy"], [931, 3, 1, "", "uniprot_tissues"], [932, 3, 1, "", "uniprot_topology"], [933, 3, 1, "", "valid_uniprot"]], "pypath.inputs.uniprot.Taxon": [[908, 2, 1, "", "__init__"], [908, 2, 1, "", "count"], [908, 4, 1, "", "english"], [908, 2, 1, "", "index"], [908, 4, 1, "", "latin"], [908, 4, 1, "", "latin_synonym"], [908, 4, 1, "", "ncbi_id"]], "pypath.inputs.uniprot.UniprotQuery": [[909, 2, 1, "", "__init__"], [909, 2, 1, "", "__iter__"], [909, 4, 1, "", "fail_on_empty"], [909, 4, 1, "", "name_process"], [909, 2, 1, "", "perform"], [909, 5, 1, "", "url"], [909, 5, 1, "", "url_plain"]], "pypath.inputs.uniprot.UniprotRecordHistory": [[910, 2, 1, "", "__init__"], [910, 2, 1, "", "count"], [910, 4, 1, "", "database"], [910, 4, 1, "", "date"], [910, 4, 1, "", "entry_name"], [910, 4, 1, "", "entry_version"], [910, 2, 1, "", "index"], [910, 4, 1, "", "number"], [910, 4, 1, "", "replaced_by"], [910, 4, 1, "", "replaces"], [910, 4, 1, "", "sequence_version"]], "pypath.inputs.uniprot_db": [[935, 3, 1, "", "all_swissprots"], [936, 3, 1, "", "all_trembls"], [937, 3, 1, "", "all_uniprots"], [938, 3, 1, "", "get_db"], [939, 3, 1, "", "init_db"], [940, 3, 1, "", "is_swissprot"], [941, 3, 1, "", "is_trembl"], [942, 3, 1, "", "is_uniprot"]], "pypath.inputs.wang": [[944, 3, 1, "", "cui_interactions"], [945, 3, 1, "", "hsn_interactions"], [946, 3, 1, "", "wang_annotations"], [947, 3, 1, "", "wang_interactions"]], "pypath.inputs.wojtowicz2020": [[949, 3, 1, "", "wojtowicz2020_interactions"], [950, 3, 1, "", "wojtowicz2020_raw"]], "pypath.inputs.zhong2015": [[952, 3, 1, "", "zhong2015_annotations"]], "pypath.internals": [[954, 0, 0, "-", "annot_formats"], [959, 0, 0, "-", "input_formats"], [973, 0, 0, "-", "intera"], [983, 0, 0, "-", "license"], [989, 0, 0, "-", "maps"], [990, 0, 0, "-", "refs"], [993, 0, 0, "-", "resource"]], "pypath.internals.annot_formats": [[955, 1, 1, "", "AnnotDef"], [956, 1, 1, "", "AnnotDefKey"], [957, 1, 1, "", "AnnotOp"], [958, 1, 1, "", "AnnotationGroup"]], "pypath.internals.annot_formats.AnnotDef": [[955, 2, 1, "", "__init__"], [955, 4, 1, "", "args"], [955, 4, 1, "", "aspect"], [955, 4, 1, "", "avoid"], [955, 2, 1, "", "count"], [955, 4, 1, "", "enabled"], [955, 4, 1, "", "exclude"], [955, 2, 1, "", "index"], [955, 4, 1, "", "limit"], [955, 4, 1, "", "name"], [955, 4, 1, "", "parent"], [955, 4, 1, "", "receiver"], [955, 4, 1, "", "resource"], [955, 4, 1, "", "resource_name"], [955, 4, 1, "", "scope"], [955, 4, 1, "", "source"], [955, 4, 1, "", "transmitter"]], "pypath.internals.annot_formats.AnnotDefKey": [[956, 2, 1, "", "__init__"], [956, 2, 1, "", "count"], [956, 2, 1, "", "index"], [956, 4, 1, "", "name"], [956, 4, 1, "", "parent"], [956, 4, 1, "", "resource"]], "pypath.internals.annot_formats.AnnotOp": [[957, 2, 1, "", "__init__"], [957, 4, 1, "", "annots"], [957, 2, 1, "", "count"], [957, 2, 1, "", "index"], [957, 4, 1, "", "op"]], "pypath.internals.annot_formats.AnnotationGroup": [[958, 2, 1, "", "__init__"], [958, 2, 1, "", "filter_entity_type"], [958, 2, 1, "", "isdisjoint"]], "pypath.internals.input_formats": [[960, 1, 1, "", "ArrayMapping"], [961, 1, 1, "", "BiomartMapping"], [962, 1, 1, "", "FileMapping"], [963, 1, 1, "", "HmdbMapping"], [964, 1, 1, "", "MappingInput"], [965, 1, 1, "", "NetworkInput"], [966, 1, 1, "", "PickleMapping"], [967, 1, 1, "", "ProMapping"], [968, 1, 1, "", "RampMapping"], [969, 1, 1, "", "ReadList"], [970, 1, 1, "", "UnichemMapping"], [971, 1, 1, "", "UniprotListMapping"], [972, 1, 1, "", "UniprotMapping"]], "pypath.internals.input_formats.ArrayMapping": [[960, 2, 1, "", "__init__"]], "pypath.internals.input_formats.BiomartMapping": [[961, 2, 1, "", "__init__"]], "pypath.internals.input_formats.FileMapping": [[962, 2, 1, "", "__init__"]], "pypath.internals.input_formats.HmdbMapping": [[963, 2, 1, "", "__init__"]], "pypath.internals.input_formats.MappingInput": [[964, 2, 1, "", "__init__"]], "pypath.internals.input_formats.NetworkInput": [[965, 2, 1, "", "__init__"]], "pypath.internals.input_formats.PickleMapping": [[966, 2, 1, "", "__init__"]], "pypath.internals.input_formats.ProMapping": [[967, 2, 1, "", "__init__"]], "pypath.internals.input_formats.RampMapping": [[968, 2, 1, "", "__init__"]], "pypath.internals.input_formats.ReadList": [[969, 2, 1, "", "__init__"]], "pypath.internals.input_formats.UnichemMapping": [[970, 2, 1, "", "__init__"]], "pypath.internals.input_formats.UniprotListMapping": [[971, 2, 1, "", "__init__"]], "pypath.internals.input_formats.UniprotMapping": [[972, 2, 1, "", "__init__"], [972, 2, 1, "", "resource_id_type"]], "pypath.internals.intera": [[974, 1, 1, "", "Complex"], [975, 1, 1, "", "Domain"], [976, 1, 1, "", "DomainDomain"], [977, 1, 1, "", "DomainMotif"], [978, 1, 1, "", "Interface"], [979, 1, 1, "", "Motif"], [980, 1, 1, "", "Ptm"], [981, 1, 1, "", "Regulation"], [982, 1, 1, "", "Residue"]], "pypath.internals.intera.Complex": [[974, 2, 1, "", "__init__"], [974, 2, 1, "", "add_attr"], [974, 2, 1, "", "merge"]], "pypath.internals.intera.Domain": [[975, 2, 1, "", "__init__"]], "pypath.internals.intera.DomainDomain": [[976, 2, 1, "", "__init__"]], "pypath.internals.intera.DomainMotif": [[977, 2, 1, "", "__init__"], [977, 2, 1, "", "get_line"], [977, 2, 1, "", "key"]], "pypath.internals.intera.Interface": [[978, 2, 1, "", "__init__"], [978, 2, 1, "", "add_residues"], [978, 2, 1, "", "bond_types"], [978, 2, 1, "", "get_bonds"], [978, 2, 1, "", "numof_residues"]], "pypath.internals.intera.Motif": [[979, 2, 1, "", "__init__"]], "pypath.internals.intera.Ptm": [[980, 2, 1, "", "__init__"]], "pypath.internals.intera.Regulation": [[981, 2, 1, "", "__init__"]], "pypath.internals.intera.Residue": [[982, 2, 1, "", "__init__"]], "pypath.internals.license": [[984, 1, 1, "", "License"], [985, 1, 1, "", "LicenseAttrib"], [986, 1, 1, "", "LicenseFeature"], [987, 1, 1, "", "LicensePurpose"], [988, 1, 1, "", "LicenseSharing"]], "pypath.internals.license.License": [[984, 2, 1, "", "__init__"], [984, 2, 1, "", "enables"]], "pypath.internals.license.LicenseAttrib": [[985, 2, 1, "", "__init__"], [985, 2, 1, "", "check_level"], [985, 2, 1, "", "int_to_level"], [985, 2, 1, "", "level_to_int"], [985, 2, 1, "", "to_int"]], "pypath.internals.license.LicenseFeature": [[986, 2, 1, "", "__init__"], [986, 2, 1, "", "check_level"], [986, 2, 1, "", "int_to_level"], [986, 2, 1, "", "level_to_int"], [986, 2, 1, "", "to_int"]], "pypath.internals.license.LicensePurpose": [[987, 2, 1, "", "__init__"], [987, 2, 1, "", "check_level"], [987, 2, 1, "", "int_to_level"], [987, 2, 1, "", "level_to_int"], [987, 2, 1, "", "to_int"]], "pypath.internals.license.LicenseSharing": [[988, 2, 1, "", "__init__"], [988, 2, 1, "", "check_level"], [988, 2, 1, "", "int_to_level"], [988, 2, 1, "", "level_to_int"], [988, 2, 1, "", "to_int"]], "pypath.internals.refs": [[991, 1, 1, "", "Reference"], [992, 3, 1, "", "get_pubmed_data"]], "pypath.internals.refs.Reference": [[991, 2, 1, "", "__init__"]], "pypath.internals.resource": [[994, 1, 1, "", "AbstractResource"], [995, 1, 1, "", "EnzymeSubstrateResource"], [996, 1, 1, "", "EnzymeSubstrateResourceKey"], [997, 1, 1, "", "NetworkDataset"], [998, 1, 1, "", "NetworkResource"], [999, 1, 1, "", "NetworkResourceKey"], [1000, 1, 1, "", "ResourceAttributes"]], "pypath.internals.resource.AbstractResource": [[994, 2, 1, "", "__init__"], [994, 2, 1, "", "load_data"], [994, 2, 1, "", "process"], [994, 2, 1, "", "set_method"]], "pypath.internals.resource.EnzymeSubstrateResource": [[995, 2, 1, "", "__init__"], [995, 2, 1, "", "get_via"]], "pypath.internals.resource.EnzymeSubstrateResourceKey": [[996, 2, 1, "", "__init__"], [996, 2, 1, "", "count"], [996, 4, 1, "", "data_type"], [996, 2, 1, "", "index"], [996, 4, 1, "", "name"], [996, 4, 1, "", "via"]], "pypath.internals.resource.NetworkDataset": [[997, 2, 1, "", "__init__"], [997, 2, 1, "", "clear"], [997, 2, 1, "", "get"], [997, 2, 1, "", "items"], [997, 2, 1, "", "keys"], [997, 2, 1, "", "pop"], [997, 2, 1, "", "popitem"], [997, 2, 1, "", "setdefault"], [997, 2, 1, "", "update"], [997, 2, 1, "", "values"]], "pypath.internals.resource.NetworkResource": [[998, 2, 1, "", "__init__"]], "pypath.internals.resource.NetworkResourceKey": [[999, 2, 1, "", "__init__"], [999, 2, 1, "", "count"], [999, 4, 1, "", "data_model"], [999, 4, 1, "", "data_type"], [999, 2, 1, "", "index"], [999, 4, 1, "", "interaction_type"], [999, 5, 1, "", "label"], [999, 5, 1, "", "last"], [999, 4, 1, "", "name"], [999, 4, 1, "", "via"]], "pypath.internals.resource.ResourceAttributes": [[1000, 2, 1, "", "__init__"]], "pypath.legacy": [[1002, 0, 0, "-", "db_categories"]], "pypath.legacy.db_categories": [[1003, 3, 1, "", "get_categories"], [1004, 3, 1, "", "get_category"]], "pypath.resources": [[1007, 0, 0, "-", "controller"], [1009, 0, 0, "-", "data"], [1010, 0, 0, "-", "data_formats"], [1019, 3, 1, "", "get_controller"], [1020, 0, 0, "-", "licenses"], [1022, 0, 0, "-", "network"], [1026, 0, 0, "-", "urls"]], "pypath.resources.controller": [[1008, 1, 1, "", "ResourceController"]], "pypath.resources.controller.ResourceController": [[1008, 2, 1, "", "__init__"], [1008, 2, 1, "", "add_resource_attrs"], [1008, 2, 1, "", "collect_interaction"], [1008, 2, 1, "", "collect_network"], [1008, 2, 1, "", "license_filter"], [1008, 2, 1, "", "secondary_resources"], [1008, 2, 1, "", "update"]], "pypath.resources.data_formats": [[1011, 6, 1, "", "activity_flow"], [1012, 6, 1, "", "enzyme_substrate"], [1013, 6, 1, "", "interaction"], [1014, 6, 1, "", "interaction_htp"], [1015, 6, 1, "", "pathway_bad"], [1016, 6, 1, "", "reaction_pc"], [1017, 6, 1, "", "transcription_deprecated"], [1018, 6, 1, "", "transcription_onebyone"]], "pypath.resources.licenses": [[1021, 1, 1, "", "Licenses"]], "pypath.resources.licenses.Licenses": [[1021, 2, 1, "", "__init__"]], "pypath.resources.network": [[1023, 3, 1, "", "choose_dataset"], [1024, 3, 1, "", "dataset_priority"], [1025, 3, 1, "", "dorothea_expand_levels"]], "pypath.share": [[1028, 0, 0, "-", "cache"], [1033, 0, 0, "-", "common"], [1034, 0, 0, "-", "constants"], [1035, 0, 0, "-", "curl"], [1052, 0, 0, "-", "progress"], [1054, 0, 0, "-", "session"], [1055, 0, 0, "-", "settings"]], "pypath.share.cache": [[1029, 3, 1, "", "cache_item"], [1030, 3, 1, "", "cache_path"], [1031, 3, 1, "", "default_cachedir"], [1032, 3, 1, "", "get_cachedir"]], "pypath.share.curl": [[1036, 1, 1, "", "Curl"], [1037, 1, 1, "", "FileOpener"], [1038, 1, 1, "", "RemoteFile"], [1039, 1, 1, "", "cache_delete_off"], [1040, 1, 1, "", "cache_delete_on"], [1041, 1, 1, "", "cache_off"], [1042, 1, 1, "", "cache_on"], [1043, 1, 1, "", "cache_print_off"], [1044, 1, 1, "", "cache_print_on"], [1045, 1, 1, "", "debug_off"], [1046, 1, 1, "", "debug_on"], [1047, 1, 1, "", "dryrun_off"], [1048, 1, 1, "", "dryrun_on"], [1049, 3, 1, "", "is_url"], [1050, 1, 1, "", "preserve_off"], [1051, 1, 1, "", "preserve_on"]], "pypath.share.curl.Curl": [[1036, 2, 1, "", "__init__"], [1036, 2, 1, "", "cache_path"], [1036, 2, 1, "", "close"], [1036, 2, 1, "", "construct_binary_data"], [1036, 2, 1, "", "extract"], [1036, 2, 1, "", "is_quoted"], [1036, 2, 1, "", "open"], [1036, 2, 1, "", "open_tgz"], [1036, 2, 1, "", "replace_forbidden"], [1036, 2, 1, "", "set_binary_data"], [1036, 2, 1, "", "url_fix"]], "pypath.share.curl.FileOpener": [[1037, 2, 1, "", "__init__"], [1037, 2, 1, "", "extract"], [1037, 2, 1, "", "open"], [1037, 2, 1, "", "open_tgz"]], "pypath.share.curl.RemoteFile": [[1038, 2, 1, "", "__init__"]], "pypath.share.curl.cache_delete_off": [[1039, 2, 1, "", "__init__"]], "pypath.share.curl.cache_delete_on": [[1040, 2, 1, "", "__init__"]], "pypath.share.curl.cache_off": [[1041, 2, 1, "", "__init__"]], "pypath.share.curl.cache_on": [[1042, 2, 1, "", "__init__"]], "pypath.share.curl.cache_print_off": [[1043, 2, 1, "", "__init__"]], "pypath.share.curl.cache_print_on": [[1044, 2, 1, "", "__init__"]], "pypath.share.curl.debug_off": [[1045, 2, 1, "", "__init__"]], "pypath.share.curl.debug_on": [[1046, 2, 1, "", "__init__"]], "pypath.share.curl.dryrun_off": [[1047, 2, 1, "", "__init__"]], "pypath.share.curl.dryrun_on": [[1048, 2, 1, "", "__init__"]], "pypath.share.curl.preserve_off": [[1050, 2, 1, "", "__init__"]], "pypath.share.curl.preserve_on": [[1051, 2, 1, "", "__init__"]], "pypath.share.progress": [[1053, 1, 1, "", "Progress"]], "pypath.share.progress.Progress": [[1053, 2, 1, "", "__init__"], [1053, 2, 1, "", "get_desc"], [1053, 2, 1, "", "init_tqdm"], [1053, 2, 1, "", "set_done"], [1053, 2, 1, "", "set_status"], [1053, 2, 1, "", "set_total"], [1053, 2, 1, "", "step"], [1053, 2, 1, "", "terminate"]], "pypath.utils": [[1057, 0, 0, "-", "go"], [1065, 0, 0, "-", "mapping"], [1084, 0, 0, "-", "metabo"], [1085, 0, 0, "-", "orthology"], [1106, 0, 0, "-", "pdb"], [1111, 0, 0, "-", "proteomicsdb"], [1113, 0, 0, "-", "pyreact"], [1128, 0, 0, "-", "reflists"], [1136, 0, 0, "-", "residues"], [1138, 0, 0, "-", "seq"], [1145, 0, 0, "-", "taxonomy"], [1160, 0, 0, "-", "unichem"], [1162, 0, 0, "-", "uniprot"]], "pypath.utils.go": [[1058, 1, 1, "", "GOAnnotation"], [1059, 1, 1, "", "GOCustomAnnotation"], [1060, 1, 1, "", "GeneOntology"], [1061, 3, 1, "", "annotate"], [1062, 3, 1, "", "get_db"], [1063, 3, 1, "", "init_db"], [1064, 3, 1, "", "load_go"]], "pypath.utils.go.GOAnnotation": [[1058, 2, 1, "", "__init__"], [1058, 2, 1, "", "all_uniprots"], [1058, 2, 1, "", "expr_names_to_terms"], [1058, 2, 1, "", "get_annot"], [1058, 2, 1, "", "get_annot_ancestors"], [1058, 2, 1, "", "get_annots"], [1058, 2, 1, "", "get_annots_ancestors"], [1058, 2, 1, "", "get_name"], [1058, 2, 1, "", "get_term"], [1058, 2, 1, "", "has_any_term"], [1058, 2, 1, "", "has_term"], [1058, 2, 1, "", "i_select_by_term"], [1058, 2, 1, "", "reload"], [1058, 2, 1, "", "select"], [1058, 2, 1, "", "select_by_all"], [1058, 2, 1, "", "select_by_expr"], [1058, 2, 1, "", "select_by_expr_terms"], [1058, 2, 1, "", "select_by_name"], [1058, 2, 1, "", "select_by_term"]], "pypath.utils.go.GOCustomAnnotation": [[1059, 2, 1, "", "__init__"], [1059, 2, 1, "", "get_annotation"], [1059, 2, 1, "", "get_annotations"], [1059, 2, 1, "", "process_categories"], [1059, 2, 1, "", "reload"]], "pypath.utils.go.GeneOntology": [[1060, 2, 1, "", "__init__"], [1060, 2, 1, "", "all_from_aspect"], [1060, 2, 1, "", "aspect_from_name"], [1060, 2, 1, "", "flatten"], [1060, 2, 1, "", "get_all_ancestors"], [1060, 2, 1, "", "get_all_descendants"], [1060, 2, 1, "", "get_aspect"], [1060, 2, 1, "", "get_name"], [1060, 2, 1, "", "get_term"], [1060, 2, 1, "", "highest"], [1060, 2, 1, "", "is_leaf"], [1060, 2, 1, "", "is_name"], [1060, 2, 1, "", "is_root"], [1060, 2, 1, "", "is_term"], [1060, 2, 1, "", "lowest"], [1060, 2, 1, "", "names_to_terms"], [1060, 2, 1, "", "names_to_terms_aspects"], [1060, 2, 1, "", "reload"], [1060, 2, 1, "", "set_of"], [1060, 2, 1, "", "set_of_names"], [1060, 2, 1, "", "set_of_terms"], [1060, 2, 1, "", "subgraph_nodes"], [1060, 2, 1, "", "terms_to_names"], [1060, 2, 1, "", "terms_to_names_aspects"]], "pypath.utils.mapping": [[1066, 1, 1, "", "MapReader"], [1067, 1, 1, "", "Mapper"], [1068, 1, 1, "", "MappingTable"], [1069, 1, 1, "", "MappingTableKey"], [1070, 6, 1, "", "UNIPROT_ID_TYPES"], [1071, 3, 1, "", "get_mapper"], [1072, 3, 1, "", "guess_type"], [1073, 3, 1, "", "id_from_label"], [1074, 3, 1, "", "id_from_label0"], [1075, 3, 1, "", "id_types"], [1076, 3, 1, "", "init"], [1077, 3, 1, "", "label"], [1078, 3, 1, "", "map_name"], [1079, 3, 1, "", "map_name0"], [1080, 3, 1, "", "map_names"], [1081, 3, 1, "", "mapping_tables"], [1082, 3, 1, "", "translation_df"], [1083, 3, 1, "", "translation_dict"]], "pypath.utils.mapping.MapReader": [[1066, 2, 1, "", "__init__"], [1066, 2, 1, "", "id_type_side"], [1066, 2, 1, "", "load"], [1066, 5, 1, "", "mapping_table_a_to_b"], [1066, 5, 1, "", "mapping_table_b_to_a"], [1066, 2, 1, "", "read"], [1066, 2, 1, "", "read_cache"], [1066, 2, 1, "", "read_mapping_array"], [1066, 2, 1, "", "read_mapping_biomart"], [1066, 2, 1, "", "read_mapping_file"], [1066, 2, 1, "", "read_mapping_hmdb"], [1066, 2, 1, "", "read_mapping_ramp"], [1066, 2, 1, "", "read_mapping_unichem"], [1066, 2, 1, "", "read_mapping_uniprot"], [1066, 2, 1, "", "read_mapping_uniprot_list"], [1066, 2, 1, "", "resource_id_type"], [1066, 2, 1, "", "set_uniprot_space"], [1066, 2, 1, "", "setup_cache"], [1066, 2, 1, "", "tables_loaded"], [1066, 2, 1, "", "write_cache"]], "pypath.utils.mapping.Mapper": [[1067, 2, 1, "", "__init__"], [1067, 2, 1, "", "chain_map"], [1067, 2, 1, "", "create_reverse"], [1067, 2, 1, "", "get_table_key"], [1067, 2, 1, "", "guess_type"], [1067, 2, 1, "", "has_mapping_table"], [1067, 2, 1, "", "id_types"], [1067, 2, 1, "", "identifier"], [1067, 2, 1, "", "label"], [1067, 2, 1, "", "load_genesymbol5"], [1067, 2, 1, "", "load_mapping"], [1067, 2, 1, "", "load_uniprot_static"], [1067, 2, 1, "", "map_name"], [1067, 2, 1, "", "map_name0"], [1067, 2, 1, "", "map_names"], [1067, 2, 1, "", "mapping_tables"], [1067, 2, 1, "", "only_uniprot_ac"], [1067, 2, 1, "", "other_organism_uniprot"], [1067, 2, 1, "", "primary_uniprot"], [1067, 2, 1, "", "reload"], [1067, 2, 1, "", "remove_expired"], [1067, 2, 1, "", "remove_key"], [1067, 2, 1, "", "remove_table"], [1067, 2, 1, "", "reverse_key"], [1067, 2, 1, "", "reverse_mapping"], [1067, 2, 1, "", "swissprots"], [1067, 2, 1, "", "translate_deleted_uniprot_by_genesymbol"], [1067, 2, 1, "", "translation_df"], [1067, 2, 1, "", "translation_dict"], [1067, 2, 1, "", "trembl_swissprot"], [1067, 2, 1, "", "uniprot_cleanup"], [1067, 2, 1, "", "valid_uniprot"], [1067, 2, 1, "", "which_table"]], "pypath.utils.mapping.MappingTable": [[1068, 2, 1, "", "__init__"], [1068, 2, 1, "", "get_key"]], "pypath.utils.mapping.MappingTableKey": [[1069, 2, 1, "", "__init__"], [1069, 2, 1, "", "count"], [1069, 4, 1, "", "id_type"], [1069, 2, 1, "", "index"], [1069, 4, 1, "", "ncbi_tax_id"], [1069, 4, 1, "", "target_id_type"]], "pypath.utils.orthology": [[1086, 1, 1, "", "EnsemblOrtholog"], [1087, 1, 1, "", "EnsemblOrthology"], [1088, 1, 1, "", "HomologeneOrtholog"], [1089, 1, 1, "", "HomologeneOrthology"], [1090, 1, 1, "", "OmaOrtholog"], [1091, 1, 1, "", "OmaOrthology"], [1092, 1, 1, "", "OrthologBase"], [1093, 1, 1, "", "OrthologMeta"], [1094, 1, 1, "", "OrthologyManager"], [1095, 1, 1, "", "OrthologyTableKey"], [1096, 1, 1, "", "ProteinOrthology"], [1097, 1, 1, "", "Proteomes"], [1098, 1, 1, "", "PtmOrthology"], [1099, 1, 1, "", "SequenceContainer"], [1100, 3, 1, "", "get_df"], [1101, 3, 1, "", "get_dict"], [1102, 3, 1, "", "get_manager"], [1103, 3, 1, "", "init"], [1104, 3, 1, "", "translate"], [1105, 3, 1, "", "translate_df"]], "pypath.utils.orthology.EnsemblOrtholog": [[1086, 2, 1, "", "__init__"], [1086, 2, 1, "", "count"], [1086, 4, 1, "", "hc"], [1086, 4, 1, "", "id"], [1086, 2, 1, "", "index"], [1086, 4, 1, "", "types"]], "pypath.utils.orthology.EnsemblOrthology": [[1087, 2, 1, "", "__init__"], [1087, 2, 1, "", "asdict"], [1087, 2, 1, "", "df"], [1087, 2, 1, "", "match"], [1087, 2, 1, "", "translate"], [1087, 2, 1, "", "translate_df"]], "pypath.utils.orthology.HomologeneOrtholog": [[1088, 2, 1, "", "__init__"], [1088, 2, 1, "", "count"], [1088, 4, 1, "", "id"], [1088, 2, 1, "", "index"]], "pypath.utils.orthology.HomologeneOrthology": [[1089, 2, 1, "", "__init__"], [1089, 2, 1, "", "asdict"], [1089, 2, 1, "", "df"], [1089, 2, 1, "", "load"], [1089, 2, 1, "", "translate"], [1089, 2, 1, "", "translate_df"]], "pypath.utils.orthology.OmaOrtholog": [[1090, 2, 1, "", "__init__"], [1090, 2, 1, "", "count"], [1090, 4, 1, "", "id"], [1090, 2, 1, "", "index"], [1090, 4, 1, "", "rel_type"], [1090, 4, 1, "", "score"]], "pypath.utils.orthology.OmaOrthology": [[1091, 2, 1, "", "__init__"], [1091, 2, 1, "", "asdict"], [1091, 2, 1, "", "df"], [1091, 2, 1, "", "match"], [1091, 2, 1, "", "translate"], [1091, 2, 1, "", "translate_df"]], "pypath.utils.orthology.OrthologBase": [[1092, 2, 1, "", "__init__"]], "pypath.utils.orthology.OrthologMeta": [[1093, 2, 1, "", "__init__"], [1093, 2, 1, "", "mro"], [1093, 2, 1, "", "register"]], "pypath.utils.orthology.OrthologyManager": [[1094, 2, 1, "", "__init__"], [1094, 2, 1, "", "get_df"], [1094, 2, 1, "", "get_dict"], [1094, 2, 1, "", "translate"], [1094, 2, 1, "", "translate_df"]], "pypath.utils.orthology.OrthologyTableKey": [[1095, 2, 1, "", "__init__"], [1095, 2, 1, "", "count"], [1095, 4, 1, "", "id_type"], [1095, 2, 1, "", "index"], [1095, 4, 1, "", "only_swissprot"], [1095, 4, 1, "", "resource"], [1095, 4, 1, "", "source"], [1095, 4, 1, "", "target"]], "pypath.utils.orthology.ProteinOrthology": [[1096, 2, 1, "", "__init__"], [1096, 2, 1, "", "asdict"], [1096, 2, 1, "", "df"], [1096, 2, 1, "", "translate"], [1096, 2, 1, "", "translate_df"]], "pypath.utils.orthology.Proteomes": [[1097, 2, 1, "", "__init__"]], "pypath.utils.orthology.PtmOrthology": [[1098, 2, 1, "", "__init__"], [1098, 2, 1, "", "ptm_orthology"], [1098, 2, 1, "", "translate"], [1098, 2, 1, "", "translate_site"]], "pypath.utils.orthology.SequenceContainer": [[1099, 2, 1, "", "__init__"]], "pypath.utils.pdb": [[1107, 1, 1, "", "Residue"], [1108, 1, 1, "", "ResidueMapper"], [1109, 1, 1, "", "Segment"], [1110, 3, 1, "", "residue_pdb"]], "pypath.utils.pdb.Residue": [[1107, 2, 1, "", "__init__"], [1107, 4, 1, "", "chain"], [1107, 2, 1, "", "count"], [1107, 2, 1, "", "index"], [1107, 4, 1, "", "offset"], [1107, 4, 1, "", "resnum"], [1107, 4, 1, "", "uniprot"]], "pypath.utils.pdb.ResidueMapper": [[1108, 2, 1, "", "__init__"], [1108, 2, 1, "", "clean"], [1108, 2, 1, "", "get_residue"], [1108, 2, 1, "", "load_mapping"]], "pypath.utils.pdb.Segment": [[1109, 2, 1, "", "__init__"], [1109, 2, 1, "", "count"], [1109, 2, 1, "", "index"], [1109, 4, 1, "", "pdb_end"], [1109, 4, 1, "", "pdb_start"], [1109, 4, 1, "", "uniprot"], [1109, 4, 1, "", "uniprot_end"], [1109, 4, 1, "", "uniprot_start"]], "pypath.utils.proteomicsdb": [[1112, 1, 1, "", "ProteomicsDB"]], "pypath.utils.proteomicsdb.ProteomicsDB": [[1112, 2, 1, "", "__init__"], [1112, 2, 1, "", "get_expression"], [1112, 2, 1, "", "get_pieces"], [1112, 2, 1, "", "get_proteins"], [1112, 2, 1, "", "get_tissues"], [1112, 2, 1, "", "pandas_matrix"], [1112, 2, 1, "", "query"], [1112, 2, 1, "", "tissues_x_proteins"]], "pypath.utils.pyreact": [[1114, 1, 1, "", "AttributeHandler"], [1115, 1, 1, "", "BioPaxReader"], [1116, 1, 1, "", "Complex"], [1117, 1, 1, "", "ComplexVariations"], [1118, 1, 1, "", "Control"], [1119, 1, 1, "", "Entity"], [1120, 1, 1, "", "EntitySet"], [1121, 1, 1, "", "Intersecting"], [1122, 1, 1, "", "Protein"], [1123, 1, 1, "", "ProteinFamily"], [1124, 1, 1, "", "PyReact"], [1125, 1, 1, "", "Reaction"], [1126, 1, 1, "", "ReactionSide"], [1127, 1, 1, "", "Reference"]], "pypath.utils.pyreact.AttributeHandler": [[1114, 2, 1, "", "__init__"]], "pypath.utils.pyreact.BioPaxReader": [[1115, 2, 1, "", "__init__"], [1115, 2, 1, "", "biopax_size"], [1115, 2, 1, "", "cleanup_hook"], [1115, 2, 1, "", "close_biopax"], [1115, 2, 1, "", "extract"], [1115, 2, 1, "", "init_etree"], [1115, 2, 1, "", "iterate"], [1115, 2, 1, "", "open_biopax"], [1115, 2, 1, "", "process"], [1115, 2, 1, "", "set_progress"]], "pypath.utils.pyreact.Complex": [[1116, 2, 1, "", "__init__"]], "pypath.utils.pyreact.ComplexVariations": [[1117, 2, 1, "", "__init__"], [1117, 2, 1, "", "itermembers"]], "pypath.utils.pyreact.Control": [[1118, 2, 1, "", "__init__"]], "pypath.utils.pyreact.Entity": [[1119, 2, 1, "", "__init__"], [1119, 2, 1, "", "expand"]], "pypath.utils.pyreact.EntitySet": [[1120, 2, 1, "", "__init__"]], "pypath.utils.pyreact.Intersecting": [[1121, 2, 1, "", "__init__"]], "pypath.utils.pyreact.Protein": [[1122, 2, 1, "", "__init__"], [1122, 2, 1, "", "expand"]], "pypath.utils.pyreact.ProteinFamily": [[1123, 2, 1, "", "__init__"]], "pypath.utils.pyreact.PyReact": [[1124, 2, 1, "", "__init__"], [1124, 2, 1, "", "gen_cvariations"], [1124, 2, 1, "", "in_same_component"], [1124, 2, 1, "", "merge_complexes"], [1124, 2, 1, "", "merge_cvariations"]], "pypath.utils.pyreact.Reaction": [[1125, 2, 1, "", "__init__"]], "pypath.utils.pyreact.ReactionSide": [[1126, 2, 1, "", "__init__"], [1126, 2, 1, "", "expand"]], "pypath.utils.pyreact.Reference": [[1127, 2, 1, "", "__init__"], [1127, 2, 1, "", "expand"]], "pypath.utils.reflists": [[1129, 1, 1, "", "ReferenceListManager"], [1130, 3, 1, "", "check"], [1131, 3, 1, "", "get_manager"], [1132, 3, 1, "", "get_reflist"], [1133, 3, 1, "", "init"], [1134, 3, 1, "", "is_not"], [1135, 3, 1, "", "select"]], "pypath.utils.reflists.ReferenceListManager": [[1129, 2, 1, "", "__init__"], [1129, 2, 1, "", "check"], [1129, 2, 1, "", "is_not"], [1129, 2, 1, "", "select"]], "pypath.utils.residues": [[1137, 1, 1, "", "ResidueMapper"]], "pypath.utils.residues.ResidueMapper": [[1137, 2, 1, "", "__init__"], [1137, 2, 1, "", "clean"]], "pypath.utils.seq": [[1139, 1, 1, "", "Pfam"], [1140, 1, 1, "", "Resource"], [1141, 1, 1, "", "Seq"], [1142, 3, 1, "", "get_isoforms"], [1143, 3, 1, "", "read_fasta"], [1144, 3, 1, "", "swissprot_seq"]], "pypath.utils.seq.Pfam": [[1139, 2, 1, "", "__init__"], [1139, 2, 1, "", "iterdb"], [1139, 2, 1, "", "iterprotein"], [1139, 2, 1, "", "load"], [1139, 2, 1, "", "processor"], [1139, 2, 1, "", "unload"]], "pypath.utils.seq.Resource": [[1140, 2, 1, "", "__init__"], [1140, 2, 1, "", "iterdb"], [1140, 2, 1, "", "iterprotein"], [1140, 2, 1, "", "load"], [1140, 2, 1, "", "processor"], [1140, 2, 1, "", "unload"]], "pypath.utils.seq.Seq": [[1141, 2, 1, "", "__init__"], [1141, 2, 1, "", "findall"]], "pypath.utils.taxonomy": [[1146, 3, 1, "", "ensure_common_name"], [1147, 3, 1, "", "ensure_ensembl_name"], [1148, 3, 1, "", "ensure_latin_name"], [1149, 3, 1, "", "ensure_ncbi_tax_id"], [1150, 3, 1, "", "get_db"], [1151, 3, 1, "", "init_db"], [1152, 3, 1, "", "short_latin_names"], [1153, 3, 1, "", "shorten_latin_name"], [1154, 3, 1, "", "taxid_from_common_name"], [1155, 3, 1, "", "taxid_from_dbptm_taxon_name"], [1156, 3, 1, "", "taxid_from_ensembl_name"], [1157, 3, 1, "", "taxid_from_latin_name"], [1158, 3, 1, "", "taxid_from_nonstandard"], [1159, 3, 1, "", "uniprot_taxid"]], "pypath.utils.unichem": [[1161, 1, 1, "", "Unichem"]], "pypath.utils.unichem.Unichem": [[1161, 2, 1, "", "__init__"], [1161, 2, 1, "", "connectivity_search"], [1161, 2, 1, "", "inchikey2anything"], [1161, 2, 1, "", "info"], [1161, 2, 1, "", "smiles2chembl"], [1161, 2, 1, "", "translate"], [1161, 2, 1, "", "usage"]], "pypath.utils.uniprot": [[1163, 1, 1, "", "UniprotProtein"], [1164, 3, 1, "", "ac"], [1165, 3, 1, "", "activity_regulation"], [1166, 3, 1, "", "activity_regulation_with_xrefs"], [1167, 3, 1, "", "alternative_products"], [1168, 3, 1, "", "alternative_products_with_xrefs"], [1169, 3, 1, "", "browse"], [1170, 3, 1, "", "catalytic_activity"], [1171, 3, 1, "", "catalytic_activity_with_xrefs"], [1172, 3, 1, "", "collect"], [1173, 3, 1, "", "databases"], [1174, 3, 1, "", "disease"], [1175, 3, 1, "", "disease_with_xrefs"], [1176, 3, 1, "", "ec"], [1177, 3, 1, "", "features_table"], [1178, 3, 1, "", "full_name"], [1179, 3, 1, "", "function"], [1180, 3, 1, "", "function_genecards"], [1181, 3, 1, "", "function_or_genecards"], [1182, 3, 1, "", "function_with_genecards"], [1183, 3, 1, "", "function_with_xrefs"], [1184, 3, 1, "", "genesymbol"], [1185, 3, 1, "", "has_tag"], [1186, 3, 1, "", "id"], [1187, 3, 1, "", "info"], [1188, 3, 1, "", "info_section"], [1189, 3, 1, "", "interaction"], [1190, 3, 1, "", "interaction_with_xrefs"], [1191, 3, 1, "", "is_reviewed"], [1192, 3, 1, "", "itertag"], [1193, 3, 1, "", "keywords"], [1194, 3, 1, "", "keywords_with_xrefs"], [1195, 3, 1, "", "length"], [1196, 3, 1, "", "lengths"], [1197, 3, 1, "", "load"], [1198, 3, 1, "", "organism"], [1199, 3, 1, "", "print_features"], [1200, 3, 1, "", "ptm"], [1201, 3, 1, "", "ptm_with_xrefs"], [1202, 3, 1, "", "query"], [1203, 3, 1, "", "reload"], [1204, 3, 1, "", "remove_xrefs"], [1205, 3, 1, "", "sequence"], [1206, 3, 1, "", "sequence_caution"], [1207, 3, 1, "", "sequence_caution_with_xrefs"], [1208, 3, 1, "", "similarity"], [1209, 3, 1, "", "similarity_with_xrefs"], [1210, 3, 1, "", "subcellular_location"], [1211, 3, 1, "", "subcellular_location_with_xrefs"], [1212, 3, 1, "", "subunit"], [1213, 3, 1, "", "subunit_with_xrefs"], [1214, 3, 1, "", "tissue_specificity"], [1215, 3, 1, "", "tissue_specificity_with_xrefs"], [1216, 3, 1, "", "update_databases"], [1217, 3, 1, "", "update_info"], [1218, 3, 1, "", "web_resource"], [1219, 3, 1, "", "web_resource_with_xrefs"], [1220, 3, 1, "", "weight"], [1221, 3, 1, "", "weights"]], "pypath.utils.uniprot.UniprotProtein": [[1163, 2, 1, "", "__init__"], [1163, 5, 1, "", "databases"], [1163, 2, 1, "", "info_section"], [1163, 5, 1, "", "keywords"], [1163, 5, 1, "", "keywords_with_xrefs"], [1163, 5, 1, "", "length"], [1163, 5, 1, "", "lengths"], [1163, 5, 1, "", "sequence"], [1163, 5, 1, "", "weight"], [1163, 5, 1, "", "weights"]], "pypath.visual": [[1223, 0, 0, "-", "drawing"], [1226, 0, 0, "-", "igraph_drawing"]], "pypath.visual.drawing": [[1224, 1, 1, "", "InterSet"], [1225, 1, 1, "", "Plot"]], "pypath.visual.drawing.InterSet": [[1224, 2, 1, "", "__init__"], [1224, 2, 1, "", "draw"]], "pypath.visual.drawing.Plot": [[1225, 2, 1, "", "__init__"]], "pypath.visual.igraph_drawing": [[1227, 1, 1, "", "AbstractCairoGraphDrawer"], [1228, 4, 1, "", "ArrowEdgeDrawer"], [1229, 1, 1, "", "DefaultGraphDrawerFFsupport"], [1230, 4, 1, "", "DefaultVertexDrawer"], [1231, 4, 1, "", "TextDrawer"], [1232, 0, 0, "-", "edge"], [1239, 0, 0, "-", "vertex"]], "pypath.visual.igraph_drawing.AbstractCairoGraphDrawer": [[1227, 2, 1, "", "__init__"]], "pypath.visual.igraph_drawing.DefaultGraphDrawerFFsupport": [[1229, 2, 1, "", "__init__"]], "pypath.visual.igraph_drawing.edge": [[1233, 1, 1, "", "AbstractEdgeDrawer"], [1234, 1, 1, "", "AlphaVaryingEdgeDrawer"], [1235, 1, 1, "", "ArrowEdgeDrawer"], [1236, 1, 1, "", "DarkToLightEdgeDrawer"], [1237, 1, 1, "", "LightToDarkEdgeDrawer"], [1238, 1, 1, "", "TaperedEdgeDrawer"]], "pypath.visual.igraph_drawing.edge.AbstractEdgeDrawer": [[1233, 2, 1, "", "__init__"], [1233, 2, 1, "", "draw_directed_edge"], [1233, 2, 1, "", "draw_loop_edge"], [1233, 2, 1, "", "draw_undirected_edge"], [1233, 2, 1, "", "get_label_position"]], "pypath.visual.igraph_drawing.edge.AlphaVaryingEdgeDrawer": [[1234, 2, 1, "", "__init__"], [1234, 2, 1, "", "draw_directed_edge"], [1234, 2, 1, "", "draw_loop_edge"], [1234, 2, 1, "", "draw_undirected_edge"], [1234, 2, 1, "", "get_label_position"]], "pypath.visual.igraph_drawing.edge.ArrowEdgeDrawer": [[1235, 2, 1, "", "__init__"], [1235, 2, 1, "", "draw_directed_edge"], [1235, 2, 1, "", "draw_loop_edge"], [1235, 2, 1, "", "draw_undirected_edge"], [1235, 2, 1, "", "get_label_position"]], "pypath.visual.igraph_drawing.edge.DarkToLightEdgeDrawer": [[1236, 2, 1, "", "__init__"], [1236, 2, 1, "", "draw_directed_edge"], [1236, 2, 1, "", "draw_loop_edge"], [1236, 2, 1, "", "draw_undirected_edge"], [1236, 2, 1, "", "get_label_position"]], "pypath.visual.igraph_drawing.edge.LightToDarkEdgeDrawer": [[1237, 2, 1, "", "__init__"], [1237, 2, 1, "", "draw_directed_edge"], [1237, 2, 1, "", "draw_loop_edge"], [1237, 2, 1, "", "draw_undirected_edge"], [1237, 2, 1, "", "get_label_position"]], "pypath.visual.igraph_drawing.edge.TaperedEdgeDrawer": [[1238, 2, 1, "", "__init__"], [1238, 2, 1, "", "draw_directed_edge"], [1238, 2, 1, "", "draw_loop_edge"], [1238, 2, 1, "", "draw_undirected_edge"], [1238, 2, 1, "", "get_label_position"]], "pypath.visual.igraph_drawing.vertex": [[1240, 1, 1, "", "AbstractCairoDrawer"], [1241, 1, 1, "", "AbstractCairoVertexDrawer"], [1242, 1, 1, "", "AbstractDrawer"], [1243, 1, 1, "", "AbstractVertexDrawer"], [1244, 1, 1, "", "DefaultVertexDrawer"]], "pypath.visual.igraph_drawing.vertex.AbstractCairoDrawer": [[1240, 2, 1, "", "__init__"]], "pypath.visual.igraph_drawing.vertex.AbstractCairoVertexDrawer": [[1241, 2, 1, "", "__init__"], [1241, 2, 1, "", "draw"]], "pypath.visual.igraph_drawing.vertex.AbstractDrawer": [[1242, 2, 1, "", "__init__"]], "pypath.visual.igraph_drawing.vertex.AbstractVertexDrawer": [[1243, 2, 1, "", "__init__"], [1243, 2, 1, "", "draw"]], "pypath.visual.igraph_drawing.vertex.DefaultVertexDrawer": [[1244, 2, 1, "", "__init__"], [1244, 2, 1, "", "draw"]]}, "objtypes": {"0": "py:module", "1": "py:class", "2": "py:method", "3": "py:function", "4": "py:attribute", "5": "py:property", "6": "py:data"}, "objnames": {"0": ["py", "module", "Python module"], "1": ["py", "class", "Python class"], "2": ["py", "method", "Python method"], "3": ["py", "function", "Python function"], "4": ["py", "attribute", "Python attribute"], "5": ["py", "property", "Python property"], "6": ["py", "data", "Python data"]}, "titleterms": {"pypath": [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142, 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, 153, 154, 155, 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, 168, 169, 170, 171, 172, 173, 174, 175, 176, 177, 178, 179, 180, 181, 182, 183, 184, 185, 186, 187, 188, 189, 190, 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207, 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220, 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233, 234, 235, 236, 237, 238, 239, 240, 241, 242, 243, 244, 245, 246, 247, 248, 249, 250, 251, 252, 253, 254, 255, 256, 257, 258, 259, 260, 261, 262, 263, 264, 265, 266, 267, 268, 269, 270, 271, 272, 273, 274, 275, 276, 277, 278, 279, 280, 281, 282, 283, 284, 285, 286, 287, 288, 289, 290, 291, 292, 293, 294, 295, 296, 297, 298, 299, 300, 301, 302, 303, 304, 305, 306, 307, 308, 309, 310, 311, 312, 313, 314, 315, 316, 317, 318, 319, 320, 321, 322, 323, 324, 325, 326, 327, 328, 329, 330, 331, 332, 333, 334, 335, 336, 337, 338, 339, 340, 341, 342, 343, 344, 345, 346, 347, 348, 349, 350, 351, 352, 353, 354, 355, 356, 357, 358, 359, 360, 361, 362, 363, 364, 365, 366, 367, 368, 369, 370, 371, 372, 373, 374, 375, 376, 377, 378, 379, 380, 381, 382, 383, 384, 385, 386, 387, 388, 389, 390, 391, 392, 393, 394, 395, 396, 397, 398, 399, 400, 401, 402, 403, 404, 405, 406, 407, 408, 409, 410, 411, 412, 413, 414, 415, 416, 417, 418, 419, 420, 421, 422, 423, 424, 425, 426, 427, 428, 429, 430, 431, 432, 433, 434, 435, 436, 437, 438, 439, 440, 441, 442, 443, 444, 445, 446, 447, 448, 449, 450, 451, 452, 453, 454, 455, 456, 457, 458, 459, 460, 461, 462, 463, 464, 465, 466, 467, 468, 469, 470, 471, 472, 473, 474, 475, 476, 477, 478, 479, 480, 481, 482, 483, 484, 485, 486, 487, 488, 489, 490, 491, 492, 493, 494, 495, 496, 497, 498, 499, 500, 501, 502, 503, 504, 505, 506, 507, 508, 509, 510, 511, 512, 513, 514, 515, 516, 517, 518, 519, 520, 521, 522, 523, 524, 525, 526, 527, 528, 529, 530, 531, 532, 533, 534, 535, 536, 537, 538, 539, 540, 541, 542, 543, 544, 545, 546, 547, 548, 549, 550, 551, 552, 553, 554, 555, 556, 557, 558, 559, 560, 561, 562, 563, 564, 565, 566, 567, 568, 569, 570, 571, 572, 573, 574, 575, 576, 577, 578, 579, 580, 581, 582, 583, 584, 585, 586, 587, 588, 589, 590, 591, 592, 593, 594, 595, 596, 597, 598, 599, 600, 601, 602, 603, 604, 605, 606, 607, 608, 609, 610, 611, 612, 613, 614, 615, 616, 617, 618, 619, 620, 621, 622, 623, 624, 625, 626, 627, 628, 629, 630, 631, 632, 633, 634, 635, 636, 637, 638, 639, 640, 641, 642, 643, 644, 645, 646, 647, 648, 649, 650, 651, 652, 653, 654, 655, 656, 657, 658, 659, 660, 661, 662, 663, 664, 665, 666, 667, 668, 669, 670, 671, 672, 673, 674, 675, 676, 677, 678, 679, 680, 681, 682, 683, 684, 685, 686, 687, 688, 689, 690, 691, 692, 693, 694, 695, 696, 697, 698, 699, 700, 701, 702, 703, 704, 705, 706, 707, 708, 709, 710, 711, 712, 713, 714, 715, 716, 717, 718, 719, 720, 721, 722, 723, 724, 725, 726, 727, 728, 729, 730, 731, 732, 733, 734, 735, 736, 737, 738, 739, 740, 741, 742, 743, 744, 745, 746, 747, 748, 749, 750, 751, 752, 753, 754, 755, 756, 757, 758, 759, 760, 761, 762, 763, 764, 765, 766, 767, 768, 769, 770, 771, 772, 773, 774, 775, 776, 777, 778, 779, 780, 781, 782, 783, 784, 785, 786, 787, 788, 789, 790, 791, 792, 793, 794, 795, 796, 797, 798, 799, 800, 801, 802, 803, 804, 805, 806, 807, 808, 809, 810, 811, 812, 813, 814, 815, 816, 817, 818, 819, 820, 821, 822, 823, 824, 825, 826, 827, 828, 829, 830, 831, 832, 833, 834, 835, 836, 837, 838, 839, 840, 841, 842, 843, 844, 845, 846, 847, 848, 849, 850, 851, 852, 853, 854, 855, 856, 857, 858, 859, 860, 861, 862, 863, 864, 865, 866, 867, 868, 869, 870, 871, 872, 873, 874, 875, 876, 877, 878, 879, 880, 881, 882, 883, 884, 885, 886, 887, 888, 889, 890, 891, 892, 893, 894, 895, 896, 897, 898, 899, 900, 901, 902, 903, 904, 905, 906, 907, 908, 909, 910, 911, 912, 913, 914, 915, 916, 917, 918, 919, 920, 921, 922, 923, 924, 925, 926, 927, 928, 929, 930, 931, 932, 933, 934, 935, 936, 937, 938, 939, 940, 941, 942, 943, 944, 945, 946, 947, 948, 949, 950, 951, 952, 953, 954, 955, 956, 957, 958, 959, 960, 961, 962, 963, 964, 965, 966, 967, 968, 969, 970, 971, 972, 973, 974, 975, 976, 977, 978, 979, 980, 981, 982, 983, 984, 985, 986, 987, 988, 989, 990, 991, 992, 993, 994, 995, 996, 997, 998, 999, 1000, 1001, 1002, 1003, 1004, 1005, 1006, 1007, 1008, 1009, 1010, 1011, 1012, 1013, 1014, 1015, 1016, 1017, 1018, 1019, 1020, 1021, 1022, 1023, 1024, 1025, 1026, 1027, 1028, 1029, 1030, 1031, 1032, 1033, 1034, 1035, 1036, 1037, 1038, 1039, 1040, 1041, 1042, 1043, 1044, 1045, 1046, 1047, 1048, 1049, 1050, 1051, 1052, 1053, 1054, 1055, 1056, 1057, 1058, 1059, 1060, 1061, 1062, 1063, 1064, 1065, 1066, 1067, 1068, 1069, 1070, 1071, 1072, 1073, 1074, 1075, 1076, 1077, 1078, 1079, 1080, 1081, 1082, 1083, 1084, 1085, 1086, 1087, 1088, 1089, 1090, 1091, 1092, 1093, 1094, 1095, 1096, 1097, 1098, 1099, 1100, 1101, 1102, 1103, 1104, 1105, 1106, 1107, 1108, 1109, 1110, 1111, 1112, 1113, 1114, 1115, 1116, 1117, 1118, 1119, 1120, 1121, 1122, 1123, 1124, 1125, 1126, 1127, 1128, 1129, 1130, 1131, 1132, 1133, 1134, 1135, 1136, 1137, 1138, 1139, 1140, 1141, 1142, 1143, 1144, 1145, 1146, 1147, 1148, 1149, 1150, 1151, 1152, 1153, 1154, 1155, 1156, 1157, 1158, 1159, 1160, 1161, 1162, 1163, 1164, 1165, 1166, 1167, 1168, 1169, 1170, 1171, 1172, 1173, 1174, 1175, 1176, 1177, 1178, 1179, 1180, 1181, 1182, 1183, 1184, 1185, 1186, 1187, 1188, 1189, 1190, 1191, 1192, 1193, 1194, 1195, 1196, 1197, 1198, 1199, 1200, 1201, 1202, 1203, 1204, 1205, 1206, 1207, 1208, 1209, 1210, 1211, 1212, 1213, 1214, 1215, 1216, 1217, 1218, 1219, 1220, 1221, 1222, 1223, 1224, 1225, 1226, 1227, 1228, 1229, 1230, 1231, 1232, 1233, 1234, 1235, 1236, 1237, 1238, 1239, 1240, 1241, 1242, 1243, 1244, 1246, 1247], "core": [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142, 143, 144, 145, 146, 147, 148, 149], "annot": [2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 1061, 1247, 1250], "adhesom": [3, 159, 160, 161], "almen2009": [4, 172, 173], "annotationbas": 5, "annotationt": 6, "baccin2019": [7, 174, 175, 176], "biogp": [8, 177, 178, 179, 180, 181, 182], "cancergenecensu": 9, "cancerdrugsdb": [10, 202, 203, 204, 205], "cancersea": [11, 206, 207], "cellphonedb": [12, 101, 235, 236, 237, 238, 239, 240, 241, 1247], "cellphonedbcomplex": 13, "cellsurfaceproteinatla": 14, "cellsurfaceproteinatlascelltyp": 15, "cellcal": [16, 210, 211, 212, 213, 214], "cellcellinteract": [17, 215, 216], "cellchatdb": [18, 102, 217, 218, 219, 220, 221, 222], "cellchatdbcomplex": 19, "cellink": [20, 103, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233, 234], "cellinkercomplex": 21, "celltalkdb": [22, 242, 243, 244, 245], "celltypist": [23, 246, 247], "comppi": [24, 276, 277, 278], "connectomedb": [25, 279, 280, 281], "corum": [26, 107, 282, 283], "corumfuncat": 27, "corumgo": 28, "cpad": [29, 286, 287, 288, 289], "customannot": 30, "cytosig": [31, 304, 305, 306], "dgidb": [32, 323, 324, 325, 326], "disgenet": 33, "embrac": [34, 374, 375, 376, 377, 378], "exocarta": [35, 385, 386, 387], "gocustomintercel": 36, "gointercel": 37, "gpcrdb": [38, 418, 419], "guidetopharmacologi": [39, 108], "hpo": [40, 476, 477, 478, 479, 480], "hgnc": [41, 434, 435], "hpmrcomplex": 42, "humanplasmamembranereceptom": 43, "humanproteinatla": 44, "humanproteinatlassecretom": 45, "humanproteinatlassubcellular": 46, "humancellmap": [47, 488, 489], "icellnet": [48, 113, 510, 511, 512, 513, 514], "icellnetcomplex": 49, "integrin": [50, 528, 529], "interpro": [51, 530, 531, 532, 533, 534], "intogen": [52, 535, 536], "italk": [53, 542, 543, 544, 545], "keggpathwai": [54, 550], "keggpathwayspc": 55, "kinasedotcom": [56, 576, 577], "kirouac2010": [57, 578, 579], "lambert2018": [58, 580, 581, 582], "ligandreceptor": 59, "locat": [60, 601, 602], "lrdb": [61, 603, 604, 605, 606], "matrisom": [62, 610, 611], "matrixdb": [63, 612, 613, 614, 615, 616, 617], "mcam": [64, 618, 619], "membranom": [65, 620, 621], "msigdb": [66, 647, 648, 649, 650], "netpathpathwai": 67, "opm": [68, 676, 677], "panglaodb": [69, 681, 682, 683], "phobiu": [70, 729, 730], "phosphatom": [71, 731, 732], "progeni": [72, 763, 764, 765], "ramilowski2015": [73, 786, 787, 788], "ramilowski2015loc": 74, "scconnect": [75, 822, 823, 824, 825], "scconnectcomplex": 76, "signalinkfunct": 77, "signalinkpathwai": 78, "signorpathwai": 79, "surfaceom": [80, 860, 861], "talklr": [81, 864, 865, 866, 867], "tcdb": [82, 868, 869, 870, 871], "tfcensu": [83, 872, 873], "topdb": [84, 885, 886], "uniprotfamili": 85, "uniprotkeyword": 86, "uniprotloc": 87, "uniprottissu": 88, "uniprottopologi": 89, "vesiclepedia": 90, "wang": [91, 943, 944, 945, 946, 947], "zhong2015": [92, 951, 952], "get_db": [93, 119, 129, 140, 148, 938, 1062, 1150], "init_db": [94, 120, 130, 141, 149, 939, 1063, 1151], "attr": [95, 96], "attributehandl": [96, 1114], "common": [97, 98, 262, 263, 264, 265, 266, 267, 268, 439, 440, 441, 442, 443, 455, 456, 1033, 1247], "filter_network_df": 98, "complex": [99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 974, 1116, 1247, 1250], "abstractcomplexresourc": 100, "compleat": [104, 271, 272, 273], "complexaggreg": 105, "complexport": [106, 274, 275], "havugimana": [109, 431, 432, 433], "hpmr": [110, 470, 471, 472, 473, 474, 475], "humap": [111, 490, 491, 492], "humap2": 112, "kegg": [114, 549, 550, 551, 552, 553, 554, 555, 556, 557, 558], "pdb": [115, 706, 707, 708, 709, 1106, 1107, 1108, 1109, 1110], "signor": [116, 842, 843, 844, 845, 846, 847, 848], "spike": [117, 849, 850, 851], "all_complex": 118, "entiti": [121, 122, 123, 124, 1119], "entitykei": 123, "entitylist": 124, "enz_sub": [125, 126, 127, 128, 129, 130], "enzymesubstrateaggreg": 126, "enzymesubstrateorthologyprocessor": 127, "enzymesubstrateprocessor": 128, "evid": [131, 132, 133], "interact": [134, 135, 136, 137, 1013, 1189, 1247, 1250], "interactiondataframerecord": 136, "interactionkei": 137, "intercel": [138, 139, 140, 141, 1247], "intercellannot": 139, "intercell_annot": [142, 143], "exclud": 143, "network": [144, 145, 146, 147, 148, 149, 1022, 1023, 1024, 1025, 1247, 1250], "networkentitycollect": 146, "networkstatsrecord": 147, "data": [150, 1009, 1247], "disclaim": 151, "info": [152, 903, 1187, 1247], "input": [153, 154, 155, 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, 168, 169, 170, 171, 172, 173, 174, 175, 176, 177, 178, 179, 180, 181, 182, 183, 184, 185, 186, 187, 188, 189, 190, 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207, 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220, 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233, 234, 235, 236, 237, 238, 239, 240, 241, 242, 243, 244, 245, 246, 247, 248, 249, 250, 251, 252, 253, 254, 255, 256, 257, 258, 259, 260, 261, 262, 263, 264, 265, 266, 267, 268, 269, 270, 271, 272, 273, 274, 275, 276, 277, 278, 279, 280, 281, 282, 283, 284, 285, 286, 287, 288, 289, 290, 291, 292, 293, 294, 295, 296, 297, 298, 299, 300, 301, 302, 303, 304, 305, 306, 307, 308, 309, 310, 311, 312, 313, 314, 315, 316, 317, 318, 319, 320, 321, 322, 323, 324, 325, 326, 327, 328, 329, 330, 331, 332, 333, 334, 335, 336, 337, 338, 339, 340, 341, 342, 343, 344, 345, 346, 347, 348, 349, 350, 351, 352, 353, 354, 355, 356, 357, 358, 359, 360, 361, 362, 363, 364, 365, 366, 367, 368, 369, 370, 371, 372, 373, 374, 375, 376, 377, 378, 379, 380, 381, 382, 383, 384, 385, 386, 387, 388, 389, 390, 391, 392, 393, 394, 395, 396, 397, 398, 399, 400, 401, 402, 403, 404, 405, 406, 407, 408, 409, 410, 411, 412, 413, 414, 415, 416, 417, 418, 419, 420, 421, 422, 423, 424, 425, 426, 427, 428, 429, 430, 431, 432, 433, 434, 435, 436, 437, 438, 439, 440, 441, 442, 443, 444, 445, 446, 447, 448, 449, 450, 451, 452, 453, 454, 455, 456, 457, 458, 459, 460, 461, 462, 463, 464, 465, 466, 467, 468, 469, 470, 471, 472, 473, 474, 475, 476, 477, 478, 479, 480, 481, 482, 483, 484, 485, 486, 487, 488, 489, 490, 491, 492, 493, 494, 495, 496, 497, 498, 499, 500, 501, 502, 503, 504, 505, 506, 507, 508, 509, 510, 511, 512, 513, 514, 515, 516, 517, 518, 519, 520, 521, 522, 523, 524, 525, 526, 527, 528, 529, 530, 531, 532, 533, 534, 535, 536, 537, 538, 539, 540, 541, 542, 543, 544, 545, 546, 547, 548, 549, 550, 551, 552, 553, 554, 555, 556, 557, 558, 559, 560, 561, 562, 563, 564, 565, 566, 567, 568, 569, 570, 571, 572, 573, 574, 575, 576, 577, 578, 579, 580, 581, 582, 583, 584, 585, 586, 587, 588, 589, 590, 591, 592, 593, 594, 595, 596, 597, 598, 599, 600, 601, 602, 603, 604, 605, 606, 607, 608, 609, 610, 611, 612, 613, 614, 615, 616, 617, 618, 619, 620, 621, 622, 623, 624, 625, 626, 627, 628, 629, 630, 631, 632, 633, 634, 635, 636, 637, 638, 639, 640, 641, 642, 643, 644, 645, 646, 647, 648, 649, 650, 651, 652, 653, 654, 655, 656, 657, 658, 659, 660, 661, 662, 663, 664, 665, 666, 667, 668, 669, 670, 671, 672, 673, 674, 675, 676, 677, 678, 679, 680, 681, 682, 683, 684, 685, 686, 687, 688, 689, 690, 691, 692, 693, 694, 695, 696, 697, 698, 699, 700, 701, 702, 703, 704, 705, 706, 707, 708, 709, 710, 711, 712, 713, 714, 715, 716, 717, 718, 719, 720, 721, 722, 723, 724, 725, 726, 727, 728, 729, 730, 731, 732, 733, 734, 735, 736, 737, 738, 739, 740, 741, 742, 743, 744, 745, 746, 747, 748, 749, 750, 751, 752, 753, 754, 755, 756, 757, 758, 759, 760, 761, 762, 763, 764, 765, 766, 767, 768, 769, 770, 771, 772, 773, 774, 775, 776, 777, 778, 779, 780, 781, 782, 783, 784, 785, 786, 787, 788, 789, 790, 791, 792, 793, 794, 795, 796, 797, 798, 799, 800, 801, 802, 803, 804, 805, 806, 807, 808, 809, 810, 811, 812, 813, 814, 815, 816, 817, 818, 819, 820, 821, 822, 823, 824, 825, 826, 827, 828, 829, 830, 831, 832, 833, 834, 835, 836, 837, 838, 839, 840, 841, 842, 843, 844, 845, 846, 847, 848, 849, 850, 851, 852, 853, 854, 855, 856, 857, 858, 859, 860, 861, 862, 863, 864, 865, 866, 867, 868, 869, 870, 871, 872, 873, 874, 875, 876, 877, 878, 879, 880, 881, 882, 883, 884, 885, 886, 887, 888, 889, 890, 891, 892, 893, 894, 895, 896, 897, 898, 899, 900, 901, 902, 903, 904, 905, 906, 907, 908, 909, 910, 911, 912, 913, 914, 915, 916, 917, 918, 919, 920, 921, 922, 923, 924, 925, 926, 927, 928, 929, 930, 931, 932, 933, 934, 935, 936, 937, 938, 939, 940, 941, 942, 943, 944, 945, 946, 947, 948, 949, 950, 951, 952, 1247], "ab": [154, 155], "abs_interact": 155, "acsn": [156, 157, 158], "acsn_interact": 157, "acsn_interactions_sif": 158, "adhesome_annot": 160, "adhesome_interact": 161, "adrec": [162, 163, 164, 165, 166, 167, 168, 169, 170, 171], "adrecsadr": 163, "adrecschildpar": 164, "adrecsdrug": 165, "adrecsdrugadr": 166, "adrecsterm": 167, "adrecs_adr_ontologi": 168, "adrecs_drug_adr": 169, "adrecs_drug_identifi": 170, "adrecs_hierarchi": 171, "almen2009_annot": 173, "baccin2019_annot": 175, "baccin2019_interact": 176, "biogpsdataset": 178, "biogps_annot": 179, "biogps_dataset": 180, "biogps_download": 181, "biogps_download_al": 182, "biogrid": [183, 184, 185], "biogrid_all_interact": 184, "biogrid_interact": 185, "biomart": [186, 187, 188, 189, 190, 191], "biomart_homologi": 187, "biomart_microarrai": [188, 190], "biomart_microarray_typ": 189, "biomart_queri": 191, "biomodel": [192, 193, 194, 195, 196, 197], "download_single_model": 193, "get_all_model": 194, "get_biomodel": 195, "get_biomodels_req": 196, "get_single_model": 197, "ca1": [198, 199], "ca1_interact": 199, "cancercellmap": [200, 201], "ccmap_interact": 201, "cancerdrugsdb_annot": 203, "cancerdrugsdb_download": 204, "cancerdrugsdb_interact": 205, "cancersea_annot": 207, "cell": [208, 209], "cell_supplementari": 209, "cellcall_annot": 211, "cellcall_download": 212, "cellcall_download_al": 213, "cellcall_interact": 214, "cellcellinteractions_annot": 216, "cellchatdb_annot": 218, "cellchatdb_cofactor": 219, "cellchatdb_complex": 220, "cellchatdb_download": 221, "cellchatdb_interact": 222, "cellinkerinteract": 224, "cellinker_annot": 225, "cellinker_complex_annot": 226, "cellinker_complex": 227, "cellinker_complexes_raw": 228, "cellinker_lr_interact": 229, "cellinker_lr_interactions_raw": 230, "cellinker_protein_annot": 231, "cellinker_smol_interact": 232, "cellinker_smol_interactions_raw": 233, "components_to_complex": 234, "cellphonedbannot": 236, "cellphonedb_complex_annot": 237, "cellphonedb_complex": 238, "cellphonedb_interact": 239, "cellphonedb_ligands_receptor": 240, "cellphonedb_protein_annot": 241, "celltalkdb_annot": 243, "celltalkdb_download": 244, "celltalkdb_interact": 245, "celltypist_annot": 247, "chembl": [248, 249, 250, 251, 252, 253, 254, 255], "chembl_act": 249, "chembl_assai": 250, "chembl_docu": 251, "chembl_drug_ind": 252, "chembl_mechan": 253, "chembl_molecul": 254, "chembl_target": 255, "clinvar": [256, 257, 258], "clinvar_cit": 257, "clinvar_raw": 258, "collectri": [259, 260, 261], "collectri_interact": 260, "collectri_raw": 261, "csv_sep_chang": 263, "glom_field": 264, "json_extract": 265, "json_read": 266, "read_tabl": 267, "read_xl": 268, "compath": [269, 270], "compath_map": 270, "compleat_complex": 272, "compleat_raw": 273, "complexportal_complex": 275, "comppi_interaction_loc": 277, "comppi_loc": 278, "connectomedb_annot": 280, "connectomedb_interact": 281, "corum_complex": 283, "cosmic": [284, 285], "cancer_gene_census_annot": 285, "cpad_annot": 287, "cpad_pathway_canc": 288, "get_cpad": 289, "cpdb": [290, 291, 292], "cpdb_interact": 291, "cpdb_interactions_ltp": 292, "credenti": [293, 294], "csa": [295, 296], "get_csa": 296, "cspa": [297, 298, 299, 300], "cspa_annot": 298, "cspa_cell_type_annot": 299, "cspa_cell_typ": 300, "ctdbase": [301, 302, 303], "ctdbase_rel": 302, "ctdbase_vocabulari": 303, "cytosig_annot": 305, "cytosig_df": 306, "dbptm": [307, 308, 309, 310], "dbptm_enzyme_substr": 308, "dbptm_enzyme_substrate_old": 309, "dbptm_interact": 310, "ddinter": [311, 312, 313, 314, 315, 316], "ddinter_drug_interact": 312, "ddinter_identifi": 313, "ddinter_interact": 314, "ddinter_map": 315, "ddinter_n_drug": 316, "deathdomain": [317, 318, 319], "deathdomain_interact": 318, "deathdomain_interactions_rescu": 319, "depod": [320, 321, 322], "depod_enzyme_substr": 321, "depod_interact": 322, "dgidb_annot": 324, "dgidb_interact": 325, "get_dgidb_old": 326, "dip": [327, 328, 329], "dip_interact": 328, "dip_login": 329, "diseas": [330, 331, 332, 333, 334, 335, 336, 337, 1174], "diseases_gener": 331, "experiments_filt": 332, "experiments_ful": 333, "knowledge_filt": 334, "knowledge_ful": 335, "textmining_filt": 336, "textmining_ful": 337, "domino": [338, 339, 340, 341, 342], "domino_ddi": 339, "domino_enzsub": 340, "domino_interact": 341, "get_domino": 342, "dorothea": [343, 344, 345, 346, 347, 348, 349, 350, 351, 352, 353, 1247], "dorotheainteract": 344, "dorothea_full_raw": 345, "dorothea_interact": 346, "detail": [346, 347, 348, 350, 352, 353], "dorothea_interactions_old": 347, "dorothea_old_csv": 348, "dorothea_rda_raw": 349, "get_dorothea_old": 350, "get_tfregulon": 351, "tfregulons_interact": 352, "tfregulons_interactions_old": 353, "drugbank": [354, 355, 356, 357, 358, 359, 360], "drugbankful": 355, "drugbank_annot": 356, "drugbank_drug": 357, "drugbank_interact": 358, "drugbank_map": 359, "drugbank_raw_interact": 360, "drugcentr": [361, 362, 363, 364], "drugcentral_drug": 362, "drugcentral_interact": 363, "drugcentral_map": 364, "ebi": [365, 366], "ebi_rest": 366, "elm": [367, 368, 369, 370, 371], "elm_class": 368, "elm_domain": 369, "elm_inst": 370, "elm_interact": 371, "embopress": [372, 373], "embopress_supplementari": 373, "embrace_annot": 375, "embrace_interact": 376, "embrace_raw": 377, "embrace_transl": 378, "encod": [379, 380], "encode_tf_mirna_interact": 380, "ensembl": [381, 382], "ensembl_organ": 382, "eutil": [383, 384], "esummari": 384, "get_exocarta": 386, "get_vesiclepedia": 387, "expasi": [388, 389, 390], "expasy_enzyme_class": 389, "expasy_enzym": 390, "genecard": [391, 392, 393, 394], "genecards_datasheet": 392, "genecards_soup": 393, "genecards_summari": 394, "get_method": 395, "go": [396, 397, 398, 399, 400, 401, 402, 403, 404, 405, 406, 407, 408, 409, 410, 411, 412, 413, 414, 415, 416, 417, 1057, 1058, 1059, 1060, 1061, 1062, 1063, 1064], "get_go_desc": 397, "get_go_quick": 398, "get_goslim": 399, "go_ancestor": 400, "go_ancestors_goos": 401, "go_ancestors_quickgo": 402, "go_annot": 403, "go_annotations_al": 404, "go_annotations_goa": 405, "go_annotations_goos": 406, "go_annotations_quickgo": 407, "go_annotations_solr": 408, "go_annotations_uniprot": 409, "go_descend": 410, "go_descendants_goos": 411, "go_descendants_quickgo": 412, "go_descendants_to_ancestor": 413, "go_term": 414, "go_terms_goos": 415, "go_terms_quickgo": 416, "go_terms_solr": 417, "gpcrdb_annot": 419, "graphviz": [420, 421], "graphviz_attr": 421, "guide2pharma": [422, 423, 424, 425], "guide2pharma_complex": 423, "guide2pharma_download": 424, "guide2pharma_interact": 425, "gutmgen": [426, 427, 428, 429, 430], "gutmgeneannot": 427, "gutmgeneraw": 428, "gutmgene_annot": 429, "gutmgene_raw": 430, "get_havugimana": 432, "havugimana_complex": 433, "hgnc_genegroup": 435, "hippi": [436, 437], "hippie_interact": 437, "hmdb": [438, 439, 440, 441, 442, 443, 444, 445, 446, 447, 448, 449, 450, 451, 452, 453, 454, 455, 456, 457, 458, 459, 460, 461, 462, 463, 464, 465, 1247], "iter": [440, 445, 450], "map": [441, 446, 451, 989, 1065, 1066, 1067, 1068, 1069, 1070, 1071, 1072, 1073, 1074, 1075, 1076, 1077, 1078, 1079, 1080, 1081, 1082, 1083], "raw": [442, 447, 452], "tabl": [443, 448, 453, 1247], "metabolit": [444, 445, 446, 447, 448, 457], "protein": [449, 450, 451, 452, 453, 458, 771, 772, 1122, 1247], "schema": [454, 455, 456, 457, 458], "field": 456, "structur": [459, 460, 1247], "sdf": 460, "visual": [461, 462, 463, 1222, 1223, 1224, 1225, 1226, 1227, 1228, 1229, 1230, 1231, 1232, 1233, 1234, 1235, 1236, 1237, 1238, 1239, 1240, 1241, 1242, 1243, 1244], "show_structur": 462, "structure_svg": 463, "xml": [464, 465], "hmdb_xml": 465, "homologen": [466, 467, 468, 469], "get_homologen": 467, "homologene_dict": 468, "homologene_uniprot_dict": 469, "hpmrinteract": 471, "get_hpmr": 472, "hpmr_annot": 473, "hpmr_complex": 474, "hpmr_interact": 475, "hpo_annot": 477, "hpo_diseas": 478, "hpo_ontologi": 479, "hpo_term": 480, "hprd": [481, 482, 483, 484, 485], "get_hprd": 482, "hprd_enzyme_substr": 483, "hprd_interact": 484, "hprd_interactions_htp": 485, "htri": [486, 487], "htri_interact": 487, "humancellmap_annot": 489, "humap2_complex": 491, "humap_complex": 492, "humsavar": [493, 494], "uniprot_vari": 494, "huri": [495, 496, 497, 498, 499, 500, 501, 502, 503, 504, 505, 506, 507], "hi_i_interact": 496, "hi_ii_interact": 497, "hi_iii_old": 498, "hi_union_interact": 499, "huri_interact": 500, "lit_bm_13_interact": 501, "lit_bm_17_interact": 502, "lit_bm_interact": 503, "rolland_hi_ii_14": 504, "vidal_hi_iii_old": 505, "yang2016_interact": 506, "yu2011_interact": 507, "i3d": [508, 509], "get_i3d": 509, "icellnetrecord": 511, "icellnet_annot": 512, "icellnet_complex": 513, "icellnet_interact": 514, "ielm": [515, 516, 517], "get_ielm": 516, "get_ielm_hug": 517, "imweb": [518, 519, 520], "get_imweb": 519, "get_imweb_req": 520, "innatedb": [521, 522], "innatedb_interact": 522, "instruct": [523, 524, 525], "get_instruct": 524, "get_instruct_offset": 525, "intact": [526, 527], "intact_interact": 527, "get_integrin": 529, "interpro2go_annot": 531, "interpro_annot": 532, "interpro_entri": 533, "interpro_xref": 534, "intogen_annot": 536, "ipi": [537, 538], "ipi_uniprot": 538, "iptmnet": [539, 540, 541], "iptmnetinteract": 540, "iptmnet_interact": 541, "italk_annot": 543, "italk_interact": 544, "italk_raw": 545, "kea": [546, 547, 548], "kea_enzyme_substr": 547, "kea_interact": 548, "kegg_dbget": 551, "kegg_interact": 552, "kegg_medicu": 553, "kegg_medicus_complex": 554, "kegg_medicus_interact": 555, "kegg_pathway_annot": 556, "kegg_pathway_annotations_pathwaycommon": 557, "kegg_pathwai": 558, "kegg_api": [559, 560, 561, 562, 563, 564, 565, 566, 567, 568, 569, 570, 571, 572, 573, 574, 575], "disease_to_drug": 560, "disease_to_gen": 561, "disease_to_pathwai": 562, "drug_to_diseas": 563, "drug_to_drug": 564, "drug_to_gen": 565, "drug_to_pathwai": 566, "gene_to_diseas": 567, "gene_to_drug": 568, "gene_to_pathwai": 569, "kegg_drug_to_chebi": 570, "kegg_gene_to_ncbi_geneid": 571, "kegg_gene_to_uniprot": 572, "pathway_to_diseas": 573, "pathway_to_drug": 574, "pathway_to_gen": 575, "kinasedotcom_annot": 577, "kirouac2010_interact": 579, "lambert2018_annot": 581, "lambert2018_s1_raw": 582, "laudanna": [583, 584, 585], "laudanna_direct": 584, "laudanna_effect": 585, "li2012": [586, 587, 588, 589, 590], "get_li2012": 587, "li2012_dmi": 588, "li2012_enzyme_substr": 589, "li2012_interact": 590, "linc": [591, 592], "lincs_compound": 592, "lmpid": [593, 594, 595, 596], "lmpid_dmi": 594, "lmpid_interact": 595, "load_lmpid": 596, "lncdiseas": [597, 598], "lncdisease_interact": 598, "lncrnadb": [599, 600], "lncrnadb_interact": 600, "locate_loc": 602, "lrdbannot": 604, "lrdb_annot": 605, "lrdb_interact": 606, "macrophag": [607, 608], "macrophage_interact": 608, "main": 609, "matrisome_annot": 611, "matrixdb_annot": 613, "matrixdb_ecm_protein": 614, "matrixdb_interact": 615, "matrixdb_membrane_protein": 616, "matrixdb_secreted_protein": 617, "mcam_cell_adhesion_molecul": 619, "membranome_annot": 621, "mimp": [622, 623, 624, 625], "get_kinase_class": 623, "mimp_enzyme_substr": 624, "mimp_interact": 625, "mir2diseas": [626, 627], "mir2disease_interact": 627, "mirbas": [628, 629, 630, 631, 632, 633, 634, 635], "get_mirbase_alias": 629, "mirbase_id": 630, "mirbase_matur": 631, "mirbase_mature_al": 632, "mirbase_precursor": 633, "mirbase_precursor_al": 634, "mirbase_precursor_to_matur": 635, "mirdeathdb": [636, 637], "mirdeathdb_interact": 637, "mirecord": [638, 639], "mirecords_interact": 639, "mirtarbas": [640, 641], "mirtarbase_interact": 641, "mitab": [642, 643, 644], "mitab_field_list": 643, "mitab_field_uniprot": 644, "mppi": [645, 646], "mppi_interact": 646, "msigdb_annot": 648, "msigdb_download": 649, "msigdb_download_collect": 650, "ncrdeathdb": [651, 652], "ncrdeathdb_interact": 652, "negatom": [653, 654], "negatome_interact": 654, "netbiol": [655, 656, 657], "arn_interact": 656, "nrf2ome_interact": 657, "netpath": [658, 659, 660, 661], "netpath_interact": 659, "netpath_nam": 660, "netpath_pathway_annot": 661, "offsid": [662, 663], "offsides_side_effect": 663, "oma": [664, 665, 666], "oma_ortholog": 665, "oma_t": 666, "ontologi": [667, 668, 669, 1247], "listof_ontologi": 668, "opentarget": [670, 671, 672, 673, 674, 675], "opentargets_adverse_react": 671, "opentargets_baseline_express": 672, "opentargets_direct_scor": 673, "opentargets_gener": 674, "opentargets_indirect_scor": 675, "opm_annot": 677, "oreganno": [678, 679, 680], "oreganno_interact": 679, "oreganno_raw": 680, "panglaodb_annot": 682, "panglaodb_raw": 683, "pathophenodb": [684, 685, 686], "diseasepathogen": 685, "disease_pathogen_interact": 686, "pathwaycommon": [687, 688, 689, 690, 691, 692, 693, 694, 695, 696, 697, 698, 699, 700, 701, 702, 703], "pathwaycommonsinteract": 688, "pathwaycommonsresourc": 689, "pathwaycommons_bind_interact": 690, "pathwaycommons_biogrid_interact": 691, "pathwaycommons_corum_interact": 692, "pathwaycommons_dip_interact": 693, "pathwaycommons_hprd_interact": 694, "pathwaycommons_inoh_interact": 695, "pathwaycommons_intact_interact": 696, "pathwaycommons_interact": 697, "pathwaycommons_kegg_interact": 698, "pathwaycommons_netpath_interact": 699, "pathwaycommons_panther_interact": 700, "pathwaycommons_phosphosite_interact": 701, "pathwaycommons_reactome_interact": 702, "pathwaycommons_wikipathways_interact": 703, "pazar": [704, 705], "pazar_interact": 705, "pdb_chain": 707, "pdb_complex": 708, "pdb_uniprot": 709, "pdzbase": [710, 711], "pdzbase_interact": 711, "pepcyb": [712, 713, 714], "pepcyber_detail": 713, "pepcyber_interact": 714, "pfam": [715, 716, 717, 718, 719, 1139], "pfam_nam": 716, "pfam_pdb": 717, "pfam_region": 718, "pfam_uniprot": 719, "pharo": [720, 721, 722, 723, 724, 725, 726, 727, 728], "pharos_diseas": 721, "pharos_express": 722, "pharos_gener": 723, "pharos_gtex": 724, "pharos_ligand": 725, "pharos_ortholog": 726, "pharos_target": 727, "pharos_xref": 728, "phobius_annot": 730, "phosphatome_annot": 732, "phosphoelm": [733, 734, 735, 736], "phosphoelm_enzyme_substr": 734, "phosphoelm_interact": 735, "phosphoelm_kinas": 736, "phosphonetwork": [737, 738, 739], "phosphonetworks_enzyme_substr": 738, "phosphonetworks_interact": 739, "phosphopoint": [740, 741, 742], "phosphopoint_direct": 741, "phosphopoint_interact": 742, "phosphosit": [743, 744, 745, 746, 747, 748, 749, 750, 751, 752, 753, 754, 755], "phosphosite_direct": 744, "phosphosite_enzyme_substr": 745, "phosphosite_interact": 746, "phosphosite_interactions_al": 747, "phosphosite_interactions_cur": 748, "phosphosite_interactions_new": 749, "phosphosite_interactions_noref": 750, "phosphosite_ptm_orthologi": 751, "phosphosite_ptm": 752, "phosphosite_regsit": 753, "phosphosite_regsites_one_organ": 754, "regsites_tab": 755, "pisa": [756, 757, 758, 759], "pisabond": 757, "pisa_bond": 758, "pisa_interfac": 759, "pro": [760, 761, 762], "get_pro": 761, "pro_map": 762, "progeny_annot": 764, "progeny_raw": 765, "proteinatla": [766, 767, 768, 769, 770], "get_proteinatla": 767, "proteinatlas_annot": 768, "proteinatlas_secretome_annot": 769, "proteinatlas_subcellular_annot": 770, "variant": 772, "protmapp": [773, 774, 775, 776], "get_protmapp": 774, "protmapper_enzyme_substr": 775, "protmapper_interact": 776, "pubchem": [777, 778], "pubchem_map": 778, "pubm": [779, 780, 781, 782, 783, 784, 785], "get_pmid": 780, "get_pubm": 781, "only_pmid": 782, "open_pubm": 783, "pmids_dict": 784, "pmids_list": 785, "ramilowski_interact": 787, "ramilowski_loc": 788, "ramp": [789, 790, 791, 792, 793, 794, 795, 1247], "ramp_id_typ": 790, "ramp_id_types_2": 791, "ramp_list_t": 792, "ramp_map": 793, "ramp_raw": 794, "ramp_show_t": 795, "rdata": 796, "reaction": [797, 798, 799, 800, 801, 802, 803, 804, 805, 806, 807, 808, 809, 810, 811, 812, 813, 814, 815, 816, 1125], "acsn_biopax": 798, "acsn_interactions_2": 799, "get_acsn_effect": 800, "get_control": [801, 1019], "get_interact": 802, "get_react": 803, "get_soup": 804, "panther_biopax": 805, "panther_interact": 806, "pid_biopax": 807, "pid_interact": 808, "process_complex": 809, "process_control": 810, "process_react": 811, "reactions_biopax": 812, "reactome_biopax": 813, "reactome_b": 814, "reactome_interact": 815, "reactome_sbml": 816, "reactom": [817, 818, 819, 820, 821], "reactome_chebi": 818, "reactome_pathway_rel": 819, "reactome_pathwai": 820, "reactome_uniprot": 821, "scconnect_annot": 823, "scconnect_complex": 824, "scconnect_interact": 825, "scienc": [826, 827], "science_download": 827, "sider": [828, 829, 830, 831, 832, 833, 834, 835, 836], "siderdrug": 829, "sidersideeffect": 830, "sidersideeffectmeddra": 831, "sidersideeffetfrequ": 832, "sider_drug_nam": 833, "sider_meddra_side_effect": 834, "sider_side_effect_frequ": 835, "sider_side_effect": 836, "signalink": [837, 838, 839, 840, 841], "signalink_annot": 838, "signalink_function_annot": 839, "signalink_interact": 840, "signalink_pathway_annot": 841, "signor_complex": 843, "signor_enzyme_substr": 844, "signor_interact": 845, "signor_pathway_annot": 846, "signor_pathwai": 847, "signor_protein_famili": 848, "spike_complex": 850, "spike_interact": 851, "stitch": [852, 853, 854], "stitch_actions_interact": 853, "stitch_links_interact": 854, "string": [855, 856, 857, 858, 859], "string_effect": 856, "string_links_interact": 857, "string_physical_interact": 858, "string_speci": 859, "surfaceome_annot": 861, "switches_elm": [862, 863], "get_switches_elm": 863, "talklr_annot": 865, "talklr_interact": 866, "talklr_raw": 867, "tcdb_annot": 869, "tcdb_class": 870, "tcdb_famili": 871, "tfcensus_annot": 873, "threedcomplex": [874, 875, 876, 877, 878, 879], "threedcomplex_chain": 875, "threedcomplex_complex": 876, "threedcomplex_contact": 877, "threedcomplex_ddi": 878, "threedcomplex_nresidu": 879, "threedid": [880, 881, 882, 883, 884], "get_3did": 881, "get_3did_ddi": 882, "get_3did_dmi": 883, "process_3did_dmi": 884, "topdb_annot": 886, "transmir": [887, 888], "transmir_interact": 888, "trip": [889, 890, 891, 892, 893, 894, 895], "take_a_trip": 890, "trip_find_uniprot": 891, "trip_get_uniprot": 892, "trip_interact": 893, "trip_process": 894, "trip_process_t": 895, "trrust": [896, 897, 898, 899], "trrust_human": 897, "trrust_interact": 898, "trrust_mous": 899, "twosid": [900, 901], "twosides_interact": 901, "unichem": [902, 903, 904, 905, 906, 1160, 1161], "unichem_info": 904, "unichem_map": 905, "unichem_sourc": 906, "uniprot": [907, 908, 909, 910, 911, 912, 913, 914, 915, 916, 917, 918, 919, 920, 921, 922, 923, 924, 925, 926, 927, 928, 929, 930, 931, 932, 933, 1162, 1163, 1164, 1165, 1166, 1167, 1168, 1169, 1170, 1171, 1172, 1173, 1174, 1175, 1176, 1177, 1178, 1179, 1180, 1181, 1182, 1183, 1184, 1185, 1186, 1187, 1188, 1189, 1190, 1191, 1192, 1193, 1194, 1195, 1196, 1197, 1198, 1199, 1200, 1201, 1202, 1203, 1204, 1205, 1206, 1207, 1208, 1209, 1210, 1211, 1212, 1213, 1214, 1215, 1216, 1217, 1218, 1219, 1220, 1221, 1247], "taxon": 908, "uniprotqueri": 909, "uniprotrecordhistori": 910, "deleted_uniprot_genesymbol": 911, "get_uniprot_sec": 912, "idmapping_idtyp": 913, "protein_datasheet": 914, "query_build": 915, "swissprot_delet": 916, "trembl_delet": 917, "uniprot_data": 918, "uniprot_delet": 919, "uniprot_famili": 920, "uniprot_histori": 921, "uniprot_history_recent_datasheet": 922, "uniprot_keyword": 923, "uniprot_loc": 924, "uniprot_ncbi_taxid": 925, "uniprot_ncbi_taxids_2": 926, "uniprot_preprocess": 927, "uniprot_queri": 928, "uniprot_recent_vers": 929, "uniprot_taxonomi": 930, "uniprot_tissu": 931, "uniprot_topologi": 932, "valid_uniprot": 933, "uniprot_db": [934, 935, 936, 937, 938, 939, 940, 941, 942], "all_swissprot": 935, "all_trembl": 936, "all_uniprot": 937, "is_swissprot": 940, "is_trembl": 941, "is_uniprot": 942, "cui_interact": 944, "hsn_interact": 945, "wang_annot": 946, "wang_interact": 947, "wojtowicz2020": [948, 949, 950], "wojtowicz2020_interact": 949, "wojtowicz2020_raw": 950, "zhong2015_annot": 952, "intern": [953, 954, 955, 956, 957, 958, 959, 960, 961, 962, 963, 964, 965, 966, 967, 968, 969, 970, 971, 972, 973, 974, 975, 976, 977, 978, 979, 980, 981, 982, 983, 984, 985, 986, 987, 988, 989, 990, 991, 992, 993, 994, 995, 996, 997, 998, 999, 1000], "annot_format": [954, 955, 956, 957, 958], "annotdef": 955, "annotdefkei": 956, "annotop": 957, "annotationgroup": 958, "input_format": [959, 960, 961, 962, 963, 964, 965, 966, 967, 968, 969, 970, 971, 972], "arraymap": 960, "biomartmap": 961, "filemap": 962, "hmdbmap": 963, "mappinginput": 964, "networkinput": 965, "picklemap": 966, "promap": 967, "rampmap": 968, "readlist": 969, "unichemmap": 970, "uniprotlistmap": 971, "uniprotmap": 972, "intera": [973, 974, 975, 976, 977, 978, 979, 980, 981, 982], "domain": 975, "domaindomain": 976, "domainmotif": 977, "interfac": 978, "motif": 979, "ptm": [980, 1200], "regul": [981, 1247], "residu": [982, 1107, 1136, 1137], "licens": [983, 984, 985, 986, 987, 988, 1020, 1021, 1247], "licenseattrib": 985, "licensefeatur": 986, "licensepurpos": 987, "licenseshar": 988, "ref": [990, 991, 992], "refer": [991, 1127, 1247, 1248], "get_pubmed_data": 992, "resourc": [993, 994, 995, 996, 997, 998, 999, 1000, 1006, 1007, 1008, 1009, 1010, 1011, 1012, 1013, 1014, 1015, 1016, 1017, 1018, 1019, 1020, 1021, 1022, 1023, 1024, 1025, 1026, 1140, 1247], "abstractresourc": 994, "enzymesubstrateresourc": 995, "enzymesubstrateresourcekei": 996, "networkdataset": 997, "networkresourc": 998, "networkresourcekei": 999, "resourceattribut": 1000, "legaci": [1001, 1002, 1003, 1004, 1247], "db_categori": [1002, 1003, 1004], "get_categori": [1003, 1004], "log": [1005, 1247], "control": [1007, 1008, 1118], "resourcecontrol": 1008, "data_format": [1010, 1011, 1012, 1013, 1014, 1015, 1016, 1017, 1018], "activity_flow": 1011, "enzyme_substr": 1012, "interaction_htp": 1014, "pathway_bad": 1015, "reaction_pc": 1016, "transcription_deprec": 1017, "transcription_onebyon": 1018, "choose_dataset": 1023, "dataset_prior": 1024, "dorothea_expand_level": 1025, "url": 1026, "share": [1027, 1028, 1029, 1030, 1031, 1032, 1033, 1034, 1035, 1036, 1037, 1038, 1039, 1040, 1041, 1042, 1043, 1044, 1045, 1046, 1047, 1048, 1049, 1050, 1051, 1052, 1053, 1054, 1055], "cach": [1028, 1029, 1030, 1031, 1032, 1247], "cache_item": 1029, "cache_path": 1030, "default_cachedir": 1031, "get_cachedir": 1032, "constant": 1034, "curl": [1035, 1036, 1037, 1038, 1039, 1040, 1041, 1042, 1043, 1044, 1045, 1046, 1047, 1048, 1049, 1050, 1051, 1247], "fileopen": 1037, "remotefil": 1038, "cache_delete_off": 1039, "cache_delete_on": 1040, "cache_off": 1041, "cache_on": 1042, "cache_print_off": 1043, "cache_print_on": 1044, "debug_off": 1045, "debug_on": 1046, "dryrun_off": 1047, "dryrun_on": 1048, "is_url": 1049, "preserve_off": 1050, "preserve_on": 1051, "progress": [1052, 1053], "session": [1054, 1247], "set": 1055, "util": [1056, 1057, 1058, 1059, 1060, 1061, 1062, 1063, 1064, 1065, 1066, 1067, 1068, 1069, 1070, 1071, 1072, 1073, 1074, 1075, 1076, 1077, 1078, 1079, 1080, 1081, 1082, 1083, 1084, 1085, 1086, 1087, 1088, 1089, 1090, 1091, 1092, 1093, 1094, 1095, 1096, 1097, 1098, 1099, 1100, 1101, 1102, 1103, 1104, 1105, 1106, 1107, 1108, 1109, 1110, 1111, 1112, 1113, 1114, 1115, 1116, 1117, 1118, 1119, 1120, 1121, 1122, 1123, 1124, 1125, 1126, 1127, 1128, 1129, 1130, 1131, 1132, 1133, 1134, 1135, 1136, 1137, 1138, 1139, 1140, 1141, 1142, 1143, 1144, 1145, 1146, 1147, 1148, 1149, 1150, 1151, 1152, 1153, 1154, 1155, 1156, 1157, 1158, 1159, 1160, 1161, 1162, 1163, 1164, 1165, 1166, 1167, 1168, 1169, 1170, 1171, 1172, 1173, 1174, 1175, 1176, 1177, 1178, 1179, 1180, 1181, 1182, 1183, 1184, 1185, 1186, 1187, 1188, 1189, 1190, 1191, 1192, 1193, 1194, 1195, 1196, 1197, 1198, 1199, 1200, 1201, 1202, 1203, 1204, 1205, 1206, 1207, 1208, 1209, 1210, 1211, 1212, 1213, 1214, 1215, 1216, 1217, 1218, 1219, 1220, 1221, 1247], "goannot": 1058, "gocustomannot": 1059, "geneontologi": 1060, "load_go": 1064, "mapread": 1066, "mapper": 1067, "mappingt": 1068, "mappingtablekei": 1069, "uniprot_id_typ": 1070, "get_mapp": 1071, "guess_typ": 1072, "id_from_label": 1073, "id_from_label0": 1074, "id_typ": 1075, "init": [1076, 1103, 1133], "label": 1077, "map_nam": [1078, 1080], "map_name0": 1079, "mapping_t": 1081, "translation_df": 1082, "translation_dict": 1083, "metabo": 1084, "orthologi": [1085, 1086, 1087, 1088, 1089, 1090, 1091, 1092, 1093, 1094, 1095, 1096, 1097, 1098, 1099, 1100, 1101, 1102, 1103, 1104, 1105, 1247], "ensemblortholog": 1086, "ensemblorthologi": 1087, "homologeneortholog": 1088, "homologeneorthologi": 1089, "omaortholog": 1090, "omaorthologi": 1091, "orthologbas": 1092, "orthologmeta": 1093, "orthologymanag": 1094, "orthologytablekei": 1095, "proteinorthologi": 1096, "proteom": 1097, "ptmorthologi": 1098, "sequencecontain": 1099, "get_df": 1100, "get_dict": 1101, "get_manag": [1102, 1131], "translat": [1104, 1246, 1247], "translate_df": 1105, "residuemapp": [1108, 1137], "segment": 1109, "residue_pdb": 1110, "proteomicsdb": [1111, 1112], "pyreact": [1113, 1114, 1115, 1116, 1117, 1118, 1119, 1120, 1121, 1122, 1123, 1124, 1125, 1126, 1127], "biopaxread": 1115, "complexvari": 1117, "entityset": 1120, "intersect": 1121, "proteinfamili": 1123, "reactionsid": 1126, "reflist": [1128, 1129, 1130, 1131, 1132, 1133, 1134, 1135], "referencelistmanag": 1129, "check": 1130, "get_reflist": 1132, "is_not": 1134, "select": [1135, 1247], "seq": [1138, 1139, 1140, 1141, 1142, 1143, 1144], "get_isoform": 1142, "read_fasta": 1143, "swissprot_seq": 1144, "taxonomi": [1145, 1146, 1147, 1148, 1149, 1150, 1151, 1152, 1153, 1154, 1155, 1156, 1157, 1158, 1159, 1247], "ensure_common_nam": 1146, "ensure_ensembl_nam": 1147, "ensure_latin_nam": 1148, "ensure_ncbi_tax_id": 1149, "short_latin_nam": 1152, "shorten_latin_nam": 1153, "taxid_from_common_nam": 1154, "taxid_from_dbptm_taxon_nam": 1155, "taxid_from_ensembl_nam": 1156, "taxid_from_latin_nam": 1157, "taxid_from_nonstandard": 1158, "uniprot_taxid": 1159, "uniprotprotein": 1163, "ac": 1164, "activity_regul": 1165, "activity_regulation_with_xref": 1166, "alternative_product": 1167, "alternative_products_with_xref": 1168, "brows": [1169, 1247], "catalytic_act": 1170, "catalytic_activity_with_xref": 1171, "collect": 1172, "databas": [1173, 1246, 1247], "disease_with_xref": 1175, "ec": 1176, "features_t": 1177, "full_nam": 1178, "function": 1179, "function_genecard": 1180, "function_or_genecard": 1181, "function_with_genecard": 1182, "function_with_xref": 1183, "genesymbol": 1184, "has_tag": 1185, "id": [1186, 1246, 1247], "info_sect": 1188, "interaction_with_xref": 1190, "is_review": 1191, "itertag": 1192, "keyword": 1193, "keywords_with_xref": 1194, "length": [1195, 1196], "load": [1197, 1247], "organ": [1198, 1247], "print_featur": 1199, "ptm_with_xref": 1201, "queri": [1202, 1247, 1250], "reload": 1203, "remove_xref": 1204, "sequenc": [1205, 1247], "sequence_caut": 1206, "sequence_caution_with_xref": 1207, "similar": 1208, "similarity_with_xref": 1209, "subcellular_loc": 1210, "subcellular_location_with_xref": 1211, "subunit": 1212, "subunit_with_xref": 1213, "tissue_specif": 1214, "tissue_specificity_with_xref": 1215, "update_databas": 1216, "update_info": 1217, "web_resourc": 1218, "web_resource_with_xref": 1219, "weight": [1220, 1221], "draw": [1223, 1224, 1225], "interset": 1224, "plot": [1225, 1247], "igraph_draw": [1226, 1227, 1228, 1229, 1230, 1231, 1232, 1233, 1234, 1235, 1236, 1237, 1238, 1239, 1240, 1241, 1242, 1243, 1244], "abstractcairographdraw": 1227, "arrowedgedraw": [1228, 1235], "defaultgraphdrawerffsupport": 1229, "defaultvertexdraw": [1230, 1244], "textdraw": 1231, "edg": [1232, 1233, 1234, 1235, 1236, 1237, 1238, 1247], "abstractedgedraw": 1233, "alphavaryingedgedraw": 1234, "darktolightedgedraw": 1236, "lighttodarkedgedraw": 1237, "taperededgedraw": 1238, "vertex": [1239, 1240, 1241, 1242, 1243, 1244], "abstractcairodraw": 1240, "abstractcairovertexdraw": 1241, "abstractdraw": 1242, "abstractvertexdraw": 1243, "content": [1245, 1247], "welcom": 1246, "omnipath": [1246, 1247], "do": [1246, 1247], "you": [1246, 1247], "need": 1246, "instal": 1246, "doc": 1246, "get": 1246, "help": 1246, "featur": 1246, "integr": 1246, "manag": [1246, 1247], "further": 1246, "modul": [1246, 1247], "convers": 1246, "homologi": 1246, "faq": 1246, "contact": 1246, "impressum": 1246, "histori": [1246, 1247, 1249], "releas": [1246, 1249], "The": 1247, "book": 1247, "introduct": 1247, "build": 1247, "save": 1247, "app": 1247, "built": 1247, "definit": 1247, "strictli": 1247, "literatur": 1247, "curat": 1247, "extra": 1247, "activ": 1247, "flow": 1247, "enzym": [1247, 1250], "substrat": [1247, 1250], "ligand": 1247, "receptor": 1247, "transcript": 1247, "from": 1247, "other": 1247, "mirna": 1247, "post": 1247, "lncrna": 1247, "mrna": 1247, "small": 1247, "molecul": 1247, "relationship": 1247, "inter": [1247, 1250], "cellular": [1247, 1250], "commun": [1247, 1250], "role": [1247, 1250], "directli": 1247, "origin": 1247, "interest": 1247, "tl": 1247, "dr": 1247, "human": 1247, "metabolom": 1247, "direct": 1247, "access": 1247, "higher": 1247, "level": 1247, "ncbi": 1247, "e": 1247, "download": 1247, "custom": 1247, "failur": 1247, "corrupt": 1247, "issu": 1247, "look": 1247, "debug": 1247, "timeout": 1247, "inspect": 1247, "object": 1247, "i": 1247, "fail": 1247, "onli": 1247, "read": 1247, "ssl": 1247, "http": 1247, "error": 1247, "exampl": [1247, 1250], "commerci": 1247, "us": 1247, "inform": 1247, "certain": 1247, "dataset": [1247, 1250], "which": 1247, "ar": 1247, "pre": 1247, "defin": 1247, "panda": 1247, "datafram": 1247, "self": 1247, "loop": 1247, "molecular": [1247, 1250], "identifi": 1247, "dictionari": 1247, "frame": 1247, "scientif": 1247, "name": 1247, "all": 1247, "one": 1247, "format": 1247, "valid": 1247, "singl": 1247, "datasheet": 1247, "record": 1247, "rest": 1247, "api": 1247, "process": 1247, "sanit": 1247, "full": 1247, "signal": 1247, "an": 1247, "intercellular": 1247, "quantit": 1247, "overview": 1247, "categori": 1247, "gene": 1247, "pickl": 1247, "messag": 1247, "basic": 1247, "about": 1247, "file": 1247, "consol": 1247, "disabl": 1247, "write": 1247, "send": 1247, "connect": 1247, "class": 1247, "logger": 1247, "bel": 1247, "export": 1247, "igraph": 1247, "base": 1247, "just": 1247, "want": 1247, "quickli": 1247, "plai": 1247, "around": 1247, "how": [1247, 1248], "ani": 1247, "creat": 1247, "2": [1247, 1249], "test": 1247, "sign": 1247, "node": 1247, "our": 1247, "without": 1247, "causal": 1247, "navig": 1248, "0": 1249, "1": 1249, "3": 1249, "4": 1249, "5": 1249, "32": 1249, "6": 1249, "31": 1249, "7": 1249, "74": 1249, "93": 1249, "110": 1249, "8": 1249, "9": 1249, "10": 1249, "11": 1249, "12": 1249, "13": 1249, "14": 1249, "upcom": 1249, "webservic": 1250, "type": 1250, "mous": 1250, "rat": 1250, "explor": 1250, "possibl": 1250, "paramet": 1250}, "envversion": {"sphinx.domains.c": 3, "sphinx.domains.changeset": 1, "sphinx.domains.citation": 1, "sphinx.domains.cpp": 9, "sphinx.domains.index": 1, "sphinx.domains.javascript": 3, "sphinx.domains.math": 2, "sphinx.domains.python": 4, "sphinx.domains.rst": 2, "sphinx.domains.std": 2, "sphinx.ext.viewcode": 1, "sphinx_last_updated_by_git": 1, "nbsphinx": 4, "sphinx": 60}, "alltitles": {"pypath": [[0, "module-pypath"]], "pypath.core": [[1, "module-pypath.core"]], "pypath.core.annot": [[2, "module-pypath.core.annot"]], "pypath.core.annot.Adhesome": [[3, "pypath-core-annot-adhesome"]], "pypath.core.annot.Almen2009": [[4, "pypath-core-annot-almen2009"]], "pypath.core.annot.AnnotationBase": [[5, "pypath-core-annot-annotationbase"]], "pypath.core.annot.AnnotationTable": [[6, "pypath-core-annot-annotationtable"]], "pypath.core.annot.Baccin2019": [[7, "pypath-core-annot-baccin2019"]], "pypath.core.annot.Biogps": [[8, "pypath-core-annot-biogps"]], "pypath.core.annot.CancerGeneCensus": [[9, "pypath-core-annot-cancergenecensus"]], "pypath.core.annot.Cancerdrugsdb": [[10, "pypath-core-annot-cancerdrugsdb"]], "pypath.core.annot.Cancersea": [[11, "pypath-core-annot-cancersea"]], "pypath.core.annot.CellPhoneDB": [[12, "pypath-core-annot-cellphonedb"]], "pypath.core.annot.CellPhoneDBComplex": [[13, "pypath-core-annot-cellphonedbcomplex"]], "pypath.core.annot.CellSurfaceProteinAtlas": [[14, "pypath-core-annot-cellsurfaceproteinatlas"]], "pypath.core.annot.CellSurfaceProteinAtlasCellType": [[15, "pypath-core-annot-cellsurfaceproteinatlascelltype"]], "pypath.core.annot.Cellcall": [[16, "pypath-core-annot-cellcall"]], "pypath.core.annot.Cellcellinteractions": [[17, "pypath-core-annot-cellcellinteractions"]], "pypath.core.annot.Cellchatdb": [[18, "pypath-core-annot-cellchatdb"]], "pypath.core.annot.CellchatdbComplex": [[19, "pypath-core-annot-cellchatdbcomplex"]], "pypath.core.annot.Cellinker": [[20, "pypath-core-annot-cellinker"]], "pypath.core.annot.CellinkerComplex": [[21, "pypath-core-annot-cellinkercomplex"]], "pypath.core.annot.Celltalkdb": [[22, "pypath-core-annot-celltalkdb"]], "pypath.core.annot.Celltypist": [[23, "pypath-core-annot-celltypist"]], "pypath.core.annot.Comppi": [[24, "pypath-core-annot-comppi"]], "pypath.core.annot.Connectomedb": [[25, "pypath-core-annot-connectomedb"]], "pypath.core.annot.Corum": [[26, "pypath-core-annot-corum"]], "pypath.core.annot.CorumFuncat": [[27, "pypath-core-annot-corumfuncat"]], "pypath.core.annot.CorumGO": [[28, "pypath-core-annot-corumgo"]], "pypath.core.annot.Cpad": [[29, "pypath-core-annot-cpad"]], "pypath.core.annot.CustomAnnotation": [[30, "pypath-core-annot-customannotation"]], "pypath.core.annot.Cytosig": [[31, "pypath-core-annot-cytosig"]], "pypath.core.annot.Dgidb": [[32, "pypath-core-annot-dgidb"]], "pypath.core.annot.Disgenet": [[33, "pypath-core-annot-disgenet"]], "pypath.core.annot.Embrace": [[34, "pypath-core-annot-embrace"]], "pypath.core.annot.Exocarta": [[35, "pypath-core-annot-exocarta"]], "pypath.core.annot.GOCustomIntercell": [[36, "pypath-core-annot-gocustomintercell"]], "pypath.core.annot.GOIntercell": [[37, "pypath-core-annot-gointercell"]], "pypath.core.annot.Gpcrdb": [[38, "pypath-core-annot-gpcrdb"]], "pypath.core.annot.GuideToPharmacology": [[39, "pypath-core-annot-guidetopharmacology"]], "pypath.core.annot.HPO": [[40, "pypath-core-annot-hpo"]], "pypath.core.annot.Hgnc": [[41, "pypath-core-annot-hgnc"]], "pypath.core.annot.HpmrComplex": [[42, "pypath-core-annot-hpmrcomplex"]], "pypath.core.annot.HumanPlasmaMembraneReceptome": [[43, "pypath-core-annot-humanplasmamembranereceptome"]], "pypath.core.annot.HumanProteinAtlas": [[44, "pypath-core-annot-humanproteinatlas"]], "pypath.core.annot.HumanProteinAtlasSecretome": [[45, "pypath-core-annot-humanproteinatlassecretome"]], "pypath.core.annot.HumanProteinAtlasSubcellular": [[46, "pypath-core-annot-humanproteinatlassubcellular"]], "pypath.core.annot.Humancellmap": [[47, "pypath-core-annot-humancellmap"]], "pypath.core.annot.Icellnet": [[48, "pypath-core-annot-icellnet"]], "pypath.core.annot.IcellnetComplex": [[49, "pypath-core-annot-icellnetcomplex"]], "pypath.core.annot.Integrins": [[50, "pypath-core-annot-integrins"]], "pypath.core.annot.InterPro": [[51, "pypath-core-annot-interpro"]], "pypath.core.annot.Intogen": [[52, "pypath-core-annot-intogen"]], "pypath.core.annot.Italk": [[53, "pypath-core-annot-italk"]], "pypath.core.annot.KeggPathways": [[54, "pypath-core-annot-keggpathways"]], "pypath.core.annot.KeggPathwaysPC": [[55, "pypath-core-annot-keggpathwayspc"]], "pypath.core.annot.Kinasedotcom": [[56, "pypath-core-annot-kinasedotcom"]], "pypath.core.annot.Kirouac2010": [[57, "pypath-core-annot-kirouac2010"]], "pypath.core.annot.Lambert2018": [[58, "pypath-core-annot-lambert2018"]], "pypath.core.annot.LigandReceptor": [[59, "pypath-core-annot-ligandreceptor"]], "pypath.core.annot.Locate": [[60, "pypath-core-annot-locate"]], "pypath.core.annot.Lrdb": [[61, "pypath-core-annot-lrdb"]], "pypath.core.annot.Matrisome": [[62, "pypath-core-annot-matrisome"]], "pypath.core.annot.Matrixdb": [[63, "pypath-core-annot-matrixdb"]], "pypath.core.annot.Mcam": [[64, "pypath-core-annot-mcam"]], "pypath.core.annot.Membranome": [[65, "pypath-core-annot-membranome"]], "pypath.core.annot.Msigdb": [[66, "pypath-core-annot-msigdb"]], "pypath.core.annot.NetpathPathways": [[67, "pypath-core-annot-netpathpathways"]], "pypath.core.annot.Opm": [[68, "pypath-core-annot-opm"]], "pypath.core.annot.Panglaodb": [[69, "pypath-core-annot-panglaodb"]], "pypath.core.annot.Phobius": [[70, "pypath-core-annot-phobius"]], "pypath.core.annot.Phosphatome": [[71, "pypath-core-annot-phosphatome"]], "pypath.core.annot.Progeny": [[72, "pypath-core-annot-progeny"]], "pypath.core.annot.Ramilowski2015": [[73, "pypath-core-annot-ramilowski2015"]], "pypath.core.annot.Ramilowski2015Location": [[74, "pypath-core-annot-ramilowski2015location"]], "pypath.core.annot.Scconnect": [[75, "pypath-core-annot-scconnect"]], "pypath.core.annot.ScconnectComplex": [[76, "pypath-core-annot-scconnectcomplex"]], "pypath.core.annot.SignalinkFunctions": [[77, "pypath-core-annot-signalinkfunctions"]], "pypath.core.annot.SignalinkPathways": [[78, "pypath-core-annot-signalinkpathways"]], "pypath.core.annot.SignorPathways": [[79, "pypath-core-annot-signorpathways"]], "pypath.core.annot.Surfaceome": [[80, "pypath-core-annot-surfaceome"]], "pypath.core.annot.Talklr": [[81, "pypath-core-annot-talklr"]], "pypath.core.annot.Tcdb": [[82, "pypath-core-annot-tcdb"]], "pypath.core.annot.Tfcensus": [[83, "pypath-core-annot-tfcensus"]], "pypath.core.annot.Topdb": [[84, "pypath-core-annot-topdb"]], "pypath.core.annot.UniprotFamilies": [[85, "pypath-core-annot-uniprotfamilies"]], "pypath.core.annot.UniprotKeywords": [[86, "pypath-core-annot-uniprotkeywords"]], "pypath.core.annot.UniprotLocations": [[87, "pypath-core-annot-uniprotlocations"]], "pypath.core.annot.UniprotTissues": [[88, "pypath-core-annot-uniprottissues"]], "pypath.core.annot.UniprotTopologies": [[89, "pypath-core-annot-uniprottopologies"]], "pypath.core.annot.Vesiclepedia": [[90, "pypath-core-annot-vesiclepedia"]], "pypath.core.annot.Wang": [[91, "pypath-core-annot-wang"]], "pypath.core.annot.Zhong2015": [[92, "pypath-core-annot-zhong2015"]], "pypath.core.annot.get_db": [[93, "pypath-core-annot-get-db"]], "pypath.core.annot.init_db": [[94, "pypath-core-annot-init-db"]], "pypath.core.attrs": [[95, "module-pypath.core.attrs"]], "pypath.core.attrs.AttributeHandler": [[96, "pypath-core-attrs-attributehandler"]], "pypath.core.common": [[97, "module-pypath.core.common"]], "pypath.core.common.filter_network_df": [[98, "pypath-core-common-filter-network-df"]], "pypath.core.complex": [[99, "module-pypath.core.complex"]], "pypath.core.complex.AbstractComplexResource": [[100, "pypath-core-complex-abstractcomplexresource"]], "pypath.core.complex.CellPhoneDB": [[101, "pypath-core-complex-cellphonedb"]], "pypath.core.complex.Cellchatdb": [[102, "pypath-core-complex-cellchatdb"]], "pypath.core.complex.Cellinker": [[103, "pypath-core-complex-cellinker"]], "pypath.core.complex.Compleat": [[104, "pypath-core-complex-compleat"]], "pypath.core.complex.ComplexAggregator": [[105, "pypath-core-complex-complexaggregator"]], "pypath.core.complex.ComplexPortal": [[106, "pypath-core-complex-complexportal"]], "pypath.core.complex.Corum": [[107, "pypath-core-complex-corum"]], "pypath.core.complex.GuideToPharmacology": [[108, "pypath-core-complex-guidetopharmacology"]], "pypath.core.complex.Havugimana": [[109, "pypath-core-complex-havugimana"]], "pypath.core.complex.Hpmr": [[110, "pypath-core-complex-hpmr"]], "pypath.core.complex.Humap": [[111, "pypath-core-complex-humap"]], "pypath.core.complex.Humap2": [[112, "pypath-core-complex-humap2"]], "pypath.core.complex.Icellnet": [[113, "pypath-core-complex-icellnet"]], "pypath.core.complex.Kegg": [[114, "pypath-core-complex-kegg"]], "pypath.core.complex.Pdb": [[115, "pypath-core-complex-pdb"]], "pypath.core.complex.Signor": [[116, "pypath-core-complex-signor"]], "pypath.core.complex.Spike": [[117, "pypath-core-complex-spike"]], "pypath.core.complex.all_complexes": [[118, "pypath-core-complex-all-complexes"]], "pypath.core.complex.get_db": [[119, "pypath-core-complex-get-db"]], "pypath.core.complex.init_db": [[120, "pypath-core-complex-init-db"]], "pypath.core.entity": [[121, "module-pypath.core.entity"]], "pypath.core.entity.Entity": [[122, "pypath-core-entity-entity"]], "pypath.core.entity.EntityKey": [[123, "pypath-core-entity-entitykey"]], "pypath.core.entity.EntityList": [[124, "pypath-core-entity-entitylist"]], "pypath.core.enz_sub": [[125, "module-pypath.core.enz_sub"]], "pypath.core.enz_sub.EnzymeSubstrateAggregator": [[126, "pypath-core-enz-sub-enzymesubstrateaggregator"]], "pypath.core.enz_sub.EnzymeSubstrateOrthologyProcessor": [[127, "pypath-core-enz-sub-enzymesubstrateorthologyprocessor"]], "pypath.core.enz_sub.EnzymeSubstrateProcessor": [[128, "pypath-core-enz-sub-enzymesubstrateprocessor"]], "pypath.core.enz_sub.get_db": [[129, "pypath-core-enz-sub-get-db"]], "pypath.core.enz_sub.init_db": [[130, "pypath-core-enz-sub-init-db"]], "pypath.core.evidence": [[131, "module-pypath.core.evidence"]], "pypath.core.evidence.Evidence": [[132, "pypath-core-evidence-evidence"]], "pypath.core.evidence.Evidences": [[133, "pypath-core-evidence-evidences"]], "pypath.core.interaction": [[134, "module-pypath.core.interaction"]], "pypath.core.interaction.Interaction": [[135, "pypath-core-interaction-interaction"]], "pypath.core.interaction.InteractionDataFrameRecord": [[136, "pypath-core-interaction-interactiondataframerecord"]], "pypath.core.interaction.InteractionKey": [[137, "pypath-core-interaction-interactionkey"]], "pypath.core.intercell": [[138, "module-pypath.core.intercell"]], "pypath.core.intercell.IntercellAnnotation": [[139, "pypath-core-intercell-intercellannotation"]], "pypath.core.intercell.get_db": [[140, "pypath-core-intercell-get-db"]], "pypath.core.intercell.init_db": [[141, "pypath-core-intercell-init-db"]], "pypath.core.intercell_annot": [[142, "module-pypath.core.intercell_annot"]], "pypath.core.intercell_annot.excludes": [[143, "pypath-core-intercell-annot-excludes"]], "pypath.core.network": [[144, "module-pypath.core.network"]], "pypath.core.network.Network": [[145, "pypath-core-network-network"]], "pypath.core.network.NetworkEntityCollection": [[146, "pypath-core-network-networkentitycollection"]], "pypath.core.network.NetworkStatsRecord": [[147, "pypath-core-network-networkstatsrecord"]], "pypath.core.network.get_db": [[148, "pypath-core-network-get-db"]], "pypath.core.network.init_db": [[149, "pypath-core-network-init-db"]], "pypath.data": [[150, "module-pypath.data"]], "pypath.disclaimer": [[151, "pypath-disclaimer"]], "pypath.info": [[152, "pypath-info"]], "pypath.inputs": [[153, "module-pypath.inputs"]], "pypath.inputs.abs": [[154, "module-pypath.inputs.abs"]], "pypath.inputs.abs.abs_interactions": [[155, "pypath-inputs-abs-abs-interactions"]], "pypath.inputs.acsn": [[156, "module-pypath.inputs.acsn"]], "pypath.inputs.acsn.acsn_interactions": [[157, "pypath-inputs-acsn-acsn-interactions"]], "pypath.inputs.acsn.acsn_interactions_sif": [[158, "pypath-inputs-acsn-acsn-interactions-sif"]], "pypath.inputs.adhesome": [[159, "module-pypath.inputs.adhesome"]], "pypath.inputs.adhesome.adhesome_annotations": [[160, "pypath-inputs-adhesome-adhesome-annotations"]], "pypath.inputs.adhesome.adhesome_interactions": [[161, "pypath-inputs-adhesome-adhesome-interactions"]], "pypath.inputs.adrecs": [[162, "module-pypath.inputs.adrecs"]], "pypath.inputs.adrecs.AdrecsAdr": [[163, "pypath-inputs-adrecs-adrecsadr"]], "pypath.inputs.adrecs.AdrecsChildParent": [[164, "pypath-inputs-adrecs-adrecschildparent"]], "pypath.inputs.adrecs.AdrecsDrug": [[165, "pypath-inputs-adrecs-adrecsdrug"]], "pypath.inputs.adrecs.AdrecsDrugAdr": [[166, "pypath-inputs-adrecs-adrecsdrugadr"]], "pypath.inputs.adrecs.AdrecsTerm": [[167, "pypath-inputs-adrecs-adrecsterm"]], "pypath.inputs.adrecs.adrecs_adr_ontology": [[168, "pypath-inputs-adrecs-adrecs-adr-ontology"]], "pypath.inputs.adrecs.adrecs_drug_adr": [[169, "pypath-inputs-adrecs-adrecs-drug-adr"]], "pypath.inputs.adrecs.adrecs_drug_identifiers": [[170, "pypath-inputs-adrecs-adrecs-drug-identifiers"]], "pypath.inputs.adrecs.adrecs_hierarchy": [[171, "pypath-inputs-adrecs-adrecs-hierarchy"]], "pypath.inputs.almen2009": [[172, "module-pypath.inputs.almen2009"]], "pypath.inputs.almen2009.almen2009_annotations": [[173, "pypath-inputs-almen2009-almen2009-annotations"]], "pypath.inputs.baccin2019": [[174, "module-pypath.inputs.baccin2019"]], "pypath.inputs.baccin2019.baccin2019_annotations": [[175, "pypath-inputs-baccin2019-baccin2019-annotations"]], "pypath.inputs.baccin2019.baccin2019_interactions": [[176, "pypath-inputs-baccin2019-baccin2019-interactions"]], "pypath.inputs.biogps": [[177, "module-pypath.inputs.biogps"]], "pypath.inputs.biogps.BiogpsDataset": [[178, "pypath-inputs-biogps-biogpsdataset"]], "pypath.inputs.biogps.biogps_annotations": [[179, "pypath-inputs-biogps-biogps-annotations"]], "pypath.inputs.biogps.biogps_datasets": [[180, "pypath-inputs-biogps-biogps-datasets"]], "pypath.inputs.biogps.biogps_download": [[181, "pypath-inputs-biogps-biogps-download"]], "pypath.inputs.biogps.biogps_download_all": [[182, "pypath-inputs-biogps-biogps-download-all"]], "pypath.inputs.biogrid": [[183, "module-pypath.inputs.biogrid"]], "pypath.inputs.biogrid.biogrid_all_interactions": [[184, "pypath-inputs-biogrid-biogrid-all-interactions"]], "pypath.inputs.biogrid.biogrid_interactions": [[185, "pypath-inputs-biogrid-biogrid-interactions"]], "pypath.inputs.biomart": [[186, "module-pypath.inputs.biomart"]], "pypath.inputs.biomart.biomart_homology": [[187, "pypath-inputs-biomart-biomart-homology"]], "pypath.inputs.biomart.biomart_microarray": [[188, "pypath-inputs-biomart-biomart-microarray"]], "pypath.inputs.biomart.biomart_microarray_types": [[189, "pypath-inputs-biomart-biomart-microarray-types"]], "pypath.inputs.biomart.biomart_microarrays": [[190, "pypath-inputs-biomart-biomart-microarrays"]], "pypath.inputs.biomart.biomart_query": [[191, "pypath-inputs-biomart-biomart-query"]], "pypath.inputs.biomodels": [[192, "module-pypath.inputs.biomodels"]], "pypath.inputs.biomodels.download_single_model": [[193, "pypath-inputs-biomodels-download-single-model"]], "pypath.inputs.biomodels.get_all_models": [[194, "pypath-inputs-biomodels-get-all-models"]], "pypath.inputs.biomodels.get_biomodels": [[195, "pypath-inputs-biomodels-get-biomodels"]], "pypath.inputs.biomodels.get_biomodels_req": [[196, "pypath-inputs-biomodels-get-biomodels-req"]], "pypath.inputs.biomodels.get_single_model": [[197, "pypath-inputs-biomodels-get-single-model"]], "pypath.inputs.ca1": [[198, "module-pypath.inputs.ca1"]], "pypath.inputs.ca1.ca1_interactions": [[199, "pypath-inputs-ca1-ca1-interactions"]], "pypath.inputs.cancercellmap": [[200, "module-pypath.inputs.cancercellmap"]], "pypath.inputs.cancercellmap.ccmap_interactions": [[201, "pypath-inputs-cancercellmap-ccmap-interactions"]], "pypath.inputs.cancerdrugsdb": [[202, "module-pypath.inputs.cancerdrugsdb"]], "pypath.inputs.cancerdrugsdb.cancerdrugsdb_annotations": [[203, "pypath-inputs-cancerdrugsdb-cancerdrugsdb-annotations"]], "pypath.inputs.cancerdrugsdb.cancerdrugsdb_download": [[204, "pypath-inputs-cancerdrugsdb-cancerdrugsdb-download"]], "pypath.inputs.cancerdrugsdb.cancerdrugsdb_interactions": [[205, "pypath-inputs-cancerdrugsdb-cancerdrugsdb-interactions"]], "pypath.inputs.cancersea": [[206, "module-pypath.inputs.cancersea"]], "pypath.inputs.cancersea.cancersea_annotations": [[207, "pypath-inputs-cancersea-cancersea-annotations"]], "pypath.inputs.cell": [[208, "module-pypath.inputs.cell"]], "pypath.inputs.cell.cell_supplementary": [[209, "pypath-inputs-cell-cell-supplementary"]], "pypath.inputs.cellcall": [[210, "module-pypath.inputs.cellcall"]], "pypath.inputs.cellcall.cellcall_annotations": [[211, "pypath-inputs-cellcall-cellcall-annotations"]], "pypath.inputs.cellcall.cellcall_download": [[212, "pypath-inputs-cellcall-cellcall-download"]], "pypath.inputs.cellcall.cellcall_download_all": [[213, "pypath-inputs-cellcall-cellcall-download-all"]], "pypath.inputs.cellcall.cellcall_interactions": [[214, "pypath-inputs-cellcall-cellcall-interactions"]], "pypath.inputs.cellcellinteractions": [[215, "module-pypath.inputs.cellcellinteractions"]], "pypath.inputs.cellcellinteractions.cellcellinteractions_annotations": [[216, "pypath-inputs-cellcellinteractions-cellcellinteractions-annotations"]], "pypath.inputs.cellchatdb": [[217, "module-pypath.inputs.cellchatdb"]], "pypath.inputs.cellchatdb.cellchatdb_annotations": [[218, "pypath-inputs-cellchatdb-cellchatdb-annotations"]], "pypath.inputs.cellchatdb.cellchatdb_cofactors": [[219, "pypath-inputs-cellchatdb-cellchatdb-cofactors"]], "pypath.inputs.cellchatdb.cellchatdb_complexes": [[220, "pypath-inputs-cellchatdb-cellchatdb-complexes"]], "pypath.inputs.cellchatdb.cellchatdb_download": [[221, "pypath-inputs-cellchatdb-cellchatdb-download"]], "pypath.inputs.cellchatdb.cellchatdb_interactions": [[222, "pypath-inputs-cellchatdb-cellchatdb-interactions"]], "pypath.inputs.cellinker": [[223, "module-pypath.inputs.cellinker"]], "pypath.inputs.cellinker.CellinkerInteraction": [[224, "pypath-inputs-cellinker-cellinkerinteraction"]], "pypath.inputs.cellinker.cellinker_annotations": [[225, "pypath-inputs-cellinker-cellinker-annotations"]], "pypath.inputs.cellinker.cellinker_complex_annotations": [[226, "pypath-inputs-cellinker-cellinker-complex-annotations"]], "pypath.inputs.cellinker.cellinker_complexes": [[227, "pypath-inputs-cellinker-cellinker-complexes"]], "pypath.inputs.cellinker.cellinker_complexes_raw": [[228, "pypath-inputs-cellinker-cellinker-complexes-raw"]], "pypath.inputs.cellinker.cellinker_lr_interactions": [[229, "pypath-inputs-cellinker-cellinker-lr-interactions"]], "pypath.inputs.cellinker.cellinker_lr_interactions_raw": [[230, "pypath-inputs-cellinker-cellinker-lr-interactions-raw"]], "pypath.inputs.cellinker.cellinker_protein_annotations": [[231, "pypath-inputs-cellinker-cellinker-protein-annotations"]], "pypath.inputs.cellinker.cellinker_smol_interactions": [[232, "pypath-inputs-cellinker-cellinker-smol-interactions"]], "pypath.inputs.cellinker.cellinker_smol_interactions_raw": [[233, "pypath-inputs-cellinker-cellinker-smol-interactions-raw"]], "pypath.inputs.cellinker.components_to_complex": [[234, "pypath-inputs-cellinker-components-to-complex"]], "pypath.inputs.cellphonedb": [[235, "module-pypath.inputs.cellphonedb"]], "pypath.inputs.cellphonedb.CellPhoneDBAnnotation": [[236, "pypath-inputs-cellphonedb-cellphonedbannotation"]], "pypath.inputs.cellphonedb.cellphonedb_complex_annotations": [[237, "pypath-inputs-cellphonedb-cellphonedb-complex-annotations"]], "pypath.inputs.cellphonedb.cellphonedb_complexes": [[238, "pypath-inputs-cellphonedb-cellphonedb-complexes"]], "pypath.inputs.cellphonedb.cellphonedb_interactions": [[239, "pypath-inputs-cellphonedb-cellphonedb-interactions"]], "pypath.inputs.cellphonedb.cellphonedb_ligands_receptors": [[240, "pypath-inputs-cellphonedb-cellphonedb-ligands-receptors"]], "pypath.inputs.cellphonedb.cellphonedb_protein_annotations": [[241, "pypath-inputs-cellphonedb-cellphonedb-protein-annotations"]], "pypath.inputs.celltalkdb": [[242, "module-pypath.inputs.celltalkdb"]], "pypath.inputs.celltalkdb.celltalkdb_annotations": [[243, "pypath-inputs-celltalkdb-celltalkdb-annotations"]], "pypath.inputs.celltalkdb.celltalkdb_download": [[244, "pypath-inputs-celltalkdb-celltalkdb-download"]], "pypath.inputs.celltalkdb.celltalkdb_interactions": [[245, "pypath-inputs-celltalkdb-celltalkdb-interactions"]], "pypath.inputs.celltypist": [[246, "module-pypath.inputs.celltypist"]], "pypath.inputs.celltypist.celltypist_annotations": [[247, "pypath-inputs-celltypist-celltypist-annotations"]], "pypath.inputs.chembl": [[248, "module-pypath.inputs.chembl"]], "pypath.inputs.chembl.chembl_activities": [[249, "pypath-inputs-chembl-chembl-activities"]], "pypath.inputs.chembl.chembl_assays": [[250, "pypath-inputs-chembl-chembl-assays"]], "pypath.inputs.chembl.chembl_documents": [[251, "pypath-inputs-chembl-chembl-documents"]], "pypath.inputs.chembl.chembl_drug_indications": [[252, "pypath-inputs-chembl-chembl-drug-indications"]], "pypath.inputs.chembl.chembl_mechanisms": [[253, "pypath-inputs-chembl-chembl-mechanisms"]], "pypath.inputs.chembl.chembl_molecules": [[254, "pypath-inputs-chembl-chembl-molecules"]], "pypath.inputs.chembl.chembl_targets": [[255, "pypath-inputs-chembl-chembl-targets"]], "pypath.inputs.clinvar": [[256, "module-pypath.inputs.clinvar"]], "pypath.inputs.clinvar.clinvar_citations": [[257, "pypath-inputs-clinvar-clinvar-citations"]], "pypath.inputs.clinvar.clinvar_raw": [[258, "pypath-inputs-clinvar-clinvar-raw"]], "pypath.inputs.collectri": [[259, "module-pypath.inputs.collectri"]], "pypath.inputs.collectri.collectri_interactions": [[260, "pypath-inputs-collectri-collectri-interactions"]], "pypath.inputs.collectri.collectri_raw": [[261, "pypath-inputs-collectri-collectri-raw"]], "pypath.inputs.common": [[262, "module-pypath.inputs.common"]], "pypath.inputs.common.csv_sep_change": [[263, "pypath-inputs-common-csv-sep-change"]], "pypath.inputs.common.glom_fields": [[264, "pypath-inputs-common-glom-fields"]], "pypath.inputs.common.json_extract": [[265, "pypath-inputs-common-json-extract"]], "pypath.inputs.common.json_read": [[266, "pypath-inputs-common-json-read"]], "pypath.inputs.common.read_table": [[267, "pypath-inputs-common-read-table"]], "pypath.inputs.common.read_xls": [[268, "pypath-inputs-common-read-xls"]], "pypath.inputs.compath": [[269, "module-pypath.inputs.compath"]], "pypath.inputs.compath.compath_mappings": [[270, "pypath-inputs-compath-compath-mappings"]], "pypath.inputs.compleat": [[271, "module-pypath.inputs.compleat"]], "pypath.inputs.compleat.compleat_complexes": [[272, "pypath-inputs-compleat-compleat-complexes"]], "pypath.inputs.compleat.compleat_raw": [[273, "pypath-inputs-compleat-compleat-raw"]], "pypath.inputs.complexportal": [[274, "module-pypath.inputs.complexportal"]], "pypath.inputs.complexportal.complexportal_complexes": [[275, "pypath-inputs-complexportal-complexportal-complexes"]], "pypath.inputs.comppi": [[276, "module-pypath.inputs.comppi"]], "pypath.inputs.comppi.comppi_interaction_locations": [[277, "pypath-inputs-comppi-comppi-interaction-locations"]], "pypath.inputs.comppi.comppi_locations": [[278, "pypath-inputs-comppi-comppi-locations"]], "pypath.inputs.connectomedb": [[279, "module-pypath.inputs.connectomedb"]], "pypath.inputs.connectomedb.connectomedb_annotations": [[280, "pypath-inputs-connectomedb-connectomedb-annotations"]], "pypath.inputs.connectomedb.connectomedb_interactions": [[281, "pypath-inputs-connectomedb-connectomedb-interactions"]], "pypath.inputs.corum": [[282, "module-pypath.inputs.corum"]], "pypath.inputs.corum.corum_complexes": [[283, "pypath-inputs-corum-corum-complexes"]], "pypath.inputs.cosmic": [[284, "module-pypath.inputs.cosmic"]], "pypath.inputs.cosmic.cancer_gene_census_annotations": [[285, "pypath-inputs-cosmic-cancer-gene-census-annotations"]], "pypath.inputs.cpad": [[286, "module-pypath.inputs.cpad"]], "pypath.inputs.cpad.cpad_annotations": [[287, "pypath-inputs-cpad-cpad-annotations"]], "pypath.inputs.cpad.cpad_pathway_cancer": [[288, "pypath-inputs-cpad-cpad-pathway-cancer"]], "pypath.inputs.cpad.get_cpad": [[289, "pypath-inputs-cpad-get-cpad"]], "pypath.inputs.cpdb": [[290, "module-pypath.inputs.cpdb"]], "pypath.inputs.cpdb.cpdb_interactions": [[291, "pypath-inputs-cpdb-cpdb-interactions"]], "pypath.inputs.cpdb.cpdb_interactions_ltp": [[292, "pypath-inputs-cpdb-cpdb-interactions-ltp"]], "pypath.inputs.credentials": [[293, "module-pypath.inputs.credentials"]], "pypath.inputs.credentials.credentials": [[294, "pypath-inputs-credentials-credentials"]], "pypath.inputs.csa": [[295, "module-pypath.inputs.csa"]], "pypath.inputs.csa.get_csa": [[296, "pypath-inputs-csa-get-csa"]], "pypath.inputs.cspa": [[297, "module-pypath.inputs.cspa"]], "pypath.inputs.cspa.cspa_annotations": [[298, "pypath-inputs-cspa-cspa-annotations"]], "pypath.inputs.cspa.cspa_cell_type_annotations": [[299, "pypath-inputs-cspa-cspa-cell-type-annotations"]], "pypath.inputs.cspa.cspa_cell_types": [[300, "pypath-inputs-cspa-cspa-cell-types"]], "pypath.inputs.ctdbase": [[301, "module-pypath.inputs.ctdbase"]], "pypath.inputs.ctdbase.ctdbase_relations": [[302, "pypath-inputs-ctdbase-ctdbase-relations"]], "pypath.inputs.ctdbase.ctdbase_vocabulary": [[303, "pypath-inputs-ctdbase-ctdbase-vocabulary"]], "pypath.inputs.cytosig": [[304, "module-pypath.inputs.cytosig"]], "pypath.inputs.cytosig.cytosig_annotations": [[305, "pypath-inputs-cytosig-cytosig-annotations"]], "pypath.inputs.cytosig.cytosig_df": [[306, "pypath-inputs-cytosig-cytosig-df"]], "pypath.inputs.dbptm": [[307, "module-pypath.inputs.dbptm"]], "pypath.inputs.dbptm.dbptm_enzyme_substrate": [[308, "pypath-inputs-dbptm-dbptm-enzyme-substrate"]], "pypath.inputs.dbptm.dbptm_enzyme_substrate_old": [[309, "pypath-inputs-dbptm-dbptm-enzyme-substrate-old"]], "pypath.inputs.dbptm.dbptm_interactions": [[310, "pypath-inputs-dbptm-dbptm-interactions"]], "pypath.inputs.ddinter": [[311, "module-pypath.inputs.ddinter"]], "pypath.inputs.ddinter.ddinter_drug_interactions": [[312, "pypath-inputs-ddinter-ddinter-drug-interactions"]], "pypath.inputs.ddinter.ddinter_identifiers": [[313, "pypath-inputs-ddinter-ddinter-identifiers"]], "pypath.inputs.ddinter.ddinter_interactions": [[314, "pypath-inputs-ddinter-ddinter-interactions"]], "pypath.inputs.ddinter.ddinter_mappings": [[315, "pypath-inputs-ddinter-ddinter-mappings"]], "pypath.inputs.ddinter.ddinter_n_drugs": [[316, "pypath-inputs-ddinter-ddinter-n-drugs"]], "pypath.inputs.deathdomain": [[317, "module-pypath.inputs.deathdomain"]], "pypath.inputs.deathdomain.deathdomain_interactions": [[318, "pypath-inputs-deathdomain-deathdomain-interactions"]], "pypath.inputs.deathdomain.deathdomain_interactions_rescued": [[319, "pypath-inputs-deathdomain-deathdomain-interactions-rescued"]], "pypath.inputs.depod": [[320, "module-pypath.inputs.depod"]], "pypath.inputs.depod.depod_enzyme_substrate": [[321, "pypath-inputs-depod-depod-enzyme-substrate"]], "pypath.inputs.depod.depod_interactions": [[322, "pypath-inputs-depod-depod-interactions"]], "pypath.inputs.dgidb": [[323, "module-pypath.inputs.dgidb"]], "pypath.inputs.dgidb.dgidb_annotations": [[324, "pypath-inputs-dgidb-dgidb-annotations"]], "pypath.inputs.dgidb.dgidb_interactions": [[325, "pypath-inputs-dgidb-dgidb-interactions"]], "pypath.inputs.dgidb.get_dgidb_old": [[326, "pypath-inputs-dgidb-get-dgidb-old"]], "pypath.inputs.dip": [[327, "module-pypath.inputs.dip"]], "pypath.inputs.dip.dip_interactions": [[328, "pypath-inputs-dip-dip-interactions"]], "pypath.inputs.dip.dip_login": [[329, "pypath-inputs-dip-dip-login"]], "pypath.inputs.diseases": [[330, "module-pypath.inputs.diseases"]], "pypath.inputs.diseases.diseases_general": [[331, "pypath-inputs-diseases-diseases-general"]], "pypath.inputs.diseases.experiments_filtered": [[332, "pypath-inputs-diseases-experiments-filtered"]], "pypath.inputs.diseases.experiments_full": [[333, "pypath-inputs-diseases-experiments-full"]], "pypath.inputs.diseases.knowledge_filtered": [[334, "pypath-inputs-diseases-knowledge-filtered"]], "pypath.inputs.diseases.knowledge_full": [[335, "pypath-inputs-diseases-knowledge-full"]], "pypath.inputs.diseases.textmining_filtered": [[336, "pypath-inputs-diseases-textmining-filtered"]], "pypath.inputs.diseases.textmining_full": [[337, "pypath-inputs-diseases-textmining-full"]], "pypath.inputs.domino": [[338, "module-pypath.inputs.domino"]], "pypath.inputs.domino.domino_ddi": [[339, "pypath-inputs-domino-domino-ddi"]], "pypath.inputs.domino.domino_enzsub": [[340, "pypath-inputs-domino-domino-enzsub"]], "pypath.inputs.domino.domino_interactions": [[341, "pypath-inputs-domino-domino-interactions"]], "pypath.inputs.domino.get_domino": [[342, "pypath-inputs-domino-get-domino"]], "pypath.inputs.dorothea": [[343, "module-pypath.inputs.dorothea"]], "pypath.inputs.dorothea.DorotheaInteraction": [[344, "pypath-inputs-dorothea-dorotheainteraction"]], "pypath.inputs.dorothea.dorothea_full_raw": [[345, "pypath-inputs-dorothea-dorothea-full-raw"]], "pypath.inputs.dorothea.dorothea_interactions": [[346, "pypath-inputs-dorothea-dorothea-interactions"]], "Details": [[346, "details"], [347, "details"], [348, "details"], [350, "details"], [352, "details"], [353, "details"]], "pypath.inputs.dorothea.dorothea_interactions_old": [[347, "pypath-inputs-dorothea-dorothea-interactions-old"]], "pypath.inputs.dorothea.dorothea_old_csv": [[348, "pypath-inputs-dorothea-dorothea-old-csv"]], "pypath.inputs.dorothea.dorothea_rda_raw": [[349, "pypath-inputs-dorothea-dorothea-rda-raw"]], "pypath.inputs.dorothea.get_dorothea_old": [[350, "pypath-inputs-dorothea-get-dorothea-old"]], "pypath.inputs.dorothea.get_tfregulons": [[351, "pypath-inputs-dorothea-get-tfregulons"]], "pypath.inputs.dorothea.tfregulons_interactions": [[352, "pypath-inputs-dorothea-tfregulons-interactions"]], "pypath.inputs.dorothea.tfregulons_interactions_old": [[353, "pypath-inputs-dorothea-tfregulons-interactions-old"]], "pypath.inputs.drugbank": [[354, "module-pypath.inputs.drugbank"]], "pypath.inputs.drugbank.DrugbankFull": [[355, "pypath-inputs-drugbank-drugbankfull"]], "pypath.inputs.drugbank.drugbank_annotations": [[356, "pypath-inputs-drugbank-drugbank-annotations"]], "pypath.inputs.drugbank.drugbank_drugs": [[357, "pypath-inputs-drugbank-drugbank-drugs"]], "pypath.inputs.drugbank.drugbank_interactions": [[358, "pypath-inputs-drugbank-drugbank-interactions"]], "pypath.inputs.drugbank.drugbank_mapping": [[359, "pypath-inputs-drugbank-drugbank-mapping"]], "pypath.inputs.drugbank.drugbank_raw_interactions": [[360, "pypath-inputs-drugbank-drugbank-raw-interactions"]], "pypath.inputs.drugcentral": [[361, "module-pypath.inputs.drugcentral"]], "pypath.inputs.drugcentral.drugcentral_drugs": [[362, "pypath-inputs-drugcentral-drugcentral-drugs"]], "pypath.inputs.drugcentral.drugcentral_interactions": [[363, "pypath-inputs-drugcentral-drugcentral-interactions"]], "pypath.inputs.drugcentral.drugcentral_mapping": [[364, "pypath-inputs-drugcentral-drugcentral-mapping"]], "pypath.inputs.ebi": [[365, "module-pypath.inputs.ebi"]], "pypath.inputs.ebi.ebi_rest": [[366, "pypath-inputs-ebi-ebi-rest"]], "pypath.inputs.elm": [[367, "module-pypath.inputs.elm"]], "pypath.inputs.elm.elm_classes": [[368, "pypath-inputs-elm-elm-classes"]], "pypath.inputs.elm.elm_domains": [[369, "pypath-inputs-elm-elm-domains"]], "pypath.inputs.elm.elm_instances": [[370, "pypath-inputs-elm-elm-instances"]], "pypath.inputs.elm.elm_interactions": [[371, "pypath-inputs-elm-elm-interactions"]], "pypath.inputs.embopress": [[372, "module-pypath.inputs.embopress"]], "pypath.inputs.embopress.embopress_supplementary": [[373, "pypath-inputs-embopress-embopress-supplementary"]], "pypath.inputs.embrace": [[374, "module-pypath.inputs.embrace"]], "pypath.inputs.embrace.embrace_annotations": [[375, "pypath-inputs-embrace-embrace-annotations"]], "pypath.inputs.embrace.embrace_interactions": [[376, "pypath-inputs-embrace-embrace-interactions"]], "pypath.inputs.embrace.embrace_raw": [[377, "pypath-inputs-embrace-embrace-raw"]], "pypath.inputs.embrace.embrace_translated": [[378, "pypath-inputs-embrace-embrace-translated"]], "pypath.inputs.encode": [[379, "module-pypath.inputs.encode"]], "pypath.inputs.encode.encode_tf_mirna_interactions": [[380, "pypath-inputs-encode-encode-tf-mirna-interactions"]], "pypath.inputs.ensembl": [[381, "module-pypath.inputs.ensembl"]], "pypath.inputs.ensembl.ensembl_organisms": [[382, "pypath-inputs-ensembl-ensembl-organisms"]], "pypath.inputs.eutils": [[383, "module-pypath.inputs.eutils"]], "pypath.inputs.eutils.esummary": [[384, "pypath-inputs-eutils-esummary"]], "pypath.inputs.exocarta": [[385, "module-pypath.inputs.exocarta"]], "pypath.inputs.exocarta.get_exocarta": [[386, "pypath-inputs-exocarta-get-exocarta"]], "pypath.inputs.exocarta.get_vesiclepedia": [[387, "pypath-inputs-exocarta-get-vesiclepedia"]], "pypath.inputs.expasy": [[388, "module-pypath.inputs.expasy"]], "pypath.inputs.expasy.expasy_enzyme_classes": [[389, "pypath-inputs-expasy-expasy-enzyme-classes"]], "pypath.inputs.expasy.expasy_enzymes": [[390, "pypath-inputs-expasy-expasy-enzymes"]], "pypath.inputs.genecards": [[391, "module-pypath.inputs.genecards"]], "pypath.inputs.genecards.genecards_datasheet": [[392, "pypath-inputs-genecards-genecards-datasheet"]], "pypath.inputs.genecards.genecards_soup": [[393, "pypath-inputs-genecards-genecards-soup"]], "pypath.inputs.genecards.genecards_summaries": [[394, "pypath-inputs-genecards-genecards-summaries"]], "pypath.inputs.get_method": [[395, "pypath-inputs-get-method"]], "pypath.inputs.go": [[396, "module-pypath.inputs.go"]], "pypath.inputs.go.get_go_desc": [[397, "pypath-inputs-go-get-go-desc"]], "pypath.inputs.go.get_go_quick": [[398, "pypath-inputs-go-get-go-quick"]], "pypath.inputs.go.get_goslim": [[399, "pypath-inputs-go-get-goslim"]], "pypath.inputs.go.go_ancestors": [[400, "pypath-inputs-go-go-ancestors"]], "pypath.inputs.go.go_ancestors_goose": [[401, "pypath-inputs-go-go-ancestors-goose"]], "pypath.inputs.go.go_ancestors_quickgo": [[402, "pypath-inputs-go-go-ancestors-quickgo"]], "pypath.inputs.go.go_annotations": [[403, "pypath-inputs-go-go-annotations"]], "pypath.inputs.go.go_annotations_all": [[404, "pypath-inputs-go-go-annotations-all"]], "pypath.inputs.go.go_annotations_goa": [[405, "pypath-inputs-go-go-annotations-goa"]], "pypath.inputs.go.go_annotations_goose": [[406, "pypath-inputs-go-go-annotations-goose"]], "pypath.inputs.go.go_annotations_quickgo": [[407, "pypath-inputs-go-go-annotations-quickgo"]], "pypath.inputs.go.go_annotations_solr": [[408, "pypath-inputs-go-go-annotations-solr"]], "pypath.inputs.go.go_annotations_uniprot": [[409, "pypath-inputs-go-go-annotations-uniprot"]], "pypath.inputs.go.go_descendants": [[410, "pypath-inputs-go-go-descendants"]], "pypath.inputs.go.go_descendants_goose": [[411, "pypath-inputs-go-go-descendants-goose"]], "pypath.inputs.go.go_descendants_quickgo": [[412, "pypath-inputs-go-go-descendants-quickgo"]], "pypath.inputs.go.go_descendants_to_ancestors": [[413, "pypath-inputs-go-go-descendants-to-ancestors"]], "pypath.inputs.go.go_terms": [[414, "pypath-inputs-go-go-terms"]], "pypath.inputs.go.go_terms_goose": [[415, "pypath-inputs-go-go-terms-goose"]], "pypath.inputs.go.go_terms_quickgo": [[416, "pypath-inputs-go-go-terms-quickgo"]], "pypath.inputs.go.go_terms_solr": [[417, "pypath-inputs-go-go-terms-solr"]], "pypath.inputs.gpcrdb": [[418, "module-pypath.inputs.gpcrdb"]], "pypath.inputs.gpcrdb.gpcrdb_annotations": [[419, "pypath-inputs-gpcrdb-gpcrdb-annotations"]], "pypath.inputs.graphviz": [[420, "module-pypath.inputs.graphviz"]], "pypath.inputs.graphviz.graphviz_attrs": [[421, "pypath-inputs-graphviz-graphviz-attrs"]], "pypath.inputs.guide2pharma": [[422, "module-pypath.inputs.guide2pharma"]], "pypath.inputs.guide2pharma.guide2pharma_complexes": [[423, "pypath-inputs-guide2pharma-guide2pharma-complexes"]], "pypath.inputs.guide2pharma.guide2pharma_download": [[424, "pypath-inputs-guide2pharma-guide2pharma-download"]], "pypath.inputs.guide2pharma.guide2pharma_interactions": [[425, "pypath-inputs-guide2pharma-guide2pharma-interactions"]], "pypath.inputs.gutmgene": [[426, "module-pypath.inputs.gutmgene"]], "pypath.inputs.gutmgene.GutmgeneAnnotation": [[427, "pypath-inputs-gutmgene-gutmgeneannotation"]], "pypath.inputs.gutmgene.GutmgeneRaw": [[428, "pypath-inputs-gutmgene-gutmgeneraw"]], "pypath.inputs.gutmgene.gutmgene_annotations": [[429, "pypath-inputs-gutmgene-gutmgene-annotations"]], "pypath.inputs.gutmgene.gutmgene_raw": [[430, "pypath-inputs-gutmgene-gutmgene-raw"]], "pypath.inputs.havugimana": [[431, "module-pypath.inputs.havugimana"]], "pypath.inputs.havugimana.get_havugimana": [[432, "pypath-inputs-havugimana-get-havugimana"]], "pypath.inputs.havugimana.havugimana_complexes": [[433, "pypath-inputs-havugimana-havugimana-complexes"]], "pypath.inputs.hgnc": [[434, "module-pypath.inputs.hgnc"]], "pypath.inputs.hgnc.hgnc_genegroups": [[435, "pypath-inputs-hgnc-hgnc-genegroups"]], "pypath.inputs.hippie": [[436, "module-pypath.inputs.hippie"]], "pypath.inputs.hippie.hippie_interactions": [[437, "pypath-inputs-hippie-hippie-interactions"]], "pypath.inputs.hmdb": [[438, "module-pypath.inputs.hmdb"]], "pypath.inputs.hmdb.common": [[439, "module-pypath.inputs.hmdb.common"]], "pypath.inputs.hmdb.common.iter": [[440, "pypath-inputs-hmdb-common-iter"]], "pypath.inputs.hmdb.common.mapping": [[441, "pypath-inputs-hmdb-common-mapping"]], "pypath.inputs.hmdb.common.raw": [[442, "pypath-inputs-hmdb-common-raw"]], "pypath.inputs.hmdb.common.table": [[443, "pypath-inputs-hmdb-common-table"]], "pypath.inputs.hmdb.metabolites": [[444, "module-pypath.inputs.hmdb.metabolites"]], "pypath.inputs.hmdb.metabolites.iter": [[445, "pypath-inputs-hmdb-metabolites-iter"]], "pypath.inputs.hmdb.metabolites.mapping": [[446, "pypath-inputs-hmdb-metabolites-mapping"]], "pypath.inputs.hmdb.metabolites.raw": [[447, "pypath-inputs-hmdb-metabolites-raw"]], "pypath.inputs.hmdb.metabolites.table": [[448, "pypath-inputs-hmdb-metabolites-table"]], "pypath.inputs.hmdb.proteins": [[449, "module-pypath.inputs.hmdb.proteins"]], "pypath.inputs.hmdb.proteins.iter": [[450, "pypath-inputs-hmdb-proteins-iter"]], "pypath.inputs.hmdb.proteins.mapping": [[451, "pypath-inputs-hmdb-proteins-mapping"]], "pypath.inputs.hmdb.proteins.raw": [[452, "pypath-inputs-hmdb-proteins-raw"]], "pypath.inputs.hmdb.proteins.table": [[453, "pypath-inputs-hmdb-proteins-table"]], "pypath.inputs.hmdb.schema": [[454, "module-pypath.inputs.hmdb.schema"]], "pypath.inputs.hmdb.schema.common": [[455, "module-pypath.inputs.hmdb.schema.common"]], "pypath.inputs.hmdb.schema.common.Field": [[456, "pypath-inputs-hmdb-schema-common-field"]], "pypath.inputs.hmdb.schema.metabolites": [[457, "module-pypath.inputs.hmdb.schema.metabolites"]], "pypath.inputs.hmdb.schema.proteins": [[458, "module-pypath.inputs.hmdb.schema.proteins"]], "pypath.inputs.hmdb.structures": [[459, "module-pypath.inputs.hmdb.structures"]], "pypath.inputs.hmdb.structures.sdf": [[460, "pypath-inputs-hmdb-structures-sdf"]], "pypath.inputs.hmdb.visual": [[461, "module-pypath.inputs.hmdb.visual"]], "pypath.inputs.hmdb.visual.show_structure": [[462, "pypath-inputs-hmdb-visual-show-structure"]], "pypath.inputs.hmdb.visual.structure_svg": [[463, "pypath-inputs-hmdb-visual-structure-svg"]], "pypath.inputs.hmdb.xml": [[464, "module-pypath.inputs.hmdb.xml"]], "pypath.inputs.hmdb.xml.hmdb_xml": [[465, "pypath-inputs-hmdb-xml-hmdb-xml"]], "pypath.inputs.homologene": [[466, "module-pypath.inputs.homologene"]], "pypath.inputs.homologene.get_homologene": [[467, "pypath-inputs-homologene-get-homologene"]], "pypath.inputs.homologene.homologene_dict": [[468, "pypath-inputs-homologene-homologene-dict"]], "pypath.inputs.homologene.homologene_uniprot_dict": [[469, "pypath-inputs-homologene-homologene-uniprot-dict"]], "pypath.inputs.hpmr": [[470, "module-pypath.inputs.hpmr"]], "pypath.inputs.hpmr.HpmrInteraction": [[471, "pypath-inputs-hpmr-hpmrinteraction"]], "pypath.inputs.hpmr.get_hpmr": [[472, "pypath-inputs-hpmr-get-hpmr"]], "pypath.inputs.hpmr.hpmr_annotations": [[473, "pypath-inputs-hpmr-hpmr-annotations"]], "pypath.inputs.hpmr.hpmr_complexes": [[474, "pypath-inputs-hpmr-hpmr-complexes"]], "pypath.inputs.hpmr.hpmr_interactions": [[475, "pypath-inputs-hpmr-hpmr-interactions"]], "pypath.inputs.hpo": [[476, "module-pypath.inputs.hpo"]], "pypath.inputs.hpo.hpo_annotations": [[477, "pypath-inputs-hpo-hpo-annotations"]], "pypath.inputs.hpo.hpo_diseases": [[478, "pypath-inputs-hpo-hpo-diseases"]], "pypath.inputs.hpo.hpo_ontology": [[479, "pypath-inputs-hpo-hpo-ontology"]], "pypath.inputs.hpo.hpo_terms": [[480, "pypath-inputs-hpo-hpo-terms"]], "pypath.inputs.hprd": [[481, "module-pypath.inputs.hprd"]], "pypath.inputs.hprd.get_hprd": [[482, "pypath-inputs-hprd-get-hprd"]], "pypath.inputs.hprd.hprd_enzyme_substrate": [[483, "pypath-inputs-hprd-hprd-enzyme-substrate"]], "pypath.inputs.hprd.hprd_interactions": [[484, "pypath-inputs-hprd-hprd-interactions"]], "pypath.inputs.hprd.hprd_interactions_htp": [[485, "pypath-inputs-hprd-hprd-interactions-htp"]], "pypath.inputs.htri": [[486, "module-pypath.inputs.htri"]], "pypath.inputs.htri.htri_interactions": [[487, "pypath-inputs-htri-htri-interactions"]], "pypath.inputs.humancellmap": [[488, "module-pypath.inputs.humancellmap"]], "pypath.inputs.humancellmap.humancellmap_annotations": [[489, "pypath-inputs-humancellmap-humancellmap-annotations"]], "pypath.inputs.humap": [[490, "module-pypath.inputs.humap"]], "pypath.inputs.humap.humap2_complexes": [[491, "pypath-inputs-humap-humap2-complexes"]], "pypath.inputs.humap.humap_complexes": [[492, "pypath-inputs-humap-humap-complexes"]], "pypath.inputs.humsavar": [[493, "module-pypath.inputs.humsavar"]], "pypath.inputs.humsavar.uniprot_variants": [[494, "pypath-inputs-humsavar-uniprot-variants"]], "pypath.inputs.huri": [[495, "module-pypath.inputs.huri"]], "pypath.inputs.huri.hi_i_interactions": [[496, "pypath-inputs-huri-hi-i-interactions"]], "pypath.inputs.huri.hi_ii_interactions": [[497, "pypath-inputs-huri-hi-ii-interactions"]], "pypath.inputs.huri.hi_iii_old": [[498, "pypath-inputs-huri-hi-iii-old"]], "pypath.inputs.huri.hi_union_interactions": [[499, "pypath-inputs-huri-hi-union-interactions"]], "pypath.inputs.huri.huri_interactions": [[500, "pypath-inputs-huri-huri-interactions"]], "pypath.inputs.huri.lit_bm_13_interactions": [[501, "pypath-inputs-huri-lit-bm-13-interactions"]], "pypath.inputs.huri.lit_bm_17_interactions": [[502, "pypath-inputs-huri-lit-bm-17-interactions"]], "pypath.inputs.huri.lit_bm_interactions": [[503, "pypath-inputs-huri-lit-bm-interactions"]], "pypath.inputs.huri.rolland_hi_ii_14": [[504, "pypath-inputs-huri-rolland-hi-ii-14"]], "pypath.inputs.huri.vidal_hi_iii_old": [[505, "pypath-inputs-huri-vidal-hi-iii-old"]], "pypath.inputs.huri.yang2016_interactions": [[506, "pypath-inputs-huri-yang2016-interactions"]], "pypath.inputs.huri.yu2011_interactions": [[507, "pypath-inputs-huri-yu2011-interactions"]], "pypath.inputs.i3d": [[508, "module-pypath.inputs.i3d"]], "pypath.inputs.i3d.get_i3d": [[509, "pypath-inputs-i3d-get-i3d"]], "pypath.inputs.icellnet": [[510, "module-pypath.inputs.icellnet"]], "pypath.inputs.icellnet.IcellnetRecord": [[511, "pypath-inputs-icellnet-icellnetrecord"]], "pypath.inputs.icellnet.icellnet_annotations": [[512, "pypath-inputs-icellnet-icellnet-annotations"]], "pypath.inputs.icellnet.icellnet_complexes": [[513, "pypath-inputs-icellnet-icellnet-complexes"]], "pypath.inputs.icellnet.icellnet_interactions": [[514, "pypath-inputs-icellnet-icellnet-interactions"]], "pypath.inputs.ielm": [[515, "module-pypath.inputs.ielm"]], "pypath.inputs.ielm.get_ielm": [[516, "pypath-inputs-ielm-get-ielm"]], "pypath.inputs.ielm.get_ielm_huge": [[517, "pypath-inputs-ielm-get-ielm-huge"]], "pypath.inputs.imweb": [[518, "module-pypath.inputs.imweb"]], "pypath.inputs.imweb.get_imweb": [[519, "pypath-inputs-imweb-get-imweb"]], "pypath.inputs.imweb.get_imweb_req": [[520, "pypath-inputs-imweb-get-imweb-req"]], "pypath.inputs.innatedb": [[521, "module-pypath.inputs.innatedb"]], "pypath.inputs.innatedb.innatedb_interactions": [[522, "pypath-inputs-innatedb-innatedb-interactions"]], "pypath.inputs.instruct": [[523, "module-pypath.inputs.instruct"]], "pypath.inputs.instruct.get_instruct": [[524, "pypath-inputs-instruct-get-instruct"]], "pypath.inputs.instruct.get_instruct_offsets": [[525, "pypath-inputs-instruct-get-instruct-offsets"]], "pypath.inputs.intact": [[526, "module-pypath.inputs.intact"]], "pypath.inputs.intact.intact_interactions": [[527, "pypath-inputs-intact-intact-interactions"]], "pypath.inputs.integrins": [[528, "module-pypath.inputs.integrins"]], "pypath.inputs.integrins.get_integrins": [[529, "pypath-inputs-integrins-get-integrins"]], "pypath.inputs.interpro": [[530, "module-pypath.inputs.interpro"]], "pypath.inputs.interpro.interpro2go_annotations": [[531, "pypath-inputs-interpro-interpro2go-annotations"]], "pypath.inputs.interpro.interpro_annotations": [[532, "pypath-inputs-interpro-interpro-annotations"]], "pypath.inputs.interpro.interpro_entries": [[533, "pypath-inputs-interpro-interpro-entries"]], "pypath.inputs.interpro.interpro_xrefs": [[534, "pypath-inputs-interpro-interpro-xrefs"]], "pypath.inputs.intogen": [[535, "module-pypath.inputs.intogen"]], "pypath.inputs.intogen.intogen_annotations": [[536, "pypath-inputs-intogen-intogen-annotations"]], "pypath.inputs.ipi": [[537, "module-pypath.inputs.ipi"]], "pypath.inputs.ipi.ipi_uniprot": [[538, "pypath-inputs-ipi-ipi-uniprot"]], "pypath.inputs.iptmnet": [[539, "module-pypath.inputs.iptmnet"]], "pypath.inputs.iptmnet.IptmnetInteraction": [[540, "pypath-inputs-iptmnet-iptmnetinteraction"]], "pypath.inputs.iptmnet.iptmnet_interactions": [[541, "pypath-inputs-iptmnet-iptmnet-interactions"]], "pypath.inputs.italk": [[542, "module-pypath.inputs.italk"]], "pypath.inputs.italk.italk_annotations": [[543, "pypath-inputs-italk-italk-annotations"]], "pypath.inputs.italk.italk_interactions": [[544, "pypath-inputs-italk-italk-interactions"]], "pypath.inputs.italk.italk_raw": [[545, "pypath-inputs-italk-italk-raw"]], "pypath.inputs.kea": [[546, "module-pypath.inputs.kea"]], "pypath.inputs.kea.kea_enzyme_substrate": [[547, "pypath-inputs-kea-kea-enzyme-substrate"]], "pypath.inputs.kea.kea_interactions": [[548, "pypath-inputs-kea-kea-interactions"]], "pypath.inputs.kegg": [[549, "module-pypath.inputs.kegg"]], "pypath.inputs.kegg.KeggPathway": [[550, "pypath-inputs-kegg-keggpathway"]], "pypath.inputs.kegg.kegg_dbget": [[551, "pypath-inputs-kegg-kegg-dbget"]], "pypath.inputs.kegg.kegg_interactions": [[552, "pypath-inputs-kegg-kegg-interactions"]], "pypath.inputs.kegg.kegg_medicus": [[553, "pypath-inputs-kegg-kegg-medicus"]], "pypath.inputs.kegg.kegg_medicus_complexes": [[554, "pypath-inputs-kegg-kegg-medicus-complexes"]], "pypath.inputs.kegg.kegg_medicus_interactions": [[555, "pypath-inputs-kegg-kegg-medicus-interactions"]], "pypath.inputs.kegg.kegg_pathway_annotations": [[556, "pypath-inputs-kegg-kegg-pathway-annotations"]], "pypath.inputs.kegg.kegg_pathway_annotations_pathwaycommons": [[557, "pypath-inputs-kegg-kegg-pathway-annotations-pathwaycommons"]], "pypath.inputs.kegg.kegg_pathways": [[558, "pypath-inputs-kegg-kegg-pathways"]], "pypath.inputs.kegg_api": [[559, "module-pypath.inputs.kegg_api"]], "pypath.inputs.kegg_api.disease_to_drug": [[560, "pypath-inputs-kegg-api-disease-to-drug"]], "pypath.inputs.kegg_api.disease_to_gene": [[561, "pypath-inputs-kegg-api-disease-to-gene"]], "pypath.inputs.kegg_api.disease_to_pathway": [[562, "pypath-inputs-kegg-api-disease-to-pathway"]], "pypath.inputs.kegg_api.drug_to_disease": [[563, "pypath-inputs-kegg-api-drug-to-disease"]], "pypath.inputs.kegg_api.drug_to_drug": [[564, "pypath-inputs-kegg-api-drug-to-drug"]], "pypath.inputs.kegg_api.drug_to_gene": [[565, "pypath-inputs-kegg-api-drug-to-gene"]], "pypath.inputs.kegg_api.drug_to_pathway": [[566, "pypath-inputs-kegg-api-drug-to-pathway"]], "pypath.inputs.kegg_api.gene_to_disease": [[567, "pypath-inputs-kegg-api-gene-to-disease"]], "pypath.inputs.kegg_api.gene_to_drug": [[568, "pypath-inputs-kegg-api-gene-to-drug"]], "pypath.inputs.kegg_api.gene_to_pathway": [[569, "pypath-inputs-kegg-api-gene-to-pathway"]], "pypath.inputs.kegg_api.kegg_drug_to_chebi": [[570, "pypath-inputs-kegg-api-kegg-drug-to-chebi"]], "pypath.inputs.kegg_api.kegg_gene_to_ncbi_geneid": [[571, "pypath-inputs-kegg-api-kegg-gene-to-ncbi-geneid"]], "pypath.inputs.kegg_api.kegg_gene_to_uniprot": [[572, "pypath-inputs-kegg-api-kegg-gene-to-uniprot"]], "pypath.inputs.kegg_api.pathway_to_disease": [[573, "pypath-inputs-kegg-api-pathway-to-disease"]], "pypath.inputs.kegg_api.pathway_to_drug": [[574, "pypath-inputs-kegg-api-pathway-to-drug"]], "pypath.inputs.kegg_api.pathway_to_gene": [[575, "pypath-inputs-kegg-api-pathway-to-gene"]], "pypath.inputs.kinasedotcom": [[576, "module-pypath.inputs.kinasedotcom"]], "pypath.inputs.kinasedotcom.kinasedotcom_annotations": [[577, "pypath-inputs-kinasedotcom-kinasedotcom-annotations"]], "pypath.inputs.kirouac2010": [[578, "module-pypath.inputs.kirouac2010"]], "pypath.inputs.kirouac2010.kirouac2010_interactions": [[579, "pypath-inputs-kirouac2010-kirouac2010-interactions"]], "pypath.inputs.lambert2018": [[580, "module-pypath.inputs.lambert2018"]], "pypath.inputs.lambert2018.lambert2018_annotations": [[581, "pypath-inputs-lambert2018-lambert2018-annotations"]], "pypath.inputs.lambert2018.lambert2018_s1_raw": [[582, "pypath-inputs-lambert2018-lambert2018-s1-raw"]], "pypath.inputs.laudanna": [[583, "module-pypath.inputs.laudanna"]], "pypath.inputs.laudanna.laudanna_directions": [[584, "pypath-inputs-laudanna-laudanna-directions"]], "pypath.inputs.laudanna.laudanna_effects": [[585, "pypath-inputs-laudanna-laudanna-effects"]], "pypath.inputs.li2012": [[586, "module-pypath.inputs.li2012"]], "pypath.inputs.li2012.get_li2012": [[587, "pypath-inputs-li2012-get-li2012"]], "pypath.inputs.li2012.li2012_dmi": [[588, "pypath-inputs-li2012-li2012-dmi"]], "pypath.inputs.li2012.li2012_enzyme_substrate": [[589, "pypath-inputs-li2012-li2012-enzyme-substrate"]], "pypath.inputs.li2012.li2012_interactions": [[590, "pypath-inputs-li2012-li2012-interactions"]], "pypath.inputs.lincs": [[591, "module-pypath.inputs.lincs"]], "pypath.inputs.lincs.lincs_compounds": [[592, "pypath-inputs-lincs-lincs-compounds"]], "pypath.inputs.lmpid": [[593, "module-pypath.inputs.lmpid"]], "pypath.inputs.lmpid.lmpid_dmi": [[594, "pypath-inputs-lmpid-lmpid-dmi"]], "pypath.inputs.lmpid.lmpid_interactions": [[595, "pypath-inputs-lmpid-lmpid-interactions"]], "pypath.inputs.lmpid.load_lmpid": [[596, "pypath-inputs-lmpid-load-lmpid"]], "pypath.inputs.lncdisease": [[597, "module-pypath.inputs.lncdisease"]], "pypath.inputs.lncdisease.lncdisease_interactions": [[598, "pypath-inputs-lncdisease-lncdisease-interactions"]], "pypath.inputs.lncrnadb": [[599, "module-pypath.inputs.lncrnadb"]], "pypath.inputs.lncrnadb.lncrnadb_interactions": [[600, "pypath-inputs-lncrnadb-lncrnadb-interactions"]], "pypath.inputs.locate": [[601, "module-pypath.inputs.locate"]], "pypath.inputs.locate.locate_localizations": [[602, "pypath-inputs-locate-locate-localizations"]], "pypath.inputs.lrdb": [[603, "module-pypath.inputs.lrdb"]], "pypath.inputs.lrdb.LrdbAnnotation": [[604, "pypath-inputs-lrdb-lrdbannotation"]], "pypath.inputs.lrdb.lrdb_annotations": [[605, "pypath-inputs-lrdb-lrdb-annotations"]], "pypath.inputs.lrdb.lrdb_interactions": [[606, "pypath-inputs-lrdb-lrdb-interactions"]], "pypath.inputs.macrophage": [[607, "module-pypath.inputs.macrophage"]], "pypath.inputs.macrophage.macrophage_interactions": [[608, "pypath-inputs-macrophage-macrophage-interactions"]], "pypath.inputs.main": [[609, "module-pypath.inputs.main"]], "pypath.inputs.matrisome": [[610, "module-pypath.inputs.matrisome"]], "pypath.inputs.matrisome.matrisome_annotations": [[611, "pypath-inputs-matrisome-matrisome-annotations"]], "pypath.inputs.matrixdb": [[612, "module-pypath.inputs.matrixdb"]], "pypath.inputs.matrixdb.matrixdb_annotations": [[613, "pypath-inputs-matrixdb-matrixdb-annotations"]], "pypath.inputs.matrixdb.matrixdb_ecm_proteins": [[614, "pypath-inputs-matrixdb-matrixdb-ecm-proteins"]], "pypath.inputs.matrixdb.matrixdb_interactions": [[615, "pypath-inputs-matrixdb-matrixdb-interactions"]], "pypath.inputs.matrixdb.matrixdb_membrane_proteins": [[616, "pypath-inputs-matrixdb-matrixdb-membrane-proteins"]], "pypath.inputs.matrixdb.matrixdb_secreted_proteins": [[617, "pypath-inputs-matrixdb-matrixdb-secreted-proteins"]], "pypath.inputs.mcam": [[618, "module-pypath.inputs.mcam"]], "pypath.inputs.mcam.mcam_cell_adhesion_molecules": [[619, "pypath-inputs-mcam-mcam-cell-adhesion-molecules"]], "pypath.inputs.membranome": [[620, "module-pypath.inputs.membranome"]], "pypath.inputs.membranome.membranome_annotations": [[621, "pypath-inputs-membranome-membranome-annotations"]], "pypath.inputs.mimp": [[622, "module-pypath.inputs.mimp"]], "pypath.inputs.mimp.get_kinase_class": [[623, "pypath-inputs-mimp-get-kinase-class"]], "pypath.inputs.mimp.mimp_enzyme_substrate": [[624, "pypath-inputs-mimp-mimp-enzyme-substrate"]], "pypath.inputs.mimp.mimp_interactions": [[625, "pypath-inputs-mimp-mimp-interactions"]], "pypath.inputs.mir2disease": [[626, "module-pypath.inputs.mir2disease"]], "pypath.inputs.mir2disease.mir2disease_interactions": [[627, "pypath-inputs-mir2disease-mir2disease-interactions"]], "pypath.inputs.mirbase": [[628, "module-pypath.inputs.mirbase"]], "pypath.inputs.mirbase.get_mirbase_aliases": [[629, "pypath-inputs-mirbase-get-mirbase-aliases"]], "pypath.inputs.mirbase.mirbase_ids": [[630, "pypath-inputs-mirbase-mirbase-ids"]], "pypath.inputs.mirbase.mirbase_mature": [[631, "pypath-inputs-mirbase-mirbase-mature"]], "pypath.inputs.mirbase.mirbase_mature_all": [[632, "pypath-inputs-mirbase-mirbase-mature-all"]], "pypath.inputs.mirbase.mirbase_precursor": [[633, "pypath-inputs-mirbase-mirbase-precursor"]], "pypath.inputs.mirbase.mirbase_precursor_all": [[634, "pypath-inputs-mirbase-mirbase-precursor-all"]], "pypath.inputs.mirbase.mirbase_precursor_to_mature": [[635, "pypath-inputs-mirbase-mirbase-precursor-to-mature"]], "pypath.inputs.mirdeathdb": [[636, "module-pypath.inputs.mirdeathdb"]], "pypath.inputs.mirdeathdb.mirdeathdb_interactions": [[637, "pypath-inputs-mirdeathdb-mirdeathdb-interactions"]], "pypath.inputs.mirecords": [[638, "module-pypath.inputs.mirecords"]], "pypath.inputs.mirecords.mirecords_interactions": [[639, "pypath-inputs-mirecords-mirecords-interactions"]], "pypath.inputs.mirtarbase": [[640, "module-pypath.inputs.mirtarbase"]], "pypath.inputs.mirtarbase.mirtarbase_interactions": [[641, "pypath-inputs-mirtarbase-mirtarbase-interactions"]], "pypath.inputs.mitab": [[642, "module-pypath.inputs.mitab"]], "pypath.inputs.mitab.mitab_field_list": [[643, "pypath-inputs-mitab-mitab-field-list"]], "pypath.inputs.mitab.mitab_field_uniprot": [[644, "pypath-inputs-mitab-mitab-field-uniprot"]], "pypath.inputs.mppi": [[645, "module-pypath.inputs.mppi"]], "pypath.inputs.mppi.mppi_interactions": [[646, "pypath-inputs-mppi-mppi-interactions"]], "pypath.inputs.msigdb": [[647, "module-pypath.inputs.msigdb"]], "pypath.inputs.msigdb.msigdb_annotations": [[648, "pypath-inputs-msigdb-msigdb-annotations"]], "pypath.inputs.msigdb.msigdb_download": [[649, "pypath-inputs-msigdb-msigdb-download"]], "pypath.inputs.msigdb.msigdb_download_collections": [[650, "pypath-inputs-msigdb-msigdb-download-collections"]], "pypath.inputs.ncrdeathdb": [[651, "module-pypath.inputs.ncrdeathdb"]], "pypath.inputs.ncrdeathdb.ncrdeathdb_interactions": [[652, "pypath-inputs-ncrdeathdb-ncrdeathdb-interactions"]], "pypath.inputs.negatome": [[653, "module-pypath.inputs.negatome"]], "pypath.inputs.negatome.negatome_interactions": [[654, "pypath-inputs-negatome-negatome-interactions"]], "pypath.inputs.netbiol": [[655, "module-pypath.inputs.netbiol"]], "pypath.inputs.netbiol.arn_interactions": [[656, "pypath-inputs-netbiol-arn-interactions"]], "pypath.inputs.netbiol.nrf2ome_interactions": [[657, "pypath-inputs-netbiol-nrf2ome-interactions"]], "pypath.inputs.netpath": [[658, "module-pypath.inputs.netpath"]], "pypath.inputs.netpath.netpath_interactions": [[659, "pypath-inputs-netpath-netpath-interactions"]], "pypath.inputs.netpath.netpath_names": [[660, "pypath-inputs-netpath-netpath-names"]], "pypath.inputs.netpath.netpath_pathway_annotations": [[661, "pypath-inputs-netpath-netpath-pathway-annotations"]], "pypath.inputs.offsides": [[662, "module-pypath.inputs.offsides"]], "pypath.inputs.offsides.offsides_side_effects": [[663, "pypath-inputs-offsides-offsides-side-effects"]], "pypath.inputs.oma": [[664, "module-pypath.inputs.oma"]], "pypath.inputs.oma.oma_orthologs": [[665, "pypath-inputs-oma-oma-orthologs"]], "pypath.inputs.oma.oma_table": [[666, "pypath-inputs-oma-oma-table"]], "pypath.inputs.ontology": [[667, "module-pypath.inputs.ontology"]], "pypath.inputs.ontology.listof_ontologies": [[668, "pypath-inputs-ontology-listof-ontologies"]], "pypath.inputs.ontology.ontology": [[669, "pypath-inputs-ontology-ontology"]], "pypath.inputs.opentargets": [[670, "module-pypath.inputs.opentargets"]], "pypath.inputs.opentargets.opentargets_adverse_reactions": [[671, "pypath-inputs-opentargets-opentargets-adverse-reactions"]], "pypath.inputs.opentargets.opentargets_baseline_expression": [[672, "pypath-inputs-opentargets-opentargets-baseline-expression"]], "pypath.inputs.opentargets.opentargets_direct_score": [[673, "pypath-inputs-opentargets-opentargets-direct-score"]], "pypath.inputs.opentargets.opentargets_general": [[674, "pypath-inputs-opentargets-opentargets-general"]], "pypath.inputs.opentargets.opentargets_indirect_score": [[675, "pypath-inputs-opentargets-opentargets-indirect-score"]], "pypath.inputs.opm": [[676, "module-pypath.inputs.opm"]], "pypath.inputs.opm.opm_annotations": [[677, "pypath-inputs-opm-opm-annotations"]], "pypath.inputs.oreganno": [[678, "module-pypath.inputs.oreganno"]], "pypath.inputs.oreganno.oreganno_interactions": [[679, "pypath-inputs-oreganno-oreganno-interactions"]], "pypath.inputs.oreganno.oreganno_raw": [[680, "pypath-inputs-oreganno-oreganno-raw"]], "pypath.inputs.panglaodb": [[681, "module-pypath.inputs.panglaodb"]], "pypath.inputs.panglaodb.panglaodb_annotations": [[682, "pypath-inputs-panglaodb-panglaodb-annotations"]], "pypath.inputs.panglaodb.panglaodb_raw": [[683, "pypath-inputs-panglaodb-panglaodb-raw"]], "pypath.inputs.pathophenodb": [[684, "module-pypath.inputs.pathophenodb"]], "pypath.inputs.pathophenodb.DiseasePathogen": [[685, "pypath-inputs-pathophenodb-diseasepathogen"]], "pypath.inputs.pathophenodb.disease_pathogen_interactions": [[686, "pypath-inputs-pathophenodb-disease-pathogen-interactions"]], "pypath.inputs.pathwaycommons": [[687, "module-pypath.inputs.pathwaycommons"]], "pypath.inputs.pathwaycommons.PathwayCommonsInteraction": [[688, "pypath-inputs-pathwaycommons-pathwaycommonsinteraction"]], "pypath.inputs.pathwaycommons.PathwayCommonsResource": [[689, "pypath-inputs-pathwaycommons-pathwaycommonsresource"]], "pypath.inputs.pathwaycommons.pathwaycommons_bind_interactions": [[690, "pypath-inputs-pathwaycommons-pathwaycommons-bind-interactions"]], "pypath.inputs.pathwaycommons.pathwaycommons_biogrid_interactions": [[691, "pypath-inputs-pathwaycommons-pathwaycommons-biogrid-interactions"]], "pypath.inputs.pathwaycommons.pathwaycommons_corum_interactions": [[692, "pypath-inputs-pathwaycommons-pathwaycommons-corum-interactions"]], "pypath.inputs.pathwaycommons.pathwaycommons_dip_interactions": [[693, "pypath-inputs-pathwaycommons-pathwaycommons-dip-interactions"]], "pypath.inputs.pathwaycommons.pathwaycommons_hprd_interactions": [[694, "pypath-inputs-pathwaycommons-pathwaycommons-hprd-interactions"]], "pypath.inputs.pathwaycommons.pathwaycommons_inoh_interactions": [[695, "pypath-inputs-pathwaycommons-pathwaycommons-inoh-interactions"]], "pypath.inputs.pathwaycommons.pathwaycommons_intact_interactions": [[696, "pypath-inputs-pathwaycommons-pathwaycommons-intact-interactions"]], "pypath.inputs.pathwaycommons.pathwaycommons_interactions": [[697, "pypath-inputs-pathwaycommons-pathwaycommons-interactions"]], "pypath.inputs.pathwaycommons.pathwaycommons_kegg_interactions": [[698, "pypath-inputs-pathwaycommons-pathwaycommons-kegg-interactions"]], "pypath.inputs.pathwaycommons.pathwaycommons_netpath_interactions": [[699, "pypath-inputs-pathwaycommons-pathwaycommons-netpath-interactions"]], "pypath.inputs.pathwaycommons.pathwaycommons_panther_interactions": [[700, "pypath-inputs-pathwaycommons-pathwaycommons-panther-interactions"]], "pypath.inputs.pathwaycommons.pathwaycommons_phosphosite_interactions": [[701, "pypath-inputs-pathwaycommons-pathwaycommons-phosphosite-interactions"]], "pypath.inputs.pathwaycommons.pathwaycommons_reactome_interactions": [[702, "pypath-inputs-pathwaycommons-pathwaycommons-reactome-interactions"]], "pypath.inputs.pathwaycommons.pathwaycommons_wikipathways_interactions": [[703, "pypath-inputs-pathwaycommons-pathwaycommons-wikipathways-interactions"]], "pypath.inputs.pazar": [[704, "module-pypath.inputs.pazar"]], "pypath.inputs.pazar.pazar_interactions": [[705, "pypath-inputs-pazar-pazar-interactions"]], "pypath.inputs.pdb": [[706, "module-pypath.inputs.pdb"]], "pypath.inputs.pdb.pdb_chains": [[707, "pypath-inputs-pdb-pdb-chains"]], "pypath.inputs.pdb.pdb_complexes": [[708, "pypath-inputs-pdb-pdb-complexes"]], "pypath.inputs.pdb.pdb_uniprot": [[709, "pypath-inputs-pdb-pdb-uniprot"]], "pypath.inputs.pdzbase": [[710, "module-pypath.inputs.pdzbase"]], "pypath.inputs.pdzbase.pdzbase_interactions": [[711, "pypath-inputs-pdzbase-pdzbase-interactions"]], "pypath.inputs.pepcyber": [[712, "module-pypath.inputs.pepcyber"]], "pypath.inputs.pepcyber.pepcyber_details": [[713, "pypath-inputs-pepcyber-pepcyber-details"]], "pypath.inputs.pepcyber.pepcyber_interactions": [[714, "pypath-inputs-pepcyber-pepcyber-interactions"]], "pypath.inputs.pfam": [[715, "module-pypath.inputs.pfam"]], "pypath.inputs.pfam.pfam_names": [[716, "pypath-inputs-pfam-pfam-names"]], "pypath.inputs.pfam.pfam_pdb": [[717, "pypath-inputs-pfam-pfam-pdb"]], "pypath.inputs.pfam.pfam_regions": [[718, "pypath-inputs-pfam-pfam-regions"]], "pypath.inputs.pfam.pfam_uniprot": [[719, "pypath-inputs-pfam-pfam-uniprot"]], "pypath.inputs.pharos": [[720, "module-pypath.inputs.pharos"]], "pypath.inputs.pharos.pharos_diseases": [[721, "pypath-inputs-pharos-pharos-diseases"]], "pypath.inputs.pharos.pharos_expression": [[722, "pypath-inputs-pharos-pharos-expression"]], "pypath.inputs.pharos.pharos_general": [[723, "pypath-inputs-pharos-pharos-general"]], "pypath.inputs.pharos.pharos_gtex": [[724, "pypath-inputs-pharos-pharos-gtex"]], "pypath.inputs.pharos.pharos_ligands": [[725, "pypath-inputs-pharos-pharos-ligands"]], "pypath.inputs.pharos.pharos_orthologs": [[726, "pypath-inputs-pharos-pharos-orthologs"]], "pypath.inputs.pharos.pharos_targets": [[727, "pypath-inputs-pharos-pharos-targets"]], "pypath.inputs.pharos.pharos_xrefs": [[728, "pypath-inputs-pharos-pharos-xrefs"]], "pypath.inputs.phobius": [[729, "module-pypath.inputs.phobius"]], "pypath.inputs.phobius.phobius_annotations": [[730, "pypath-inputs-phobius-phobius-annotations"]], "pypath.inputs.phosphatome": [[731, "module-pypath.inputs.phosphatome"]], "pypath.inputs.phosphatome.phosphatome_annotations": [[732, "pypath-inputs-phosphatome-phosphatome-annotations"]], "pypath.inputs.phosphoelm": [[733, "module-pypath.inputs.phosphoelm"]], "pypath.inputs.phosphoelm.phosphoelm_enzyme_substrate": [[734, "pypath-inputs-phosphoelm-phosphoelm-enzyme-substrate"]], "pypath.inputs.phosphoelm.phosphoelm_interactions": [[735, "pypath-inputs-phosphoelm-phosphoelm-interactions"]], "pypath.inputs.phosphoelm.phosphoelm_kinases": [[736, "pypath-inputs-phosphoelm-phosphoelm-kinases"]], "pypath.inputs.phosphonetworks": [[737, "module-pypath.inputs.phosphonetworks"]], "pypath.inputs.phosphonetworks.phosphonetworks_enzyme_substrate": [[738, "pypath-inputs-phosphonetworks-phosphonetworks-enzyme-substrate"]], "pypath.inputs.phosphonetworks.phosphonetworks_interactions": [[739, "pypath-inputs-phosphonetworks-phosphonetworks-interactions"]], "pypath.inputs.phosphopoint": [[740, "module-pypath.inputs.phosphopoint"]], "pypath.inputs.phosphopoint.phosphopoint_directions": [[741, "pypath-inputs-phosphopoint-phosphopoint-directions"]], "pypath.inputs.phosphopoint.phosphopoint_interactions": [[742, "pypath-inputs-phosphopoint-phosphopoint-interactions"]], "pypath.inputs.phosphosite": [[743, "module-pypath.inputs.phosphosite"]], "pypath.inputs.phosphosite.phosphosite_directions": [[744, "pypath-inputs-phosphosite-phosphosite-directions"]], "pypath.inputs.phosphosite.phosphosite_enzyme_substrate": [[745, "pypath-inputs-phosphosite-phosphosite-enzyme-substrate"]], "pypath.inputs.phosphosite.phosphosite_interactions": [[746, "pypath-inputs-phosphosite-phosphosite-interactions"]], "pypath.inputs.phosphosite.phosphosite_interactions_all": [[747, "pypath-inputs-phosphosite-phosphosite-interactions-all"]], "pypath.inputs.phosphosite.phosphosite_interactions_curated": [[748, "pypath-inputs-phosphosite-phosphosite-interactions-curated"]], "pypath.inputs.phosphosite.phosphosite_interactions_new": [[749, "pypath-inputs-phosphosite-phosphosite-interactions-new"]], "pypath.inputs.phosphosite.phosphosite_interactions_noref": [[750, "pypath-inputs-phosphosite-phosphosite-interactions-noref"]], "pypath.inputs.phosphosite.phosphosite_ptm_orthology": [[751, "pypath-inputs-phosphosite-phosphosite-ptm-orthology"]], "pypath.inputs.phosphosite.phosphosite_ptms": [[752, "pypath-inputs-phosphosite-phosphosite-ptms"]], "pypath.inputs.phosphosite.phosphosite_regsites": [[753, "pypath-inputs-phosphosite-phosphosite-regsites"]], "pypath.inputs.phosphosite.phosphosite_regsites_one_organism": [[754, "pypath-inputs-phosphosite-phosphosite-regsites-one-organism"]], "pypath.inputs.phosphosite.regsites_tab": [[755, "pypath-inputs-phosphosite-regsites-tab"]], "pypath.inputs.pisa": [[756, "module-pypath.inputs.pisa"]], "pypath.inputs.pisa.PisaBond": [[757, "pypath-inputs-pisa-pisabond"]], "pypath.inputs.pisa.pisa_bonds": [[758, "pypath-inputs-pisa-pisa-bonds"]], "pypath.inputs.pisa.pisa_interfaces": [[759, "pypath-inputs-pisa-pisa-interfaces"]], "pypath.inputs.pro": [[760, "module-pypath.inputs.pro"]], "pypath.inputs.pro.get_pro": [[761, "pypath-inputs-pro-get-pro"]], "pypath.inputs.pro.pro_mapping": [[762, "pypath-inputs-pro-pro-mapping"]], "pypath.inputs.progeny": [[763, "module-pypath.inputs.progeny"]], "pypath.inputs.progeny.progeny_annotations": [[764, "pypath-inputs-progeny-progeny-annotations"]], "pypath.inputs.progeny.progeny_raw": [[765, "pypath-inputs-progeny-progeny-raw"]], "pypath.inputs.proteinatlas": [[766, "module-pypath.inputs.proteinatlas"]], "pypath.inputs.proteinatlas.get_proteinatlas": [[767, "pypath-inputs-proteinatlas-get-proteinatlas"]], "pypath.inputs.proteinatlas.proteinatlas_annotations": [[768, "pypath-inputs-proteinatlas-proteinatlas-annotations"]], "pypath.inputs.proteinatlas.proteinatlas_secretome_annotations": [[769, "pypath-inputs-proteinatlas-proteinatlas-secretome-annotations"]], "pypath.inputs.proteinatlas.proteinatlas_subcellular_annotations": [[770, "pypath-inputs-proteinatlas-proteinatlas-subcellular-annotations"]], "pypath.inputs.proteins": [[771, "module-pypath.inputs.proteins"]], "pypath.inputs.proteins.variants": [[772, "pypath-inputs-proteins-variants"]], "pypath.inputs.protmapper": [[773, "module-pypath.inputs.protmapper"]], "pypath.inputs.protmapper.get_protmapper": [[774, "pypath-inputs-protmapper-get-protmapper"]], "pypath.inputs.protmapper.protmapper_enzyme_substrate": [[775, "pypath-inputs-protmapper-protmapper-enzyme-substrate"]], "pypath.inputs.protmapper.protmapper_interactions": [[776, "pypath-inputs-protmapper-protmapper-interactions"]], "pypath.inputs.pubchem": [[777, "module-pypath.inputs.pubchem"]], "pypath.inputs.pubchem.pubchem_mapping": [[778, "pypath-inputs-pubchem-pubchem-mapping"]], "pypath.inputs.pubmed": [[779, "module-pypath.inputs.pubmed"]], "pypath.inputs.pubmed.get_pmid": [[780, "pypath-inputs-pubmed-get-pmid"]], "pypath.inputs.pubmed.get_pubmeds": [[781, "pypath-inputs-pubmed-get-pubmeds"]], "pypath.inputs.pubmed.only_pmids": [[782, "pypath-inputs-pubmed-only-pmids"]], "pypath.inputs.pubmed.open_pubmed": [[783, "pypath-inputs-pubmed-open-pubmed"]], "pypath.inputs.pubmed.pmids_dict": [[784, "pypath-inputs-pubmed-pmids-dict"]], "pypath.inputs.pubmed.pmids_list": [[785, "pypath-inputs-pubmed-pmids-list"]], "pypath.inputs.ramilowski2015": [[786, "module-pypath.inputs.ramilowski2015"]], "pypath.inputs.ramilowski2015.ramilowski_interactions": [[787, "pypath-inputs-ramilowski2015-ramilowski-interactions"]], "pypath.inputs.ramilowski2015.ramilowski_locations": [[788, "pypath-inputs-ramilowski2015-ramilowski-locations"]], "pypath.inputs.ramp": [[789, "module-pypath.inputs.ramp"]], "pypath.inputs.ramp.ramp_id_types": [[790, "pypath-inputs-ramp-ramp-id-types"]], "pypath.inputs.ramp.ramp_id_types_2": [[791, "pypath-inputs-ramp-ramp-id-types-2"]], "pypath.inputs.ramp.ramp_list_tables": [[792, "pypath-inputs-ramp-ramp-list-tables"]], "pypath.inputs.ramp.ramp_mapping": [[793, "pypath-inputs-ramp-ramp-mapping"]], "pypath.inputs.ramp.ramp_raw": [[794, "pypath-inputs-ramp-ramp-raw"]], "pypath.inputs.ramp.ramp_show_tables": [[795, "pypath-inputs-ramp-ramp-show-tables"]], "pypath.inputs.rdata": [[796, "module-pypath.inputs.rdata"]], "pypath.inputs.reaction": [[797, "module-pypath.inputs.reaction"]], "pypath.inputs.reaction.acsn_biopax": [[798, "pypath-inputs-reaction-acsn-biopax"]], "pypath.inputs.reaction.acsn_interactions_2": [[799, "pypath-inputs-reaction-acsn-interactions-2"]], "pypath.inputs.reaction.get_acsn_effects": [[800, "pypath-inputs-reaction-get-acsn-effects"]], "pypath.inputs.reaction.get_controls": [[801, "pypath-inputs-reaction-get-controls"]], "pypath.inputs.reaction.get_interactions": [[802, "pypath-inputs-reaction-get-interactions"]], "pypath.inputs.reaction.get_reactions": [[803, "pypath-inputs-reaction-get-reactions"]], "pypath.inputs.reaction.get_soup": [[804, "pypath-inputs-reaction-get-soup"]], "pypath.inputs.reaction.panther_biopax": [[805, "pypath-inputs-reaction-panther-biopax"]], "pypath.inputs.reaction.panther_interactions": [[806, "pypath-inputs-reaction-panther-interactions"]], "pypath.inputs.reaction.pid_biopax": [[807, "pypath-inputs-reaction-pid-biopax"]], "pypath.inputs.reaction.pid_interactions": [[808, "pypath-inputs-reaction-pid-interactions"]], "pypath.inputs.reaction.process_complex": [[809, "pypath-inputs-reaction-process-complex"]], "pypath.inputs.reaction.process_controls": [[810, "pypath-inputs-reaction-process-controls"]], "pypath.inputs.reaction.process_reactions": [[811, "pypath-inputs-reaction-process-reactions"]], "pypath.inputs.reaction.reactions_biopax": [[812, "pypath-inputs-reaction-reactions-biopax"]], "pypath.inputs.reaction.reactome_biopax": [[813, "pypath-inputs-reaction-reactome-biopax"]], "pypath.inputs.reaction.reactome_bs": [[814, "pypath-inputs-reaction-reactome-bs"]], "pypath.inputs.reaction.reactome_interactions": [[815, "pypath-inputs-reaction-reactome-interactions"]], "pypath.inputs.reaction.reactome_sbml": [[816, "pypath-inputs-reaction-reactome-sbml"]], "pypath.inputs.reactome": [[817, "module-pypath.inputs.reactome"]], "pypath.inputs.reactome.reactome_chebis": [[818, "pypath-inputs-reactome-reactome-chebis"]], "pypath.inputs.reactome.reactome_pathway_relations": [[819, "pypath-inputs-reactome-reactome-pathway-relations"]], "pypath.inputs.reactome.reactome_pathways": [[820, "pypath-inputs-reactome-reactome-pathways"]], "pypath.inputs.reactome.reactome_uniprots": [[821, "pypath-inputs-reactome-reactome-uniprots"]], "pypath.inputs.scconnect": [[822, "module-pypath.inputs.scconnect"]], "pypath.inputs.scconnect.scconnect_annotations": [[823, "pypath-inputs-scconnect-scconnect-annotations"]], "pypath.inputs.scconnect.scconnect_complexes": [[824, "pypath-inputs-scconnect-scconnect-complexes"]], "pypath.inputs.scconnect.scconnect_interactions": [[825, "pypath-inputs-scconnect-scconnect-interactions"]], "pypath.inputs.science": [[826, "module-pypath.inputs.science"]], "pypath.inputs.science.science_download": [[827, "pypath-inputs-science-science-download"]], "pypath.inputs.sider": [[828, "module-pypath.inputs.sider"]], "pypath.inputs.sider.SiderDrug": [[829, "pypath-inputs-sider-siderdrug"]], "pypath.inputs.sider.SiderSideeffect": [[830, "pypath-inputs-sider-sidersideeffect"]], "pypath.inputs.sider.SiderSideeffectMeddra": [[831, "pypath-inputs-sider-sidersideeffectmeddra"]], "pypath.inputs.sider.SiderSideeffetFrequency": [[832, "pypath-inputs-sider-sidersideeffetfrequency"]], "pypath.inputs.sider.sider_drug_names": [[833, "pypath-inputs-sider-sider-drug-names"]], "pypath.inputs.sider.sider_meddra_side_effects": [[834, "pypath-inputs-sider-sider-meddra-side-effects"]], "pypath.inputs.sider.sider_side_effect_frequencies": [[835, "pypath-inputs-sider-sider-side-effect-frequencies"]], "pypath.inputs.sider.sider_side_effects": [[836, "pypath-inputs-sider-sider-side-effects"]], "pypath.inputs.signalink": [[837, "module-pypath.inputs.signalink"]], "pypath.inputs.signalink.signalink_annotations": [[838, "pypath-inputs-signalink-signalink-annotations"]], "pypath.inputs.signalink.signalink_function_annotations": [[839, "pypath-inputs-signalink-signalink-function-annotations"]], "pypath.inputs.signalink.signalink_interactions": [[840, "pypath-inputs-signalink-signalink-interactions"]], "pypath.inputs.signalink.signalink_pathway_annotations": [[841, "pypath-inputs-signalink-signalink-pathway-annotations"]], "pypath.inputs.signor": [[842, "module-pypath.inputs.signor"]], "pypath.inputs.signor.signor_complexes": [[843, "pypath-inputs-signor-signor-complexes"]], "pypath.inputs.signor.signor_enzyme_substrate": [[844, "pypath-inputs-signor-signor-enzyme-substrate"]], "pypath.inputs.signor.signor_interactions": [[845, "pypath-inputs-signor-signor-interactions"]], "pypath.inputs.signor.signor_pathway_annotations": [[846, "pypath-inputs-signor-signor-pathway-annotations"]], "pypath.inputs.signor.signor_pathways": [[847, "pypath-inputs-signor-signor-pathways"]], "pypath.inputs.signor.signor_protein_families": [[848, "pypath-inputs-signor-signor-protein-families"]], "pypath.inputs.spike": [[849, "module-pypath.inputs.spike"]], "pypath.inputs.spike.spike_complexes": [[850, "pypath-inputs-spike-spike-complexes"]], "pypath.inputs.spike.spike_interactions": [[851, "pypath-inputs-spike-spike-interactions"]], "pypath.inputs.stitch": [[852, "module-pypath.inputs.stitch"]], "pypath.inputs.stitch.stitch_actions_interactions": [[853, "pypath-inputs-stitch-stitch-actions-interactions"]], "pypath.inputs.stitch.stitch_links_interactions": [[854, "pypath-inputs-stitch-stitch-links-interactions"]], "pypath.inputs.string": [[855, "module-pypath.inputs.string"]], "pypath.inputs.string.string_effects": [[856, "pypath-inputs-string-string-effects"]], "pypath.inputs.string.string_links_interactions": [[857, "pypath-inputs-string-string-links-interactions"]], "pypath.inputs.string.string_physical_interactions": [[858, "pypath-inputs-string-string-physical-interactions"]], "pypath.inputs.string.string_species": [[859, "pypath-inputs-string-string-species"]], "pypath.inputs.surfaceome": [[860, "module-pypath.inputs.surfaceome"]], "pypath.inputs.surfaceome.surfaceome_annotations": [[861, "pypath-inputs-surfaceome-surfaceome-annotations"]], "pypath.inputs.switches_elm": [[862, "module-pypath.inputs.switches_elm"]], "pypath.inputs.switches_elm.get_switches_elm": [[863, "pypath-inputs-switches-elm-get-switches-elm"]], "pypath.inputs.talklr": [[864, "module-pypath.inputs.talklr"]], "pypath.inputs.talklr.talklr_annotations": [[865, "pypath-inputs-talklr-talklr-annotations"]], "pypath.inputs.talklr.talklr_interactions": [[866, "pypath-inputs-talklr-talklr-interactions"]], "pypath.inputs.talklr.talklr_raw": [[867, "pypath-inputs-talklr-talklr-raw"]], "pypath.inputs.tcdb": [[868, "module-pypath.inputs.tcdb"]], "pypath.inputs.tcdb.tcdb_annotations": [[869, "pypath-inputs-tcdb-tcdb-annotations"]], "pypath.inputs.tcdb.tcdb_classes": [[870, "pypath-inputs-tcdb-tcdb-classes"]], "pypath.inputs.tcdb.tcdb_families": [[871, "pypath-inputs-tcdb-tcdb-families"]], "pypath.inputs.tfcensus": [[872, "module-pypath.inputs.tfcensus"]], "pypath.inputs.tfcensus.tfcensus_annotations": [[873, "pypath-inputs-tfcensus-tfcensus-annotations"]], "pypath.inputs.threedcomplex": [[874, "module-pypath.inputs.threedcomplex"]], "pypath.inputs.threedcomplex.threedcomplex_chains": [[875, "pypath-inputs-threedcomplex-threedcomplex-chains"]], "pypath.inputs.threedcomplex.threedcomplex_complexes": [[876, "pypath-inputs-threedcomplex-threedcomplex-complexes"]], "pypath.inputs.threedcomplex.threedcomplex_contacts": [[877, "pypath-inputs-threedcomplex-threedcomplex-contacts"]], "pypath.inputs.threedcomplex.threedcomplex_ddi": [[878, "pypath-inputs-threedcomplex-threedcomplex-ddi"]], "pypath.inputs.threedcomplex.threedcomplex_nresidues": [[879, "pypath-inputs-threedcomplex-threedcomplex-nresidues"]], "pypath.inputs.threedid": [[880, "module-pypath.inputs.threedid"]], "pypath.inputs.threedid.get_3did": [[881, "pypath-inputs-threedid-get-3did"]], "pypath.inputs.threedid.get_3did_ddi": [[882, "pypath-inputs-threedid-get-3did-ddi"]], "pypath.inputs.threedid.get_3did_dmi": [[883, "pypath-inputs-threedid-get-3did-dmi"]], "pypath.inputs.threedid.process_3did_dmi": [[884, "pypath-inputs-threedid-process-3did-dmi"]], "pypath.inputs.topdb": [[885, "module-pypath.inputs.topdb"]], "pypath.inputs.topdb.topdb_annotations": [[886, "pypath-inputs-topdb-topdb-annotations"]], "pypath.inputs.transmir": [[887, "module-pypath.inputs.transmir"]], "pypath.inputs.transmir.transmir_interactions": [[888, "pypath-inputs-transmir-transmir-interactions"]], "pypath.inputs.trip": [[889, "module-pypath.inputs.trip"]], "pypath.inputs.trip.take_a_trip": [[890, "pypath-inputs-trip-take-a-trip"]], "pypath.inputs.trip.trip_find_uniprot": [[891, "pypath-inputs-trip-trip-find-uniprot"]], "pypath.inputs.trip.trip_get_uniprot": [[892, "pypath-inputs-trip-trip-get-uniprot"]], "pypath.inputs.trip.trip_interactions": [[893, "pypath-inputs-trip-trip-interactions"]], "pypath.inputs.trip.trip_process": [[894, "pypath-inputs-trip-trip-process"]], "pypath.inputs.trip.trip_process_table": [[895, "pypath-inputs-trip-trip-process-table"]], "pypath.inputs.trrust": [[896, "module-pypath.inputs.trrust"]], "pypath.inputs.trrust.trrust_human": [[897, "pypath-inputs-trrust-trrust-human"]], "pypath.inputs.trrust.trrust_interactions": [[898, "pypath-inputs-trrust-trrust-interactions"]], "pypath.inputs.trrust.trrust_mouse": [[899, "pypath-inputs-trrust-trrust-mouse"]], "pypath.inputs.twosides": [[900, "module-pypath.inputs.twosides"]], "pypath.inputs.twosides.twosides_interactions": [[901, "pypath-inputs-twosides-twosides-interactions"]], "pypath.inputs.unichem": [[902, "module-pypath.inputs.unichem"]], "pypath.inputs.unichem.info": [[903, "pypath-inputs-unichem-info"]], "pypath.inputs.unichem.unichem_info": [[904, "pypath-inputs-unichem-unichem-info"]], "pypath.inputs.unichem.unichem_mapping": [[905, "pypath-inputs-unichem-unichem-mapping"]], "pypath.inputs.unichem.unichem_sources": [[906, "pypath-inputs-unichem-unichem-sources"]], "pypath.inputs.uniprot": [[907, "module-pypath.inputs.uniprot"]], "pypath.inputs.uniprot.Taxon": [[908, "pypath-inputs-uniprot-taxon"]], "pypath.inputs.uniprot.UniprotQuery": [[909, "pypath-inputs-uniprot-uniprotquery"]], "pypath.inputs.uniprot.UniprotRecordHistory": [[910, "pypath-inputs-uniprot-uniprotrecordhistory"]], "pypath.inputs.uniprot.deleted_uniprot_genesymbol": [[911, "pypath-inputs-uniprot-deleted-uniprot-genesymbol"]], "pypath.inputs.uniprot.get_uniprot_sec": [[912, "pypath-inputs-uniprot-get-uniprot-sec"]], "pypath.inputs.uniprot.idmapping_idtypes": [[913, "pypath-inputs-uniprot-idmapping-idtypes"]], "pypath.inputs.uniprot.protein_datasheet": [[914, "pypath-inputs-uniprot-protein-datasheet"]], "pypath.inputs.uniprot.query_builder": [[915, "pypath-inputs-uniprot-query-builder"]], "pypath.inputs.uniprot.swissprot_deleted": [[916, "pypath-inputs-uniprot-swissprot-deleted"]], "pypath.inputs.uniprot.trembl_deleted": [[917, "pypath-inputs-uniprot-trembl-deleted"]], "pypath.inputs.uniprot.uniprot_data": [[918, "pypath-inputs-uniprot-uniprot-data"]], "pypath.inputs.uniprot.uniprot_deleted": [[919, "pypath-inputs-uniprot-uniprot-deleted"]], "pypath.inputs.uniprot.uniprot_families": [[920, "pypath-inputs-uniprot-uniprot-families"]], "pypath.inputs.uniprot.uniprot_history": [[921, "pypath-inputs-uniprot-uniprot-history"]], "pypath.inputs.uniprot.uniprot_history_recent_datasheet": [[922, "pypath-inputs-uniprot-uniprot-history-recent-datasheet"]], "pypath.inputs.uniprot.uniprot_keywords": [[923, "pypath-inputs-uniprot-uniprot-keywords"]], "pypath.inputs.uniprot.uniprot_locations": [[924, "pypath-inputs-uniprot-uniprot-locations"]], "pypath.inputs.uniprot.uniprot_ncbi_taxids": [[925, "pypath-inputs-uniprot-uniprot-ncbi-taxids"]], "pypath.inputs.uniprot.uniprot_ncbi_taxids_2": [[926, "pypath-inputs-uniprot-uniprot-ncbi-taxids-2"]], "pypath.inputs.uniprot.uniprot_preprocess": [[927, "pypath-inputs-uniprot-uniprot-preprocess"]], "pypath.inputs.uniprot.uniprot_query": [[928, "pypath-inputs-uniprot-uniprot-query"]], "pypath.inputs.uniprot.uniprot_recent_version": [[929, "pypath-inputs-uniprot-uniprot-recent-version"]], "pypath.inputs.uniprot.uniprot_taxonomy": [[930, "pypath-inputs-uniprot-uniprot-taxonomy"]], "pypath.inputs.uniprot.uniprot_tissues": [[931, "pypath-inputs-uniprot-uniprot-tissues"]], "pypath.inputs.uniprot.uniprot_topology": [[932, "pypath-inputs-uniprot-uniprot-topology"]], "pypath.inputs.uniprot.valid_uniprot": [[933, "pypath-inputs-uniprot-valid-uniprot"]], "pypath.inputs.uniprot_db": [[934, "module-pypath.inputs.uniprot_db"]], "pypath.inputs.uniprot_db.all_swissprots": [[935, "pypath-inputs-uniprot-db-all-swissprots"]], "pypath.inputs.uniprot_db.all_trembls": [[936, "pypath-inputs-uniprot-db-all-trembls"]], "pypath.inputs.uniprot_db.all_uniprots": [[937, "pypath-inputs-uniprot-db-all-uniprots"]], "pypath.inputs.uniprot_db.get_db": [[938, "pypath-inputs-uniprot-db-get-db"]], "pypath.inputs.uniprot_db.init_db": [[939, "pypath-inputs-uniprot-db-init-db"]], "pypath.inputs.uniprot_db.is_swissprot": [[940, "pypath-inputs-uniprot-db-is-swissprot"]], "pypath.inputs.uniprot_db.is_trembl": [[941, "pypath-inputs-uniprot-db-is-trembl"]], "pypath.inputs.uniprot_db.is_uniprot": [[942, "pypath-inputs-uniprot-db-is-uniprot"]], "pypath.inputs.wang": [[943, "module-pypath.inputs.wang"]], "pypath.inputs.wang.cui_interactions": [[944, "pypath-inputs-wang-cui-interactions"]], "pypath.inputs.wang.hsn_interactions": [[945, "pypath-inputs-wang-hsn-interactions"]], "pypath.inputs.wang.wang_annotations": [[946, "pypath-inputs-wang-wang-annotations"]], "pypath.inputs.wang.wang_interactions": [[947, "pypath-inputs-wang-wang-interactions"]], "pypath.inputs.wojtowicz2020": [[948, "module-pypath.inputs.wojtowicz2020"]], "pypath.inputs.wojtowicz2020.wojtowicz2020_interactions": [[949, "pypath-inputs-wojtowicz2020-wojtowicz2020-interactions"]], "pypath.inputs.wojtowicz2020.wojtowicz2020_raw": [[950, "pypath-inputs-wojtowicz2020-wojtowicz2020-raw"]], "pypath.inputs.zhong2015": [[951, "module-pypath.inputs.zhong2015"]], "pypath.inputs.zhong2015.zhong2015_annotations": [[952, "pypath-inputs-zhong2015-zhong2015-annotations"]], "pypath.internals": [[953, "module-pypath.internals"]], "pypath.internals.annot_formats": [[954, "module-pypath.internals.annot_formats"]], "pypath.internals.annot_formats.AnnotDef": [[955, "pypath-internals-annot-formats-annotdef"]], "pypath.internals.annot_formats.AnnotDefKey": [[956, "pypath-internals-annot-formats-annotdefkey"]], "pypath.internals.annot_formats.AnnotOp": [[957, "pypath-internals-annot-formats-annotop"]], "pypath.internals.annot_formats.AnnotationGroup": [[958, "pypath-internals-annot-formats-annotationgroup"]], "pypath.internals.input_formats": [[959, "module-pypath.internals.input_formats"]], "pypath.internals.input_formats.ArrayMapping": [[960, "pypath-internals-input-formats-arraymapping"]], "pypath.internals.input_formats.BiomartMapping": [[961, "pypath-internals-input-formats-biomartmapping"]], "pypath.internals.input_formats.FileMapping": [[962, "pypath-internals-input-formats-filemapping"]], "pypath.internals.input_formats.HmdbMapping": [[963, "pypath-internals-input-formats-hmdbmapping"]], "pypath.internals.input_formats.MappingInput": [[964, "pypath-internals-input-formats-mappinginput"]], "pypath.internals.input_formats.NetworkInput": [[965, "pypath-internals-input-formats-networkinput"]], "pypath.internals.input_formats.PickleMapping": [[966, "pypath-internals-input-formats-picklemapping"]], "pypath.internals.input_formats.ProMapping": [[967, "pypath-internals-input-formats-promapping"]], "pypath.internals.input_formats.RampMapping": [[968, "pypath-internals-input-formats-rampmapping"]], "pypath.internals.input_formats.ReadList": [[969, "pypath-internals-input-formats-readlist"]], "pypath.internals.input_formats.UnichemMapping": [[970, "pypath-internals-input-formats-unichemmapping"]], "pypath.internals.input_formats.UniprotListMapping": [[971, "pypath-internals-input-formats-uniprotlistmapping"]], "pypath.internals.input_formats.UniprotMapping": [[972, "pypath-internals-input-formats-uniprotmapping"]], "pypath.internals.intera": [[973, "module-pypath.internals.intera"]], "pypath.internals.intera.Complex": [[974, "pypath-internals-intera-complex"]], "pypath.internals.intera.Domain": [[975, "pypath-internals-intera-domain"]], "pypath.internals.intera.DomainDomain": [[976, "pypath-internals-intera-domaindomain"]], "pypath.internals.intera.DomainMotif": [[977, "pypath-internals-intera-domainmotif"]], "pypath.internals.intera.Interface": [[978, "pypath-internals-intera-interface"]], "pypath.internals.intera.Motif": [[979, "pypath-internals-intera-motif"]], "pypath.internals.intera.Ptm": [[980, "pypath-internals-intera-ptm"]], "pypath.internals.intera.Regulation": [[981, "pypath-internals-intera-regulation"]], "pypath.internals.intera.Residue": [[982, "pypath-internals-intera-residue"]], "pypath.internals.license": [[983, "module-pypath.internals.license"]], "pypath.internals.license.License": [[984, "pypath-internals-license-license"]], "pypath.internals.license.LicenseAttrib": [[985, "pypath-internals-license-licenseattrib"]], "pypath.internals.license.LicenseFeature": [[986, "pypath-internals-license-licensefeature"]], "pypath.internals.license.LicensePurpose": [[987, "pypath-internals-license-licensepurpose"]], "pypath.internals.license.LicenseSharing": [[988, "pypath-internals-license-licensesharing"]], "pypath.internals.maps": [[989, "module-pypath.internals.maps"]], "pypath.internals.refs": [[990, "module-pypath.internals.refs"]], "pypath.internals.refs.Reference": [[991, "pypath-internals-refs-reference"]], "pypath.internals.refs.get_pubmed_data": [[992, "pypath-internals-refs-get-pubmed-data"]], "pypath.internals.resource": [[993, "module-pypath.internals.resource"]], "pypath.internals.resource.AbstractResource": [[994, "pypath-internals-resource-abstractresource"]], "pypath.internals.resource.EnzymeSubstrateResource": [[995, "pypath-internals-resource-enzymesubstrateresource"]], "pypath.internals.resource.EnzymeSubstrateResourceKey": [[996, "pypath-internals-resource-enzymesubstrateresourcekey"]], "pypath.internals.resource.NetworkDataset": [[997, "pypath-internals-resource-networkdataset"]], "pypath.internals.resource.NetworkResource": [[998, "pypath-internals-resource-networkresource"]], "pypath.internals.resource.NetworkResourceKey": [[999, "pypath-internals-resource-networkresourcekey"]], "pypath.internals.resource.ResourceAttributes": [[1000, "pypath-internals-resource-resourceattributes"]], "pypath.legacy": [[1001, "module-pypath.legacy"]], "pypath.legacy.db_categories": [[1002, "module-pypath.legacy.db_categories"]], "pypath.legacy.db_categories.get_categories": [[1003, "pypath-legacy-db-categories-get-categories"]], "pypath.legacy.db_categories.get_category": [[1004, "pypath-legacy-db-categories-get-category"]], "pypath.log": [[1005, "pypath-log"]], "pypath.resources": [[1006, "module-pypath.resources"]], "pypath.resources.controller": [[1007, "module-pypath.resources.controller"]], "pypath.resources.controller.ResourceController": [[1008, "pypath-resources-controller-resourcecontroller"]], "pypath.resources.data": [[1009, "module-pypath.resources.data"]], "pypath.resources.data_formats": [[1010, "module-pypath.resources.data_formats"]], "pypath.resources.data_formats.activity_flow": [[1011, "pypath-resources-data-formats-activity-flow"]], "pypath.resources.data_formats.enzyme_substrate": [[1012, "pypath-resources-data-formats-enzyme-substrate"]], "pypath.resources.data_formats.interaction": [[1013, "pypath-resources-data-formats-interaction"]], "pypath.resources.data_formats.interaction_htp": [[1014, "pypath-resources-data-formats-interaction-htp"]], "pypath.resources.data_formats.pathway_bad": [[1015, "pypath-resources-data-formats-pathway-bad"]], "pypath.resources.data_formats.reaction_pc": [[1016, "pypath-resources-data-formats-reaction-pc"]], "pypath.resources.data_formats.transcription_deprecated": [[1017, "pypath-resources-data-formats-transcription-deprecated"]], "pypath.resources.data_formats.transcription_onebyone": [[1018, "pypath-resources-data-formats-transcription-onebyone"]], "pypath.resources.get_controller": [[1019, "pypath-resources-get-controller"]], "pypath.resources.licenses": [[1020, "module-pypath.resources.licenses"]], "pypath.resources.licenses.Licenses": [[1021, "pypath-resources-licenses-licenses"]], "pypath.resources.network": [[1022, "module-pypath.resources.network"]], "pypath.resources.network.choose_dataset": [[1023, "pypath-resources-network-choose-dataset"]], "pypath.resources.network.dataset_priority": [[1024, "pypath-resources-network-dataset-priority"]], "pypath.resources.network.dorothea_expand_levels": [[1025, "pypath-resources-network-dorothea-expand-levels"]], "pypath.resources.urls": [[1026, "module-pypath.resources.urls"]], "pypath.share": [[1027, "module-pypath.share"]], "pypath.share.cache": [[1028, "module-pypath.share.cache"]], "pypath.share.cache.cache_item": [[1029, "pypath-share-cache-cache-item"]], "pypath.share.cache.cache_path": [[1030, "pypath-share-cache-cache-path"]], "pypath.share.cache.default_cachedir": [[1031, "pypath-share-cache-default-cachedir"]], "pypath.share.cache.get_cachedir": [[1032, "pypath-share-cache-get-cachedir"]], "pypath.share.common": [[1033, "module-pypath.share.common"]], "pypath.share.constants": [[1034, "module-pypath.share.constants"]], "pypath.share.curl": [[1035, "module-pypath.share.curl"]], "pypath.share.curl.Curl": [[1036, "pypath-share-curl-curl"]], "pypath.share.curl.FileOpener": [[1037, "pypath-share-curl-fileopener"]], "pypath.share.curl.RemoteFile": [[1038, "pypath-share-curl-remotefile"]], "pypath.share.curl.cache_delete_off": [[1039, "pypath-share-curl-cache-delete-off"]], "pypath.share.curl.cache_delete_on": [[1040, "pypath-share-curl-cache-delete-on"]], "pypath.share.curl.cache_off": [[1041, "pypath-share-curl-cache-off"]], "pypath.share.curl.cache_on": [[1042, "pypath-share-curl-cache-on"]], "pypath.share.curl.cache_print_off": [[1043, "pypath-share-curl-cache-print-off"]], "pypath.share.curl.cache_print_on": [[1044, "pypath-share-curl-cache-print-on"]], "pypath.share.curl.debug_off": [[1045, "pypath-share-curl-debug-off"]], "pypath.share.curl.debug_on": [[1046, "pypath-share-curl-debug-on"]], "pypath.share.curl.dryrun_off": [[1047, "pypath-share-curl-dryrun-off"]], "pypath.share.curl.dryrun_on": [[1048, "pypath-share-curl-dryrun-on"]], "pypath.share.curl.is_url": [[1049, "pypath-share-curl-is-url"]], "pypath.share.curl.preserve_off": [[1050, "pypath-share-curl-preserve-off"]], "pypath.share.curl.preserve_on": [[1051, "pypath-share-curl-preserve-on"]], "pypath.share.progress": [[1052, "module-pypath.share.progress"]], "pypath.share.progress.Progress": [[1053, "pypath-share-progress-progress"]], "pypath.share.session": [[1054, "module-pypath.share.session"]], "pypath.share.settings": [[1055, "module-pypath.share.settings"]], "pypath.utils": [[1056, "module-pypath.utils"]], "pypath.utils.go": [[1057, "module-pypath.utils.go"]], "pypath.utils.go.GOAnnotation": [[1058, "pypath-utils-go-goannotation"]], "pypath.utils.go.GOCustomAnnotation": [[1059, "pypath-utils-go-gocustomannotation"]], "pypath.utils.go.GeneOntology": [[1060, "pypath-utils-go-geneontology"]], "pypath.utils.go.annotate": [[1061, "pypath-utils-go-annotate"]], "pypath.utils.go.get_db": [[1062, "pypath-utils-go-get-db"]], "pypath.utils.go.init_db": [[1063, "pypath-utils-go-init-db"]], "pypath.utils.go.load_go": [[1064, "pypath-utils-go-load-go"]], "pypath.utils.mapping": [[1065, "module-pypath.utils.mapping"]], "pypath.utils.mapping.MapReader": [[1066, "pypath-utils-mapping-mapreader"]], "pypath.utils.mapping.Mapper": [[1067, "pypath-utils-mapping-mapper"]], "pypath.utils.mapping.MappingTable": [[1068, "pypath-utils-mapping-mappingtable"]], "pypath.utils.mapping.MappingTableKey": [[1069, "pypath-utils-mapping-mappingtablekey"]], "pypath.utils.mapping.UNIPROT_ID_TYPES": [[1070, "pypath-utils-mapping-uniprot-id-types"]], "pypath.utils.mapping.get_mapper": [[1071, "pypath-utils-mapping-get-mapper"]], "pypath.utils.mapping.guess_type": [[1072, "pypath-utils-mapping-guess-type"]], "pypath.utils.mapping.id_from_label": [[1073, "pypath-utils-mapping-id-from-label"]], "pypath.utils.mapping.id_from_label0": [[1074, "pypath-utils-mapping-id-from-label0"]], "pypath.utils.mapping.id_types": [[1075, "pypath-utils-mapping-id-types"]], "pypath.utils.mapping.init": [[1076, "pypath-utils-mapping-init"]], "pypath.utils.mapping.label": [[1077, "pypath-utils-mapping-label"]], "pypath.utils.mapping.map_name": [[1078, "pypath-utils-mapping-map-name"]], "pypath.utils.mapping.map_name0": [[1079, "pypath-utils-mapping-map-name0"]], "pypath.utils.mapping.map_names": [[1080, "pypath-utils-mapping-map-names"]], "pypath.utils.mapping.mapping_tables": [[1081, "pypath-utils-mapping-mapping-tables"]], "pypath.utils.mapping.translation_df": [[1082, "pypath-utils-mapping-translation-df"]], "pypath.utils.mapping.translation_dict": [[1083, "pypath-utils-mapping-translation-dict"]], "pypath.utils.metabo": [[1084, "module-pypath.utils.metabo"]], "pypath.utils.orthology": [[1085, "module-pypath.utils.orthology"]], "pypath.utils.orthology.EnsemblOrtholog": [[1086, "pypath-utils-orthology-ensemblortholog"]], "pypath.utils.orthology.EnsemblOrthology": [[1087, "pypath-utils-orthology-ensemblorthology"]], "pypath.utils.orthology.HomologeneOrtholog": [[1088, "pypath-utils-orthology-homologeneortholog"]], "pypath.utils.orthology.HomologeneOrthology": [[1089, "pypath-utils-orthology-homologeneorthology"]], "pypath.utils.orthology.OmaOrtholog": [[1090, "pypath-utils-orthology-omaortholog"]], "pypath.utils.orthology.OmaOrthology": [[1091, "pypath-utils-orthology-omaorthology"]], "pypath.utils.orthology.OrthologBase": [[1092, "pypath-utils-orthology-orthologbase"]], "pypath.utils.orthology.OrthologMeta": [[1093, "pypath-utils-orthology-orthologmeta"]], "pypath.utils.orthology.OrthologyManager": [[1094, "pypath-utils-orthology-orthologymanager"]], "pypath.utils.orthology.OrthologyTableKey": [[1095, "pypath-utils-orthology-orthologytablekey"]], "pypath.utils.orthology.ProteinOrthology": [[1096, "pypath-utils-orthology-proteinorthology"]], "pypath.utils.orthology.Proteomes": [[1097, "pypath-utils-orthology-proteomes"]], "pypath.utils.orthology.PtmOrthology": [[1098, "pypath-utils-orthology-ptmorthology"]], "pypath.utils.orthology.SequenceContainer": [[1099, "pypath-utils-orthology-sequencecontainer"]], "pypath.utils.orthology.get_df": [[1100, "pypath-utils-orthology-get-df"]], "pypath.utils.orthology.get_dict": [[1101, "pypath-utils-orthology-get-dict"]], "pypath.utils.orthology.get_manager": [[1102, "pypath-utils-orthology-get-manager"]], "pypath.utils.orthology.init": [[1103, "pypath-utils-orthology-init"]], "pypath.utils.orthology.translate": [[1104, "pypath-utils-orthology-translate"]], "pypath.utils.orthology.translate_df": [[1105, "pypath-utils-orthology-translate-df"]], "pypath.utils.pdb": [[1106, "module-pypath.utils.pdb"]], "pypath.utils.pdb.Residue": [[1107, "pypath-utils-pdb-residue"]], "pypath.utils.pdb.ResidueMapper": [[1108, "pypath-utils-pdb-residuemapper"]], "pypath.utils.pdb.Segment": [[1109, "pypath-utils-pdb-segment"]], "pypath.utils.pdb.residue_pdb": [[1110, "pypath-utils-pdb-residue-pdb"]], "pypath.utils.proteomicsdb": [[1111, "module-pypath.utils.proteomicsdb"]], "pypath.utils.proteomicsdb.ProteomicsDB": [[1112, "pypath-utils-proteomicsdb-proteomicsdb"]], "pypath.utils.pyreact": [[1113, "module-pypath.utils.pyreact"]], "pypath.utils.pyreact.AttributeHandler": [[1114, "pypath-utils-pyreact-attributehandler"]], "pypath.utils.pyreact.BioPaxReader": [[1115, "pypath-utils-pyreact-biopaxreader"]], "pypath.utils.pyreact.Complex": [[1116, "pypath-utils-pyreact-complex"]], "pypath.utils.pyreact.ComplexVariations": [[1117, "pypath-utils-pyreact-complexvariations"]], "pypath.utils.pyreact.Control": [[1118, "pypath-utils-pyreact-control"]], "pypath.utils.pyreact.Entity": [[1119, "pypath-utils-pyreact-entity"]], "pypath.utils.pyreact.EntitySet": [[1120, "pypath-utils-pyreact-entityset"]], "pypath.utils.pyreact.Intersecting": [[1121, "pypath-utils-pyreact-intersecting"]], "pypath.utils.pyreact.Protein": [[1122, "pypath-utils-pyreact-protein"]], "pypath.utils.pyreact.ProteinFamily": [[1123, "pypath-utils-pyreact-proteinfamily"]], "pypath.utils.pyreact.PyReact": [[1124, "pypath-utils-pyreact-pyreact"]], "pypath.utils.pyreact.Reaction": [[1125, "pypath-utils-pyreact-reaction"]], "pypath.utils.pyreact.ReactionSide": [[1126, "pypath-utils-pyreact-reactionside"]], "pypath.utils.pyreact.Reference": [[1127, "pypath-utils-pyreact-reference"]], "pypath.utils.reflists": [[1128, "module-pypath.utils.reflists"]], "pypath.utils.reflists.ReferenceListManager": [[1129, "pypath-utils-reflists-referencelistmanager"]], "pypath.utils.reflists.check": [[1130, "pypath-utils-reflists-check"]], "pypath.utils.reflists.get_manager": [[1131, "pypath-utils-reflists-get-manager"]], "pypath.utils.reflists.get_reflist": [[1132, "pypath-utils-reflists-get-reflist"]], "pypath.utils.reflists.init": [[1133, "pypath-utils-reflists-init"]], "pypath.utils.reflists.is_not": [[1134, "pypath-utils-reflists-is-not"]], "pypath.utils.reflists.select": [[1135, "pypath-utils-reflists-select"]], "pypath.utils.residues": [[1136, "module-pypath.utils.residues"]], "pypath.utils.residues.ResidueMapper": [[1137, "pypath-utils-residues-residuemapper"]], "pypath.utils.seq": [[1138, "module-pypath.utils.seq"]], "pypath.utils.seq.Pfam": [[1139, "pypath-utils-seq-pfam"]], "pypath.utils.seq.Resource": [[1140, "pypath-utils-seq-resource"]], "pypath.utils.seq.Seq": [[1141, "pypath-utils-seq-seq"]], "pypath.utils.seq.get_isoforms": [[1142, "pypath-utils-seq-get-isoforms"]], "pypath.utils.seq.read_fasta": [[1143, "pypath-utils-seq-read-fasta"]], "pypath.utils.seq.swissprot_seq": [[1144, "pypath-utils-seq-swissprot-seq"]], "pypath.utils.taxonomy": [[1145, "module-pypath.utils.taxonomy"]], "pypath.utils.taxonomy.ensure_common_name": [[1146, "pypath-utils-taxonomy-ensure-common-name"]], "pypath.utils.taxonomy.ensure_ensembl_name": [[1147, "pypath-utils-taxonomy-ensure-ensembl-name"]], "pypath.utils.taxonomy.ensure_latin_name": [[1148, "pypath-utils-taxonomy-ensure-latin-name"]], "pypath.utils.taxonomy.ensure_ncbi_tax_id": [[1149, "pypath-utils-taxonomy-ensure-ncbi-tax-id"]], "pypath.utils.taxonomy.get_db": [[1150, "pypath-utils-taxonomy-get-db"]], "pypath.utils.taxonomy.init_db": [[1151, "pypath-utils-taxonomy-init-db"]], "pypath.utils.taxonomy.short_latin_names": [[1152, "pypath-utils-taxonomy-short-latin-names"]], "pypath.utils.taxonomy.shorten_latin_name": [[1153, "pypath-utils-taxonomy-shorten-latin-name"]], "pypath.utils.taxonomy.taxid_from_common_name": [[1154, "pypath-utils-taxonomy-taxid-from-common-name"]], "pypath.utils.taxonomy.taxid_from_dbptm_taxon_name": [[1155, "pypath-utils-taxonomy-taxid-from-dbptm-taxon-name"]], "pypath.utils.taxonomy.taxid_from_ensembl_name": [[1156, "pypath-utils-taxonomy-taxid-from-ensembl-name"]], "pypath.utils.taxonomy.taxid_from_latin_name": [[1157, "pypath-utils-taxonomy-taxid-from-latin-name"]], "pypath.utils.taxonomy.taxid_from_nonstandard": [[1158, "pypath-utils-taxonomy-taxid-from-nonstandard"]], "pypath.utils.taxonomy.uniprot_taxid": [[1159, "pypath-utils-taxonomy-uniprot-taxid"]], "pypath.utils.unichem": [[1160, "module-pypath.utils.unichem"]], "pypath.utils.unichem.Unichem": [[1161, "pypath-utils-unichem-unichem"]], "pypath.utils.uniprot": [[1162, "module-pypath.utils.uniprot"]], "pypath.utils.uniprot.UniprotProtein": [[1163, "pypath-utils-uniprot-uniprotprotein"]], "pypath.utils.uniprot.ac": [[1164, "pypath-utils-uniprot-ac"]], "pypath.utils.uniprot.activity_regulation": [[1165, "pypath-utils-uniprot-activity-regulation"]], "pypath.utils.uniprot.activity_regulation_with_xrefs": [[1166, "pypath-utils-uniprot-activity-regulation-with-xrefs"]], "pypath.utils.uniprot.alternative_products": [[1167, "pypath-utils-uniprot-alternative-products"]], "pypath.utils.uniprot.alternative_products_with_xrefs": [[1168, "pypath-utils-uniprot-alternative-products-with-xrefs"]], "pypath.utils.uniprot.browse": [[1169, "pypath-utils-uniprot-browse"]], "pypath.utils.uniprot.catalytic_activity": [[1170, "pypath-utils-uniprot-catalytic-activity"]], "pypath.utils.uniprot.catalytic_activity_with_xrefs": [[1171, "pypath-utils-uniprot-catalytic-activity-with-xrefs"]], "pypath.utils.uniprot.collect": [[1172, "pypath-utils-uniprot-collect"]], "pypath.utils.uniprot.databases": [[1173, "pypath-utils-uniprot-databases"]], "pypath.utils.uniprot.disease": [[1174, "pypath-utils-uniprot-disease"]], "pypath.utils.uniprot.disease_with_xrefs": [[1175, "pypath-utils-uniprot-disease-with-xrefs"]], "pypath.utils.uniprot.ec": [[1176, "pypath-utils-uniprot-ec"]], "pypath.utils.uniprot.features_table": [[1177, "pypath-utils-uniprot-features-table"]], "pypath.utils.uniprot.full_name": [[1178, "pypath-utils-uniprot-full-name"]], "pypath.utils.uniprot.function": [[1179, "pypath-utils-uniprot-function"]], "pypath.utils.uniprot.function_genecards": [[1180, "pypath-utils-uniprot-function-genecards"]], "pypath.utils.uniprot.function_or_genecards": [[1181, "pypath-utils-uniprot-function-or-genecards"]], "pypath.utils.uniprot.function_with_genecards": [[1182, "pypath-utils-uniprot-function-with-genecards"]], "pypath.utils.uniprot.function_with_xrefs": [[1183, "pypath-utils-uniprot-function-with-xrefs"]], "pypath.utils.uniprot.genesymbol": [[1184, "pypath-utils-uniprot-genesymbol"]], "pypath.utils.uniprot.has_tag": [[1185, "pypath-utils-uniprot-has-tag"]], "pypath.utils.uniprot.id": [[1186, "pypath-utils-uniprot-id"]], "pypath.utils.uniprot.info": [[1187, "pypath-utils-uniprot-info"]], "pypath.utils.uniprot.info_section": [[1188, "pypath-utils-uniprot-info-section"]], "pypath.utils.uniprot.interaction": [[1189, "pypath-utils-uniprot-interaction"]], "pypath.utils.uniprot.interaction_with_xrefs": [[1190, "pypath-utils-uniprot-interaction-with-xrefs"]], "pypath.utils.uniprot.is_reviewed": [[1191, "pypath-utils-uniprot-is-reviewed"]], "pypath.utils.uniprot.itertag": [[1192, "pypath-utils-uniprot-itertag"]], "pypath.utils.uniprot.keywords": [[1193, "pypath-utils-uniprot-keywords"]], "pypath.utils.uniprot.keywords_with_xrefs": [[1194, "pypath-utils-uniprot-keywords-with-xrefs"]], "pypath.utils.uniprot.length": [[1195, "pypath-utils-uniprot-length"]], "pypath.utils.uniprot.lengths": [[1196, "pypath-utils-uniprot-lengths"]], "pypath.utils.uniprot.load": [[1197, "pypath-utils-uniprot-load"]], "pypath.utils.uniprot.organism": [[1198, "pypath-utils-uniprot-organism"]], "pypath.utils.uniprot.print_features": [[1199, "pypath-utils-uniprot-print-features"]], "pypath.utils.uniprot.ptm": [[1200, "pypath-utils-uniprot-ptm"]], "pypath.utils.uniprot.ptm_with_xrefs": [[1201, "pypath-utils-uniprot-ptm-with-xrefs"]], "pypath.utils.uniprot.query": [[1202, "pypath-utils-uniprot-query"]], "pypath.utils.uniprot.reload": [[1203, "pypath-utils-uniprot-reload"]], "pypath.utils.uniprot.remove_xrefs": [[1204, "pypath-utils-uniprot-remove-xrefs"]], "pypath.utils.uniprot.sequence": [[1205, "pypath-utils-uniprot-sequence"]], "pypath.utils.uniprot.sequence_caution": [[1206, "pypath-utils-uniprot-sequence-caution"]], "pypath.utils.uniprot.sequence_caution_with_xrefs": [[1207, "pypath-utils-uniprot-sequence-caution-with-xrefs"]], "pypath.utils.uniprot.similarity": [[1208, "pypath-utils-uniprot-similarity"]], "pypath.utils.uniprot.similarity_with_xrefs": [[1209, "pypath-utils-uniprot-similarity-with-xrefs"]], "pypath.utils.uniprot.subcellular_location": [[1210, "pypath-utils-uniprot-subcellular-location"]], "pypath.utils.uniprot.subcellular_location_with_xrefs": [[1211, "pypath-utils-uniprot-subcellular-location-with-xrefs"]], "pypath.utils.uniprot.subunit": [[1212, "pypath-utils-uniprot-subunit"]], "pypath.utils.uniprot.subunit_with_xrefs": [[1213, "pypath-utils-uniprot-subunit-with-xrefs"]], "pypath.utils.uniprot.tissue_specificity": [[1214, "pypath-utils-uniprot-tissue-specificity"]], "pypath.utils.uniprot.tissue_specificity_with_xrefs": [[1215, "pypath-utils-uniprot-tissue-specificity-with-xrefs"]], "pypath.utils.uniprot.update_databases": [[1216, "pypath-utils-uniprot-update-databases"]], "pypath.utils.uniprot.update_info": [[1217, "pypath-utils-uniprot-update-info"]], "pypath.utils.uniprot.web_resource": [[1218, "pypath-utils-uniprot-web-resource"]], "pypath.utils.uniprot.web_resource_with_xrefs": [[1219, "pypath-utils-uniprot-web-resource-with-xrefs"]], "pypath.utils.uniprot.weight": [[1220, "pypath-utils-uniprot-weight"]], "pypath.utils.uniprot.weights": [[1221, "pypath-utils-uniprot-weights"]], "pypath.visual": [[1222, "module-pypath.visual"]], "pypath.visual.drawing": [[1223, "module-pypath.visual.drawing"]], "pypath.visual.drawing.InterSet": [[1224, "pypath-visual-drawing-interset"]], "pypath.visual.drawing.Plot": [[1225, "pypath-visual-drawing-plot"]], "pypath.visual.igraph_drawing": [[1226, "module-pypath.visual.igraph_drawing"]], "pypath.visual.igraph_drawing.AbstractCairoGraphDrawer": [[1227, "pypath-visual-igraph-drawing-abstractcairographdrawer"]], "pypath.visual.igraph_drawing.ArrowEdgeDrawer": [[1228, "pypath-visual-igraph-drawing-arrowedgedrawer"]], "pypath.visual.igraph_drawing.DefaultGraphDrawerFFsupport": [[1229, "pypath-visual-igraph-drawing-defaultgraphdrawerffsupport"]], "pypath.visual.igraph_drawing.DefaultVertexDrawer": [[1230, "pypath-visual-igraph-drawing-defaultvertexdrawer"]], "pypath.visual.igraph_drawing.TextDrawer": [[1231, "pypath-visual-igraph-drawing-textdrawer"]], "pypath.visual.igraph_drawing.edge": [[1232, "module-pypath.visual.igraph_drawing.edge"]], "pypath.visual.igraph_drawing.edge.AbstractEdgeDrawer": [[1233, "pypath-visual-igraph-drawing-edge-abstractedgedrawer"]], "pypath.visual.igraph_drawing.edge.AlphaVaryingEdgeDrawer": [[1234, "pypath-visual-igraph-drawing-edge-alphavaryingedgedrawer"]], "pypath.visual.igraph_drawing.edge.ArrowEdgeDrawer": [[1235, "pypath-visual-igraph-drawing-edge-arrowedgedrawer"]], "pypath.visual.igraph_drawing.edge.DarkToLightEdgeDrawer": [[1236, "pypath-visual-igraph-drawing-edge-darktolightedgedrawer"]], "pypath.visual.igraph_drawing.edge.LightToDarkEdgeDrawer": [[1237, "pypath-visual-igraph-drawing-edge-lighttodarkedgedrawer"]], "pypath.visual.igraph_drawing.edge.TaperedEdgeDrawer": [[1238, "pypath-visual-igraph-drawing-edge-taperededgedrawer"]], "pypath.visual.igraph_drawing.vertex": [[1239, "module-pypath.visual.igraph_drawing.vertex"]], "pypath.visual.igraph_drawing.vertex.AbstractCairoDrawer": [[1240, "pypath-visual-igraph-drawing-vertex-abstractcairodrawer"]], "pypath.visual.igraph_drawing.vertex.AbstractCairoVertexDrawer": [[1241, "pypath-visual-igraph-drawing-vertex-abstractcairovertexdrawer"]], "pypath.visual.igraph_drawing.vertex.AbstractDrawer": [[1242, "pypath-visual-igraph-drawing-vertex-abstractdrawer"]], "pypath.visual.igraph_drawing.vertex.AbstractVertexDrawer": [[1243, "pypath-visual-igraph-drawing-vertex-abstractvertexdrawer"]], "pypath.visual.igraph_drawing.vertex.DefaultVertexDrawer": [[1244, "pypath-visual-igraph-drawing-vertex-defaultvertexdrawer"]], "Contents": [[1245, "contents"]], "Welcome to pypath!": [[1246, "welcome-to-pypath"]], "OmniPath": [[1246, "omnipath"]], "Do you need pypath?": [[1246, "do-you-need-pypath"]], "Installation": [[1246, "installation"]], "Docs": [[1246, "docs"]], "Get help": [[1246, "get-help"]], "Features": [[1246, "features"]], "Integrated databases": [[1246, "integrated-databases"]], "Database management": [[1246, "database-management"]], "Further modules in pypath": [[1246, "further-modules-in-pypath"]], "ID conversion": [[1246, "id-conversion"]], "Homology translation": [[1246, "homology-translation"]], "FAQ": [[1246, "faq"]], "Contact": [[1246, "contact"]], "Impressum": [[1246, "impressum"]], "History and releases": [[1246, "history-and-releases"]], "The pypath book": [[1247, "The-pypath-book"]], "Introduction": [[1247, "Introduction"]], "Build, load and save databases": [[1247, "Build,-load-and-save-databases"]], "The OmniPath app": [[1247, "The-OmniPath-app"]], "Built-in database definitions": [[1247, "Built-in-database-definitions"]], "Networks": [[1247, "Networks"]], "Strictly literature curated network": [[1247, "Strictly-literature-curated-network"]], "The OmniPath network with extra activity flow, enzyme-substrate and ligand-receptor interactions": [[1247, "The-OmniPath-network-with-extra-activity-flow,-enzyme-substrate-and-ligand-receptor-interactions"]], "Transcriptional regulation network from DoRothEA and other resources": [[1247, "Transcriptional-regulation-network-from-DoRothEA-and-other-resources"]], "Literature curated miRNA post-transcriptional regulation network": [[1247, "Literature-curated-miRNA-post-transcriptional-regulation-network"]], "Transcriptional regulation of miRNA": [[1247, "Transcriptional-regulation-of-miRNA"]], "lncRNA-mRNA interactions": [[1247, "lncRNA-mRNA-interactions"]], "Small molecule-protein interactions": [[1247, "Small-molecule-protein-interactions"]], "Enzyme-substrate relationships": [[1247, "Enzyme-substrate-relationships"]], "Protein complexes": [[1247, "Protein-complexes"], [1247, "id2"]], "Annotations": [[1247, "Annotations"], [1247, "id1"], [1250, "annotations"]], "Inter-cellular communication roles": [[1247, "Inter-cellular-communication-roles"]], "Data directly from the original resources": [[1247, "Data-directly-from-the-original-resources"]], "Interesting resources": [[1247, "Interesting-resources"]], "RaMP": [[1247, "RaMP"]], "TL;DR": [[1247, "TL;DR"]], "HMDB (Human Metabolome Database)": [[1247, "HMDB-(Human-Metabolome-Database)"]], "Direct access to HMDB data": [[1247, "Direct-access-to-HMDB-data"]], "Higher level access to HMDB data": [[1247, "Higher-level-access-to-HMDB-data"]], "ID translation with HMDB": [[1247, "ID-translation-with-HMDB"]], "NCBI E-Utils": [[1247, "NCBI-E-Utils"]], "Download management": [[1247, "Download-management"]], "Cache management and customization": [[1247, "Cache-management-and-customization"]], "Download failures": [[1247, "Download-failures"]], "Corrupted cache content": [[1247, "Corrupted-cache-content"]], "Network communication issues: look into the curl debug log": [[1247, "Network-communication-issues:-look-into-the-curl-debug-log"]], "Timeouts": [[1247, "Timeouts"]], "Access and inspect the Curl object": [[1247, "Access-and-inspect-the-Curl-object"]], "Is it failing only for you?": [[1247, "Is-it-failing-only-for-you?"]], "Read the log": [[1247, "Read-the-log"]], "TLS (SSL, HTTPS) errors": [[1247, "TLS-(SSL,-HTTPS)-errors"]], "Resources": [[1247, "Resources"]], "Licenses": [[1247, "Licenses"]], "Example: build a network for commercial use": [[1247, "Example:-build-a-network-for-commercial-use"]], "Resource information": [[1247, "Resource-information"]], "Resource definitions for a certain database or dataset": [[1247, "Resource-definitions-for-a-certain-database-or-dataset"]], "Building networks": [[1247, "Building-networks"]], "Which network datasets are pre-defined in pypath?": [[1247, "Which-network-datasets-are-pre-defined-in-pypath?"]], "The Network object": [[1247, "The-Network-object"]], "Network in pandas.DataFrame": [[1247, "Network-in-pandas.DataFrame"]], "Self interactions (loop edges) in the network": [[1247, "Self-interactions-(loop-edges)-in-the-network"]], "Molecular complexes in the network": [[1247, "Molecular-complexes-in-the-network"]], "Translating identifiers": [[1247, "Translating-identifiers"]], "Pre-defined ID translation tables": [[1247, "Pre-defined-ID-translation-tables"]], "Direct access to ID translation tables": [[1247, "Direct-access-to-ID-translation-tables"]], "Orthology translation": [[1247, "Orthology-translation"]], "Orthology translation tables as dictionaries": [[1247, "Orthology-translation-tables-as-dictionaries"]], "Orthology translation data frames": [[1247, "Orthology-translation-data-frames"]], "Taxonomy": [[1247, "Taxonomy"]], "Translating to NCBI Taxonomy, scientific names and common names": [[1247, "Translating-to-NCBI-Taxonomy,-scientific-names-and-common-names"]], "Organism from UniProt ID": [[1247, "Organism-from-UniProt-ID"]], "UniProt": [[1247, "UniProt"]], "The UniProt input module": [[1247, "The-UniProt-input-module"]], "All UniProt IDs for one organism": [[1247, "All-UniProt-IDs-for-one-organism"]], "UniProt ID format validation": [[1247, "UniProt-ID-format-validation"]], "UniProt ID validation": [[1247, "UniProt-ID-validation"]], "Single UniProt protein datasheet": [[1247, "Single-UniProt-protein-datasheet"]], "History of UniProt records": [[1247, "History-of-UniProt-records"]], "UniProt REST API": [[1247, "UniProt-REST-API"]], "Processed UniProt annotations": [[1247, "Processed-UniProt-annotations"]], "The UniProt utils module": [[1247, "The-UniProt-utils-module"]], "Datasheets": [[1247, "Datasheets"]], "Tables": [[1247, "Tables"]], "Sanitizing UniProt IDs": [[1247, "Sanitizing-UniProt-IDs"]], "Enzyme-substrate interactions": [[1247, "Enzyme-substrate-interactions"], [1250, "enzyme-substrate-interactions"]], "Enzyme-substrate objects": [[1247, "Enzyme-substrate-objects"]], "Enzyme-substrate data frame": [[1247, "Enzyme-substrate-data-frame"]], "Protein sequences": [[1247, "Protein-sequences"]], "Load a single annotation resource": [[1247, "Load-a-single-annotation-resource"]], "Load the full annotations database by the database manager": [[1247, "Load-the-full-annotations-database-by-the-database-manager"]], "Load only selected annotations": [[1247, "Load-only-selected-annotations"]], "Data frames of annotations": [[1247, "Data-frames-of-annotations"]], "Inter-cellular signaling roles": [[1247, "Inter-cellular-signaling-roles"]], "Build an intercellular communication network": [[1247, "Build-an-intercellular-communication-network"]], "Quantitative overview of intercell annotations": [[1247, "Quantitative-overview-of-intercell-annotations"]], "Intercell database as data frame": [[1247, "Intercell-database-as-data-frame"]], "Browse intercell categories": [[1247, "Browse-intercell-categories"]], "Gene Ontology": [[1247, "Gene-Ontology"]], "Protein complex objects": [[1247, "Protein-complex-objects"]], "Protein complex data frame": [[1247, "Protein-complex-data-frame"]], "Saving datasets as pickles": [[1247, "Saving-datasets-as-pickles"]], "Log messages and sessions": [[1247, "Log-messages-and-sessions"]], "Basic info about the session": [[1247, "Basic-info-about-the-session"]], "Read the log file": [[1247, "Read-the-log-file"]], "Logging to the console": [[1247, "Logging-to-the-console"]], "Disable logging": [[1247, "Disable-logging"]], "Write to the log": [[1247, "Write-to-the-log"]], "Sending a single message": [[1247, "Sending-a-single-message"]], "Connect a module or class to the pypath logger": [[1247, "Connect-a-module-or-class-to-the-pypath-logger"]], "BEL export": [[1247, "BEL-export"]], "CellPhoneDB export": [[1247, "CellPhoneDB-export"]], "The legacy igraph-based network object": [[1247, "The-legacy-igraph-based-network-object"]], "I just want a network quickly and play around with pypath": [[1247, "I-just-want-a-network-quickly-and-play-around-with-pypath"]], "How do I build networks from any data with pypath?": [[1247, "How-do-I-build-networks-from-any-data-with-pypath?"]], "Defining input formats": [[1247, "Defining-input-formats"]], "Creating PyPath object and loading the 2 test files": [[1247, "Creating-PyPath-object-and-loading-the-2-test-files"]], "Structure of the legacy network object": [[1247, "Structure-of-the-legacy-network-object"]], "Directions and signs": [[1247, "Directions-and-signs"]], "Accessing nodes in the network": [[1247, "Accessing-nodes-in-the-network"]], "Querying relationships with our without causality": [[1247, "Querying-relationships-with-our-without-causality"]], "Accessing edges by identifiers": [[1247, "Accessing-edges-by-identifiers"]], "Literature references": [[1247, "Literature-references"]], "Plotting the network with igraph": [[1247, "Plotting-the-network-with-igraph"]], "Reference": [[1248, "reference"]], "How to navigate the reference?": [[1248, "how-to-navigate-the-reference"]], "Release history": [[1249, "release-history"]], "0.1.0": [[1249, "id1"]], "0.2.0": [[1249, "id2"]], "0.3.0": [[1249, "id3"]], "0.4.0": [[1249, "id4"]], "0.5.0": [[1249, "id5"]], "0.5.32": [[1249, "id6"]], "0.6.31": [[1249, "id7"]], "0.7.0": [[1249, "id8"]], "0.7.74": [[1249, "id9"]], "0.7.93": [[1249, "id10"]], "0.7.110": [[1249, "id11"]], "0.8": [[1249, "id12"]], "0.9": [[1249, "id13"]], "0.10.0": [[1249, "id14"]], "0.11.0": [[1249, "id15"]], "0.12.0": [[1249, "id16"]], "0.13.0": [[1249, "id17"]], "0.14.0": [[1249, "id18"]], "Upcoming": [[1249, "upcoming"]], "Webservice": [[1250, "webservice"]], "Query types": [[1250, "query-types"]], "Interaction datasets": [[1250, "interaction-datasets"]], "Mouse and rat": [[1250, "mouse-and-rat"]], "Examples": [[1250, "examples"]], "Molecular interaction network": [[1250, "molecular-interaction-network"]], "Molecular complexes": [[1250, "molecular-complexes"]], "Roles in inter-cellular communication": [[1250, "roles-in-inter-cellular-communication"]], "Exploring possible parameters": [[1250, "exploring-possible-parameters"]]}, "indexentries": {"module": [[0, "module-pypath"], [1, "module-pypath.core"], [2, "module-pypath.core.annot"], [95, "module-pypath.core.attrs"], [97, "module-pypath.core.common"], [99, "module-pypath.core.complex"], [121, "module-pypath.core.entity"], [125, "module-pypath.core.enz_sub"], [131, "module-pypath.core.evidence"], [134, "module-pypath.core.interaction"], [138, "module-pypath.core.intercell"], [142, "module-pypath.core.intercell_annot"], [144, "module-pypath.core.network"], [150, "module-pypath.data"], [153, "module-pypath.inputs"], [154, "module-pypath.inputs.abs"], [156, "module-pypath.inputs.acsn"], [159, "module-pypath.inputs.adhesome"], [162, "module-pypath.inputs.adrecs"], [172, "module-pypath.inputs.almen2009"], [174, "module-pypath.inputs.baccin2019"], [177, "module-pypath.inputs.biogps"], [183, "module-pypath.inputs.biogrid"], [186, "module-pypath.inputs.biomart"], [192, "module-pypath.inputs.biomodels"], [198, "module-pypath.inputs.ca1"], [200, "module-pypath.inputs.cancercellmap"], [202, "module-pypath.inputs.cancerdrugsdb"], [206, "module-pypath.inputs.cancersea"], [208, "module-pypath.inputs.cell"], [210, "module-pypath.inputs.cellcall"], [215, "module-pypath.inputs.cellcellinteractions"], [217, "module-pypath.inputs.cellchatdb"], [223, "module-pypath.inputs.cellinker"], [235, "module-pypath.inputs.cellphonedb"], [242, "module-pypath.inputs.celltalkdb"], [246, "module-pypath.inputs.celltypist"], [248, "module-pypath.inputs.chembl"], [256, "module-pypath.inputs.clinvar"], [259, "module-pypath.inputs.collectri"], [262, "module-pypath.inputs.common"], [269, "module-pypath.inputs.compath"], [271, "module-pypath.inputs.compleat"], [274, "module-pypath.inputs.complexportal"], [276, "module-pypath.inputs.comppi"], [279, "module-pypath.inputs.connectomedb"], [282, "module-pypath.inputs.corum"], [284, "module-pypath.inputs.cosmic"], [286, "module-pypath.inputs.cpad"], [290, "module-pypath.inputs.cpdb"], [293, "module-pypath.inputs.credentials"], [295, "module-pypath.inputs.csa"], [297, "module-pypath.inputs.cspa"], [301, "module-pypath.inputs.ctdbase"], [304, "module-pypath.inputs.cytosig"], [307, "module-pypath.inputs.dbptm"], [311, "module-pypath.inputs.ddinter"], [317, "module-pypath.inputs.deathdomain"], [320, "module-pypath.inputs.depod"], [323, "module-pypath.inputs.dgidb"], [327, "module-pypath.inputs.dip"], [330, "module-pypath.inputs.diseases"], [338, "module-pypath.inputs.domino"], [343, "module-pypath.inputs.dorothea"], [354, "module-pypath.inputs.drugbank"], [361, "module-pypath.inputs.drugcentral"], [365, "module-pypath.inputs.ebi"], [367, "module-pypath.inputs.elm"], [372, "module-pypath.inputs.embopress"], [374, "module-pypath.inputs.embrace"], [379, "module-pypath.inputs.encode"], [381, "module-pypath.inputs.ensembl"], [383, "module-pypath.inputs.eutils"], [385, "module-pypath.inputs.exocarta"], [388, "module-pypath.inputs.expasy"], [391, "module-pypath.inputs.genecards"], [396, "module-pypath.inputs.go"], [418, "module-pypath.inputs.gpcrdb"], [420, "module-pypath.inputs.graphviz"], [422, "module-pypath.inputs.guide2pharma"], [426, "module-pypath.inputs.gutmgene"], [431, "module-pypath.inputs.havugimana"], [434, "module-pypath.inputs.hgnc"], [436, "module-pypath.inputs.hippie"], [438, "module-pypath.inputs.hmdb"], [439, "module-pypath.inputs.hmdb.common"], [444, "module-pypath.inputs.hmdb.metabolites"], [449, "module-pypath.inputs.hmdb.proteins"], [454, "module-pypath.inputs.hmdb.schema"], [455, "module-pypath.inputs.hmdb.schema.common"], [457, "module-pypath.inputs.hmdb.schema.metabolites"], [458, "module-pypath.inputs.hmdb.schema.proteins"], [459, "module-pypath.inputs.hmdb.structures"], [461, "module-pypath.inputs.hmdb.visual"], [464, "module-pypath.inputs.hmdb.xml"], [466, "module-pypath.inputs.homologene"], [470, "module-pypath.inputs.hpmr"], [476, "module-pypath.inputs.hpo"], [481, "module-pypath.inputs.hprd"], [486, "module-pypath.inputs.htri"], [488, "module-pypath.inputs.humancellmap"], [490, "module-pypath.inputs.humap"], [493, "module-pypath.inputs.humsavar"], [495, "module-pypath.inputs.huri"], [508, "module-pypath.inputs.i3d"], [510, "module-pypath.inputs.icellnet"], [515, "module-pypath.inputs.ielm"], [518, "module-pypath.inputs.imweb"], [521, "module-pypath.inputs.innatedb"], [523, "module-pypath.inputs.instruct"], [526, "module-pypath.inputs.intact"], [528, "module-pypath.inputs.integrins"], [530, "module-pypath.inputs.interpro"], [535, "module-pypath.inputs.intogen"], [537, "module-pypath.inputs.ipi"], [539, "module-pypath.inputs.iptmnet"], [542, "module-pypath.inputs.italk"], [546, "module-pypath.inputs.kea"], [549, "module-pypath.inputs.kegg"], [559, "module-pypath.inputs.kegg_api"], [576, "module-pypath.inputs.kinasedotcom"], [578, "module-pypath.inputs.kirouac2010"], [580, "module-pypath.inputs.lambert2018"], [583, "module-pypath.inputs.laudanna"], [586, "module-pypath.inputs.li2012"], [591, "module-pypath.inputs.lincs"], [593, "module-pypath.inputs.lmpid"], [597, "module-pypath.inputs.lncdisease"], [599, "module-pypath.inputs.lncrnadb"], [601, "module-pypath.inputs.locate"], [603, "module-pypath.inputs.lrdb"], [607, "module-pypath.inputs.macrophage"], [609, "module-pypath.inputs.main"], [610, "module-pypath.inputs.matrisome"], [612, "module-pypath.inputs.matrixdb"], [618, "module-pypath.inputs.mcam"], [620, "module-pypath.inputs.membranome"], [622, "module-pypath.inputs.mimp"], [626, "module-pypath.inputs.mir2disease"], [628, "module-pypath.inputs.mirbase"], [636, "module-pypath.inputs.mirdeathdb"], [638, "module-pypath.inputs.mirecords"], [640, "module-pypath.inputs.mirtarbase"], [642, "module-pypath.inputs.mitab"], [645, "module-pypath.inputs.mppi"], [647, "module-pypath.inputs.msigdb"], [651, "module-pypath.inputs.ncrdeathdb"], [653, "module-pypath.inputs.negatome"], [655, "module-pypath.inputs.netbiol"], [658, "module-pypath.inputs.netpath"], [662, "module-pypath.inputs.offsides"], [664, "module-pypath.inputs.oma"], [667, "module-pypath.inputs.ontology"], [670, "module-pypath.inputs.opentargets"], [676, "module-pypath.inputs.opm"], [678, "module-pypath.inputs.oreganno"], [681, "module-pypath.inputs.panglaodb"], [684, "module-pypath.inputs.pathophenodb"], [687, "module-pypath.inputs.pathwaycommons"], [704, "module-pypath.inputs.pazar"], [706, "module-pypath.inputs.pdb"], [710, "module-pypath.inputs.pdzbase"], [712, "module-pypath.inputs.pepcyber"], [715, "module-pypath.inputs.pfam"], [720, "module-pypath.inputs.pharos"], [729, "module-pypath.inputs.phobius"], [731, "module-pypath.inputs.phosphatome"], [733, "module-pypath.inputs.phosphoelm"], [737, "module-pypath.inputs.phosphonetworks"], [740, "module-pypath.inputs.phosphopoint"], [743, "module-pypath.inputs.phosphosite"], [756, "module-pypath.inputs.pisa"], [760, "module-pypath.inputs.pro"], [763, "module-pypath.inputs.progeny"], [766, "module-pypath.inputs.proteinatlas"], [771, "module-pypath.inputs.proteins"], [773, "module-pypath.inputs.protmapper"], [777, "module-pypath.inputs.pubchem"], [779, "module-pypath.inputs.pubmed"], [786, "module-pypath.inputs.ramilowski2015"], [789, "module-pypath.inputs.ramp"], [796, "module-pypath.inputs.rdata"], [797, "module-pypath.inputs.reaction"], [817, "module-pypath.inputs.reactome"], [822, "module-pypath.inputs.scconnect"], [826, "module-pypath.inputs.science"], [828, "module-pypath.inputs.sider"], [837, "module-pypath.inputs.signalink"], [842, "module-pypath.inputs.signor"], [849, "module-pypath.inputs.spike"], [852, "module-pypath.inputs.stitch"], [855, "module-pypath.inputs.string"], [860, "module-pypath.inputs.surfaceome"], [862, "module-pypath.inputs.switches_elm"], [864, "module-pypath.inputs.talklr"], [868, "module-pypath.inputs.tcdb"], [872, "module-pypath.inputs.tfcensus"], [874, "module-pypath.inputs.threedcomplex"], [880, "module-pypath.inputs.threedid"], [885, "module-pypath.inputs.topdb"], [887, "module-pypath.inputs.transmir"], [889, "module-pypath.inputs.trip"], [896, "module-pypath.inputs.trrust"], [900, "module-pypath.inputs.twosides"], [902, "module-pypath.inputs.unichem"], [907, "module-pypath.inputs.uniprot"], [934, "module-pypath.inputs.uniprot_db"], [943, "module-pypath.inputs.wang"], [948, "module-pypath.inputs.wojtowicz2020"], [951, "module-pypath.inputs.zhong2015"], [953, "module-pypath.internals"], [954, "module-pypath.internals.annot_formats"], [959, "module-pypath.internals.input_formats"], [973, "module-pypath.internals.intera"], [983, "module-pypath.internals.license"], [989, "module-pypath.internals.maps"], [990, "module-pypath.internals.refs"], [993, "module-pypath.internals.resource"], [1001, "module-pypath.legacy"], [1002, "module-pypath.legacy.db_categories"], [1006, "module-pypath.resources"], [1007, "module-pypath.resources.controller"], [1009, "module-pypath.resources.data"], [1010, "module-pypath.resources.data_formats"], [1020, "module-pypath.resources.licenses"], [1022, "module-pypath.resources.network"], [1026, "module-pypath.resources.urls"], [1027, "module-pypath.share"], [1028, "module-pypath.share.cache"], [1033, "module-pypath.share.common"], [1034, "module-pypath.share.constants"], [1035, "module-pypath.share.curl"], [1052, "module-pypath.share.progress"], [1054, "module-pypath.share.session"], [1055, "module-pypath.share.settings"], [1056, "module-pypath.utils"], [1057, "module-pypath.utils.go"], [1065, "module-pypath.utils.mapping"], [1084, "module-pypath.utils.metabo"], [1085, "module-pypath.utils.orthology"], [1106, "module-pypath.utils.pdb"], [1111, "module-pypath.utils.proteomicsdb"], [1113, "module-pypath.utils.pyreact"], [1128, "module-pypath.utils.reflists"], [1136, "module-pypath.utils.residues"], [1138, "module-pypath.utils.seq"], [1145, "module-pypath.utils.taxonomy"], [1160, "module-pypath.utils.unichem"], [1162, "module-pypath.utils.uniprot"], [1222, "module-pypath.visual"], [1223, "module-pypath.visual.drawing"], [1226, "module-pypath.visual.igraph_drawing"], [1232, "module-pypath.visual.igraph_drawing.edge"], [1239, "module-pypath.visual.igraph_drawing.vertex"]], "pypath": [[0, "module-pypath"]], "pypath.core": [[1, "module-pypath.core"]], "pypath.core.annot": [[2, "module-pypath.core.annot"]], "adhesome (class in pypath.core.annot)": [[3, "pypath.core.annot.Adhesome"]], "__init__() (pypath.core.annot.adhesome method)": [[3, "pypath.core.annot.Adhesome.__init__"]], "add_complexes_by_inference() (pypath.core.annot.adhesome method)": [[3, "pypath.core.annot.Adhesome.add_complexes_by_inference"]], "all_complexes() (pypath.core.annot.adhesome method)": [[3, "pypath.core.annot.Adhesome.all_complexes"]], "all_entities() (pypath.core.annot.adhesome method)": [[3, "pypath.core.annot.Adhesome.all_entities"]], "all_mirnas() (pypath.core.annot.adhesome method)": [[3, "pypath.core.annot.Adhesome.all_mirnas"]], "all_proteins() (pypath.core.annot.adhesome method)": [[3, "pypath.core.annot.Adhesome.all_proteins"]], "all_refs() (pypath.core.annot.adhesome method)": [[3, "pypath.core.annot.Adhesome.all_refs"]], "annotate_complex() (pypath.core.annot.adhesome method)": [[3, "pypath.core.annot.Adhesome.annotate_complex"]], "browse() (pypath.core.annot.adhesome method)": [[3, "pypath.core.annot.Adhesome.browse"]], "complex_inference() (pypath.core.annot.adhesome method)": [[3, "pypath.core.annot.Adhesome.complex_inference"]], "coverage() (pypath.core.annot.adhesome method)": [[3, "pypath.core.annot.Adhesome.coverage"]], "curation_effort() (pypath.core.annot.adhesome method)": [[3, "pypath.core.annot.Adhesome.curation_effort"]], "get_names() (pypath.core.annot.adhesome method)": [[3, "pypath.core.annot.Adhesome.get_names"]], "get_reference_set() (pypath.core.annot.adhesome static method)": [[3, "pypath.core.annot.Adhesome.get_reference_set"]], "get_subset() (pypath.core.annot.adhesome method)": [[3, "pypath.core.annot.Adhesome.get_subset"]], "get_subset_bool_array() (pypath.core.annot.adhesome method)": [[3, "pypath.core.annot.Adhesome.get_subset_bool_array"]], "get_values() (pypath.core.annot.adhesome method)": [[3, "pypath.core.annot.Adhesome.get_values"]], "labels() (pypath.core.annot.adhesome method)": [[3, "pypath.core.annot.Adhesome.labels"]], "load() (pypath.core.annot.adhesome method)": [[3, "pypath.core.annot.Adhesome.load"]], "load_data() (pypath.core.annot.adhesome method)": [[3, "pypath.core.annot.Adhesome.load_data"]], "load_proteins() (pypath.core.annot.adhesome method)": [[3, "pypath.core.annot.Adhesome.load_proteins"]], "make_df() (pypath.core.annot.adhesome method)": [[3, "pypath.core.annot.Adhesome.make_df"]], "numof_entities() (pypath.core.annot.adhesome method)": [[3, "pypath.core.annot.Adhesome.numof_entities"]], "numof_records() (pypath.core.annot.adhesome method)": [[3, "pypath.core.annot.Adhesome.numof_records"]], "numof_references() (pypath.core.annot.adhesome method)": [[3, "pypath.core.annot.Adhesome.numof_references"]], "process() (pypath.core.annot.adhesome method)": [[3, "pypath.core.annot.Adhesome.process"]], "reload() (pypath.core.annot.adhesome method)": [[3, "pypath.core.annot.Adhesome.reload"]], "select() (pypath.core.annot.adhesome method)": [[3, "pypath.core.annot.Adhesome.select"]], "set_method() (pypath.core.annot.adhesome method)": [[3, "pypath.core.annot.Adhesome.set_method"]], "set_reference_set() (pypath.core.annot.adhesome method)": [[3, "pypath.core.annot.Adhesome.set_reference_set"]], "show() (pypath.core.annot.adhesome method)": [[3, "pypath.core.annot.Adhesome.show"]], "subset_intersection() (pypath.core.annot.adhesome method)": [[3, "pypath.core.annot.Adhesome.subset_intersection"]], "to_array() (pypath.core.annot.adhesome method)": [[3, "pypath.core.annot.Adhesome.to_array"]], "to_bool_array() (pypath.core.annot.adhesome method)": [[3, "pypath.core.annot.Adhesome.to_bool_array"]], "to_set() (pypath.core.annot.adhesome method)": [[3, "pypath.core.annot.Adhesome.to_set"]], "almen2009 (class in pypath.core.annot)": [[4, "pypath.core.annot.Almen2009"]], "__init__() (pypath.core.annot.almen2009 method)": [[4, "pypath.core.annot.Almen2009.__init__"]], "add_complexes_by_inference() (pypath.core.annot.almen2009 method)": [[4, "pypath.core.annot.Almen2009.add_complexes_by_inference"]], "all_complexes() (pypath.core.annot.almen2009 method)": [[4, "pypath.core.annot.Almen2009.all_complexes"]], "all_entities() (pypath.core.annot.almen2009 method)": [[4, "pypath.core.annot.Almen2009.all_entities"]], "all_mirnas() (pypath.core.annot.almen2009 method)": [[4, "pypath.core.annot.Almen2009.all_mirnas"]], "all_proteins() (pypath.core.annot.almen2009 method)": [[4, "pypath.core.annot.Almen2009.all_proteins"]], "all_refs() (pypath.core.annot.almen2009 method)": [[4, "pypath.core.annot.Almen2009.all_refs"]], "annotate_complex() (pypath.core.annot.almen2009 method)": [[4, "pypath.core.annot.Almen2009.annotate_complex"]], "browse() (pypath.core.annot.almen2009 method)": [[4, "pypath.core.annot.Almen2009.browse"]], "complex_inference() (pypath.core.annot.almen2009 method)": [[4, "pypath.core.annot.Almen2009.complex_inference"]], "coverage() (pypath.core.annot.almen2009 method)": [[4, "pypath.core.annot.Almen2009.coverage"]], "curation_effort() (pypath.core.annot.almen2009 method)": [[4, "pypath.core.annot.Almen2009.curation_effort"]], "get_names() (pypath.core.annot.almen2009 method)": [[4, "pypath.core.annot.Almen2009.get_names"]], "get_reference_set() (pypath.core.annot.almen2009 static method)": [[4, "pypath.core.annot.Almen2009.get_reference_set"]], "get_subset() (pypath.core.annot.almen2009 method)": [[4, "pypath.core.annot.Almen2009.get_subset"]], "get_subset_bool_array() (pypath.core.annot.almen2009 method)": [[4, "pypath.core.annot.Almen2009.get_subset_bool_array"]], "get_values() (pypath.core.annot.almen2009 method)": [[4, "pypath.core.annot.Almen2009.get_values"]], "labels() (pypath.core.annot.almen2009 method)": [[4, "pypath.core.annot.Almen2009.labels"]], "load() (pypath.core.annot.almen2009 method)": [[4, "pypath.core.annot.Almen2009.load"]], "load_data() (pypath.core.annot.almen2009 method)": [[4, "pypath.core.annot.Almen2009.load_data"]], "load_proteins() (pypath.core.annot.almen2009 method)": [[4, "pypath.core.annot.Almen2009.load_proteins"]], "make_df() (pypath.core.annot.almen2009 method)": [[4, "pypath.core.annot.Almen2009.make_df"]], "numof_entities() (pypath.core.annot.almen2009 method)": [[4, "pypath.core.annot.Almen2009.numof_entities"]], "numof_records() (pypath.core.annot.almen2009 method)": [[4, "pypath.core.annot.Almen2009.numof_records"]], "numof_references() (pypath.core.annot.almen2009 method)": [[4, "pypath.core.annot.Almen2009.numof_references"]], "process() (pypath.core.annot.almen2009 method)": [[4, "pypath.core.annot.Almen2009.process"]], "reload() (pypath.core.annot.almen2009 method)": [[4, "pypath.core.annot.Almen2009.reload"]], "select() (pypath.core.annot.almen2009 method)": [[4, "pypath.core.annot.Almen2009.select"]], "set_method() (pypath.core.annot.almen2009 method)": [[4, "pypath.core.annot.Almen2009.set_method"]], "set_reference_set() (pypath.core.annot.almen2009 method)": [[4, "pypath.core.annot.Almen2009.set_reference_set"]], "show() (pypath.core.annot.almen2009 method)": [[4, "pypath.core.annot.Almen2009.show"]], "subset_intersection() (pypath.core.annot.almen2009 method)": [[4, "pypath.core.annot.Almen2009.subset_intersection"]], "to_array() (pypath.core.annot.almen2009 method)": [[4, "pypath.core.annot.Almen2009.to_array"]], "to_bool_array() (pypath.core.annot.almen2009 method)": [[4, "pypath.core.annot.Almen2009.to_bool_array"]], "to_set() (pypath.core.annot.almen2009 method)": [[4, "pypath.core.annot.Almen2009.to_set"]], "annotationbase (class in pypath.core.annot)": [[5, "pypath.core.annot.AnnotationBase"]], "__init__() (pypath.core.annot.annotationbase method)": [[5, "pypath.core.annot.AnnotationBase.__init__"]], "add_complexes_by_inference() (pypath.core.annot.annotationbase method)": [[5, "pypath.core.annot.AnnotationBase.add_complexes_by_inference"]], "all_complexes() (pypath.core.annot.annotationbase method)": [[5, "pypath.core.annot.AnnotationBase.all_complexes"]], "all_entities() (pypath.core.annot.annotationbase method)": [[5, "pypath.core.annot.AnnotationBase.all_entities"]], "all_mirnas() (pypath.core.annot.annotationbase method)": [[5, "pypath.core.annot.AnnotationBase.all_mirnas"]], "all_proteins() (pypath.core.annot.annotationbase method)": [[5, "pypath.core.annot.AnnotationBase.all_proteins"]], "all_refs() (pypath.core.annot.annotationbase method)": [[5, "pypath.core.annot.AnnotationBase.all_refs"]], "annotate_complex() (pypath.core.annot.annotationbase method)": [[5, "pypath.core.annot.AnnotationBase.annotate_complex"]], "browse() (pypath.core.annot.annotationbase method)": [[5, "pypath.core.annot.AnnotationBase.browse"]], "complex_inference() (pypath.core.annot.annotationbase method)": [[5, "pypath.core.annot.AnnotationBase.complex_inference"]], "coverage() (pypath.core.annot.annotationbase method)": [[5, "pypath.core.annot.AnnotationBase.coverage"]], "curation_effort() (pypath.core.annot.annotationbase method)": [[5, "pypath.core.annot.AnnotationBase.curation_effort"]], "get_names() (pypath.core.annot.annotationbase method)": [[5, "pypath.core.annot.AnnotationBase.get_names"]], "get_reference_set() (pypath.core.annot.annotationbase static method)": [[5, "pypath.core.annot.AnnotationBase.get_reference_set"]], "get_subset() (pypath.core.annot.annotationbase method)": [[5, "pypath.core.annot.AnnotationBase.get_subset"]], "get_subset_bool_array() (pypath.core.annot.annotationbase method)": [[5, "pypath.core.annot.AnnotationBase.get_subset_bool_array"]], "get_values() (pypath.core.annot.annotationbase method)": [[5, "pypath.core.annot.AnnotationBase.get_values"]], "labels() (pypath.core.annot.annotationbase method)": [[5, "pypath.core.annot.AnnotationBase.labels"]], "load() (pypath.core.annot.annotationbase method)": [[5, "pypath.core.annot.AnnotationBase.load"]], "load_data() (pypath.core.annot.annotationbase method)": [[5, "pypath.core.annot.AnnotationBase.load_data"]], "load_proteins() (pypath.core.annot.annotationbase method)": [[5, "pypath.core.annot.AnnotationBase.load_proteins"]], "make_df() (pypath.core.annot.annotationbase method)": [[5, "pypath.core.annot.AnnotationBase.make_df"]], "numof_entities() (pypath.core.annot.annotationbase method)": [[5, "pypath.core.annot.AnnotationBase.numof_entities"]], "numof_records() (pypath.core.annot.annotationbase method)": [[5, "pypath.core.annot.AnnotationBase.numof_records"]], "numof_references() (pypath.core.annot.annotationbase method)": [[5, "pypath.core.annot.AnnotationBase.numof_references"]], "process() (pypath.core.annot.annotationbase method)": [[5, "pypath.core.annot.AnnotationBase.process"]], "reload() (pypath.core.annot.annotationbase method)": [[5, "pypath.core.annot.AnnotationBase.reload"]], "select() (pypath.core.annot.annotationbase method)": [[5, "pypath.core.annot.AnnotationBase.select"]], "set_method() (pypath.core.annot.annotationbase method)": [[5, "pypath.core.annot.AnnotationBase.set_method"]], "set_reference_set() (pypath.core.annot.annotationbase method)": [[5, "pypath.core.annot.AnnotationBase.set_reference_set"]], "show() (pypath.core.annot.annotationbase method)": [[5, "pypath.core.annot.AnnotationBase.show"]], "subset_intersection() (pypath.core.annot.annotationbase method)": [[5, "pypath.core.annot.AnnotationBase.subset_intersection"]], "to_array() (pypath.core.annot.annotationbase method)": [[5, "pypath.core.annot.AnnotationBase.to_array"]], "to_bool_array() (pypath.core.annot.annotationbase method)": [[5, "pypath.core.annot.AnnotationBase.to_bool_array"]], "to_set() (pypath.core.annot.annotationbase method)": [[5, "pypath.core.annot.AnnotationBase.to_set"]], "annotationtable (class in pypath.core.annot)": [[6, "pypath.core.annot.AnnotationTable"]], "__init__() (pypath.core.annot.annotationtable method)": [[6, "pypath.core.annot.AnnotationTable.__init__"]], "all_annotations() (pypath.core.annot.annotationtable method)": [[6, "pypath.core.annot.AnnotationTable.all_annotations"]], "all_annotations_str() (pypath.core.annot.annotationtable method)": [[6, "pypath.core.annot.AnnotationTable.all_annotations_str"]], "reload() (pypath.core.annot.annotationtable method)": [[6, "pypath.core.annot.AnnotationTable.reload"]], "search() (pypath.core.annot.annotationtable method)": [[6, "pypath.core.annot.AnnotationTable.search"]], "baccin2019 (class in pypath.core.annot)": [[7, "pypath.core.annot.Baccin2019"]], "__init__() (pypath.core.annot.baccin2019 method)": [[7, "pypath.core.annot.Baccin2019.__init__"]], "add_complexes_by_inference() (pypath.core.annot.baccin2019 method)": [[7, "pypath.core.annot.Baccin2019.add_complexes_by_inference"]], "all_complexes() (pypath.core.annot.baccin2019 method)": [[7, "pypath.core.annot.Baccin2019.all_complexes"]], "all_entities() (pypath.core.annot.baccin2019 method)": [[7, "pypath.core.annot.Baccin2019.all_entities"]], "all_mirnas() (pypath.core.annot.baccin2019 method)": [[7, "pypath.core.annot.Baccin2019.all_mirnas"]], "all_proteins() (pypath.core.annot.baccin2019 method)": [[7, "pypath.core.annot.Baccin2019.all_proteins"]], "all_refs() (pypath.core.annot.baccin2019 method)": [[7, "pypath.core.annot.Baccin2019.all_refs"]], "annotate_complex() (pypath.core.annot.baccin2019 method)": [[7, "pypath.core.annot.Baccin2019.annotate_complex"]], "browse() (pypath.core.annot.baccin2019 method)": [[7, "pypath.core.annot.Baccin2019.browse"]], "complex_inference() (pypath.core.annot.baccin2019 method)": [[7, "pypath.core.annot.Baccin2019.complex_inference"]], "coverage() (pypath.core.annot.baccin2019 method)": [[7, "pypath.core.annot.Baccin2019.coverage"]], "curation_effort() (pypath.core.annot.baccin2019 method)": [[7, "pypath.core.annot.Baccin2019.curation_effort"]], "get_names() (pypath.core.annot.baccin2019 method)": [[7, "pypath.core.annot.Baccin2019.get_names"]], "get_reference_set() (pypath.core.annot.baccin2019 static method)": [[7, "pypath.core.annot.Baccin2019.get_reference_set"]], "get_subset() (pypath.core.annot.baccin2019 method)": [[7, "pypath.core.annot.Baccin2019.get_subset"]], "get_subset_bool_array() (pypath.core.annot.baccin2019 method)": [[7, "pypath.core.annot.Baccin2019.get_subset_bool_array"]], "get_values() (pypath.core.annot.baccin2019 method)": [[7, "pypath.core.annot.Baccin2019.get_values"]], "labels() (pypath.core.annot.baccin2019 method)": [[7, "pypath.core.annot.Baccin2019.labels"]], "load() (pypath.core.annot.baccin2019 method)": [[7, "pypath.core.annot.Baccin2019.load"]], "load_data() (pypath.core.annot.baccin2019 method)": [[7, "pypath.core.annot.Baccin2019.load_data"]], "load_proteins() (pypath.core.annot.baccin2019 method)": [[7, "pypath.core.annot.Baccin2019.load_proteins"]], "make_df() (pypath.core.annot.baccin2019 method)": [[7, "pypath.core.annot.Baccin2019.make_df"]], "numof_entities() (pypath.core.annot.baccin2019 method)": [[7, "pypath.core.annot.Baccin2019.numof_entities"]], "numof_records() (pypath.core.annot.baccin2019 method)": [[7, "pypath.core.annot.Baccin2019.numof_records"]], "numof_references() (pypath.core.annot.baccin2019 method)": [[7, "pypath.core.annot.Baccin2019.numof_references"]], "process() (pypath.core.annot.baccin2019 method)": [[7, "pypath.core.annot.Baccin2019.process"]], "reload() (pypath.core.annot.baccin2019 method)": [[7, "pypath.core.annot.Baccin2019.reload"]], "select() (pypath.core.annot.baccin2019 method)": [[7, "pypath.core.annot.Baccin2019.select"]], "set_method() (pypath.core.annot.baccin2019 method)": [[7, "pypath.core.annot.Baccin2019.set_method"]], "set_reference_set() (pypath.core.annot.baccin2019 method)": [[7, "pypath.core.annot.Baccin2019.set_reference_set"]], "show() (pypath.core.annot.baccin2019 method)": [[7, "pypath.core.annot.Baccin2019.show"]], "subset_intersection() (pypath.core.annot.baccin2019 method)": [[7, "pypath.core.annot.Baccin2019.subset_intersection"]], "to_array() (pypath.core.annot.baccin2019 method)": [[7, "pypath.core.annot.Baccin2019.to_array"]], "to_bool_array() (pypath.core.annot.baccin2019 method)": [[7, "pypath.core.annot.Baccin2019.to_bool_array"]], "to_set() (pypath.core.annot.baccin2019 method)": [[7, "pypath.core.annot.Baccin2019.to_set"]], "biogps (class in pypath.core.annot)": [[8, "pypath.core.annot.Biogps"]], "__init__() (pypath.core.annot.biogps method)": [[8, "pypath.core.annot.Biogps.__init__"]], "add_complexes_by_inference() (pypath.core.annot.biogps method)": [[8, "pypath.core.annot.Biogps.add_complexes_by_inference"]], "all_complexes() (pypath.core.annot.biogps method)": [[8, "pypath.core.annot.Biogps.all_complexes"]], "all_entities() (pypath.core.annot.biogps method)": [[8, "pypath.core.annot.Biogps.all_entities"]], "all_mirnas() (pypath.core.annot.biogps method)": [[8, "pypath.core.annot.Biogps.all_mirnas"]], "all_proteins() (pypath.core.annot.biogps method)": [[8, "pypath.core.annot.Biogps.all_proteins"]], "all_refs() (pypath.core.annot.biogps method)": [[8, "pypath.core.annot.Biogps.all_refs"]], "annotate_complex() (pypath.core.annot.biogps method)": [[8, "pypath.core.annot.Biogps.annotate_complex"]], "browse() (pypath.core.annot.biogps method)": [[8, "pypath.core.annot.Biogps.browse"]], "complex_inference() (pypath.core.annot.biogps method)": [[8, "pypath.core.annot.Biogps.complex_inference"]], "coverage() (pypath.core.annot.biogps method)": [[8, "pypath.core.annot.Biogps.coverage"]], "curation_effort() (pypath.core.annot.biogps method)": [[8, "pypath.core.annot.Biogps.curation_effort"]], "get_names() (pypath.core.annot.biogps method)": [[8, "pypath.core.annot.Biogps.get_names"]], "get_reference_set() (pypath.core.annot.biogps static method)": [[8, "pypath.core.annot.Biogps.get_reference_set"]], "get_subset() (pypath.core.annot.biogps method)": [[8, "pypath.core.annot.Biogps.get_subset"]], "get_subset_bool_array() (pypath.core.annot.biogps method)": [[8, "pypath.core.annot.Biogps.get_subset_bool_array"]], "get_values() (pypath.core.annot.biogps method)": [[8, "pypath.core.annot.Biogps.get_values"]], "labels() (pypath.core.annot.biogps method)": [[8, "pypath.core.annot.Biogps.labels"]], "load() (pypath.core.annot.biogps method)": [[8, "pypath.core.annot.Biogps.load"]], "load_data() (pypath.core.annot.biogps method)": [[8, "pypath.core.annot.Biogps.load_data"]], "load_proteins() (pypath.core.annot.biogps method)": [[8, "pypath.core.annot.Biogps.load_proteins"]], "make_df() (pypath.core.annot.biogps method)": [[8, "pypath.core.annot.Biogps.make_df"]], "numof_entities() (pypath.core.annot.biogps method)": [[8, "pypath.core.annot.Biogps.numof_entities"]], "numof_records() (pypath.core.annot.biogps method)": [[8, "pypath.core.annot.Biogps.numof_records"]], "numof_references() (pypath.core.annot.biogps method)": [[8, "pypath.core.annot.Biogps.numof_references"]], "process() (pypath.core.annot.biogps method)": [[8, "pypath.core.annot.Biogps.process"]], "reload() (pypath.core.annot.biogps method)": [[8, "pypath.core.annot.Biogps.reload"]], "select() (pypath.core.annot.biogps method)": [[8, "pypath.core.annot.Biogps.select"]], "set_method() (pypath.core.annot.biogps method)": [[8, "pypath.core.annot.Biogps.set_method"]], "set_reference_set() (pypath.core.annot.biogps method)": [[8, "pypath.core.annot.Biogps.set_reference_set"]], "show() (pypath.core.annot.biogps method)": [[8, "pypath.core.annot.Biogps.show"]], "subset_intersection() (pypath.core.annot.biogps method)": [[8, "pypath.core.annot.Biogps.subset_intersection"]], "to_array() (pypath.core.annot.biogps method)": [[8, "pypath.core.annot.Biogps.to_array"]], "to_bool_array() (pypath.core.annot.biogps method)": [[8, "pypath.core.annot.Biogps.to_bool_array"]], "to_set() (pypath.core.annot.biogps method)": [[8, "pypath.core.annot.Biogps.to_set"]], "cancergenecensus (class in pypath.core.annot)": [[9, "pypath.core.annot.CancerGeneCensus"]], "__init__() (pypath.core.annot.cancergenecensus method)": [[9, "pypath.core.annot.CancerGeneCensus.__init__"]], "add_complexes_by_inference() (pypath.core.annot.cancergenecensus method)": [[9, "pypath.core.annot.CancerGeneCensus.add_complexes_by_inference"]], "all_complexes() (pypath.core.annot.cancergenecensus method)": [[9, "pypath.core.annot.CancerGeneCensus.all_complexes"]], "all_entities() (pypath.core.annot.cancergenecensus method)": [[9, "pypath.core.annot.CancerGeneCensus.all_entities"]], "all_mirnas() (pypath.core.annot.cancergenecensus method)": [[9, "pypath.core.annot.CancerGeneCensus.all_mirnas"]], "all_proteins() (pypath.core.annot.cancergenecensus method)": [[9, "pypath.core.annot.CancerGeneCensus.all_proteins"]], "all_refs() (pypath.core.annot.cancergenecensus method)": [[9, "pypath.core.annot.CancerGeneCensus.all_refs"]], "annotate_complex() (pypath.core.annot.cancergenecensus method)": [[9, "pypath.core.annot.CancerGeneCensus.annotate_complex"]], "browse() (pypath.core.annot.cancergenecensus method)": [[9, "pypath.core.annot.CancerGeneCensus.browse"]], "complex_inference() (pypath.core.annot.cancergenecensus method)": [[9, "pypath.core.annot.CancerGeneCensus.complex_inference"]], "coverage() (pypath.core.annot.cancergenecensus method)": [[9, "pypath.core.annot.CancerGeneCensus.coverage"]], "curation_effort() (pypath.core.annot.cancergenecensus method)": [[9, "pypath.core.annot.CancerGeneCensus.curation_effort"]], "get_names() (pypath.core.annot.cancergenecensus method)": [[9, "pypath.core.annot.CancerGeneCensus.get_names"]], "get_reference_set() (pypath.core.annot.cancergenecensus static method)": [[9, "pypath.core.annot.CancerGeneCensus.get_reference_set"]], "get_subset() (pypath.core.annot.cancergenecensus method)": [[9, "pypath.core.annot.CancerGeneCensus.get_subset"]], "get_subset_bool_array() (pypath.core.annot.cancergenecensus method)": [[9, "pypath.core.annot.CancerGeneCensus.get_subset_bool_array"]], "get_values() (pypath.core.annot.cancergenecensus method)": [[9, "pypath.core.annot.CancerGeneCensus.get_values"]], "labels() (pypath.core.annot.cancergenecensus method)": [[9, "pypath.core.annot.CancerGeneCensus.labels"]], "load() (pypath.core.annot.cancergenecensus method)": [[9, "pypath.core.annot.CancerGeneCensus.load"]], "load_data() (pypath.core.annot.cancergenecensus method)": [[9, "pypath.core.annot.CancerGeneCensus.load_data"]], "load_proteins() (pypath.core.annot.cancergenecensus method)": [[9, "pypath.core.annot.CancerGeneCensus.load_proteins"]], "make_df() (pypath.core.annot.cancergenecensus method)": [[9, "pypath.core.annot.CancerGeneCensus.make_df"]], "numof_entities() (pypath.core.annot.cancergenecensus method)": [[9, "pypath.core.annot.CancerGeneCensus.numof_entities"]], "numof_records() (pypath.core.annot.cancergenecensus method)": [[9, "pypath.core.annot.CancerGeneCensus.numof_records"]], "numof_references() (pypath.core.annot.cancergenecensus method)": [[9, "pypath.core.annot.CancerGeneCensus.numof_references"]], "process() (pypath.core.annot.cancergenecensus method)": [[9, "pypath.core.annot.CancerGeneCensus.process"]], "reload() (pypath.core.annot.cancergenecensus method)": [[9, "pypath.core.annot.CancerGeneCensus.reload"]], "select() (pypath.core.annot.cancergenecensus method)": [[9, "pypath.core.annot.CancerGeneCensus.select"]], "set_method() (pypath.core.annot.cancergenecensus method)": [[9, "pypath.core.annot.CancerGeneCensus.set_method"]], "set_reference_set() (pypath.core.annot.cancergenecensus method)": [[9, "pypath.core.annot.CancerGeneCensus.set_reference_set"]], "show() (pypath.core.annot.cancergenecensus method)": [[9, "pypath.core.annot.CancerGeneCensus.show"]], "subset_intersection() (pypath.core.annot.cancergenecensus method)": [[9, "pypath.core.annot.CancerGeneCensus.subset_intersection"]], "to_array() (pypath.core.annot.cancergenecensus method)": [[9, "pypath.core.annot.CancerGeneCensus.to_array"]], "to_bool_array() (pypath.core.annot.cancergenecensus method)": [[9, "pypath.core.annot.CancerGeneCensus.to_bool_array"]], "to_set() (pypath.core.annot.cancergenecensus method)": [[9, "pypath.core.annot.CancerGeneCensus.to_set"]], "cancerdrugsdb (class in pypath.core.annot)": [[10, "pypath.core.annot.Cancerdrugsdb"]], "__init__() (pypath.core.annot.cancerdrugsdb method)": [[10, "pypath.core.annot.Cancerdrugsdb.__init__"]], "add_complexes_by_inference() (pypath.core.annot.cancerdrugsdb method)": [[10, "pypath.core.annot.Cancerdrugsdb.add_complexes_by_inference"]], "all_complexes() (pypath.core.annot.cancerdrugsdb method)": [[10, "pypath.core.annot.Cancerdrugsdb.all_complexes"]], "all_entities() (pypath.core.annot.cancerdrugsdb method)": [[10, "pypath.core.annot.Cancerdrugsdb.all_entities"]], "all_mirnas() (pypath.core.annot.cancerdrugsdb method)": [[10, "pypath.core.annot.Cancerdrugsdb.all_mirnas"]], "all_proteins() (pypath.core.annot.cancerdrugsdb method)": [[10, "pypath.core.annot.Cancerdrugsdb.all_proteins"]], "all_refs() (pypath.core.annot.cancerdrugsdb method)": [[10, "pypath.core.annot.Cancerdrugsdb.all_refs"]], "annotate_complex() (pypath.core.annot.cancerdrugsdb method)": [[10, "pypath.core.annot.Cancerdrugsdb.annotate_complex"]], "browse() (pypath.core.annot.cancerdrugsdb method)": [[10, "pypath.core.annot.Cancerdrugsdb.browse"]], "complex_inference() (pypath.core.annot.cancerdrugsdb method)": [[10, "pypath.core.annot.Cancerdrugsdb.complex_inference"]], "coverage() (pypath.core.annot.cancerdrugsdb method)": [[10, "pypath.core.annot.Cancerdrugsdb.coverage"]], "curation_effort() (pypath.core.annot.cancerdrugsdb method)": [[10, "pypath.core.annot.Cancerdrugsdb.curation_effort"]], "get_names() (pypath.core.annot.cancerdrugsdb method)": [[10, "pypath.core.annot.Cancerdrugsdb.get_names"]], "get_reference_set() (pypath.core.annot.cancerdrugsdb static method)": [[10, "pypath.core.annot.Cancerdrugsdb.get_reference_set"]], "get_subset() (pypath.core.annot.cancerdrugsdb method)": [[10, "pypath.core.annot.Cancerdrugsdb.get_subset"]], "get_subset_bool_array() (pypath.core.annot.cancerdrugsdb method)": [[10, "pypath.core.annot.Cancerdrugsdb.get_subset_bool_array"]], "get_values() (pypath.core.annot.cancerdrugsdb method)": [[10, "pypath.core.annot.Cancerdrugsdb.get_values"]], "labels() (pypath.core.annot.cancerdrugsdb method)": [[10, "pypath.core.annot.Cancerdrugsdb.labels"]], "load() (pypath.core.annot.cancerdrugsdb method)": [[10, "pypath.core.annot.Cancerdrugsdb.load"]], "load_data() (pypath.core.annot.cancerdrugsdb method)": [[10, "pypath.core.annot.Cancerdrugsdb.load_data"]], "load_proteins() (pypath.core.annot.cancerdrugsdb method)": [[10, "pypath.core.annot.Cancerdrugsdb.load_proteins"]], "make_df() (pypath.core.annot.cancerdrugsdb method)": [[10, "pypath.core.annot.Cancerdrugsdb.make_df"]], "numof_entities() (pypath.core.annot.cancerdrugsdb method)": [[10, "pypath.core.annot.Cancerdrugsdb.numof_entities"]], "numof_records() (pypath.core.annot.cancerdrugsdb method)": [[10, "pypath.core.annot.Cancerdrugsdb.numof_records"]], "numof_references() (pypath.core.annot.cancerdrugsdb method)": [[10, "pypath.core.annot.Cancerdrugsdb.numof_references"]], "process() (pypath.core.annot.cancerdrugsdb method)": [[10, "pypath.core.annot.Cancerdrugsdb.process"]], "reload() (pypath.core.annot.cancerdrugsdb method)": [[10, "pypath.core.annot.Cancerdrugsdb.reload"]], "select() (pypath.core.annot.cancerdrugsdb method)": [[10, "pypath.core.annot.Cancerdrugsdb.select"]], "set_method() (pypath.core.annot.cancerdrugsdb method)": [[10, "pypath.core.annot.Cancerdrugsdb.set_method"]], "set_reference_set() (pypath.core.annot.cancerdrugsdb method)": [[10, "pypath.core.annot.Cancerdrugsdb.set_reference_set"]], "show() (pypath.core.annot.cancerdrugsdb method)": [[10, "pypath.core.annot.Cancerdrugsdb.show"]], "subset_intersection() (pypath.core.annot.cancerdrugsdb method)": [[10, "pypath.core.annot.Cancerdrugsdb.subset_intersection"]], "to_array() (pypath.core.annot.cancerdrugsdb method)": [[10, "pypath.core.annot.Cancerdrugsdb.to_array"]], "to_bool_array() (pypath.core.annot.cancerdrugsdb method)": [[10, "pypath.core.annot.Cancerdrugsdb.to_bool_array"]], "to_set() (pypath.core.annot.cancerdrugsdb method)": [[10, "pypath.core.annot.Cancerdrugsdb.to_set"]], "cancersea (class in pypath.core.annot)": [[11, "pypath.core.annot.Cancersea"]], "__init__() (pypath.core.annot.cancersea method)": [[11, "pypath.core.annot.Cancersea.__init__"]], "add_complexes_by_inference() (pypath.core.annot.cancersea method)": [[11, "pypath.core.annot.Cancersea.add_complexes_by_inference"]], "all_complexes() (pypath.core.annot.cancersea method)": [[11, "pypath.core.annot.Cancersea.all_complexes"]], "all_entities() (pypath.core.annot.cancersea method)": [[11, "pypath.core.annot.Cancersea.all_entities"]], "all_mirnas() (pypath.core.annot.cancersea method)": [[11, "pypath.core.annot.Cancersea.all_mirnas"]], "all_proteins() (pypath.core.annot.cancersea method)": [[11, "pypath.core.annot.Cancersea.all_proteins"]], "all_refs() (pypath.core.annot.cancersea method)": [[11, "pypath.core.annot.Cancersea.all_refs"]], "annotate_complex() (pypath.core.annot.cancersea method)": [[11, "pypath.core.annot.Cancersea.annotate_complex"]], "browse() (pypath.core.annot.cancersea method)": [[11, "pypath.core.annot.Cancersea.browse"]], "complex_inference() (pypath.core.annot.cancersea method)": [[11, "pypath.core.annot.Cancersea.complex_inference"]], "coverage() (pypath.core.annot.cancersea method)": [[11, "pypath.core.annot.Cancersea.coverage"]], "curation_effort() (pypath.core.annot.cancersea method)": [[11, "pypath.core.annot.Cancersea.curation_effort"]], "get_names() (pypath.core.annot.cancersea method)": [[11, "pypath.core.annot.Cancersea.get_names"]], "get_reference_set() (pypath.core.annot.cancersea static method)": [[11, "pypath.core.annot.Cancersea.get_reference_set"]], "get_subset() (pypath.core.annot.cancersea method)": [[11, "pypath.core.annot.Cancersea.get_subset"]], "get_subset_bool_array() (pypath.core.annot.cancersea method)": [[11, "pypath.core.annot.Cancersea.get_subset_bool_array"]], "get_values() (pypath.core.annot.cancersea method)": [[11, "pypath.core.annot.Cancersea.get_values"]], "labels() (pypath.core.annot.cancersea method)": [[11, "pypath.core.annot.Cancersea.labels"]], "load() (pypath.core.annot.cancersea method)": [[11, "pypath.core.annot.Cancersea.load"]], "load_data() (pypath.core.annot.cancersea method)": [[11, "pypath.core.annot.Cancersea.load_data"]], "load_proteins() (pypath.core.annot.cancersea method)": [[11, "pypath.core.annot.Cancersea.load_proteins"]], "make_df() (pypath.core.annot.cancersea method)": [[11, "pypath.core.annot.Cancersea.make_df"]], "numof_entities() (pypath.core.annot.cancersea method)": [[11, "pypath.core.annot.Cancersea.numof_entities"]], "numof_records() (pypath.core.annot.cancersea method)": [[11, "pypath.core.annot.Cancersea.numof_records"]], "numof_references() (pypath.core.annot.cancersea method)": [[11, "pypath.core.annot.Cancersea.numof_references"]], "process() (pypath.core.annot.cancersea method)": [[11, "pypath.core.annot.Cancersea.process"]], "reload() (pypath.core.annot.cancersea method)": [[11, "pypath.core.annot.Cancersea.reload"]], "select() (pypath.core.annot.cancersea method)": [[11, "pypath.core.annot.Cancersea.select"]], "set_method() (pypath.core.annot.cancersea method)": [[11, "pypath.core.annot.Cancersea.set_method"]], "set_reference_set() (pypath.core.annot.cancersea method)": [[11, "pypath.core.annot.Cancersea.set_reference_set"]], "show() (pypath.core.annot.cancersea method)": [[11, "pypath.core.annot.Cancersea.show"]], "subset_intersection() (pypath.core.annot.cancersea method)": [[11, "pypath.core.annot.Cancersea.subset_intersection"]], "to_array() (pypath.core.annot.cancersea method)": [[11, "pypath.core.annot.Cancersea.to_array"]], "to_bool_array() (pypath.core.annot.cancersea method)": [[11, "pypath.core.annot.Cancersea.to_bool_array"]], "to_set() (pypath.core.annot.cancersea method)": [[11, "pypath.core.annot.Cancersea.to_set"]], "cellphonedb (class in pypath.core.annot)": [[12, "pypath.core.annot.CellPhoneDB"]], "__init__() (pypath.core.annot.cellphonedb method)": [[12, "pypath.core.annot.CellPhoneDB.__init__"]], "add_complexes_by_inference() (pypath.core.annot.cellphonedb method)": [[12, "pypath.core.annot.CellPhoneDB.add_complexes_by_inference"]], "all_complexes() (pypath.core.annot.cellphonedb method)": [[12, "pypath.core.annot.CellPhoneDB.all_complexes"]], "all_entities() (pypath.core.annot.cellphonedb method)": [[12, "pypath.core.annot.CellPhoneDB.all_entities"]], "all_mirnas() (pypath.core.annot.cellphonedb method)": [[12, "pypath.core.annot.CellPhoneDB.all_mirnas"]], "all_proteins() (pypath.core.annot.cellphonedb method)": [[12, "pypath.core.annot.CellPhoneDB.all_proteins"]], "all_refs() (pypath.core.annot.cellphonedb method)": [[12, "pypath.core.annot.CellPhoneDB.all_refs"]], "annotate_complex() (pypath.core.annot.cellphonedb method)": [[12, "pypath.core.annot.CellPhoneDB.annotate_complex"]], "browse() (pypath.core.annot.cellphonedb method)": [[12, "pypath.core.annot.CellPhoneDB.browse"]], "complex_inference() (pypath.core.annot.cellphonedb method)": [[12, "pypath.core.annot.CellPhoneDB.complex_inference"]], "coverage() (pypath.core.annot.cellphonedb method)": [[12, "pypath.core.annot.CellPhoneDB.coverage"]], "curation_effort() (pypath.core.annot.cellphonedb method)": [[12, "pypath.core.annot.CellPhoneDB.curation_effort"]], "get_names() (pypath.core.annot.cellphonedb method)": [[12, "pypath.core.annot.CellPhoneDB.get_names"]], "get_reference_set() (pypath.core.annot.cellphonedb static method)": [[12, "pypath.core.annot.CellPhoneDB.get_reference_set"]], "get_subset() (pypath.core.annot.cellphonedb method)": [[12, "pypath.core.annot.CellPhoneDB.get_subset"]], "get_subset_bool_array() (pypath.core.annot.cellphonedb method)": [[12, "pypath.core.annot.CellPhoneDB.get_subset_bool_array"]], "get_values() (pypath.core.annot.cellphonedb method)": [[12, "pypath.core.annot.CellPhoneDB.get_values"]], "labels() (pypath.core.annot.cellphonedb method)": [[12, "pypath.core.annot.CellPhoneDB.labels"]], "load() (pypath.core.annot.cellphonedb method)": [[12, "pypath.core.annot.CellPhoneDB.load"]], "load_data() (pypath.core.annot.cellphonedb method)": [[12, "pypath.core.annot.CellPhoneDB.load_data"]], "load_proteins() (pypath.core.annot.cellphonedb method)": [[12, "pypath.core.annot.CellPhoneDB.load_proteins"]], "make_df() (pypath.core.annot.cellphonedb method)": [[12, "pypath.core.annot.CellPhoneDB.make_df"]], "numof_entities() (pypath.core.annot.cellphonedb method)": [[12, "pypath.core.annot.CellPhoneDB.numof_entities"]], "numof_records() (pypath.core.annot.cellphonedb method)": [[12, "pypath.core.annot.CellPhoneDB.numof_records"]], "numof_references() (pypath.core.annot.cellphonedb method)": [[12, "pypath.core.annot.CellPhoneDB.numof_references"]], "process() (pypath.core.annot.cellphonedb method)": [[12, "pypath.core.annot.CellPhoneDB.process"]], "reload() (pypath.core.annot.cellphonedb method)": [[12, "pypath.core.annot.CellPhoneDB.reload"]], "select() (pypath.core.annot.cellphonedb method)": [[12, "pypath.core.annot.CellPhoneDB.select"]], "set_method() (pypath.core.annot.cellphonedb method)": [[12, "pypath.core.annot.CellPhoneDB.set_method"]], "set_reference_set() (pypath.core.annot.cellphonedb method)": [[12, "pypath.core.annot.CellPhoneDB.set_reference_set"]], "show() (pypath.core.annot.cellphonedb method)": [[12, "pypath.core.annot.CellPhoneDB.show"]], "subset_intersection() (pypath.core.annot.cellphonedb method)": [[12, "pypath.core.annot.CellPhoneDB.subset_intersection"]], "to_array() (pypath.core.annot.cellphonedb method)": [[12, "pypath.core.annot.CellPhoneDB.to_array"]], "to_bool_array() (pypath.core.annot.cellphonedb method)": [[12, "pypath.core.annot.CellPhoneDB.to_bool_array"]], "to_set() (pypath.core.annot.cellphonedb method)": [[12, "pypath.core.annot.CellPhoneDB.to_set"]], "cellphonedbcomplex (class in pypath.core.annot)": [[13, "pypath.core.annot.CellPhoneDBComplex"]], "__init__() (pypath.core.annot.cellphonedbcomplex method)": [[13, "pypath.core.annot.CellPhoneDBComplex.__init__"]], "add_complexes_by_inference() (pypath.core.annot.cellphonedbcomplex method)": [[13, "pypath.core.annot.CellPhoneDBComplex.add_complexes_by_inference"]], "all_complexes() (pypath.core.annot.cellphonedbcomplex method)": [[13, "pypath.core.annot.CellPhoneDBComplex.all_complexes"]], "all_entities() (pypath.core.annot.cellphonedbcomplex method)": [[13, "pypath.core.annot.CellPhoneDBComplex.all_entities"]], "all_mirnas() (pypath.core.annot.cellphonedbcomplex method)": [[13, "pypath.core.annot.CellPhoneDBComplex.all_mirnas"]], "all_proteins() (pypath.core.annot.cellphonedbcomplex method)": [[13, "pypath.core.annot.CellPhoneDBComplex.all_proteins"]], "all_refs() (pypath.core.annot.cellphonedbcomplex method)": [[13, "pypath.core.annot.CellPhoneDBComplex.all_refs"]], "annotate_complex() (pypath.core.annot.cellphonedbcomplex method)": [[13, "pypath.core.annot.CellPhoneDBComplex.annotate_complex"]], "browse() (pypath.core.annot.cellphonedbcomplex method)": [[13, "pypath.core.annot.CellPhoneDBComplex.browse"]], "complex_inference() (pypath.core.annot.cellphonedbcomplex method)": [[13, "pypath.core.annot.CellPhoneDBComplex.complex_inference"]], "coverage() (pypath.core.annot.cellphonedbcomplex method)": [[13, "pypath.core.annot.CellPhoneDBComplex.coverage"]], "curation_effort() (pypath.core.annot.cellphonedbcomplex method)": [[13, "pypath.core.annot.CellPhoneDBComplex.curation_effort"]], "get_names() (pypath.core.annot.cellphonedbcomplex method)": [[13, "pypath.core.annot.CellPhoneDBComplex.get_names"]], "get_reference_set() (pypath.core.annot.cellphonedbcomplex static method)": [[13, "pypath.core.annot.CellPhoneDBComplex.get_reference_set"]], "get_subset() (pypath.core.annot.cellphonedbcomplex method)": [[13, "pypath.core.annot.CellPhoneDBComplex.get_subset"]], "get_subset_bool_array() (pypath.core.annot.cellphonedbcomplex method)": [[13, "pypath.core.annot.CellPhoneDBComplex.get_subset_bool_array"]], "get_values() (pypath.core.annot.cellphonedbcomplex method)": [[13, "pypath.core.annot.CellPhoneDBComplex.get_values"]], "labels() (pypath.core.annot.cellphonedbcomplex method)": [[13, "pypath.core.annot.CellPhoneDBComplex.labels"]], "load() (pypath.core.annot.cellphonedbcomplex method)": [[13, "pypath.core.annot.CellPhoneDBComplex.load"]], "load_data() (pypath.core.annot.cellphonedbcomplex method)": [[13, "pypath.core.annot.CellPhoneDBComplex.load_data"]], "load_proteins() (pypath.core.annot.cellphonedbcomplex method)": [[13, "pypath.core.annot.CellPhoneDBComplex.load_proteins"]], "make_df() (pypath.core.annot.cellphonedbcomplex method)": [[13, "pypath.core.annot.CellPhoneDBComplex.make_df"]], "numof_entities() (pypath.core.annot.cellphonedbcomplex method)": [[13, "pypath.core.annot.CellPhoneDBComplex.numof_entities"]], "numof_records() (pypath.core.annot.cellphonedbcomplex method)": [[13, "pypath.core.annot.CellPhoneDBComplex.numof_records"]], "numof_references() (pypath.core.annot.cellphonedbcomplex method)": [[13, "pypath.core.annot.CellPhoneDBComplex.numof_references"]], "process() (pypath.core.annot.cellphonedbcomplex method)": [[13, "pypath.core.annot.CellPhoneDBComplex.process"]], "reload() (pypath.core.annot.cellphonedbcomplex method)": [[13, "pypath.core.annot.CellPhoneDBComplex.reload"]], "select() (pypath.core.annot.cellphonedbcomplex method)": [[13, "pypath.core.annot.CellPhoneDBComplex.select"]], "set_method() (pypath.core.annot.cellphonedbcomplex method)": [[13, "pypath.core.annot.CellPhoneDBComplex.set_method"]], "set_reference_set() (pypath.core.annot.cellphonedbcomplex method)": [[13, "pypath.core.annot.CellPhoneDBComplex.set_reference_set"]], "show() (pypath.core.annot.cellphonedbcomplex method)": [[13, "pypath.core.annot.CellPhoneDBComplex.show"]], "subset_intersection() (pypath.core.annot.cellphonedbcomplex method)": [[13, "pypath.core.annot.CellPhoneDBComplex.subset_intersection"]], "to_array() (pypath.core.annot.cellphonedbcomplex method)": [[13, "pypath.core.annot.CellPhoneDBComplex.to_array"]], "to_bool_array() (pypath.core.annot.cellphonedbcomplex method)": [[13, "pypath.core.annot.CellPhoneDBComplex.to_bool_array"]], "to_set() (pypath.core.annot.cellphonedbcomplex method)": [[13, "pypath.core.annot.CellPhoneDBComplex.to_set"]], "cellsurfaceproteinatlas (class in pypath.core.annot)": [[14, "pypath.core.annot.CellSurfaceProteinAtlas"]], "__init__() (pypath.core.annot.cellsurfaceproteinatlas method)": [[14, "pypath.core.annot.CellSurfaceProteinAtlas.__init__"]], "add_complexes_by_inference() (pypath.core.annot.cellsurfaceproteinatlas method)": [[14, "pypath.core.annot.CellSurfaceProteinAtlas.add_complexes_by_inference"]], "all_complexes() (pypath.core.annot.cellsurfaceproteinatlas method)": [[14, "pypath.core.annot.CellSurfaceProteinAtlas.all_complexes"]], "all_entities() (pypath.core.annot.cellsurfaceproteinatlas method)": [[14, "pypath.core.annot.CellSurfaceProteinAtlas.all_entities"]], "all_mirnas() (pypath.core.annot.cellsurfaceproteinatlas method)": [[14, "pypath.core.annot.CellSurfaceProteinAtlas.all_mirnas"]], "all_proteins() (pypath.core.annot.cellsurfaceproteinatlas method)": [[14, "pypath.core.annot.CellSurfaceProteinAtlas.all_proteins"]], "all_refs() (pypath.core.annot.cellsurfaceproteinatlas method)": [[14, "pypath.core.annot.CellSurfaceProteinAtlas.all_refs"]], "annotate_complex() (pypath.core.annot.cellsurfaceproteinatlas method)": [[14, "pypath.core.annot.CellSurfaceProteinAtlas.annotate_complex"]], "browse() (pypath.core.annot.cellsurfaceproteinatlas method)": [[14, "pypath.core.annot.CellSurfaceProteinAtlas.browse"]], "complex_inference() (pypath.core.annot.cellsurfaceproteinatlas method)": [[14, "pypath.core.annot.CellSurfaceProteinAtlas.complex_inference"]], "coverage() (pypath.core.annot.cellsurfaceproteinatlas method)": [[14, "pypath.core.annot.CellSurfaceProteinAtlas.coverage"]], "curation_effort() (pypath.core.annot.cellsurfaceproteinatlas method)": [[14, "pypath.core.annot.CellSurfaceProteinAtlas.curation_effort"]], "get_names() (pypath.core.annot.cellsurfaceproteinatlas method)": [[14, "pypath.core.annot.CellSurfaceProteinAtlas.get_names"]], "get_reference_set() (pypath.core.annot.cellsurfaceproteinatlas static method)": [[14, "pypath.core.annot.CellSurfaceProteinAtlas.get_reference_set"]], "get_subset() (pypath.core.annot.cellsurfaceproteinatlas method)": [[14, "pypath.core.annot.CellSurfaceProteinAtlas.get_subset"]], "get_subset_bool_array() (pypath.core.annot.cellsurfaceproteinatlas method)": [[14, "pypath.core.annot.CellSurfaceProteinAtlas.get_subset_bool_array"]], "get_values() (pypath.core.annot.cellsurfaceproteinatlas method)": [[14, "pypath.core.annot.CellSurfaceProteinAtlas.get_values"]], "labels() (pypath.core.annot.cellsurfaceproteinatlas method)": [[14, "pypath.core.annot.CellSurfaceProteinAtlas.labels"]], "load() (pypath.core.annot.cellsurfaceproteinatlas method)": [[14, "pypath.core.annot.CellSurfaceProteinAtlas.load"]], "load_data() (pypath.core.annot.cellsurfaceproteinatlas method)": [[14, "pypath.core.annot.CellSurfaceProteinAtlas.load_data"]], "load_proteins() (pypath.core.annot.cellsurfaceproteinatlas method)": [[14, "pypath.core.annot.CellSurfaceProteinAtlas.load_proteins"]], "make_df() (pypath.core.annot.cellsurfaceproteinatlas method)": [[14, "pypath.core.annot.CellSurfaceProteinAtlas.make_df"]], "numof_entities() (pypath.core.annot.cellsurfaceproteinatlas method)": [[14, "pypath.core.annot.CellSurfaceProteinAtlas.numof_entities"]], "numof_records() (pypath.core.annot.cellsurfaceproteinatlas method)": [[14, "pypath.core.annot.CellSurfaceProteinAtlas.numof_records"]], "numof_references() (pypath.core.annot.cellsurfaceproteinatlas method)": [[14, "pypath.core.annot.CellSurfaceProteinAtlas.numof_references"]], "process() (pypath.core.annot.cellsurfaceproteinatlas method)": [[14, "pypath.core.annot.CellSurfaceProteinAtlas.process"]], "reload() (pypath.core.annot.cellsurfaceproteinatlas method)": [[14, "pypath.core.annot.CellSurfaceProteinAtlas.reload"]], "select() (pypath.core.annot.cellsurfaceproteinatlas method)": [[14, "pypath.core.annot.CellSurfaceProteinAtlas.select"]], "set_method() (pypath.core.annot.cellsurfaceproteinatlas method)": [[14, "pypath.core.annot.CellSurfaceProteinAtlas.set_method"]], "set_reference_set() (pypath.core.annot.cellsurfaceproteinatlas method)": [[14, "pypath.core.annot.CellSurfaceProteinAtlas.set_reference_set"]], "show() (pypath.core.annot.cellsurfaceproteinatlas method)": [[14, "pypath.core.annot.CellSurfaceProteinAtlas.show"]], "subset_intersection() (pypath.core.annot.cellsurfaceproteinatlas method)": [[14, "pypath.core.annot.CellSurfaceProteinAtlas.subset_intersection"]], "to_array() (pypath.core.annot.cellsurfaceproteinatlas method)": [[14, "pypath.core.annot.CellSurfaceProteinAtlas.to_array"]], "to_bool_array() (pypath.core.annot.cellsurfaceproteinatlas method)": [[14, "pypath.core.annot.CellSurfaceProteinAtlas.to_bool_array"]], "to_set() (pypath.core.annot.cellsurfaceproteinatlas method)": [[14, "pypath.core.annot.CellSurfaceProteinAtlas.to_set"]], "cellsurfaceproteinatlascelltype (class in pypath.core.annot)": [[15, "pypath.core.annot.CellSurfaceProteinAtlasCellType"]], "__init__() (pypath.core.annot.cellsurfaceproteinatlascelltype method)": [[15, "pypath.core.annot.CellSurfaceProteinAtlasCellType.__init__"]], "add_complexes_by_inference() (pypath.core.annot.cellsurfaceproteinatlascelltype method)": [[15, "pypath.core.annot.CellSurfaceProteinAtlasCellType.add_complexes_by_inference"]], "all_complexes() (pypath.core.annot.cellsurfaceproteinatlascelltype method)": [[15, "pypath.core.annot.CellSurfaceProteinAtlasCellType.all_complexes"]], "all_entities() (pypath.core.annot.cellsurfaceproteinatlascelltype method)": [[15, "pypath.core.annot.CellSurfaceProteinAtlasCellType.all_entities"]], "all_mirnas() (pypath.core.annot.cellsurfaceproteinatlascelltype method)": [[15, "pypath.core.annot.CellSurfaceProteinAtlasCellType.all_mirnas"]], "all_proteins() (pypath.core.annot.cellsurfaceproteinatlascelltype method)": [[15, "pypath.core.annot.CellSurfaceProteinAtlasCellType.all_proteins"]], "all_refs() (pypath.core.annot.cellsurfaceproteinatlascelltype method)": [[15, "pypath.core.annot.CellSurfaceProteinAtlasCellType.all_refs"]], "annotate_complex() (pypath.core.annot.cellsurfaceproteinatlascelltype method)": [[15, "pypath.core.annot.CellSurfaceProteinAtlasCellType.annotate_complex"]], "browse() (pypath.core.annot.cellsurfaceproteinatlascelltype method)": [[15, "pypath.core.annot.CellSurfaceProteinAtlasCellType.browse"]], "complex_inference() (pypath.core.annot.cellsurfaceproteinatlascelltype method)": [[15, "pypath.core.annot.CellSurfaceProteinAtlasCellType.complex_inference"]], "coverage() (pypath.core.annot.cellsurfaceproteinatlascelltype method)": [[15, "pypath.core.annot.CellSurfaceProteinAtlasCellType.coverage"]], "curation_effort() (pypath.core.annot.cellsurfaceproteinatlascelltype method)": [[15, "pypath.core.annot.CellSurfaceProteinAtlasCellType.curation_effort"]], "get_names() (pypath.core.annot.cellsurfaceproteinatlascelltype method)": [[15, "pypath.core.annot.CellSurfaceProteinAtlasCellType.get_names"]], "get_reference_set() (pypath.core.annot.cellsurfaceproteinatlascelltype static method)": [[15, "pypath.core.annot.CellSurfaceProteinAtlasCellType.get_reference_set"]], "get_subset() (pypath.core.annot.cellsurfaceproteinatlascelltype method)": [[15, "pypath.core.annot.CellSurfaceProteinAtlasCellType.get_subset"]], "get_subset_bool_array() (pypath.core.annot.cellsurfaceproteinatlascelltype method)": [[15, "pypath.core.annot.CellSurfaceProteinAtlasCellType.get_subset_bool_array"]], "get_values() (pypath.core.annot.cellsurfaceproteinatlascelltype method)": [[15, "pypath.core.annot.CellSurfaceProteinAtlasCellType.get_values"]], "labels() (pypath.core.annot.cellsurfaceproteinatlascelltype method)": [[15, "pypath.core.annot.CellSurfaceProteinAtlasCellType.labels"]], "load() (pypath.core.annot.cellsurfaceproteinatlascelltype method)": [[15, "pypath.core.annot.CellSurfaceProteinAtlasCellType.load"]], "load_data() (pypath.core.annot.cellsurfaceproteinatlascelltype method)": [[15, "pypath.core.annot.CellSurfaceProteinAtlasCellType.load_data"]], "load_proteins() (pypath.core.annot.cellsurfaceproteinatlascelltype method)": [[15, "pypath.core.annot.CellSurfaceProteinAtlasCellType.load_proteins"]], "make_df() (pypath.core.annot.cellsurfaceproteinatlascelltype method)": [[15, "pypath.core.annot.CellSurfaceProteinAtlasCellType.make_df"]], "numof_entities() (pypath.core.annot.cellsurfaceproteinatlascelltype method)": [[15, "pypath.core.annot.CellSurfaceProteinAtlasCellType.numof_entities"]], "numof_records() (pypath.core.annot.cellsurfaceproteinatlascelltype method)": [[15, "pypath.core.annot.CellSurfaceProteinAtlasCellType.numof_records"]], "numof_references() (pypath.core.annot.cellsurfaceproteinatlascelltype method)": [[15, "pypath.core.annot.CellSurfaceProteinAtlasCellType.numof_references"]], "process() (pypath.core.annot.cellsurfaceproteinatlascelltype method)": [[15, "pypath.core.annot.CellSurfaceProteinAtlasCellType.process"]], "reload() (pypath.core.annot.cellsurfaceproteinatlascelltype method)": [[15, "pypath.core.annot.CellSurfaceProteinAtlasCellType.reload"]], "select() (pypath.core.annot.cellsurfaceproteinatlascelltype method)": [[15, "pypath.core.annot.CellSurfaceProteinAtlasCellType.select"]], "set_method() (pypath.core.annot.cellsurfaceproteinatlascelltype method)": [[15, "pypath.core.annot.CellSurfaceProteinAtlasCellType.set_method"]], "set_reference_set() (pypath.core.annot.cellsurfaceproteinatlascelltype method)": [[15, "pypath.core.annot.CellSurfaceProteinAtlasCellType.set_reference_set"]], "show() (pypath.core.annot.cellsurfaceproteinatlascelltype method)": [[15, "pypath.core.annot.CellSurfaceProteinAtlasCellType.show"]], "subset_intersection() (pypath.core.annot.cellsurfaceproteinatlascelltype method)": [[15, "pypath.core.annot.CellSurfaceProteinAtlasCellType.subset_intersection"]], "to_array() (pypath.core.annot.cellsurfaceproteinatlascelltype method)": [[15, "pypath.core.annot.CellSurfaceProteinAtlasCellType.to_array"]], "to_bool_array() (pypath.core.annot.cellsurfaceproteinatlascelltype method)": [[15, "pypath.core.annot.CellSurfaceProteinAtlasCellType.to_bool_array"]], "to_set() (pypath.core.annot.cellsurfaceproteinatlascelltype method)": [[15, "pypath.core.annot.CellSurfaceProteinAtlasCellType.to_set"]], "cellcall (class in pypath.core.annot)": [[16, "pypath.core.annot.Cellcall"]], "__init__() (pypath.core.annot.cellcall method)": [[16, "pypath.core.annot.Cellcall.__init__"]], "add_complexes_by_inference() (pypath.core.annot.cellcall method)": [[16, "pypath.core.annot.Cellcall.add_complexes_by_inference"]], "all_complexes() (pypath.core.annot.cellcall method)": [[16, "pypath.core.annot.Cellcall.all_complexes"]], "all_entities() (pypath.core.annot.cellcall method)": [[16, "pypath.core.annot.Cellcall.all_entities"]], "all_mirnas() (pypath.core.annot.cellcall method)": [[16, "pypath.core.annot.Cellcall.all_mirnas"]], "all_proteins() (pypath.core.annot.cellcall method)": [[16, "pypath.core.annot.Cellcall.all_proteins"]], "all_refs() (pypath.core.annot.cellcall method)": [[16, "pypath.core.annot.Cellcall.all_refs"]], "annotate_complex() (pypath.core.annot.cellcall method)": [[16, "pypath.core.annot.Cellcall.annotate_complex"]], "browse() (pypath.core.annot.cellcall method)": [[16, "pypath.core.annot.Cellcall.browse"]], "complex_inference() (pypath.core.annot.cellcall method)": [[16, "pypath.core.annot.Cellcall.complex_inference"]], "coverage() (pypath.core.annot.cellcall method)": [[16, "pypath.core.annot.Cellcall.coverage"]], "curation_effort() (pypath.core.annot.cellcall method)": [[16, "pypath.core.annot.Cellcall.curation_effort"]], "get_names() (pypath.core.annot.cellcall method)": [[16, "pypath.core.annot.Cellcall.get_names"]], "get_reference_set() (pypath.core.annot.cellcall static method)": [[16, "pypath.core.annot.Cellcall.get_reference_set"]], "get_subset() (pypath.core.annot.cellcall method)": [[16, "pypath.core.annot.Cellcall.get_subset"]], "get_subset_bool_array() (pypath.core.annot.cellcall method)": [[16, "pypath.core.annot.Cellcall.get_subset_bool_array"]], "get_values() (pypath.core.annot.cellcall method)": [[16, "pypath.core.annot.Cellcall.get_values"]], "labels() (pypath.core.annot.cellcall method)": [[16, "pypath.core.annot.Cellcall.labels"]], "load() (pypath.core.annot.cellcall method)": [[16, "pypath.core.annot.Cellcall.load"]], "load_data() (pypath.core.annot.cellcall method)": [[16, "pypath.core.annot.Cellcall.load_data"]], "load_proteins() (pypath.core.annot.cellcall method)": [[16, "pypath.core.annot.Cellcall.load_proteins"]], "make_df() (pypath.core.annot.cellcall method)": [[16, "pypath.core.annot.Cellcall.make_df"]], "numof_entities() (pypath.core.annot.cellcall method)": [[16, "pypath.core.annot.Cellcall.numof_entities"]], "numof_records() (pypath.core.annot.cellcall method)": [[16, "pypath.core.annot.Cellcall.numof_records"]], "numof_references() (pypath.core.annot.cellcall method)": [[16, "pypath.core.annot.Cellcall.numof_references"]], "process() (pypath.core.annot.cellcall method)": [[16, "pypath.core.annot.Cellcall.process"]], "reload() (pypath.core.annot.cellcall method)": [[16, "pypath.core.annot.Cellcall.reload"]], "select() (pypath.core.annot.cellcall method)": [[16, "pypath.core.annot.Cellcall.select"]], "set_method() (pypath.core.annot.cellcall method)": [[16, "pypath.core.annot.Cellcall.set_method"]], "set_reference_set() (pypath.core.annot.cellcall method)": [[16, "pypath.core.annot.Cellcall.set_reference_set"]], "show() (pypath.core.annot.cellcall method)": [[16, "pypath.core.annot.Cellcall.show"]], "subset_intersection() (pypath.core.annot.cellcall method)": [[16, "pypath.core.annot.Cellcall.subset_intersection"]], "to_array() (pypath.core.annot.cellcall method)": [[16, "pypath.core.annot.Cellcall.to_array"]], "to_bool_array() (pypath.core.annot.cellcall method)": [[16, "pypath.core.annot.Cellcall.to_bool_array"]], "to_set() (pypath.core.annot.cellcall method)": [[16, "pypath.core.annot.Cellcall.to_set"]], "cellcellinteractions (class in pypath.core.annot)": [[17, "pypath.core.annot.Cellcellinteractions"]], "__init__() (pypath.core.annot.cellcellinteractions method)": [[17, "pypath.core.annot.Cellcellinteractions.__init__"]], "add_complexes_by_inference() (pypath.core.annot.cellcellinteractions method)": [[17, "pypath.core.annot.Cellcellinteractions.add_complexes_by_inference"]], "all_complexes() (pypath.core.annot.cellcellinteractions method)": [[17, "pypath.core.annot.Cellcellinteractions.all_complexes"]], "all_entities() (pypath.core.annot.cellcellinteractions method)": [[17, "pypath.core.annot.Cellcellinteractions.all_entities"]], "all_mirnas() (pypath.core.annot.cellcellinteractions method)": [[17, "pypath.core.annot.Cellcellinteractions.all_mirnas"]], "all_proteins() (pypath.core.annot.cellcellinteractions method)": [[17, "pypath.core.annot.Cellcellinteractions.all_proteins"]], "all_refs() (pypath.core.annot.cellcellinteractions method)": [[17, "pypath.core.annot.Cellcellinteractions.all_refs"]], "annotate_complex() (pypath.core.annot.cellcellinteractions method)": [[17, "pypath.core.annot.Cellcellinteractions.annotate_complex"]], "browse() (pypath.core.annot.cellcellinteractions method)": [[17, "pypath.core.annot.Cellcellinteractions.browse"]], "complex_inference() (pypath.core.annot.cellcellinteractions method)": [[17, "pypath.core.annot.Cellcellinteractions.complex_inference"]], "coverage() (pypath.core.annot.cellcellinteractions method)": [[17, "pypath.core.annot.Cellcellinteractions.coverage"]], "curation_effort() (pypath.core.annot.cellcellinteractions method)": [[17, "pypath.core.annot.Cellcellinteractions.curation_effort"]], "get_names() (pypath.core.annot.cellcellinteractions method)": [[17, "pypath.core.annot.Cellcellinteractions.get_names"]], "get_reference_set() (pypath.core.annot.cellcellinteractions static method)": [[17, "pypath.core.annot.Cellcellinteractions.get_reference_set"]], "get_subset() (pypath.core.annot.cellcellinteractions method)": [[17, "pypath.core.annot.Cellcellinteractions.get_subset"]], "get_subset_bool_array() (pypath.core.annot.cellcellinteractions method)": [[17, "pypath.core.annot.Cellcellinteractions.get_subset_bool_array"]], "get_values() (pypath.core.annot.cellcellinteractions method)": [[17, "pypath.core.annot.Cellcellinteractions.get_values"]], "labels() (pypath.core.annot.cellcellinteractions method)": [[17, "pypath.core.annot.Cellcellinteractions.labels"]], "load() (pypath.core.annot.cellcellinteractions method)": [[17, "pypath.core.annot.Cellcellinteractions.load"]], "load_data() (pypath.core.annot.cellcellinteractions method)": [[17, "pypath.core.annot.Cellcellinteractions.load_data"]], "load_proteins() (pypath.core.annot.cellcellinteractions method)": [[17, "pypath.core.annot.Cellcellinteractions.load_proteins"]], "make_df() (pypath.core.annot.cellcellinteractions method)": [[17, "pypath.core.annot.Cellcellinteractions.make_df"]], "numof_entities() (pypath.core.annot.cellcellinteractions method)": [[17, "pypath.core.annot.Cellcellinteractions.numof_entities"]], "numof_records() (pypath.core.annot.cellcellinteractions method)": [[17, "pypath.core.annot.Cellcellinteractions.numof_records"]], "numof_references() (pypath.core.annot.cellcellinteractions method)": [[17, "pypath.core.annot.Cellcellinteractions.numof_references"]], "process() (pypath.core.annot.cellcellinteractions method)": [[17, "pypath.core.annot.Cellcellinteractions.process"]], "reload() (pypath.core.annot.cellcellinteractions method)": [[17, "pypath.core.annot.Cellcellinteractions.reload"]], "select() (pypath.core.annot.cellcellinteractions method)": [[17, "pypath.core.annot.Cellcellinteractions.select"]], "set_method() (pypath.core.annot.cellcellinteractions method)": [[17, "pypath.core.annot.Cellcellinteractions.set_method"]], "set_reference_set() (pypath.core.annot.cellcellinteractions method)": [[17, "pypath.core.annot.Cellcellinteractions.set_reference_set"]], "show() (pypath.core.annot.cellcellinteractions method)": [[17, "pypath.core.annot.Cellcellinteractions.show"]], "subset_intersection() (pypath.core.annot.cellcellinteractions method)": [[17, "pypath.core.annot.Cellcellinteractions.subset_intersection"]], "to_array() (pypath.core.annot.cellcellinteractions method)": [[17, "pypath.core.annot.Cellcellinteractions.to_array"]], "to_bool_array() (pypath.core.annot.cellcellinteractions method)": [[17, "pypath.core.annot.Cellcellinteractions.to_bool_array"]], "to_set() (pypath.core.annot.cellcellinteractions method)": [[17, "pypath.core.annot.Cellcellinteractions.to_set"]], "cellchatdb (class in pypath.core.annot)": [[18, "pypath.core.annot.Cellchatdb"]], "__init__() (pypath.core.annot.cellchatdb method)": [[18, "pypath.core.annot.Cellchatdb.__init__"]], "add_complexes_by_inference() (pypath.core.annot.cellchatdb method)": [[18, "pypath.core.annot.Cellchatdb.add_complexes_by_inference"]], "all_complexes() (pypath.core.annot.cellchatdb method)": [[18, "pypath.core.annot.Cellchatdb.all_complexes"]], "all_entities() (pypath.core.annot.cellchatdb method)": [[18, "pypath.core.annot.Cellchatdb.all_entities"]], "all_mirnas() (pypath.core.annot.cellchatdb method)": [[18, "pypath.core.annot.Cellchatdb.all_mirnas"]], "all_proteins() (pypath.core.annot.cellchatdb method)": [[18, "pypath.core.annot.Cellchatdb.all_proteins"]], "all_refs() (pypath.core.annot.cellchatdb method)": [[18, "pypath.core.annot.Cellchatdb.all_refs"]], "annotate_complex() (pypath.core.annot.cellchatdb method)": [[18, "pypath.core.annot.Cellchatdb.annotate_complex"]], "browse() (pypath.core.annot.cellchatdb method)": [[18, "pypath.core.annot.Cellchatdb.browse"]], "complex_inference() (pypath.core.annot.cellchatdb method)": [[18, "pypath.core.annot.Cellchatdb.complex_inference"]], "coverage() (pypath.core.annot.cellchatdb method)": [[18, "pypath.core.annot.Cellchatdb.coverage"]], "curation_effort() (pypath.core.annot.cellchatdb method)": [[18, "pypath.core.annot.Cellchatdb.curation_effort"]], "get_names() (pypath.core.annot.cellchatdb method)": [[18, "pypath.core.annot.Cellchatdb.get_names"]], "get_reference_set() (pypath.core.annot.cellchatdb static method)": [[18, "pypath.core.annot.Cellchatdb.get_reference_set"]], "get_subset() (pypath.core.annot.cellchatdb method)": [[18, "pypath.core.annot.Cellchatdb.get_subset"]], "get_subset_bool_array() (pypath.core.annot.cellchatdb method)": [[18, "pypath.core.annot.Cellchatdb.get_subset_bool_array"]], "get_values() (pypath.core.annot.cellchatdb method)": [[18, "pypath.core.annot.Cellchatdb.get_values"]], "labels() (pypath.core.annot.cellchatdb method)": [[18, "pypath.core.annot.Cellchatdb.labels"]], "load() (pypath.core.annot.cellchatdb method)": [[18, "pypath.core.annot.Cellchatdb.load"]], "load_data() (pypath.core.annot.cellchatdb method)": [[18, "pypath.core.annot.Cellchatdb.load_data"]], "load_proteins() (pypath.core.annot.cellchatdb method)": [[18, "pypath.core.annot.Cellchatdb.load_proteins"]], "make_df() (pypath.core.annot.cellchatdb method)": [[18, "pypath.core.annot.Cellchatdb.make_df"]], "numof_entities() (pypath.core.annot.cellchatdb method)": [[18, "pypath.core.annot.Cellchatdb.numof_entities"]], "numof_records() (pypath.core.annot.cellchatdb method)": [[18, "pypath.core.annot.Cellchatdb.numof_records"]], "numof_references() (pypath.core.annot.cellchatdb method)": [[18, "pypath.core.annot.Cellchatdb.numof_references"]], "process() (pypath.core.annot.cellchatdb method)": [[18, "pypath.core.annot.Cellchatdb.process"]], "reload() (pypath.core.annot.cellchatdb method)": [[18, "pypath.core.annot.Cellchatdb.reload"]], "select() (pypath.core.annot.cellchatdb method)": [[18, "pypath.core.annot.Cellchatdb.select"]], "set_method() (pypath.core.annot.cellchatdb method)": [[18, "pypath.core.annot.Cellchatdb.set_method"]], "set_reference_set() (pypath.core.annot.cellchatdb method)": [[18, "pypath.core.annot.Cellchatdb.set_reference_set"]], "show() (pypath.core.annot.cellchatdb method)": [[18, "pypath.core.annot.Cellchatdb.show"]], "subset_intersection() (pypath.core.annot.cellchatdb method)": [[18, "pypath.core.annot.Cellchatdb.subset_intersection"]], "to_array() (pypath.core.annot.cellchatdb method)": [[18, "pypath.core.annot.Cellchatdb.to_array"]], "to_bool_array() (pypath.core.annot.cellchatdb method)": [[18, "pypath.core.annot.Cellchatdb.to_bool_array"]], "to_set() (pypath.core.annot.cellchatdb method)": [[18, "pypath.core.annot.Cellchatdb.to_set"]], "cellchatdbcomplex (class in pypath.core.annot)": [[19, "pypath.core.annot.CellchatdbComplex"]], "__init__() (pypath.core.annot.cellchatdbcomplex method)": [[19, "pypath.core.annot.CellchatdbComplex.__init__"]], "add_complexes_by_inference() (pypath.core.annot.cellchatdbcomplex method)": [[19, "pypath.core.annot.CellchatdbComplex.add_complexes_by_inference"]], "all_complexes() (pypath.core.annot.cellchatdbcomplex method)": [[19, "pypath.core.annot.CellchatdbComplex.all_complexes"]], "all_entities() (pypath.core.annot.cellchatdbcomplex method)": [[19, "pypath.core.annot.CellchatdbComplex.all_entities"]], "all_mirnas() (pypath.core.annot.cellchatdbcomplex method)": [[19, "pypath.core.annot.CellchatdbComplex.all_mirnas"]], "all_proteins() (pypath.core.annot.cellchatdbcomplex method)": [[19, "pypath.core.annot.CellchatdbComplex.all_proteins"]], "all_refs() (pypath.core.annot.cellchatdbcomplex method)": [[19, "pypath.core.annot.CellchatdbComplex.all_refs"]], "annotate_complex() (pypath.core.annot.cellchatdbcomplex method)": [[19, "pypath.core.annot.CellchatdbComplex.annotate_complex"]], "browse() (pypath.core.annot.cellchatdbcomplex method)": [[19, "pypath.core.annot.CellchatdbComplex.browse"]], "complex_inference() (pypath.core.annot.cellchatdbcomplex method)": [[19, "pypath.core.annot.CellchatdbComplex.complex_inference"]], "coverage() (pypath.core.annot.cellchatdbcomplex method)": [[19, "pypath.core.annot.CellchatdbComplex.coverage"]], "curation_effort() (pypath.core.annot.cellchatdbcomplex method)": [[19, "pypath.core.annot.CellchatdbComplex.curation_effort"]], "get_names() (pypath.core.annot.cellchatdbcomplex method)": [[19, "pypath.core.annot.CellchatdbComplex.get_names"]], "get_reference_set() (pypath.core.annot.cellchatdbcomplex static method)": [[19, "pypath.core.annot.CellchatdbComplex.get_reference_set"]], "get_subset() (pypath.core.annot.cellchatdbcomplex method)": [[19, "pypath.core.annot.CellchatdbComplex.get_subset"]], "get_subset_bool_array() (pypath.core.annot.cellchatdbcomplex method)": [[19, "pypath.core.annot.CellchatdbComplex.get_subset_bool_array"]], "get_values() (pypath.core.annot.cellchatdbcomplex method)": [[19, "pypath.core.annot.CellchatdbComplex.get_values"]], "labels() (pypath.core.annot.cellchatdbcomplex method)": [[19, "pypath.core.annot.CellchatdbComplex.labels"]], "load() (pypath.core.annot.cellchatdbcomplex method)": [[19, "pypath.core.annot.CellchatdbComplex.load"]], "load_data() (pypath.core.annot.cellchatdbcomplex method)": [[19, "pypath.core.annot.CellchatdbComplex.load_data"]], "load_proteins() (pypath.core.annot.cellchatdbcomplex method)": [[19, "pypath.core.annot.CellchatdbComplex.load_proteins"]], "make_df() (pypath.core.annot.cellchatdbcomplex method)": [[19, "pypath.core.annot.CellchatdbComplex.make_df"]], "numof_entities() (pypath.core.annot.cellchatdbcomplex method)": [[19, "pypath.core.annot.CellchatdbComplex.numof_entities"]], "numof_records() (pypath.core.annot.cellchatdbcomplex method)": [[19, "pypath.core.annot.CellchatdbComplex.numof_records"]], "numof_references() (pypath.core.annot.cellchatdbcomplex method)": [[19, "pypath.core.annot.CellchatdbComplex.numof_references"]], "process() (pypath.core.annot.cellchatdbcomplex method)": [[19, "pypath.core.annot.CellchatdbComplex.process"]], "reload() (pypath.core.annot.cellchatdbcomplex method)": [[19, "pypath.core.annot.CellchatdbComplex.reload"]], "select() (pypath.core.annot.cellchatdbcomplex method)": [[19, "pypath.core.annot.CellchatdbComplex.select"]], "set_method() (pypath.core.annot.cellchatdbcomplex method)": [[19, "pypath.core.annot.CellchatdbComplex.set_method"]], "set_reference_set() (pypath.core.annot.cellchatdbcomplex method)": [[19, "pypath.core.annot.CellchatdbComplex.set_reference_set"]], "show() (pypath.core.annot.cellchatdbcomplex method)": [[19, "pypath.core.annot.CellchatdbComplex.show"]], "subset_intersection() (pypath.core.annot.cellchatdbcomplex method)": [[19, "pypath.core.annot.CellchatdbComplex.subset_intersection"]], "to_array() (pypath.core.annot.cellchatdbcomplex method)": [[19, "pypath.core.annot.CellchatdbComplex.to_array"]], "to_bool_array() (pypath.core.annot.cellchatdbcomplex method)": [[19, "pypath.core.annot.CellchatdbComplex.to_bool_array"]], "to_set() (pypath.core.annot.cellchatdbcomplex method)": [[19, "pypath.core.annot.CellchatdbComplex.to_set"]], "cellinker (class in pypath.core.annot)": [[20, "pypath.core.annot.Cellinker"]], "__init__() (pypath.core.annot.cellinker method)": [[20, "pypath.core.annot.Cellinker.__init__"]], "add_complexes_by_inference() (pypath.core.annot.cellinker method)": [[20, "pypath.core.annot.Cellinker.add_complexes_by_inference"]], "all_complexes() (pypath.core.annot.cellinker method)": [[20, "pypath.core.annot.Cellinker.all_complexes"]], "all_entities() (pypath.core.annot.cellinker method)": [[20, "pypath.core.annot.Cellinker.all_entities"]], "all_mirnas() (pypath.core.annot.cellinker method)": [[20, "pypath.core.annot.Cellinker.all_mirnas"]], "all_proteins() (pypath.core.annot.cellinker method)": [[20, "pypath.core.annot.Cellinker.all_proteins"]], "all_refs() (pypath.core.annot.cellinker method)": [[20, "pypath.core.annot.Cellinker.all_refs"]], "annotate_complex() (pypath.core.annot.cellinker method)": [[20, "pypath.core.annot.Cellinker.annotate_complex"]], "browse() (pypath.core.annot.cellinker method)": [[20, "pypath.core.annot.Cellinker.browse"]], "complex_inference() (pypath.core.annot.cellinker method)": [[20, "pypath.core.annot.Cellinker.complex_inference"]], "coverage() (pypath.core.annot.cellinker method)": [[20, "pypath.core.annot.Cellinker.coverage"]], "curation_effort() (pypath.core.annot.cellinker method)": [[20, "pypath.core.annot.Cellinker.curation_effort"]], "get_names() (pypath.core.annot.cellinker method)": [[20, "pypath.core.annot.Cellinker.get_names"]], "get_reference_set() (pypath.core.annot.cellinker static method)": [[20, "pypath.core.annot.Cellinker.get_reference_set"]], "get_subset() (pypath.core.annot.cellinker method)": [[20, "pypath.core.annot.Cellinker.get_subset"]], "get_subset_bool_array() (pypath.core.annot.cellinker method)": [[20, "pypath.core.annot.Cellinker.get_subset_bool_array"]], "get_values() (pypath.core.annot.cellinker method)": [[20, "pypath.core.annot.Cellinker.get_values"]], "labels() (pypath.core.annot.cellinker method)": [[20, "pypath.core.annot.Cellinker.labels"]], "load() (pypath.core.annot.cellinker method)": [[20, "pypath.core.annot.Cellinker.load"]], "load_data() (pypath.core.annot.cellinker method)": [[20, "pypath.core.annot.Cellinker.load_data"]], "load_proteins() (pypath.core.annot.cellinker method)": [[20, "pypath.core.annot.Cellinker.load_proteins"]], "make_df() (pypath.core.annot.cellinker method)": [[20, "pypath.core.annot.Cellinker.make_df"]], "numof_entities() (pypath.core.annot.cellinker method)": [[20, "pypath.core.annot.Cellinker.numof_entities"]], "numof_records() (pypath.core.annot.cellinker method)": [[20, "pypath.core.annot.Cellinker.numof_records"]], "numof_references() (pypath.core.annot.cellinker method)": [[20, "pypath.core.annot.Cellinker.numof_references"]], "process() (pypath.core.annot.cellinker method)": [[20, "pypath.core.annot.Cellinker.process"]], "reload() (pypath.core.annot.cellinker method)": [[20, "pypath.core.annot.Cellinker.reload"]], "select() (pypath.core.annot.cellinker method)": [[20, "pypath.core.annot.Cellinker.select"]], "set_method() (pypath.core.annot.cellinker method)": [[20, "pypath.core.annot.Cellinker.set_method"]], "set_reference_set() (pypath.core.annot.cellinker method)": [[20, "pypath.core.annot.Cellinker.set_reference_set"]], "show() (pypath.core.annot.cellinker method)": [[20, "pypath.core.annot.Cellinker.show"]], "subset_intersection() (pypath.core.annot.cellinker method)": [[20, "pypath.core.annot.Cellinker.subset_intersection"]], "to_array() (pypath.core.annot.cellinker method)": [[20, "pypath.core.annot.Cellinker.to_array"]], "to_bool_array() (pypath.core.annot.cellinker method)": [[20, "pypath.core.annot.Cellinker.to_bool_array"]], "to_set() (pypath.core.annot.cellinker method)": [[20, "pypath.core.annot.Cellinker.to_set"]], "cellinkercomplex (class in pypath.core.annot)": [[21, "pypath.core.annot.CellinkerComplex"]], "__init__() (pypath.core.annot.cellinkercomplex method)": [[21, "pypath.core.annot.CellinkerComplex.__init__"]], "add_complexes_by_inference() (pypath.core.annot.cellinkercomplex method)": [[21, "pypath.core.annot.CellinkerComplex.add_complexes_by_inference"]], "all_complexes() (pypath.core.annot.cellinkercomplex method)": [[21, "pypath.core.annot.CellinkerComplex.all_complexes"]], "all_entities() (pypath.core.annot.cellinkercomplex method)": [[21, "pypath.core.annot.CellinkerComplex.all_entities"]], "all_mirnas() (pypath.core.annot.cellinkercomplex method)": [[21, "pypath.core.annot.CellinkerComplex.all_mirnas"]], "all_proteins() (pypath.core.annot.cellinkercomplex method)": [[21, "pypath.core.annot.CellinkerComplex.all_proteins"]], "all_refs() (pypath.core.annot.cellinkercomplex method)": [[21, "pypath.core.annot.CellinkerComplex.all_refs"]], "annotate_complex() (pypath.core.annot.cellinkercomplex method)": [[21, "pypath.core.annot.CellinkerComplex.annotate_complex"]], "browse() (pypath.core.annot.cellinkercomplex method)": [[21, "pypath.core.annot.CellinkerComplex.browse"]], "complex_inference() (pypath.core.annot.cellinkercomplex method)": [[21, "pypath.core.annot.CellinkerComplex.complex_inference"]], "coverage() (pypath.core.annot.cellinkercomplex method)": [[21, "pypath.core.annot.CellinkerComplex.coverage"]], "curation_effort() (pypath.core.annot.cellinkercomplex method)": [[21, "pypath.core.annot.CellinkerComplex.curation_effort"]], "get_names() (pypath.core.annot.cellinkercomplex method)": [[21, "pypath.core.annot.CellinkerComplex.get_names"]], "get_reference_set() (pypath.core.annot.cellinkercomplex static method)": [[21, "pypath.core.annot.CellinkerComplex.get_reference_set"]], "get_subset() (pypath.core.annot.cellinkercomplex method)": [[21, "pypath.core.annot.CellinkerComplex.get_subset"]], "get_subset_bool_array() (pypath.core.annot.cellinkercomplex method)": [[21, "pypath.core.annot.CellinkerComplex.get_subset_bool_array"]], "get_values() (pypath.core.annot.cellinkercomplex method)": [[21, "pypath.core.annot.CellinkerComplex.get_values"]], "labels() (pypath.core.annot.cellinkercomplex method)": [[21, "pypath.core.annot.CellinkerComplex.labels"]], "load() (pypath.core.annot.cellinkercomplex method)": [[21, "pypath.core.annot.CellinkerComplex.load"]], "load_data() (pypath.core.annot.cellinkercomplex method)": [[21, "pypath.core.annot.CellinkerComplex.load_data"]], "load_proteins() (pypath.core.annot.cellinkercomplex method)": [[21, "pypath.core.annot.CellinkerComplex.load_proteins"]], "make_df() (pypath.core.annot.cellinkercomplex method)": [[21, "pypath.core.annot.CellinkerComplex.make_df"]], "numof_entities() (pypath.core.annot.cellinkercomplex method)": [[21, "pypath.core.annot.CellinkerComplex.numof_entities"]], "numof_records() (pypath.core.annot.cellinkercomplex method)": [[21, "pypath.core.annot.CellinkerComplex.numof_records"]], "numof_references() (pypath.core.annot.cellinkercomplex method)": [[21, "pypath.core.annot.CellinkerComplex.numof_references"]], "process() (pypath.core.annot.cellinkercomplex method)": [[21, "pypath.core.annot.CellinkerComplex.process"]], "reload() (pypath.core.annot.cellinkercomplex method)": [[21, "pypath.core.annot.CellinkerComplex.reload"]], "select() (pypath.core.annot.cellinkercomplex method)": [[21, "pypath.core.annot.CellinkerComplex.select"]], "set_method() (pypath.core.annot.cellinkercomplex method)": [[21, "pypath.core.annot.CellinkerComplex.set_method"]], "set_reference_set() (pypath.core.annot.cellinkercomplex method)": [[21, "pypath.core.annot.CellinkerComplex.set_reference_set"]], "show() (pypath.core.annot.cellinkercomplex method)": [[21, "pypath.core.annot.CellinkerComplex.show"]], "subset_intersection() (pypath.core.annot.cellinkercomplex method)": [[21, "pypath.core.annot.CellinkerComplex.subset_intersection"]], "to_array() (pypath.core.annot.cellinkercomplex method)": [[21, "pypath.core.annot.CellinkerComplex.to_array"]], "to_bool_array() (pypath.core.annot.cellinkercomplex method)": [[21, "pypath.core.annot.CellinkerComplex.to_bool_array"]], "to_set() (pypath.core.annot.cellinkercomplex method)": [[21, "pypath.core.annot.CellinkerComplex.to_set"]], "celltalkdb (class in pypath.core.annot)": [[22, "pypath.core.annot.Celltalkdb"]], "__init__() (pypath.core.annot.celltalkdb method)": [[22, "pypath.core.annot.Celltalkdb.__init__"]], "add_complexes_by_inference() (pypath.core.annot.celltalkdb method)": [[22, "pypath.core.annot.Celltalkdb.add_complexes_by_inference"]], "all_complexes() (pypath.core.annot.celltalkdb method)": [[22, "pypath.core.annot.Celltalkdb.all_complexes"]], "all_entities() (pypath.core.annot.celltalkdb method)": [[22, "pypath.core.annot.Celltalkdb.all_entities"]], "all_mirnas() (pypath.core.annot.celltalkdb method)": [[22, "pypath.core.annot.Celltalkdb.all_mirnas"]], "all_proteins() (pypath.core.annot.celltalkdb method)": [[22, "pypath.core.annot.Celltalkdb.all_proteins"]], "all_refs() (pypath.core.annot.celltalkdb method)": [[22, "pypath.core.annot.Celltalkdb.all_refs"]], "annotate_complex() (pypath.core.annot.celltalkdb method)": [[22, "pypath.core.annot.Celltalkdb.annotate_complex"]], "browse() (pypath.core.annot.celltalkdb method)": [[22, "pypath.core.annot.Celltalkdb.browse"]], "complex_inference() (pypath.core.annot.celltalkdb method)": [[22, "pypath.core.annot.Celltalkdb.complex_inference"]], "coverage() (pypath.core.annot.celltalkdb method)": [[22, "pypath.core.annot.Celltalkdb.coverage"]], "curation_effort() (pypath.core.annot.celltalkdb method)": [[22, "pypath.core.annot.Celltalkdb.curation_effort"]], "get_names() (pypath.core.annot.celltalkdb method)": [[22, "pypath.core.annot.Celltalkdb.get_names"]], "get_reference_set() (pypath.core.annot.celltalkdb static method)": [[22, "pypath.core.annot.Celltalkdb.get_reference_set"]], "get_subset() (pypath.core.annot.celltalkdb method)": [[22, "pypath.core.annot.Celltalkdb.get_subset"]], "get_subset_bool_array() (pypath.core.annot.celltalkdb method)": [[22, "pypath.core.annot.Celltalkdb.get_subset_bool_array"]], "get_values() (pypath.core.annot.celltalkdb method)": [[22, "pypath.core.annot.Celltalkdb.get_values"]], "labels() (pypath.core.annot.celltalkdb method)": [[22, "pypath.core.annot.Celltalkdb.labels"]], "load() (pypath.core.annot.celltalkdb method)": [[22, "pypath.core.annot.Celltalkdb.load"]], "load_data() (pypath.core.annot.celltalkdb method)": [[22, "pypath.core.annot.Celltalkdb.load_data"]], "load_proteins() (pypath.core.annot.celltalkdb method)": [[22, "pypath.core.annot.Celltalkdb.load_proteins"]], "make_df() (pypath.core.annot.celltalkdb method)": [[22, "pypath.core.annot.Celltalkdb.make_df"]], "numof_entities() (pypath.core.annot.celltalkdb method)": [[22, "pypath.core.annot.Celltalkdb.numof_entities"]], "numof_records() (pypath.core.annot.celltalkdb method)": [[22, "pypath.core.annot.Celltalkdb.numof_records"]], "numof_references() (pypath.core.annot.celltalkdb method)": [[22, "pypath.core.annot.Celltalkdb.numof_references"]], "process() (pypath.core.annot.celltalkdb method)": [[22, "pypath.core.annot.Celltalkdb.process"]], "reload() (pypath.core.annot.celltalkdb method)": [[22, "pypath.core.annot.Celltalkdb.reload"]], "select() (pypath.core.annot.celltalkdb method)": [[22, "pypath.core.annot.Celltalkdb.select"]], "set_method() (pypath.core.annot.celltalkdb method)": [[22, "pypath.core.annot.Celltalkdb.set_method"]], "set_reference_set() (pypath.core.annot.celltalkdb method)": [[22, "pypath.core.annot.Celltalkdb.set_reference_set"]], "show() (pypath.core.annot.celltalkdb method)": [[22, "pypath.core.annot.Celltalkdb.show"]], "subset_intersection() (pypath.core.annot.celltalkdb method)": [[22, "pypath.core.annot.Celltalkdb.subset_intersection"]], "to_array() (pypath.core.annot.celltalkdb method)": [[22, "pypath.core.annot.Celltalkdb.to_array"]], "to_bool_array() (pypath.core.annot.celltalkdb method)": [[22, "pypath.core.annot.Celltalkdb.to_bool_array"]], "to_set() (pypath.core.annot.celltalkdb method)": [[22, "pypath.core.annot.Celltalkdb.to_set"]], "celltypist (class in pypath.core.annot)": [[23, "pypath.core.annot.Celltypist"]], "__init__() (pypath.core.annot.celltypist method)": [[23, "pypath.core.annot.Celltypist.__init__"]], "add_complexes_by_inference() (pypath.core.annot.celltypist method)": [[23, "pypath.core.annot.Celltypist.add_complexes_by_inference"]], "all_complexes() (pypath.core.annot.celltypist method)": [[23, "pypath.core.annot.Celltypist.all_complexes"]], "all_entities() (pypath.core.annot.celltypist method)": [[23, "pypath.core.annot.Celltypist.all_entities"]], "all_mirnas() (pypath.core.annot.celltypist method)": [[23, "pypath.core.annot.Celltypist.all_mirnas"]], "all_proteins() (pypath.core.annot.celltypist method)": [[23, "pypath.core.annot.Celltypist.all_proteins"]], "all_refs() (pypath.core.annot.celltypist method)": [[23, "pypath.core.annot.Celltypist.all_refs"]], "annotate_complex() (pypath.core.annot.celltypist method)": [[23, "pypath.core.annot.Celltypist.annotate_complex"]], "browse() (pypath.core.annot.celltypist method)": [[23, "pypath.core.annot.Celltypist.browse"]], "complex_inference() (pypath.core.annot.celltypist method)": [[23, "pypath.core.annot.Celltypist.complex_inference"]], "coverage() (pypath.core.annot.celltypist method)": [[23, "pypath.core.annot.Celltypist.coverage"]], "curation_effort() (pypath.core.annot.celltypist method)": [[23, "pypath.core.annot.Celltypist.curation_effort"]], "get_names() (pypath.core.annot.celltypist method)": [[23, "pypath.core.annot.Celltypist.get_names"]], "get_reference_set() (pypath.core.annot.celltypist static method)": [[23, "pypath.core.annot.Celltypist.get_reference_set"]], "get_subset() (pypath.core.annot.celltypist method)": [[23, "pypath.core.annot.Celltypist.get_subset"]], "get_subset_bool_array() (pypath.core.annot.celltypist method)": [[23, "pypath.core.annot.Celltypist.get_subset_bool_array"]], "get_values() (pypath.core.annot.celltypist method)": [[23, "pypath.core.annot.Celltypist.get_values"]], "labels() (pypath.core.annot.celltypist method)": [[23, "pypath.core.annot.Celltypist.labels"]], "load() (pypath.core.annot.celltypist method)": [[23, "pypath.core.annot.Celltypist.load"]], "load_data() (pypath.core.annot.celltypist method)": [[23, "pypath.core.annot.Celltypist.load_data"]], "load_proteins() (pypath.core.annot.celltypist method)": [[23, "pypath.core.annot.Celltypist.load_proteins"]], "make_df() (pypath.core.annot.celltypist method)": [[23, "pypath.core.annot.Celltypist.make_df"]], "numof_entities() (pypath.core.annot.celltypist method)": [[23, "pypath.core.annot.Celltypist.numof_entities"]], "numof_records() (pypath.core.annot.celltypist method)": [[23, "pypath.core.annot.Celltypist.numof_records"]], "numof_references() (pypath.core.annot.celltypist method)": [[23, "pypath.core.annot.Celltypist.numof_references"]], "process() (pypath.core.annot.celltypist method)": [[23, "pypath.core.annot.Celltypist.process"]], "reload() (pypath.core.annot.celltypist method)": [[23, "pypath.core.annot.Celltypist.reload"]], "select() (pypath.core.annot.celltypist method)": [[23, "pypath.core.annot.Celltypist.select"]], "set_method() (pypath.core.annot.celltypist method)": [[23, "pypath.core.annot.Celltypist.set_method"]], "set_reference_set() (pypath.core.annot.celltypist method)": [[23, "pypath.core.annot.Celltypist.set_reference_set"]], "show() (pypath.core.annot.celltypist method)": [[23, "pypath.core.annot.Celltypist.show"]], "subset_intersection() (pypath.core.annot.celltypist method)": [[23, "pypath.core.annot.Celltypist.subset_intersection"]], "to_array() (pypath.core.annot.celltypist method)": [[23, "pypath.core.annot.Celltypist.to_array"]], "to_bool_array() (pypath.core.annot.celltypist method)": [[23, "pypath.core.annot.Celltypist.to_bool_array"]], "to_set() (pypath.core.annot.celltypist method)": [[23, "pypath.core.annot.Celltypist.to_set"]], "comppi (class in pypath.core.annot)": [[24, "pypath.core.annot.Comppi"]], "__init__() (pypath.core.annot.comppi method)": [[24, "pypath.core.annot.Comppi.__init__"]], "add_complexes_by_inference() (pypath.core.annot.comppi method)": [[24, "pypath.core.annot.Comppi.add_complexes_by_inference"]], "all_complexes() (pypath.core.annot.comppi method)": [[24, "pypath.core.annot.Comppi.all_complexes"]], "all_entities() (pypath.core.annot.comppi method)": [[24, "pypath.core.annot.Comppi.all_entities"]], "all_mirnas() (pypath.core.annot.comppi method)": [[24, "pypath.core.annot.Comppi.all_mirnas"]], "all_proteins() (pypath.core.annot.comppi method)": [[24, "pypath.core.annot.Comppi.all_proteins"]], "all_refs() (pypath.core.annot.comppi method)": [[24, "pypath.core.annot.Comppi.all_refs"]], "annotate_complex() (pypath.core.annot.comppi method)": [[24, "pypath.core.annot.Comppi.annotate_complex"]], "browse() (pypath.core.annot.comppi method)": [[24, "pypath.core.annot.Comppi.browse"]], "complex_inference() (pypath.core.annot.comppi method)": [[24, "pypath.core.annot.Comppi.complex_inference"]], "coverage() (pypath.core.annot.comppi method)": [[24, "pypath.core.annot.Comppi.coverage"]], "curation_effort() (pypath.core.annot.comppi method)": [[24, "pypath.core.annot.Comppi.curation_effort"]], "get_names() (pypath.core.annot.comppi method)": [[24, "pypath.core.annot.Comppi.get_names"]], "get_reference_set() (pypath.core.annot.comppi static method)": [[24, "pypath.core.annot.Comppi.get_reference_set"]], "get_subset() (pypath.core.annot.comppi method)": [[24, "pypath.core.annot.Comppi.get_subset"]], "get_subset_bool_array() (pypath.core.annot.comppi method)": [[24, "pypath.core.annot.Comppi.get_subset_bool_array"]], "get_values() (pypath.core.annot.comppi method)": [[24, "pypath.core.annot.Comppi.get_values"]], "labels() (pypath.core.annot.comppi method)": [[24, "pypath.core.annot.Comppi.labels"]], "load() (pypath.core.annot.comppi method)": [[24, "pypath.core.annot.Comppi.load"]], "load_data() (pypath.core.annot.comppi method)": [[24, "pypath.core.annot.Comppi.load_data"]], "load_proteins() (pypath.core.annot.comppi method)": [[24, "pypath.core.annot.Comppi.load_proteins"]], "make_df() (pypath.core.annot.comppi method)": [[24, "pypath.core.annot.Comppi.make_df"]], "numof_entities() (pypath.core.annot.comppi method)": [[24, "pypath.core.annot.Comppi.numof_entities"]], "numof_records() (pypath.core.annot.comppi method)": [[24, "pypath.core.annot.Comppi.numof_records"]], "numof_references() (pypath.core.annot.comppi method)": [[24, "pypath.core.annot.Comppi.numof_references"]], "process() (pypath.core.annot.comppi method)": [[24, "pypath.core.annot.Comppi.process"]], "reload() (pypath.core.annot.comppi method)": [[24, "pypath.core.annot.Comppi.reload"]], "select() (pypath.core.annot.comppi method)": [[24, "pypath.core.annot.Comppi.select"]], "set_method() (pypath.core.annot.comppi method)": [[24, "pypath.core.annot.Comppi.set_method"]], "set_reference_set() (pypath.core.annot.comppi method)": [[24, "pypath.core.annot.Comppi.set_reference_set"]], "show() (pypath.core.annot.comppi method)": [[24, "pypath.core.annot.Comppi.show"]], "subset_intersection() (pypath.core.annot.comppi method)": [[24, "pypath.core.annot.Comppi.subset_intersection"]], "to_array() (pypath.core.annot.comppi method)": [[24, "pypath.core.annot.Comppi.to_array"]], "to_bool_array() (pypath.core.annot.comppi method)": [[24, "pypath.core.annot.Comppi.to_bool_array"]], "to_set() (pypath.core.annot.comppi method)": [[24, "pypath.core.annot.Comppi.to_set"]], "connectomedb (class in pypath.core.annot)": [[25, "pypath.core.annot.Connectomedb"]], "__init__() (pypath.core.annot.connectomedb method)": [[25, "pypath.core.annot.Connectomedb.__init__"]], "add_complexes_by_inference() (pypath.core.annot.connectomedb method)": [[25, "pypath.core.annot.Connectomedb.add_complexes_by_inference"]], "all_complexes() (pypath.core.annot.connectomedb method)": [[25, "pypath.core.annot.Connectomedb.all_complexes"]], "all_entities() (pypath.core.annot.connectomedb method)": [[25, "pypath.core.annot.Connectomedb.all_entities"]], "all_mirnas() (pypath.core.annot.connectomedb method)": [[25, "pypath.core.annot.Connectomedb.all_mirnas"]], "all_proteins() (pypath.core.annot.connectomedb method)": [[25, "pypath.core.annot.Connectomedb.all_proteins"]], "all_refs() (pypath.core.annot.connectomedb method)": [[25, "pypath.core.annot.Connectomedb.all_refs"]], "annotate_complex() (pypath.core.annot.connectomedb method)": [[25, "pypath.core.annot.Connectomedb.annotate_complex"]], "browse() (pypath.core.annot.connectomedb method)": [[25, "pypath.core.annot.Connectomedb.browse"]], "complex_inference() (pypath.core.annot.connectomedb method)": [[25, "pypath.core.annot.Connectomedb.complex_inference"]], "coverage() (pypath.core.annot.connectomedb method)": [[25, "pypath.core.annot.Connectomedb.coverage"]], "curation_effort() (pypath.core.annot.connectomedb method)": [[25, "pypath.core.annot.Connectomedb.curation_effort"]], "get_names() (pypath.core.annot.connectomedb method)": [[25, "pypath.core.annot.Connectomedb.get_names"]], "get_reference_set() (pypath.core.annot.connectomedb static method)": [[25, "pypath.core.annot.Connectomedb.get_reference_set"]], "get_subset() (pypath.core.annot.connectomedb method)": [[25, "pypath.core.annot.Connectomedb.get_subset"]], "get_subset_bool_array() (pypath.core.annot.connectomedb method)": [[25, "pypath.core.annot.Connectomedb.get_subset_bool_array"]], "get_values() (pypath.core.annot.connectomedb method)": [[25, "pypath.core.annot.Connectomedb.get_values"]], "labels() (pypath.core.annot.connectomedb method)": [[25, "pypath.core.annot.Connectomedb.labels"]], "load() (pypath.core.annot.connectomedb method)": [[25, "pypath.core.annot.Connectomedb.load"]], "load_data() (pypath.core.annot.connectomedb method)": [[25, "pypath.core.annot.Connectomedb.load_data"]], "load_proteins() (pypath.core.annot.connectomedb method)": [[25, "pypath.core.annot.Connectomedb.load_proteins"]], "make_df() (pypath.core.annot.connectomedb method)": [[25, "pypath.core.annot.Connectomedb.make_df"]], "numof_entities() (pypath.core.annot.connectomedb method)": [[25, "pypath.core.annot.Connectomedb.numof_entities"]], "numof_records() (pypath.core.annot.connectomedb method)": [[25, "pypath.core.annot.Connectomedb.numof_records"]], "numof_references() (pypath.core.annot.connectomedb method)": [[25, "pypath.core.annot.Connectomedb.numof_references"]], "process() (pypath.core.annot.connectomedb method)": [[25, "pypath.core.annot.Connectomedb.process"]], "reload() (pypath.core.annot.connectomedb method)": [[25, "pypath.core.annot.Connectomedb.reload"]], "select() (pypath.core.annot.connectomedb method)": [[25, "pypath.core.annot.Connectomedb.select"]], "set_method() (pypath.core.annot.connectomedb method)": [[25, "pypath.core.annot.Connectomedb.set_method"]], "set_reference_set() (pypath.core.annot.connectomedb method)": [[25, "pypath.core.annot.Connectomedb.set_reference_set"]], "show() (pypath.core.annot.connectomedb method)": [[25, "pypath.core.annot.Connectomedb.show"]], "subset_intersection() (pypath.core.annot.connectomedb method)": [[25, "pypath.core.annot.Connectomedb.subset_intersection"]], "to_array() (pypath.core.annot.connectomedb method)": [[25, "pypath.core.annot.Connectomedb.to_array"]], "to_bool_array() (pypath.core.annot.connectomedb method)": [[25, "pypath.core.annot.Connectomedb.to_bool_array"]], "to_set() (pypath.core.annot.connectomedb method)": [[25, "pypath.core.annot.Connectomedb.to_set"]], "corum (class in pypath.core.annot)": [[26, "pypath.core.annot.Corum"]], "__init__() (pypath.core.annot.corum method)": [[26, "pypath.core.annot.Corum.__init__"]], "add_complexes_by_inference() (pypath.core.annot.corum method)": [[26, "pypath.core.annot.Corum.add_complexes_by_inference"]], "all_complexes() (pypath.core.annot.corum method)": [[26, "pypath.core.annot.Corum.all_complexes"]], "all_entities() (pypath.core.annot.corum method)": [[26, "pypath.core.annot.Corum.all_entities"]], "all_mirnas() (pypath.core.annot.corum method)": [[26, "pypath.core.annot.Corum.all_mirnas"]], "all_proteins() (pypath.core.annot.corum method)": [[26, "pypath.core.annot.Corum.all_proteins"]], "all_refs() (pypath.core.annot.corum method)": [[26, "pypath.core.annot.Corum.all_refs"]], "annotate_complex() (pypath.core.annot.corum method)": [[26, "pypath.core.annot.Corum.annotate_complex"]], "browse() (pypath.core.annot.corum method)": [[26, "pypath.core.annot.Corum.browse"]], "complex_inference() (pypath.core.annot.corum method)": [[26, "pypath.core.annot.Corum.complex_inference"]], "coverage() (pypath.core.annot.corum method)": [[26, "pypath.core.annot.Corum.coverage"]], "curation_effort() (pypath.core.annot.corum method)": [[26, "pypath.core.annot.Corum.curation_effort"]], "get_names() (pypath.core.annot.corum method)": [[26, "pypath.core.annot.Corum.get_names"]], "get_reference_set() (pypath.core.annot.corum static method)": [[26, "pypath.core.annot.Corum.get_reference_set"]], "get_subset() (pypath.core.annot.corum method)": [[26, "pypath.core.annot.Corum.get_subset"]], "get_subset_bool_array() (pypath.core.annot.corum method)": [[26, "pypath.core.annot.Corum.get_subset_bool_array"]], "get_values() (pypath.core.annot.corum method)": [[26, "pypath.core.annot.Corum.get_values"]], "labels() (pypath.core.annot.corum method)": [[26, "pypath.core.annot.Corum.labels"]], "load() (pypath.core.annot.corum method)": [[26, "pypath.core.annot.Corum.load"]], "load_data() (pypath.core.annot.corum method)": [[26, "pypath.core.annot.Corum.load_data"]], "load_proteins() (pypath.core.annot.corum method)": [[26, "pypath.core.annot.Corum.load_proteins"]], "make_df() (pypath.core.annot.corum method)": [[26, "pypath.core.annot.Corum.make_df"]], "numof_entities() (pypath.core.annot.corum method)": [[26, "pypath.core.annot.Corum.numof_entities"]], "numof_records() (pypath.core.annot.corum method)": [[26, "pypath.core.annot.Corum.numof_records"]], "numof_references() (pypath.core.annot.corum method)": [[26, "pypath.core.annot.Corum.numof_references"]], "process() (pypath.core.annot.corum method)": [[26, "pypath.core.annot.Corum.process"]], "reload() (pypath.core.annot.corum method)": [[26, "pypath.core.annot.Corum.reload"]], "select() (pypath.core.annot.corum method)": [[26, "pypath.core.annot.Corum.select"]], "set_method() (pypath.core.annot.corum method)": [[26, "pypath.core.annot.Corum.set_method"]], "set_reference_set() (pypath.core.annot.corum method)": [[26, "pypath.core.annot.Corum.set_reference_set"]], "show() (pypath.core.annot.corum method)": [[26, "pypath.core.annot.Corum.show"]], "subset_intersection() (pypath.core.annot.corum method)": [[26, "pypath.core.annot.Corum.subset_intersection"]], "to_array() (pypath.core.annot.corum method)": [[26, "pypath.core.annot.Corum.to_array"]], "to_bool_array() (pypath.core.annot.corum method)": [[26, "pypath.core.annot.Corum.to_bool_array"]], "to_set() (pypath.core.annot.corum method)": [[26, "pypath.core.annot.Corum.to_set"]], "corumfuncat (class in pypath.core.annot)": [[27, "pypath.core.annot.CorumFuncat"]], "__init__() (pypath.core.annot.corumfuncat method)": [[27, "pypath.core.annot.CorumFuncat.__init__"]], "add_complexes_by_inference() (pypath.core.annot.corumfuncat method)": [[27, "pypath.core.annot.CorumFuncat.add_complexes_by_inference"]], "all_complexes() (pypath.core.annot.corumfuncat method)": [[27, "pypath.core.annot.CorumFuncat.all_complexes"]], "all_entities() (pypath.core.annot.corumfuncat method)": [[27, "pypath.core.annot.CorumFuncat.all_entities"]], "all_mirnas() (pypath.core.annot.corumfuncat method)": [[27, "pypath.core.annot.CorumFuncat.all_mirnas"]], "all_proteins() (pypath.core.annot.corumfuncat method)": [[27, "pypath.core.annot.CorumFuncat.all_proteins"]], "all_refs() (pypath.core.annot.corumfuncat method)": [[27, "pypath.core.annot.CorumFuncat.all_refs"]], "annotate_complex() (pypath.core.annot.corumfuncat method)": [[27, "pypath.core.annot.CorumFuncat.annotate_complex"]], "browse() (pypath.core.annot.corumfuncat method)": [[27, "pypath.core.annot.CorumFuncat.browse"]], "complex_inference() (pypath.core.annot.corumfuncat method)": [[27, "pypath.core.annot.CorumFuncat.complex_inference"]], "coverage() (pypath.core.annot.corumfuncat method)": [[27, "pypath.core.annot.CorumFuncat.coverage"]], "curation_effort() (pypath.core.annot.corumfuncat method)": [[27, "pypath.core.annot.CorumFuncat.curation_effort"]], "get_names() (pypath.core.annot.corumfuncat method)": [[27, "pypath.core.annot.CorumFuncat.get_names"]], "get_reference_set() (pypath.core.annot.corumfuncat static method)": [[27, "pypath.core.annot.CorumFuncat.get_reference_set"]], "get_subset() (pypath.core.annot.corumfuncat method)": [[27, "pypath.core.annot.CorumFuncat.get_subset"]], "get_subset_bool_array() (pypath.core.annot.corumfuncat method)": [[27, "pypath.core.annot.CorumFuncat.get_subset_bool_array"]], "get_values() (pypath.core.annot.corumfuncat method)": [[27, "pypath.core.annot.CorumFuncat.get_values"]], "labels() (pypath.core.annot.corumfuncat method)": [[27, "pypath.core.annot.CorumFuncat.labels"]], "load() (pypath.core.annot.corumfuncat method)": [[27, "pypath.core.annot.CorumFuncat.load"]], "load_data() (pypath.core.annot.corumfuncat method)": [[27, "pypath.core.annot.CorumFuncat.load_data"]], "load_proteins() (pypath.core.annot.corumfuncat method)": [[27, "pypath.core.annot.CorumFuncat.load_proteins"]], "make_df() (pypath.core.annot.corumfuncat method)": [[27, "pypath.core.annot.CorumFuncat.make_df"]], "numof_entities() (pypath.core.annot.corumfuncat method)": [[27, "pypath.core.annot.CorumFuncat.numof_entities"]], "numof_records() (pypath.core.annot.corumfuncat method)": [[27, "pypath.core.annot.CorumFuncat.numof_records"]], "numof_references() (pypath.core.annot.corumfuncat method)": [[27, "pypath.core.annot.CorumFuncat.numof_references"]], "process() (pypath.core.annot.corumfuncat method)": [[27, "pypath.core.annot.CorumFuncat.process"]], "reload() (pypath.core.annot.corumfuncat method)": [[27, "pypath.core.annot.CorumFuncat.reload"]], "select() (pypath.core.annot.corumfuncat method)": [[27, "pypath.core.annot.CorumFuncat.select"]], "set_method() (pypath.core.annot.corumfuncat method)": [[27, "pypath.core.annot.CorumFuncat.set_method"]], "set_reference_set() (pypath.core.annot.corumfuncat method)": [[27, "pypath.core.annot.CorumFuncat.set_reference_set"]], "show() (pypath.core.annot.corumfuncat method)": [[27, "pypath.core.annot.CorumFuncat.show"]], "subset_intersection() (pypath.core.annot.corumfuncat method)": [[27, "pypath.core.annot.CorumFuncat.subset_intersection"]], "to_array() (pypath.core.annot.corumfuncat method)": [[27, "pypath.core.annot.CorumFuncat.to_array"]], "to_bool_array() (pypath.core.annot.corumfuncat method)": [[27, "pypath.core.annot.CorumFuncat.to_bool_array"]], "to_set() (pypath.core.annot.corumfuncat method)": [[27, "pypath.core.annot.CorumFuncat.to_set"]], "corumgo (class in pypath.core.annot)": [[28, "pypath.core.annot.CorumGO"]], "__init__() (pypath.core.annot.corumgo method)": [[28, "pypath.core.annot.CorumGO.__init__"]], "add_complexes_by_inference() (pypath.core.annot.corumgo method)": [[28, "pypath.core.annot.CorumGO.add_complexes_by_inference"]], "all_complexes() (pypath.core.annot.corumgo method)": [[28, "pypath.core.annot.CorumGO.all_complexes"]], "all_entities() (pypath.core.annot.corumgo method)": [[28, "pypath.core.annot.CorumGO.all_entities"]], "all_mirnas() (pypath.core.annot.corumgo method)": [[28, "pypath.core.annot.CorumGO.all_mirnas"]], "all_proteins() (pypath.core.annot.corumgo method)": [[28, "pypath.core.annot.CorumGO.all_proteins"]], "all_refs() (pypath.core.annot.corumgo method)": [[28, "pypath.core.annot.CorumGO.all_refs"]], "annotate_complex() (pypath.core.annot.corumgo method)": [[28, "pypath.core.annot.CorumGO.annotate_complex"]], "browse() (pypath.core.annot.corumgo method)": [[28, "pypath.core.annot.CorumGO.browse"]], "complex_inference() (pypath.core.annot.corumgo method)": [[28, "pypath.core.annot.CorumGO.complex_inference"]], "coverage() (pypath.core.annot.corumgo method)": [[28, "pypath.core.annot.CorumGO.coverage"]], "curation_effort() (pypath.core.annot.corumgo method)": [[28, "pypath.core.annot.CorumGO.curation_effort"]], "get_names() (pypath.core.annot.corumgo method)": [[28, "pypath.core.annot.CorumGO.get_names"]], "get_reference_set() (pypath.core.annot.corumgo static method)": [[28, "pypath.core.annot.CorumGO.get_reference_set"]], "get_subset() (pypath.core.annot.corumgo method)": [[28, "pypath.core.annot.CorumGO.get_subset"]], "get_subset_bool_array() (pypath.core.annot.corumgo method)": [[28, "pypath.core.annot.CorumGO.get_subset_bool_array"]], "get_values() (pypath.core.annot.corumgo method)": [[28, "pypath.core.annot.CorumGO.get_values"]], "labels() (pypath.core.annot.corumgo method)": [[28, "pypath.core.annot.CorumGO.labels"]], "load() (pypath.core.annot.corumgo method)": [[28, "pypath.core.annot.CorumGO.load"]], "load_data() (pypath.core.annot.corumgo method)": [[28, "pypath.core.annot.CorumGO.load_data"]], "load_proteins() (pypath.core.annot.corumgo method)": [[28, "pypath.core.annot.CorumGO.load_proteins"]], "make_df() (pypath.core.annot.corumgo method)": [[28, "pypath.core.annot.CorumGO.make_df"]], "numof_entities() (pypath.core.annot.corumgo method)": [[28, "pypath.core.annot.CorumGO.numof_entities"]], "numof_records() (pypath.core.annot.corumgo method)": [[28, "pypath.core.annot.CorumGO.numof_records"]], "numof_references() (pypath.core.annot.corumgo method)": [[28, "pypath.core.annot.CorumGO.numof_references"]], "process() (pypath.core.annot.corumgo method)": [[28, "pypath.core.annot.CorumGO.process"]], "reload() (pypath.core.annot.corumgo method)": [[28, "pypath.core.annot.CorumGO.reload"]], "select() (pypath.core.annot.corumgo method)": [[28, "pypath.core.annot.CorumGO.select"]], "set_method() (pypath.core.annot.corumgo method)": [[28, "pypath.core.annot.CorumGO.set_method"]], "set_reference_set() (pypath.core.annot.corumgo method)": [[28, "pypath.core.annot.CorumGO.set_reference_set"]], "show() (pypath.core.annot.corumgo method)": [[28, "pypath.core.annot.CorumGO.show"]], "subset_intersection() (pypath.core.annot.corumgo method)": [[28, "pypath.core.annot.CorumGO.subset_intersection"]], "to_array() (pypath.core.annot.corumgo method)": [[28, "pypath.core.annot.CorumGO.to_array"]], "to_bool_array() (pypath.core.annot.corumgo method)": [[28, "pypath.core.annot.CorumGO.to_bool_array"]], "to_set() (pypath.core.annot.corumgo method)": [[28, "pypath.core.annot.CorumGO.to_set"]], "cpad (class in pypath.core.annot)": [[29, "pypath.core.annot.Cpad"]], "__init__() (pypath.core.annot.cpad method)": [[29, "pypath.core.annot.Cpad.__init__"]], "add_complexes_by_inference() (pypath.core.annot.cpad method)": [[29, "pypath.core.annot.Cpad.add_complexes_by_inference"]], "all_complexes() (pypath.core.annot.cpad method)": [[29, "pypath.core.annot.Cpad.all_complexes"]], "all_entities() (pypath.core.annot.cpad method)": [[29, "pypath.core.annot.Cpad.all_entities"]], "all_mirnas() (pypath.core.annot.cpad method)": [[29, "pypath.core.annot.Cpad.all_mirnas"]], "all_proteins() (pypath.core.annot.cpad method)": [[29, "pypath.core.annot.Cpad.all_proteins"]], "all_refs() (pypath.core.annot.cpad method)": [[29, "pypath.core.annot.Cpad.all_refs"]], "annotate_complex() (pypath.core.annot.cpad method)": [[29, "pypath.core.annot.Cpad.annotate_complex"]], "browse() (pypath.core.annot.cpad method)": [[29, "pypath.core.annot.Cpad.browse"]], "complex_inference() (pypath.core.annot.cpad method)": [[29, "pypath.core.annot.Cpad.complex_inference"]], "coverage() (pypath.core.annot.cpad method)": [[29, "pypath.core.annot.Cpad.coverage"]], "curation_effort() (pypath.core.annot.cpad method)": [[29, "pypath.core.annot.Cpad.curation_effort"]], "get_names() (pypath.core.annot.cpad method)": [[29, "pypath.core.annot.Cpad.get_names"]], "get_reference_set() (pypath.core.annot.cpad static method)": [[29, "pypath.core.annot.Cpad.get_reference_set"]], "get_subset() (pypath.core.annot.cpad method)": [[29, "pypath.core.annot.Cpad.get_subset"]], "get_subset_bool_array() (pypath.core.annot.cpad method)": [[29, "pypath.core.annot.Cpad.get_subset_bool_array"]], "get_values() (pypath.core.annot.cpad method)": [[29, "pypath.core.annot.Cpad.get_values"]], "labels() (pypath.core.annot.cpad method)": [[29, "pypath.core.annot.Cpad.labels"]], "load() (pypath.core.annot.cpad method)": [[29, "pypath.core.annot.Cpad.load"]], "load_data() (pypath.core.annot.cpad method)": [[29, "pypath.core.annot.Cpad.load_data"]], "load_proteins() (pypath.core.annot.cpad method)": [[29, "pypath.core.annot.Cpad.load_proteins"]], "make_df() (pypath.core.annot.cpad method)": [[29, "pypath.core.annot.Cpad.make_df"]], "numof_entities() (pypath.core.annot.cpad method)": [[29, "pypath.core.annot.Cpad.numof_entities"]], "numof_records() (pypath.core.annot.cpad method)": [[29, "pypath.core.annot.Cpad.numof_records"]], "numof_references() (pypath.core.annot.cpad method)": [[29, "pypath.core.annot.Cpad.numof_references"]], "process() (pypath.core.annot.cpad method)": [[29, "pypath.core.annot.Cpad.process"]], "reload() (pypath.core.annot.cpad method)": [[29, "pypath.core.annot.Cpad.reload"]], "select() (pypath.core.annot.cpad method)": [[29, "pypath.core.annot.Cpad.select"]], "set_method() (pypath.core.annot.cpad method)": [[29, "pypath.core.annot.Cpad.set_method"]], "set_reference_set() (pypath.core.annot.cpad method)": [[29, "pypath.core.annot.Cpad.set_reference_set"]], "show() (pypath.core.annot.cpad method)": [[29, "pypath.core.annot.Cpad.show"]], "subset_intersection() (pypath.core.annot.cpad method)": [[29, "pypath.core.annot.Cpad.subset_intersection"]], "to_array() (pypath.core.annot.cpad method)": [[29, "pypath.core.annot.Cpad.to_array"]], "to_bool_array() (pypath.core.annot.cpad method)": [[29, "pypath.core.annot.Cpad.to_bool_array"]], "to_set() (pypath.core.annot.cpad method)": [[29, "pypath.core.annot.Cpad.to_set"]], "customannotation (class in pypath.core.annot)": [[30, "pypath.core.annot.CustomAnnotation"]], "__init__() (pypath.core.annot.customannotation method)": [[30, "pypath.core.annot.CustomAnnotation.__init__"]], "browse() (pypath.core.annot.customannotation method)": [[30, "pypath.core.annot.CustomAnnotation.browse"]], "class_to_class_connections() (pypath.core.annot.customannotation method)": [[30, "pypath.core.annot.CustomAnnotation.class_to_class_connections"]], "classes_by_entity() (pypath.core.annot.customannotation method)": [[30, "pypath.core.annot.CustomAnnotation.classes_by_entity"]], "counts() (pypath.core.annot.customannotation method)": [[30, "pypath.core.annot.CustomAnnotation.counts"]], "counts_by_class() (pypath.core.annot.customannotation method)": [[30, "pypath.core.annot.CustomAnnotation.counts_by_class"]], "create_class() (pypath.core.annot.customannotation method)": [[30, "pypath.core.annot.CustomAnnotation.create_class"]], "degree_inter_class_network() (pypath.core.annot.customannotation method)": [[30, "pypath.core.annot.CustomAnnotation.degree_inter_class_network"]], "filter() (pypath.core.annot.customannotation method)": [[30, "pypath.core.annot.CustomAnnotation.filter"]], "filter_classes() (pypath.core.annot.customannotation static method)": [[30, "pypath.core.annot.CustomAnnotation.filter_classes"]], "filter_interclass_network() (pypath.core.annot.customannotation method)": [[30, "pypath.core.annot.CustomAnnotation.filter_interclass_network"]], "get_class() (pypath.core.annot.customannotation method)": [[30, "pypath.core.annot.CustomAnnotation.get_class"]], "get_df() (pypath.core.annot.customannotation method)": [[30, "pypath.core.annot.CustomAnnotation.get_df"]], "get_interclass_network_df() (pypath.core.annot.customannotation method)": [[30, "pypath.core.annot.CustomAnnotation.get_interclass_network_df"]], "get_parents() (pypath.core.annot.customannotation method)": [[30, "pypath.core.annot.CustomAnnotation.get_parents"]], "get_resource() (pypath.core.annot.customannotation method)": [[30, "pypath.core.annot.CustomAnnotation.get_resource"]], "get_resources() (pypath.core.annot.customannotation method)": [[30, "pypath.core.annot.CustomAnnotation.get_resources"]], "labels() (pypath.core.annot.customannotation method)": [[30, "pypath.core.annot.CustomAnnotation.labels"]], "make_df() (pypath.core.annot.customannotation method)": [[30, "pypath.core.annot.CustomAnnotation.make_df"]], "network_df() (pypath.core.annot.customannotation method)": [[30, "pypath.core.annot.CustomAnnotation.network_df"]], "populate_classes() (pypath.core.annot.customannotation method)": [[30, "pypath.core.annot.CustomAnnotation.populate_classes"]], "populate_scores() (pypath.core.annot.customannotation method)": [[30, "pypath.core.annot.CustomAnnotation.populate_scores"]], "process_annot() (pypath.core.annot.customannotation method)": [[30, "pypath.core.annot.CustomAnnotation.process_annot"]], "quality_check_table() (pypath.core.annot.customannotation method)": [[30, "pypath.core.annot.CustomAnnotation.quality_check_table"]], "register_network() (pypath.core.annot.customannotation method)": [[30, "pypath.core.annot.CustomAnnotation.register_network"]], "reload() (pypath.core.annot.customannotation method)": [[30, "pypath.core.annot.CustomAnnotation.reload"]], "resources_in_category() (pypath.core.annot.customannotation method)": [[30, "pypath.core.annot.CustomAnnotation.resources_in_category"]], "select() (pypath.core.annot.customannotation method)": [[30, "pypath.core.annot.CustomAnnotation.select"]], "set_interclass_network_df() (pypath.core.annot.customannotation method)": [[30, "pypath.core.annot.CustomAnnotation.set_interclass_network_df"]], "show() (pypath.core.annot.customannotation method)": [[30, "pypath.core.annot.CustomAnnotation.show"]], "update_parents() (pypath.core.annot.customannotation method)": [[30, "pypath.core.annot.CustomAnnotation.update_parents"]], "cytosig (class in pypath.core.annot)": [[31, "pypath.core.annot.Cytosig"]], "__init__() (pypath.core.annot.cytosig method)": [[31, "pypath.core.annot.Cytosig.__init__"]], "add_complexes_by_inference() (pypath.core.annot.cytosig method)": [[31, "pypath.core.annot.Cytosig.add_complexes_by_inference"]], "all_complexes() (pypath.core.annot.cytosig method)": [[31, "pypath.core.annot.Cytosig.all_complexes"]], "all_entities() (pypath.core.annot.cytosig method)": [[31, "pypath.core.annot.Cytosig.all_entities"]], "all_mirnas() (pypath.core.annot.cytosig method)": [[31, "pypath.core.annot.Cytosig.all_mirnas"]], "all_proteins() (pypath.core.annot.cytosig method)": [[31, "pypath.core.annot.Cytosig.all_proteins"]], "all_refs() (pypath.core.annot.cytosig method)": [[31, "pypath.core.annot.Cytosig.all_refs"]], "annotate_complex() (pypath.core.annot.cytosig method)": [[31, "pypath.core.annot.Cytosig.annotate_complex"]], "browse() (pypath.core.annot.cytosig method)": [[31, "pypath.core.annot.Cytosig.browse"]], "complex_inference() (pypath.core.annot.cytosig method)": [[31, "pypath.core.annot.Cytosig.complex_inference"]], "coverage() (pypath.core.annot.cytosig method)": [[31, "pypath.core.annot.Cytosig.coverage"]], "curation_effort() (pypath.core.annot.cytosig method)": [[31, "pypath.core.annot.Cytosig.curation_effort"]], "get_names() (pypath.core.annot.cytosig method)": [[31, "pypath.core.annot.Cytosig.get_names"]], "get_reference_set() (pypath.core.annot.cytosig static method)": [[31, "pypath.core.annot.Cytosig.get_reference_set"]], "get_subset() (pypath.core.annot.cytosig method)": [[31, "pypath.core.annot.Cytosig.get_subset"]], "get_subset_bool_array() (pypath.core.annot.cytosig method)": [[31, "pypath.core.annot.Cytosig.get_subset_bool_array"]], "get_values() (pypath.core.annot.cytosig method)": [[31, "pypath.core.annot.Cytosig.get_values"]], "labels() (pypath.core.annot.cytosig method)": [[31, "pypath.core.annot.Cytosig.labels"]], "load() (pypath.core.annot.cytosig method)": [[31, "pypath.core.annot.Cytosig.load"]], "load_data() (pypath.core.annot.cytosig method)": [[31, "pypath.core.annot.Cytosig.load_data"]], "load_proteins() (pypath.core.annot.cytosig method)": [[31, "pypath.core.annot.Cytosig.load_proteins"]], "make_df() (pypath.core.annot.cytosig method)": [[31, "pypath.core.annot.Cytosig.make_df"]], "numof_entities() (pypath.core.annot.cytosig method)": [[31, "pypath.core.annot.Cytosig.numof_entities"]], "numof_records() (pypath.core.annot.cytosig method)": [[31, "pypath.core.annot.Cytosig.numof_records"]], "numof_references() (pypath.core.annot.cytosig method)": [[31, "pypath.core.annot.Cytosig.numof_references"]], "process() (pypath.core.annot.cytosig method)": [[31, "pypath.core.annot.Cytosig.process"]], "reload() (pypath.core.annot.cytosig method)": [[31, "pypath.core.annot.Cytosig.reload"]], "select() (pypath.core.annot.cytosig method)": [[31, "pypath.core.annot.Cytosig.select"]], "set_method() (pypath.core.annot.cytosig method)": [[31, "pypath.core.annot.Cytosig.set_method"]], "set_reference_set() (pypath.core.annot.cytosig method)": [[31, "pypath.core.annot.Cytosig.set_reference_set"]], "show() (pypath.core.annot.cytosig method)": [[31, "pypath.core.annot.Cytosig.show"]], "subset_intersection() (pypath.core.annot.cytosig method)": [[31, "pypath.core.annot.Cytosig.subset_intersection"]], "to_array() (pypath.core.annot.cytosig method)": [[31, "pypath.core.annot.Cytosig.to_array"]], "to_bool_array() (pypath.core.annot.cytosig method)": [[31, "pypath.core.annot.Cytosig.to_bool_array"]], "to_set() (pypath.core.annot.cytosig method)": [[31, "pypath.core.annot.Cytosig.to_set"]], "dgidb (class in pypath.core.annot)": [[32, "pypath.core.annot.Dgidb"]], "__init__() (pypath.core.annot.dgidb method)": [[32, "pypath.core.annot.Dgidb.__init__"]], "add_complexes_by_inference() (pypath.core.annot.dgidb method)": [[32, "pypath.core.annot.Dgidb.add_complexes_by_inference"]], "all_complexes() (pypath.core.annot.dgidb method)": [[32, "pypath.core.annot.Dgidb.all_complexes"]], "all_entities() (pypath.core.annot.dgidb method)": [[32, "pypath.core.annot.Dgidb.all_entities"]], "all_mirnas() (pypath.core.annot.dgidb method)": [[32, "pypath.core.annot.Dgidb.all_mirnas"]], "all_proteins() (pypath.core.annot.dgidb method)": [[32, "pypath.core.annot.Dgidb.all_proteins"]], "all_refs() (pypath.core.annot.dgidb method)": [[32, "pypath.core.annot.Dgidb.all_refs"]], "annotate_complex() (pypath.core.annot.dgidb method)": [[32, "pypath.core.annot.Dgidb.annotate_complex"]], "browse() (pypath.core.annot.dgidb method)": [[32, "pypath.core.annot.Dgidb.browse"]], "complex_inference() (pypath.core.annot.dgidb method)": [[32, "pypath.core.annot.Dgidb.complex_inference"]], "coverage() (pypath.core.annot.dgidb method)": [[32, "pypath.core.annot.Dgidb.coverage"]], "curation_effort() (pypath.core.annot.dgidb method)": [[32, "pypath.core.annot.Dgidb.curation_effort"]], "get_names() (pypath.core.annot.dgidb method)": [[32, "pypath.core.annot.Dgidb.get_names"]], "get_reference_set() (pypath.core.annot.dgidb static method)": [[32, "pypath.core.annot.Dgidb.get_reference_set"]], "get_subset() (pypath.core.annot.dgidb method)": [[32, "pypath.core.annot.Dgidb.get_subset"]], "get_subset_bool_array() (pypath.core.annot.dgidb method)": [[32, "pypath.core.annot.Dgidb.get_subset_bool_array"]], "get_values() (pypath.core.annot.dgidb method)": [[32, "pypath.core.annot.Dgidb.get_values"]], "labels() (pypath.core.annot.dgidb method)": [[32, "pypath.core.annot.Dgidb.labels"]], "load() (pypath.core.annot.dgidb method)": [[32, "pypath.core.annot.Dgidb.load"]], "load_data() (pypath.core.annot.dgidb method)": [[32, "pypath.core.annot.Dgidb.load_data"]], "load_proteins() (pypath.core.annot.dgidb method)": [[32, "pypath.core.annot.Dgidb.load_proteins"]], "make_df() (pypath.core.annot.dgidb method)": [[32, "pypath.core.annot.Dgidb.make_df"]], "numof_entities() (pypath.core.annot.dgidb method)": [[32, "pypath.core.annot.Dgidb.numof_entities"]], "numof_records() (pypath.core.annot.dgidb method)": [[32, "pypath.core.annot.Dgidb.numof_records"]], "numof_references() (pypath.core.annot.dgidb method)": [[32, "pypath.core.annot.Dgidb.numof_references"]], "process() (pypath.core.annot.dgidb method)": [[32, "pypath.core.annot.Dgidb.process"]], "reload() (pypath.core.annot.dgidb method)": [[32, "pypath.core.annot.Dgidb.reload"]], "select() (pypath.core.annot.dgidb method)": [[32, "pypath.core.annot.Dgidb.select"]], "set_method() (pypath.core.annot.dgidb method)": [[32, "pypath.core.annot.Dgidb.set_method"]], "set_reference_set() (pypath.core.annot.dgidb method)": [[32, "pypath.core.annot.Dgidb.set_reference_set"]], "show() (pypath.core.annot.dgidb method)": [[32, "pypath.core.annot.Dgidb.show"]], "subset_intersection() (pypath.core.annot.dgidb method)": [[32, "pypath.core.annot.Dgidb.subset_intersection"]], "to_array() (pypath.core.annot.dgidb method)": [[32, "pypath.core.annot.Dgidb.to_array"]], "to_bool_array() (pypath.core.annot.dgidb method)": [[32, "pypath.core.annot.Dgidb.to_bool_array"]], "to_set() (pypath.core.annot.dgidb method)": [[32, "pypath.core.annot.Dgidb.to_set"]], "disgenet (class in pypath.core.annot)": [[33, "pypath.core.annot.Disgenet"]], "__init__() (pypath.core.annot.disgenet method)": [[33, "pypath.core.annot.Disgenet.__init__"]], "add_complexes_by_inference() (pypath.core.annot.disgenet method)": [[33, "pypath.core.annot.Disgenet.add_complexes_by_inference"]], "all_complexes() (pypath.core.annot.disgenet method)": [[33, "pypath.core.annot.Disgenet.all_complexes"]], "all_entities() (pypath.core.annot.disgenet method)": [[33, "pypath.core.annot.Disgenet.all_entities"]], "all_mirnas() (pypath.core.annot.disgenet method)": [[33, "pypath.core.annot.Disgenet.all_mirnas"]], "all_proteins() (pypath.core.annot.disgenet method)": [[33, "pypath.core.annot.Disgenet.all_proteins"]], "all_refs() (pypath.core.annot.disgenet method)": [[33, "pypath.core.annot.Disgenet.all_refs"]], "annotate_complex() (pypath.core.annot.disgenet method)": [[33, "pypath.core.annot.Disgenet.annotate_complex"]], "browse() (pypath.core.annot.disgenet method)": [[33, "pypath.core.annot.Disgenet.browse"]], "complex_inference() (pypath.core.annot.disgenet method)": [[33, "pypath.core.annot.Disgenet.complex_inference"]], "coverage() (pypath.core.annot.disgenet method)": [[33, "pypath.core.annot.Disgenet.coverage"]], "curation_effort() (pypath.core.annot.disgenet method)": [[33, "pypath.core.annot.Disgenet.curation_effort"]], "get_names() (pypath.core.annot.disgenet method)": [[33, "pypath.core.annot.Disgenet.get_names"]], "get_reference_set() (pypath.core.annot.disgenet static method)": [[33, "pypath.core.annot.Disgenet.get_reference_set"]], "get_subset() (pypath.core.annot.disgenet method)": [[33, "pypath.core.annot.Disgenet.get_subset"]], "get_subset_bool_array() (pypath.core.annot.disgenet method)": [[33, "pypath.core.annot.Disgenet.get_subset_bool_array"]], "get_values() (pypath.core.annot.disgenet method)": [[33, "pypath.core.annot.Disgenet.get_values"]], "labels() (pypath.core.annot.disgenet method)": [[33, "pypath.core.annot.Disgenet.labels"]], "load() (pypath.core.annot.disgenet method)": [[33, "pypath.core.annot.Disgenet.load"]], "load_data() (pypath.core.annot.disgenet method)": [[33, "pypath.core.annot.Disgenet.load_data"]], "load_proteins() (pypath.core.annot.disgenet method)": [[33, "pypath.core.annot.Disgenet.load_proteins"]], "make_df() (pypath.core.annot.disgenet method)": [[33, "pypath.core.annot.Disgenet.make_df"]], "numof_entities() (pypath.core.annot.disgenet method)": [[33, "pypath.core.annot.Disgenet.numof_entities"]], "numof_records() (pypath.core.annot.disgenet method)": [[33, "pypath.core.annot.Disgenet.numof_records"]], "numof_references() (pypath.core.annot.disgenet method)": [[33, "pypath.core.annot.Disgenet.numof_references"]], "process() (pypath.core.annot.disgenet method)": [[33, "pypath.core.annot.Disgenet.process"]], "reload() (pypath.core.annot.disgenet method)": [[33, "pypath.core.annot.Disgenet.reload"]], "select() (pypath.core.annot.disgenet method)": [[33, "pypath.core.annot.Disgenet.select"]], "set_method() (pypath.core.annot.disgenet method)": [[33, "pypath.core.annot.Disgenet.set_method"]], "set_reference_set() (pypath.core.annot.disgenet method)": [[33, "pypath.core.annot.Disgenet.set_reference_set"]], "show() (pypath.core.annot.disgenet method)": [[33, "pypath.core.annot.Disgenet.show"]], "subset_intersection() (pypath.core.annot.disgenet method)": [[33, "pypath.core.annot.Disgenet.subset_intersection"]], "to_array() (pypath.core.annot.disgenet method)": [[33, "pypath.core.annot.Disgenet.to_array"]], "to_bool_array() (pypath.core.annot.disgenet method)": [[33, "pypath.core.annot.Disgenet.to_bool_array"]], "to_set() (pypath.core.annot.disgenet method)": [[33, "pypath.core.annot.Disgenet.to_set"]], "embrace (class in pypath.core.annot)": [[34, "pypath.core.annot.Embrace"]], "__init__() (pypath.core.annot.embrace method)": [[34, "pypath.core.annot.Embrace.__init__"]], "add_complexes_by_inference() (pypath.core.annot.embrace method)": [[34, "pypath.core.annot.Embrace.add_complexes_by_inference"]], "all_complexes() (pypath.core.annot.embrace method)": [[34, "pypath.core.annot.Embrace.all_complexes"]], "all_entities() (pypath.core.annot.embrace method)": [[34, "pypath.core.annot.Embrace.all_entities"]], "all_mirnas() (pypath.core.annot.embrace method)": [[34, "pypath.core.annot.Embrace.all_mirnas"]], "all_proteins() (pypath.core.annot.embrace method)": [[34, "pypath.core.annot.Embrace.all_proteins"]], "all_refs() (pypath.core.annot.embrace method)": [[34, "pypath.core.annot.Embrace.all_refs"]], "annotate_complex() (pypath.core.annot.embrace method)": [[34, "pypath.core.annot.Embrace.annotate_complex"]], "browse() (pypath.core.annot.embrace method)": [[34, "pypath.core.annot.Embrace.browse"]], "complex_inference() (pypath.core.annot.embrace method)": [[34, "pypath.core.annot.Embrace.complex_inference"]], "coverage() (pypath.core.annot.embrace method)": [[34, "pypath.core.annot.Embrace.coverage"]], "curation_effort() (pypath.core.annot.embrace method)": [[34, "pypath.core.annot.Embrace.curation_effort"]], "get_names() (pypath.core.annot.embrace method)": [[34, "pypath.core.annot.Embrace.get_names"]], "get_reference_set() (pypath.core.annot.embrace static method)": [[34, "pypath.core.annot.Embrace.get_reference_set"]], "get_subset() (pypath.core.annot.embrace method)": [[34, "pypath.core.annot.Embrace.get_subset"]], "get_subset_bool_array() (pypath.core.annot.embrace method)": [[34, "pypath.core.annot.Embrace.get_subset_bool_array"]], "get_values() (pypath.core.annot.embrace method)": [[34, "pypath.core.annot.Embrace.get_values"]], "labels() (pypath.core.annot.embrace method)": [[34, "pypath.core.annot.Embrace.labels"]], "load() (pypath.core.annot.embrace method)": [[34, "pypath.core.annot.Embrace.load"]], "load_data() (pypath.core.annot.embrace method)": [[34, "pypath.core.annot.Embrace.load_data"]], "load_proteins() (pypath.core.annot.embrace method)": [[34, "pypath.core.annot.Embrace.load_proteins"]], "make_df() (pypath.core.annot.embrace method)": [[34, "pypath.core.annot.Embrace.make_df"]], "numof_entities() (pypath.core.annot.embrace method)": [[34, "pypath.core.annot.Embrace.numof_entities"]], "numof_records() (pypath.core.annot.embrace method)": [[34, "pypath.core.annot.Embrace.numof_records"]], "numof_references() (pypath.core.annot.embrace method)": [[34, "pypath.core.annot.Embrace.numof_references"]], "process() (pypath.core.annot.embrace method)": [[34, "pypath.core.annot.Embrace.process"]], "reload() (pypath.core.annot.embrace method)": [[34, "pypath.core.annot.Embrace.reload"]], "select() (pypath.core.annot.embrace method)": [[34, "pypath.core.annot.Embrace.select"]], "set_method() (pypath.core.annot.embrace method)": [[34, "pypath.core.annot.Embrace.set_method"]], "set_reference_set() (pypath.core.annot.embrace method)": [[34, "pypath.core.annot.Embrace.set_reference_set"]], "show() (pypath.core.annot.embrace method)": [[34, "pypath.core.annot.Embrace.show"]], "subset_intersection() (pypath.core.annot.embrace method)": [[34, "pypath.core.annot.Embrace.subset_intersection"]], "to_array() (pypath.core.annot.embrace method)": [[34, "pypath.core.annot.Embrace.to_array"]], "to_bool_array() (pypath.core.annot.embrace method)": [[34, "pypath.core.annot.Embrace.to_bool_array"]], "to_set() (pypath.core.annot.embrace method)": [[34, "pypath.core.annot.Embrace.to_set"]], "exocarta (class in pypath.core.annot)": [[35, "pypath.core.annot.Exocarta"]], "__init__() (pypath.core.annot.exocarta method)": [[35, "pypath.core.annot.Exocarta.__init__"]], "add_complexes_by_inference() (pypath.core.annot.exocarta method)": [[35, "pypath.core.annot.Exocarta.add_complexes_by_inference"]], "all_complexes() (pypath.core.annot.exocarta method)": [[35, "pypath.core.annot.Exocarta.all_complexes"]], "all_entities() (pypath.core.annot.exocarta method)": [[35, "pypath.core.annot.Exocarta.all_entities"]], "all_mirnas() (pypath.core.annot.exocarta method)": [[35, "pypath.core.annot.Exocarta.all_mirnas"]], "all_proteins() (pypath.core.annot.exocarta method)": [[35, "pypath.core.annot.Exocarta.all_proteins"]], "all_refs() (pypath.core.annot.exocarta method)": [[35, "pypath.core.annot.Exocarta.all_refs"]], "annotate_complex() (pypath.core.annot.exocarta method)": [[35, "pypath.core.annot.Exocarta.annotate_complex"]], "browse() (pypath.core.annot.exocarta method)": [[35, "pypath.core.annot.Exocarta.browse"]], "complex_inference() (pypath.core.annot.exocarta method)": [[35, "pypath.core.annot.Exocarta.complex_inference"]], "coverage() (pypath.core.annot.exocarta method)": [[35, "pypath.core.annot.Exocarta.coverage"]], "curation_effort() (pypath.core.annot.exocarta method)": [[35, "pypath.core.annot.Exocarta.curation_effort"]], "get_names() (pypath.core.annot.exocarta method)": [[35, "pypath.core.annot.Exocarta.get_names"]], "get_reference_set() (pypath.core.annot.exocarta static method)": [[35, "pypath.core.annot.Exocarta.get_reference_set"]], "get_subset() (pypath.core.annot.exocarta method)": [[35, "pypath.core.annot.Exocarta.get_subset"]], "get_subset_bool_array() (pypath.core.annot.exocarta method)": [[35, "pypath.core.annot.Exocarta.get_subset_bool_array"]], "get_values() (pypath.core.annot.exocarta method)": [[35, "pypath.core.annot.Exocarta.get_values"]], "labels() (pypath.core.annot.exocarta method)": [[35, "pypath.core.annot.Exocarta.labels"]], "load() (pypath.core.annot.exocarta method)": [[35, "pypath.core.annot.Exocarta.load"]], "load_data() (pypath.core.annot.exocarta method)": [[35, "pypath.core.annot.Exocarta.load_data"]], "load_proteins() (pypath.core.annot.exocarta method)": [[35, "pypath.core.annot.Exocarta.load_proteins"]], "make_df() (pypath.core.annot.exocarta method)": [[35, "pypath.core.annot.Exocarta.make_df"]], "numof_entities() (pypath.core.annot.exocarta method)": [[35, "pypath.core.annot.Exocarta.numof_entities"]], "numof_records() (pypath.core.annot.exocarta method)": [[35, "pypath.core.annot.Exocarta.numof_records"]], "numof_references() (pypath.core.annot.exocarta method)": [[35, "pypath.core.annot.Exocarta.numof_references"]], "process() (pypath.core.annot.exocarta method)": [[35, "pypath.core.annot.Exocarta.process"]], "reload() (pypath.core.annot.exocarta method)": [[35, "pypath.core.annot.Exocarta.reload"]], "select() (pypath.core.annot.exocarta method)": [[35, "pypath.core.annot.Exocarta.select"]], "set_method() (pypath.core.annot.exocarta method)": [[35, "pypath.core.annot.Exocarta.set_method"]], "set_reference_set() (pypath.core.annot.exocarta method)": [[35, "pypath.core.annot.Exocarta.set_reference_set"]], "show() (pypath.core.annot.exocarta method)": [[35, "pypath.core.annot.Exocarta.show"]], "subset_intersection() (pypath.core.annot.exocarta method)": [[35, "pypath.core.annot.Exocarta.subset_intersection"]], "to_array() (pypath.core.annot.exocarta method)": [[35, "pypath.core.annot.Exocarta.to_array"]], "to_bool_array() (pypath.core.annot.exocarta method)": [[35, "pypath.core.annot.Exocarta.to_bool_array"]], "to_set() (pypath.core.annot.exocarta method)": [[35, "pypath.core.annot.Exocarta.to_set"]], "gocustomintercell (class in pypath.core.annot)": [[36, "pypath.core.annot.GOCustomIntercell"]], "__init__() (pypath.core.annot.gocustomintercell method)": [[36, "pypath.core.annot.GOCustomIntercell.__init__"]], "get_annotation() (pypath.core.annot.gocustomintercell method)": [[36, "pypath.core.annot.GOCustomIntercell.get_annotation"]], "get_annotations() (pypath.core.annot.gocustomintercell method)": [[36, "pypath.core.annot.GOCustomIntercell.get_annotations"]], "process_categories() (pypath.core.annot.gocustomintercell method)": [[36, "pypath.core.annot.GOCustomIntercell.process_categories"]], "reload() (pypath.core.annot.gocustomintercell method)": [[36, "pypath.core.annot.GOCustomIntercell.reload"]], "gointercell (class in pypath.core.annot)": [[37, "pypath.core.annot.GOIntercell"]], "__init__() (pypath.core.annot.gointercell method)": [[37, "pypath.core.annot.GOIntercell.__init__"]], "add_complexes_by_inference() (pypath.core.annot.gointercell method)": [[37, "pypath.core.annot.GOIntercell.add_complexes_by_inference"]], "all_complexes() (pypath.core.annot.gointercell method)": [[37, "pypath.core.annot.GOIntercell.all_complexes"]], "all_entities() (pypath.core.annot.gointercell method)": [[37, "pypath.core.annot.GOIntercell.all_entities"]], "all_mirnas() (pypath.core.annot.gointercell method)": [[37, "pypath.core.annot.GOIntercell.all_mirnas"]], "all_proteins() (pypath.core.annot.gointercell method)": [[37, "pypath.core.annot.GOIntercell.all_proteins"]], "all_refs() (pypath.core.annot.gointercell method)": [[37, "pypath.core.annot.GOIntercell.all_refs"]], "annotate_complex() (pypath.core.annot.gointercell method)": [[37, "pypath.core.annot.GOIntercell.annotate_complex"]], "browse() (pypath.core.annot.gointercell method)": [[37, "pypath.core.annot.GOIntercell.browse"]], "complex_inference() (pypath.core.annot.gointercell method)": [[37, "pypath.core.annot.GOIntercell.complex_inference"]], "coverage() (pypath.core.annot.gointercell method)": [[37, "pypath.core.annot.GOIntercell.coverage"]], "curation_effort() (pypath.core.annot.gointercell method)": [[37, "pypath.core.annot.GOIntercell.curation_effort"]], "get_names() (pypath.core.annot.gointercell method)": [[37, "pypath.core.annot.GOIntercell.get_names"]], "get_reference_set() (pypath.core.annot.gointercell static method)": [[37, "pypath.core.annot.GOIntercell.get_reference_set"]], "get_subset() (pypath.core.annot.gointercell method)": [[37, "pypath.core.annot.GOIntercell.get_subset"]], "get_subset_bool_array() (pypath.core.annot.gointercell method)": [[37, "pypath.core.annot.GOIntercell.get_subset_bool_array"]], "get_values() (pypath.core.annot.gointercell method)": [[37, "pypath.core.annot.GOIntercell.get_values"]], "labels() (pypath.core.annot.gointercell method)": [[37, "pypath.core.annot.GOIntercell.labels"]], "load() (pypath.core.annot.gointercell method)": [[37, "pypath.core.annot.GOIntercell.load"]], "load_data() (pypath.core.annot.gointercell method)": [[37, "pypath.core.annot.GOIntercell.load_data"]], "load_proteins() (pypath.core.annot.gointercell method)": [[37, "pypath.core.annot.GOIntercell.load_proteins"]], "make_df() (pypath.core.annot.gointercell method)": [[37, "pypath.core.annot.GOIntercell.make_df"]], "numof_entities() (pypath.core.annot.gointercell method)": [[37, "pypath.core.annot.GOIntercell.numof_entities"]], "numof_records() (pypath.core.annot.gointercell method)": [[37, "pypath.core.annot.GOIntercell.numof_records"]], "numof_references() (pypath.core.annot.gointercell method)": [[37, "pypath.core.annot.GOIntercell.numof_references"]], "process() (pypath.core.annot.gointercell method)": [[37, "pypath.core.annot.GOIntercell.process"]], "reload() (pypath.core.annot.gointercell method)": [[37, "pypath.core.annot.GOIntercell.reload"]], "select() (pypath.core.annot.gointercell method)": [[37, "pypath.core.annot.GOIntercell.select"]], "set_method() (pypath.core.annot.gointercell method)": [[37, "pypath.core.annot.GOIntercell.set_method"]], "set_reference_set() (pypath.core.annot.gointercell method)": [[37, "pypath.core.annot.GOIntercell.set_reference_set"]], "show() (pypath.core.annot.gointercell method)": [[37, "pypath.core.annot.GOIntercell.show"]], "subset_intersection() (pypath.core.annot.gointercell method)": [[37, "pypath.core.annot.GOIntercell.subset_intersection"]], "to_array() (pypath.core.annot.gointercell method)": [[37, "pypath.core.annot.GOIntercell.to_array"]], "to_bool_array() (pypath.core.annot.gointercell method)": [[37, "pypath.core.annot.GOIntercell.to_bool_array"]], "to_set() (pypath.core.annot.gointercell method)": [[37, "pypath.core.annot.GOIntercell.to_set"]], "gpcrdb (class in pypath.core.annot)": [[38, "pypath.core.annot.Gpcrdb"]], "__init__() (pypath.core.annot.gpcrdb method)": [[38, "pypath.core.annot.Gpcrdb.__init__"]], "add_complexes_by_inference() (pypath.core.annot.gpcrdb method)": [[38, "pypath.core.annot.Gpcrdb.add_complexes_by_inference"]], "all_complexes() (pypath.core.annot.gpcrdb method)": [[38, "pypath.core.annot.Gpcrdb.all_complexes"]], "all_entities() (pypath.core.annot.gpcrdb method)": [[38, "pypath.core.annot.Gpcrdb.all_entities"]], "all_mirnas() (pypath.core.annot.gpcrdb method)": [[38, "pypath.core.annot.Gpcrdb.all_mirnas"]], "all_proteins() (pypath.core.annot.gpcrdb method)": [[38, "pypath.core.annot.Gpcrdb.all_proteins"]], "all_refs() (pypath.core.annot.gpcrdb method)": [[38, "pypath.core.annot.Gpcrdb.all_refs"]], "annotate_complex() (pypath.core.annot.gpcrdb method)": [[38, "pypath.core.annot.Gpcrdb.annotate_complex"]], "browse() (pypath.core.annot.gpcrdb method)": [[38, "pypath.core.annot.Gpcrdb.browse"]], "complex_inference() (pypath.core.annot.gpcrdb method)": [[38, "pypath.core.annot.Gpcrdb.complex_inference"]], "coverage() (pypath.core.annot.gpcrdb method)": [[38, "pypath.core.annot.Gpcrdb.coverage"]], "curation_effort() (pypath.core.annot.gpcrdb method)": [[38, "pypath.core.annot.Gpcrdb.curation_effort"]], "get_names() (pypath.core.annot.gpcrdb method)": [[38, "pypath.core.annot.Gpcrdb.get_names"]], "get_reference_set() (pypath.core.annot.gpcrdb static method)": [[38, "pypath.core.annot.Gpcrdb.get_reference_set"]], "get_subset() (pypath.core.annot.gpcrdb method)": [[38, "pypath.core.annot.Gpcrdb.get_subset"]], "get_subset_bool_array() (pypath.core.annot.gpcrdb method)": [[38, "pypath.core.annot.Gpcrdb.get_subset_bool_array"]], "get_values() (pypath.core.annot.gpcrdb method)": [[38, "pypath.core.annot.Gpcrdb.get_values"]], "labels() (pypath.core.annot.gpcrdb method)": [[38, "pypath.core.annot.Gpcrdb.labels"]], "load() (pypath.core.annot.gpcrdb method)": [[38, "pypath.core.annot.Gpcrdb.load"]], "load_data() (pypath.core.annot.gpcrdb method)": [[38, "pypath.core.annot.Gpcrdb.load_data"]], "load_proteins() (pypath.core.annot.gpcrdb method)": [[38, "pypath.core.annot.Gpcrdb.load_proteins"]], "make_df() (pypath.core.annot.gpcrdb method)": [[38, "pypath.core.annot.Gpcrdb.make_df"]], "numof_entities() (pypath.core.annot.gpcrdb method)": [[38, "pypath.core.annot.Gpcrdb.numof_entities"]], "numof_records() (pypath.core.annot.gpcrdb method)": [[38, "pypath.core.annot.Gpcrdb.numof_records"]], "numof_references() (pypath.core.annot.gpcrdb method)": [[38, "pypath.core.annot.Gpcrdb.numof_references"]], "process() (pypath.core.annot.gpcrdb method)": [[38, "pypath.core.annot.Gpcrdb.process"]], "reload() (pypath.core.annot.gpcrdb method)": [[38, "pypath.core.annot.Gpcrdb.reload"]], "select() (pypath.core.annot.gpcrdb method)": [[38, "pypath.core.annot.Gpcrdb.select"]], "set_method() (pypath.core.annot.gpcrdb method)": [[38, "pypath.core.annot.Gpcrdb.set_method"]], "set_reference_set() (pypath.core.annot.gpcrdb method)": [[38, "pypath.core.annot.Gpcrdb.set_reference_set"]], "show() (pypath.core.annot.gpcrdb method)": [[38, "pypath.core.annot.Gpcrdb.show"]], "subset_intersection() (pypath.core.annot.gpcrdb method)": [[38, "pypath.core.annot.Gpcrdb.subset_intersection"]], "to_array() (pypath.core.annot.gpcrdb method)": [[38, "pypath.core.annot.Gpcrdb.to_array"]], "to_bool_array() (pypath.core.annot.gpcrdb method)": [[38, "pypath.core.annot.Gpcrdb.to_bool_array"]], "to_set() (pypath.core.annot.gpcrdb method)": [[38, "pypath.core.annot.Gpcrdb.to_set"]], "guidetopharmacology (class in pypath.core.annot)": [[39, "pypath.core.annot.GuideToPharmacology"]], "__init__() (pypath.core.annot.guidetopharmacology method)": [[39, "pypath.core.annot.GuideToPharmacology.__init__"]], "add_complexes_by_inference() (pypath.core.annot.guidetopharmacology method)": [[39, "pypath.core.annot.GuideToPharmacology.add_complexes_by_inference"]], "all_complexes() (pypath.core.annot.guidetopharmacology method)": [[39, "pypath.core.annot.GuideToPharmacology.all_complexes"]], "all_entities() (pypath.core.annot.guidetopharmacology method)": [[39, "pypath.core.annot.GuideToPharmacology.all_entities"]], "all_mirnas() (pypath.core.annot.guidetopharmacology method)": [[39, "pypath.core.annot.GuideToPharmacology.all_mirnas"]], "all_proteins() (pypath.core.annot.guidetopharmacology method)": [[39, "pypath.core.annot.GuideToPharmacology.all_proteins"]], "all_refs() (pypath.core.annot.guidetopharmacology method)": [[39, "pypath.core.annot.GuideToPharmacology.all_refs"]], "annotate_complex() (pypath.core.annot.guidetopharmacology method)": [[39, "pypath.core.annot.GuideToPharmacology.annotate_complex"]], "browse() (pypath.core.annot.guidetopharmacology method)": [[39, "pypath.core.annot.GuideToPharmacology.browse"]], "complex_inference() (pypath.core.annot.guidetopharmacology method)": [[39, "pypath.core.annot.GuideToPharmacology.complex_inference"]], "coverage() (pypath.core.annot.guidetopharmacology method)": [[39, "pypath.core.annot.GuideToPharmacology.coverage"]], "curation_effort() (pypath.core.annot.guidetopharmacology method)": [[39, "pypath.core.annot.GuideToPharmacology.curation_effort"]], "get_names() (pypath.core.annot.guidetopharmacology method)": [[39, "pypath.core.annot.GuideToPharmacology.get_names"]], "get_reference_set() (pypath.core.annot.guidetopharmacology static method)": [[39, "pypath.core.annot.GuideToPharmacology.get_reference_set"]], "get_subset() (pypath.core.annot.guidetopharmacology method)": [[39, "pypath.core.annot.GuideToPharmacology.get_subset"]], "get_subset_bool_array() (pypath.core.annot.guidetopharmacology method)": [[39, "pypath.core.annot.GuideToPharmacology.get_subset_bool_array"]], "get_values() (pypath.core.annot.guidetopharmacology method)": [[39, "pypath.core.annot.GuideToPharmacology.get_values"]], "labels() (pypath.core.annot.guidetopharmacology method)": [[39, "pypath.core.annot.GuideToPharmacology.labels"]], "load() (pypath.core.annot.guidetopharmacology method)": [[39, "pypath.core.annot.GuideToPharmacology.load"]], "load_data() (pypath.core.annot.guidetopharmacology method)": [[39, "pypath.core.annot.GuideToPharmacology.load_data"]], "load_proteins() (pypath.core.annot.guidetopharmacology method)": [[39, "pypath.core.annot.GuideToPharmacology.load_proteins"]], "make_df() (pypath.core.annot.guidetopharmacology method)": [[39, "pypath.core.annot.GuideToPharmacology.make_df"]], "numof_entities() (pypath.core.annot.guidetopharmacology method)": [[39, "pypath.core.annot.GuideToPharmacology.numof_entities"]], "numof_records() (pypath.core.annot.guidetopharmacology method)": [[39, "pypath.core.annot.GuideToPharmacology.numof_records"]], "numof_references() (pypath.core.annot.guidetopharmacology method)": [[39, "pypath.core.annot.GuideToPharmacology.numof_references"]], "process() (pypath.core.annot.guidetopharmacology method)": [[39, "pypath.core.annot.GuideToPharmacology.process"]], "reload() (pypath.core.annot.guidetopharmacology method)": [[39, "pypath.core.annot.GuideToPharmacology.reload"]], "select() (pypath.core.annot.guidetopharmacology method)": [[39, "pypath.core.annot.GuideToPharmacology.select"]], "set_method() (pypath.core.annot.guidetopharmacology method)": [[39, "pypath.core.annot.GuideToPharmacology.set_method"]], "set_reference_set() (pypath.core.annot.guidetopharmacology method)": [[39, "pypath.core.annot.GuideToPharmacology.set_reference_set"]], "show() (pypath.core.annot.guidetopharmacology method)": [[39, "pypath.core.annot.GuideToPharmacology.show"]], "subset_intersection() (pypath.core.annot.guidetopharmacology method)": [[39, "pypath.core.annot.GuideToPharmacology.subset_intersection"]], "to_array() (pypath.core.annot.guidetopharmacology method)": [[39, "pypath.core.annot.GuideToPharmacology.to_array"]], "to_bool_array() (pypath.core.annot.guidetopharmacology method)": [[39, "pypath.core.annot.GuideToPharmacology.to_bool_array"]], "to_set() (pypath.core.annot.guidetopharmacology method)": [[39, "pypath.core.annot.GuideToPharmacology.to_set"]], "hpo (class in pypath.core.annot)": [[40, "pypath.core.annot.HPO"]], "__init__() (pypath.core.annot.hpo method)": [[40, "pypath.core.annot.HPO.__init__"]], "add_complexes_by_inference() (pypath.core.annot.hpo method)": [[40, "pypath.core.annot.HPO.add_complexes_by_inference"]], "all_complexes() (pypath.core.annot.hpo method)": [[40, "pypath.core.annot.HPO.all_complexes"]], "all_entities() (pypath.core.annot.hpo method)": [[40, "pypath.core.annot.HPO.all_entities"]], "all_mirnas() (pypath.core.annot.hpo method)": [[40, "pypath.core.annot.HPO.all_mirnas"]], "all_proteins() (pypath.core.annot.hpo method)": [[40, "pypath.core.annot.HPO.all_proteins"]], "all_refs() (pypath.core.annot.hpo method)": [[40, "pypath.core.annot.HPO.all_refs"]], "annotate_complex() (pypath.core.annot.hpo method)": [[40, "pypath.core.annot.HPO.annotate_complex"]], "browse() (pypath.core.annot.hpo method)": [[40, "pypath.core.annot.HPO.browse"]], "complex_inference() (pypath.core.annot.hpo method)": [[40, "pypath.core.annot.HPO.complex_inference"]], "coverage() (pypath.core.annot.hpo method)": [[40, "pypath.core.annot.HPO.coverage"]], "curation_effort() (pypath.core.annot.hpo method)": [[40, "pypath.core.annot.HPO.curation_effort"]], "get_names() (pypath.core.annot.hpo method)": [[40, "pypath.core.annot.HPO.get_names"]], "get_reference_set() (pypath.core.annot.hpo static method)": [[40, "pypath.core.annot.HPO.get_reference_set"]], "get_subset() (pypath.core.annot.hpo method)": [[40, "pypath.core.annot.HPO.get_subset"]], "get_subset_bool_array() (pypath.core.annot.hpo method)": [[40, "pypath.core.annot.HPO.get_subset_bool_array"]], "get_values() (pypath.core.annot.hpo method)": [[40, "pypath.core.annot.HPO.get_values"]], "labels() (pypath.core.annot.hpo method)": [[40, "pypath.core.annot.HPO.labels"]], "load() (pypath.core.annot.hpo method)": [[40, "pypath.core.annot.HPO.load"]], "load_data() (pypath.core.annot.hpo method)": [[40, "pypath.core.annot.HPO.load_data"]], "load_proteins() (pypath.core.annot.hpo method)": [[40, "pypath.core.annot.HPO.load_proteins"]], "make_df() (pypath.core.annot.hpo method)": [[40, "pypath.core.annot.HPO.make_df"]], "numof_entities() (pypath.core.annot.hpo method)": [[40, "pypath.core.annot.HPO.numof_entities"]], "numof_records() (pypath.core.annot.hpo method)": [[40, "pypath.core.annot.HPO.numof_records"]], "numof_references() (pypath.core.annot.hpo method)": [[40, "pypath.core.annot.HPO.numof_references"]], "process() (pypath.core.annot.hpo method)": [[40, "pypath.core.annot.HPO.process"]], "reload() (pypath.core.annot.hpo method)": [[40, "pypath.core.annot.HPO.reload"]], "select() (pypath.core.annot.hpo method)": [[40, "pypath.core.annot.HPO.select"]], "set_method() (pypath.core.annot.hpo method)": [[40, "pypath.core.annot.HPO.set_method"]], "set_reference_set() (pypath.core.annot.hpo method)": [[40, "pypath.core.annot.HPO.set_reference_set"]], "show() (pypath.core.annot.hpo method)": [[40, "pypath.core.annot.HPO.show"]], "subset_intersection() (pypath.core.annot.hpo method)": [[40, "pypath.core.annot.HPO.subset_intersection"]], "to_array() (pypath.core.annot.hpo method)": [[40, "pypath.core.annot.HPO.to_array"]], "to_bool_array() (pypath.core.annot.hpo method)": [[40, "pypath.core.annot.HPO.to_bool_array"]], "to_set() (pypath.core.annot.hpo method)": [[40, "pypath.core.annot.HPO.to_set"]], "hgnc (class in pypath.core.annot)": [[41, "pypath.core.annot.Hgnc"]], "__init__() (pypath.core.annot.hgnc method)": [[41, "pypath.core.annot.Hgnc.__init__"]], "add_complexes_by_inference() (pypath.core.annot.hgnc method)": [[41, "pypath.core.annot.Hgnc.add_complexes_by_inference"]], "all_complexes() (pypath.core.annot.hgnc method)": [[41, "pypath.core.annot.Hgnc.all_complexes"]], "all_entities() (pypath.core.annot.hgnc method)": [[41, "pypath.core.annot.Hgnc.all_entities"]], "all_mirnas() (pypath.core.annot.hgnc method)": [[41, "pypath.core.annot.Hgnc.all_mirnas"]], "all_proteins() (pypath.core.annot.hgnc method)": [[41, "pypath.core.annot.Hgnc.all_proteins"]], "all_refs() (pypath.core.annot.hgnc method)": [[41, "pypath.core.annot.Hgnc.all_refs"]], "annotate_complex() (pypath.core.annot.hgnc method)": [[41, "pypath.core.annot.Hgnc.annotate_complex"]], "browse() (pypath.core.annot.hgnc method)": [[41, "pypath.core.annot.Hgnc.browse"]], "complex_inference() (pypath.core.annot.hgnc method)": [[41, "pypath.core.annot.Hgnc.complex_inference"]], "coverage() (pypath.core.annot.hgnc method)": [[41, "pypath.core.annot.Hgnc.coverage"]], "curation_effort() (pypath.core.annot.hgnc method)": [[41, "pypath.core.annot.Hgnc.curation_effort"]], "get_names() (pypath.core.annot.hgnc method)": [[41, "pypath.core.annot.Hgnc.get_names"]], "get_reference_set() (pypath.core.annot.hgnc static method)": [[41, "pypath.core.annot.Hgnc.get_reference_set"]], "get_subset() (pypath.core.annot.hgnc method)": [[41, "pypath.core.annot.Hgnc.get_subset"]], "get_subset_bool_array() (pypath.core.annot.hgnc method)": [[41, "pypath.core.annot.Hgnc.get_subset_bool_array"]], "get_values() (pypath.core.annot.hgnc method)": [[41, "pypath.core.annot.Hgnc.get_values"]], "labels() (pypath.core.annot.hgnc method)": [[41, "pypath.core.annot.Hgnc.labels"]], "load() (pypath.core.annot.hgnc method)": [[41, "pypath.core.annot.Hgnc.load"]], "load_data() (pypath.core.annot.hgnc method)": [[41, "pypath.core.annot.Hgnc.load_data"]], "load_proteins() (pypath.core.annot.hgnc method)": [[41, "pypath.core.annot.Hgnc.load_proteins"]], "make_df() (pypath.core.annot.hgnc method)": [[41, "pypath.core.annot.Hgnc.make_df"]], "numof_entities() (pypath.core.annot.hgnc method)": [[41, "pypath.core.annot.Hgnc.numof_entities"]], "numof_records() (pypath.core.annot.hgnc method)": [[41, "pypath.core.annot.Hgnc.numof_records"]], "numof_references() (pypath.core.annot.hgnc method)": [[41, "pypath.core.annot.Hgnc.numof_references"]], "process() (pypath.core.annot.hgnc method)": [[41, "pypath.core.annot.Hgnc.process"]], "reload() (pypath.core.annot.hgnc method)": [[41, "pypath.core.annot.Hgnc.reload"]], "select() (pypath.core.annot.hgnc method)": [[41, "pypath.core.annot.Hgnc.select"]], "set_method() (pypath.core.annot.hgnc method)": [[41, "pypath.core.annot.Hgnc.set_method"]], "set_reference_set() (pypath.core.annot.hgnc method)": [[41, "pypath.core.annot.Hgnc.set_reference_set"]], "show() (pypath.core.annot.hgnc method)": [[41, "pypath.core.annot.Hgnc.show"]], "subset_intersection() (pypath.core.annot.hgnc method)": [[41, "pypath.core.annot.Hgnc.subset_intersection"]], "to_array() (pypath.core.annot.hgnc method)": [[41, "pypath.core.annot.Hgnc.to_array"]], "to_bool_array() (pypath.core.annot.hgnc method)": [[41, "pypath.core.annot.Hgnc.to_bool_array"]], "to_set() (pypath.core.annot.hgnc method)": [[41, "pypath.core.annot.Hgnc.to_set"]], "hpmrcomplex (class in pypath.core.annot)": [[42, "pypath.core.annot.HpmrComplex"]], "__init__() (pypath.core.annot.hpmrcomplex method)": [[42, "pypath.core.annot.HpmrComplex.__init__"]], "add_complexes_by_inference() (pypath.core.annot.hpmrcomplex method)": [[42, "pypath.core.annot.HpmrComplex.add_complexes_by_inference"]], "all_complexes() (pypath.core.annot.hpmrcomplex method)": [[42, "pypath.core.annot.HpmrComplex.all_complexes"]], "all_entities() (pypath.core.annot.hpmrcomplex method)": [[42, "pypath.core.annot.HpmrComplex.all_entities"]], "all_mirnas() (pypath.core.annot.hpmrcomplex method)": [[42, "pypath.core.annot.HpmrComplex.all_mirnas"]], "all_proteins() (pypath.core.annot.hpmrcomplex method)": [[42, "pypath.core.annot.HpmrComplex.all_proteins"]], "all_refs() (pypath.core.annot.hpmrcomplex method)": [[42, "pypath.core.annot.HpmrComplex.all_refs"]], "annotate_complex() (pypath.core.annot.hpmrcomplex method)": [[42, "pypath.core.annot.HpmrComplex.annotate_complex"]], "browse() (pypath.core.annot.hpmrcomplex method)": [[42, "pypath.core.annot.HpmrComplex.browse"]], "complex_inference() (pypath.core.annot.hpmrcomplex method)": [[42, "pypath.core.annot.HpmrComplex.complex_inference"]], "coverage() (pypath.core.annot.hpmrcomplex method)": [[42, "pypath.core.annot.HpmrComplex.coverage"]], "curation_effort() (pypath.core.annot.hpmrcomplex method)": [[42, "pypath.core.annot.HpmrComplex.curation_effort"]], "get_names() (pypath.core.annot.hpmrcomplex method)": [[42, "pypath.core.annot.HpmrComplex.get_names"]], "get_reference_set() (pypath.core.annot.hpmrcomplex static method)": [[42, "pypath.core.annot.HpmrComplex.get_reference_set"]], "get_subset() (pypath.core.annot.hpmrcomplex method)": [[42, "pypath.core.annot.HpmrComplex.get_subset"]], "get_subset_bool_array() (pypath.core.annot.hpmrcomplex method)": [[42, "pypath.core.annot.HpmrComplex.get_subset_bool_array"]], "get_values() (pypath.core.annot.hpmrcomplex method)": [[42, "pypath.core.annot.HpmrComplex.get_values"]], "labels() (pypath.core.annot.hpmrcomplex method)": [[42, "pypath.core.annot.HpmrComplex.labels"]], "load() (pypath.core.annot.hpmrcomplex method)": [[42, "pypath.core.annot.HpmrComplex.load"]], "load_data() (pypath.core.annot.hpmrcomplex method)": [[42, "pypath.core.annot.HpmrComplex.load_data"]], "load_proteins() (pypath.core.annot.hpmrcomplex method)": [[42, "pypath.core.annot.HpmrComplex.load_proteins"]], "make_df() (pypath.core.annot.hpmrcomplex method)": [[42, "pypath.core.annot.HpmrComplex.make_df"]], "numof_entities() (pypath.core.annot.hpmrcomplex method)": [[42, "pypath.core.annot.HpmrComplex.numof_entities"]], "numof_records() (pypath.core.annot.hpmrcomplex method)": [[42, "pypath.core.annot.HpmrComplex.numof_records"]], "numof_references() (pypath.core.annot.hpmrcomplex method)": [[42, "pypath.core.annot.HpmrComplex.numof_references"]], "process() (pypath.core.annot.hpmrcomplex method)": [[42, "pypath.core.annot.HpmrComplex.process"]], "reload() (pypath.core.annot.hpmrcomplex method)": [[42, "pypath.core.annot.HpmrComplex.reload"]], "select() (pypath.core.annot.hpmrcomplex method)": [[42, "pypath.core.annot.HpmrComplex.select"]], "set_method() (pypath.core.annot.hpmrcomplex method)": [[42, "pypath.core.annot.HpmrComplex.set_method"]], "set_reference_set() (pypath.core.annot.hpmrcomplex method)": [[42, "pypath.core.annot.HpmrComplex.set_reference_set"]], "show() (pypath.core.annot.hpmrcomplex method)": [[42, "pypath.core.annot.HpmrComplex.show"]], "subset_intersection() (pypath.core.annot.hpmrcomplex method)": [[42, "pypath.core.annot.HpmrComplex.subset_intersection"]], "to_array() (pypath.core.annot.hpmrcomplex method)": [[42, "pypath.core.annot.HpmrComplex.to_array"]], "to_bool_array() (pypath.core.annot.hpmrcomplex method)": [[42, "pypath.core.annot.HpmrComplex.to_bool_array"]], "to_set() (pypath.core.annot.hpmrcomplex method)": [[42, "pypath.core.annot.HpmrComplex.to_set"]], "humanplasmamembranereceptome (class in pypath.core.annot)": [[43, "pypath.core.annot.HumanPlasmaMembraneReceptome"]], "__init__() (pypath.core.annot.humanplasmamembranereceptome method)": [[43, "pypath.core.annot.HumanPlasmaMembraneReceptome.__init__"]], "add_complexes_by_inference() (pypath.core.annot.humanplasmamembranereceptome method)": [[43, "pypath.core.annot.HumanPlasmaMembraneReceptome.add_complexes_by_inference"]], "all_complexes() (pypath.core.annot.humanplasmamembranereceptome method)": [[43, "pypath.core.annot.HumanPlasmaMembraneReceptome.all_complexes"]], "all_entities() (pypath.core.annot.humanplasmamembranereceptome method)": [[43, "pypath.core.annot.HumanPlasmaMembraneReceptome.all_entities"]], "all_mirnas() (pypath.core.annot.humanplasmamembranereceptome method)": [[43, "pypath.core.annot.HumanPlasmaMembraneReceptome.all_mirnas"]], "all_proteins() (pypath.core.annot.humanplasmamembranereceptome method)": [[43, "pypath.core.annot.HumanPlasmaMembraneReceptome.all_proteins"]], "all_refs() (pypath.core.annot.humanplasmamembranereceptome method)": [[43, "pypath.core.annot.HumanPlasmaMembraneReceptome.all_refs"]], "annotate_complex() (pypath.core.annot.humanplasmamembranereceptome method)": [[43, "pypath.core.annot.HumanPlasmaMembraneReceptome.annotate_complex"]], "browse() (pypath.core.annot.humanplasmamembranereceptome method)": [[43, "pypath.core.annot.HumanPlasmaMembraneReceptome.browse"]], "complex_inference() (pypath.core.annot.humanplasmamembranereceptome method)": [[43, "pypath.core.annot.HumanPlasmaMembraneReceptome.complex_inference"]], "coverage() (pypath.core.annot.humanplasmamembranereceptome method)": [[43, "pypath.core.annot.HumanPlasmaMembraneReceptome.coverage"]], "curation_effort() (pypath.core.annot.humanplasmamembranereceptome method)": [[43, "pypath.core.annot.HumanPlasmaMembraneReceptome.curation_effort"]], "get_names() (pypath.core.annot.humanplasmamembranereceptome method)": [[43, "pypath.core.annot.HumanPlasmaMembraneReceptome.get_names"]], "get_reference_set() (pypath.core.annot.humanplasmamembranereceptome static method)": [[43, "pypath.core.annot.HumanPlasmaMembraneReceptome.get_reference_set"]], "get_subset() (pypath.core.annot.humanplasmamembranereceptome method)": [[43, "pypath.core.annot.HumanPlasmaMembraneReceptome.get_subset"]], "get_subset_bool_array() (pypath.core.annot.humanplasmamembranereceptome method)": [[43, "pypath.core.annot.HumanPlasmaMembraneReceptome.get_subset_bool_array"]], "get_values() (pypath.core.annot.humanplasmamembranereceptome method)": [[43, "pypath.core.annot.HumanPlasmaMembraneReceptome.get_values"]], "labels() (pypath.core.annot.humanplasmamembranereceptome method)": [[43, "pypath.core.annot.HumanPlasmaMembraneReceptome.labels"]], "load() (pypath.core.annot.humanplasmamembranereceptome method)": [[43, "pypath.core.annot.HumanPlasmaMembraneReceptome.load"]], "load_data() (pypath.core.annot.humanplasmamembranereceptome method)": [[43, "pypath.core.annot.HumanPlasmaMembraneReceptome.load_data"]], "load_proteins() (pypath.core.annot.humanplasmamembranereceptome method)": [[43, "pypath.core.annot.HumanPlasmaMembraneReceptome.load_proteins"]], "make_df() (pypath.core.annot.humanplasmamembranereceptome method)": [[43, "pypath.core.annot.HumanPlasmaMembraneReceptome.make_df"]], "numof_entities() (pypath.core.annot.humanplasmamembranereceptome method)": [[43, "pypath.core.annot.HumanPlasmaMembraneReceptome.numof_entities"]], "numof_records() (pypath.core.annot.humanplasmamembranereceptome method)": [[43, "pypath.core.annot.HumanPlasmaMembraneReceptome.numof_records"]], "numof_references() (pypath.core.annot.humanplasmamembranereceptome method)": [[43, "pypath.core.annot.HumanPlasmaMembraneReceptome.numof_references"]], "process() (pypath.core.annot.humanplasmamembranereceptome method)": [[43, "pypath.core.annot.HumanPlasmaMembraneReceptome.process"]], "reload() (pypath.core.annot.humanplasmamembranereceptome method)": [[43, "pypath.core.annot.HumanPlasmaMembraneReceptome.reload"]], "select() (pypath.core.annot.humanplasmamembranereceptome method)": [[43, "pypath.core.annot.HumanPlasmaMembraneReceptome.select"]], "set_method() (pypath.core.annot.humanplasmamembranereceptome method)": [[43, "pypath.core.annot.HumanPlasmaMembraneReceptome.set_method"]], "set_reference_set() (pypath.core.annot.humanplasmamembranereceptome method)": [[43, "pypath.core.annot.HumanPlasmaMembraneReceptome.set_reference_set"]], "show() (pypath.core.annot.humanplasmamembranereceptome method)": [[43, "pypath.core.annot.HumanPlasmaMembraneReceptome.show"]], "subset_intersection() (pypath.core.annot.humanplasmamembranereceptome method)": [[43, "pypath.core.annot.HumanPlasmaMembraneReceptome.subset_intersection"]], "to_array() (pypath.core.annot.humanplasmamembranereceptome method)": [[43, "pypath.core.annot.HumanPlasmaMembraneReceptome.to_array"]], "to_bool_array() (pypath.core.annot.humanplasmamembranereceptome method)": [[43, "pypath.core.annot.HumanPlasmaMembraneReceptome.to_bool_array"]], "to_set() (pypath.core.annot.humanplasmamembranereceptome method)": [[43, "pypath.core.annot.HumanPlasmaMembraneReceptome.to_set"]], "humanproteinatlas (class in pypath.core.annot)": [[44, "pypath.core.annot.HumanProteinAtlas"]], "__init__() (pypath.core.annot.humanproteinatlas method)": [[44, "pypath.core.annot.HumanProteinAtlas.__init__"]], "add_complexes_by_inference() (pypath.core.annot.humanproteinatlas method)": [[44, "pypath.core.annot.HumanProteinAtlas.add_complexes_by_inference"]], "all_complexes() (pypath.core.annot.humanproteinatlas method)": [[44, "pypath.core.annot.HumanProteinAtlas.all_complexes"]], "all_entities() (pypath.core.annot.humanproteinatlas method)": [[44, "pypath.core.annot.HumanProteinAtlas.all_entities"]], "all_mirnas() (pypath.core.annot.humanproteinatlas method)": [[44, "pypath.core.annot.HumanProteinAtlas.all_mirnas"]], "all_proteins() (pypath.core.annot.humanproteinatlas method)": [[44, "pypath.core.annot.HumanProteinAtlas.all_proteins"]], "all_refs() (pypath.core.annot.humanproteinatlas method)": [[44, "pypath.core.annot.HumanProteinAtlas.all_refs"]], "annotate_complex() (pypath.core.annot.humanproteinatlas method)": [[44, "pypath.core.annot.HumanProteinAtlas.annotate_complex"]], "browse() (pypath.core.annot.humanproteinatlas method)": [[44, "pypath.core.annot.HumanProteinAtlas.browse"]], "complex_inference() (pypath.core.annot.humanproteinatlas method)": [[44, "pypath.core.annot.HumanProteinAtlas.complex_inference"]], "coverage() (pypath.core.annot.humanproteinatlas method)": [[44, "pypath.core.annot.HumanProteinAtlas.coverage"]], "curation_effort() (pypath.core.annot.humanproteinatlas method)": [[44, "pypath.core.annot.HumanProteinAtlas.curation_effort"]], "get_names() (pypath.core.annot.humanproteinatlas method)": [[44, "pypath.core.annot.HumanProteinAtlas.get_names"]], "get_reference_set() (pypath.core.annot.humanproteinatlas static method)": [[44, "pypath.core.annot.HumanProteinAtlas.get_reference_set"]], "get_subset() (pypath.core.annot.humanproteinatlas method)": [[44, "pypath.core.annot.HumanProteinAtlas.get_subset"]], "get_subset_bool_array() (pypath.core.annot.humanproteinatlas method)": [[44, "pypath.core.annot.HumanProteinAtlas.get_subset_bool_array"]], "get_values() (pypath.core.annot.humanproteinatlas method)": [[44, "pypath.core.annot.HumanProteinAtlas.get_values"]], "labels() (pypath.core.annot.humanproteinatlas method)": [[44, "pypath.core.annot.HumanProteinAtlas.labels"]], "load() (pypath.core.annot.humanproteinatlas method)": [[44, "pypath.core.annot.HumanProteinAtlas.load"]], "load_data() (pypath.core.annot.humanproteinatlas method)": [[44, "pypath.core.annot.HumanProteinAtlas.load_data"]], "load_proteins() (pypath.core.annot.humanproteinatlas method)": [[44, "pypath.core.annot.HumanProteinAtlas.load_proteins"]], "make_df() (pypath.core.annot.humanproteinatlas method)": [[44, "pypath.core.annot.HumanProteinAtlas.make_df"]], "numof_entities() (pypath.core.annot.humanproteinatlas method)": [[44, "pypath.core.annot.HumanProteinAtlas.numof_entities"]], "numof_records() (pypath.core.annot.humanproteinatlas method)": [[44, "pypath.core.annot.HumanProteinAtlas.numof_records"]], "numof_references() (pypath.core.annot.humanproteinatlas method)": [[44, "pypath.core.annot.HumanProteinAtlas.numof_references"]], "process() (pypath.core.annot.humanproteinatlas method)": [[44, "pypath.core.annot.HumanProteinAtlas.process"]], "reload() (pypath.core.annot.humanproteinatlas method)": [[44, "pypath.core.annot.HumanProteinAtlas.reload"]], "select() (pypath.core.annot.humanproteinatlas method)": [[44, "pypath.core.annot.HumanProteinAtlas.select"]], "set_method() (pypath.core.annot.humanproteinatlas method)": [[44, "pypath.core.annot.HumanProteinAtlas.set_method"]], "set_reference_set() (pypath.core.annot.humanproteinatlas method)": [[44, "pypath.core.annot.HumanProteinAtlas.set_reference_set"]], "show() (pypath.core.annot.humanproteinatlas method)": [[44, "pypath.core.annot.HumanProteinAtlas.show"]], "subset_intersection() (pypath.core.annot.humanproteinatlas method)": [[44, "pypath.core.annot.HumanProteinAtlas.subset_intersection"]], "to_array() (pypath.core.annot.humanproteinatlas method)": [[44, "pypath.core.annot.HumanProteinAtlas.to_array"]], "to_bool_array() (pypath.core.annot.humanproteinatlas method)": [[44, "pypath.core.annot.HumanProteinAtlas.to_bool_array"]], "to_set() (pypath.core.annot.humanproteinatlas method)": [[44, "pypath.core.annot.HumanProteinAtlas.to_set"]], "humanproteinatlassecretome (class in pypath.core.annot)": [[45, "pypath.core.annot.HumanProteinAtlasSecretome"]], "__init__() (pypath.core.annot.humanproteinatlassecretome method)": [[45, "pypath.core.annot.HumanProteinAtlasSecretome.__init__"]], "add_complexes_by_inference() (pypath.core.annot.humanproteinatlassecretome method)": [[45, "pypath.core.annot.HumanProteinAtlasSecretome.add_complexes_by_inference"]], "all_complexes() (pypath.core.annot.humanproteinatlassecretome method)": [[45, "pypath.core.annot.HumanProteinAtlasSecretome.all_complexes"]], "all_entities() (pypath.core.annot.humanproteinatlassecretome method)": [[45, "pypath.core.annot.HumanProteinAtlasSecretome.all_entities"]], "all_mirnas() (pypath.core.annot.humanproteinatlassecretome method)": [[45, "pypath.core.annot.HumanProteinAtlasSecretome.all_mirnas"]], "all_proteins() (pypath.core.annot.humanproteinatlassecretome method)": [[45, "pypath.core.annot.HumanProteinAtlasSecretome.all_proteins"]], "all_refs() (pypath.core.annot.humanproteinatlassecretome method)": [[45, "pypath.core.annot.HumanProteinAtlasSecretome.all_refs"]], "annotate_complex() (pypath.core.annot.humanproteinatlassecretome method)": [[45, "pypath.core.annot.HumanProteinAtlasSecretome.annotate_complex"]], "browse() (pypath.core.annot.humanproteinatlassecretome method)": [[45, "pypath.core.annot.HumanProteinAtlasSecretome.browse"]], "complex_inference() (pypath.core.annot.humanproteinatlassecretome method)": [[45, "pypath.core.annot.HumanProteinAtlasSecretome.complex_inference"]], "coverage() (pypath.core.annot.humanproteinatlassecretome method)": [[45, "pypath.core.annot.HumanProteinAtlasSecretome.coverage"]], "curation_effort() (pypath.core.annot.humanproteinatlassecretome method)": [[45, "pypath.core.annot.HumanProteinAtlasSecretome.curation_effort"]], "get_names() (pypath.core.annot.humanproteinatlassecretome method)": [[45, "pypath.core.annot.HumanProteinAtlasSecretome.get_names"]], "get_reference_set() (pypath.core.annot.humanproteinatlassecretome static method)": [[45, "pypath.core.annot.HumanProteinAtlasSecretome.get_reference_set"]], "get_subset() (pypath.core.annot.humanproteinatlassecretome method)": [[45, "pypath.core.annot.HumanProteinAtlasSecretome.get_subset"]], "get_subset_bool_array() (pypath.core.annot.humanproteinatlassecretome method)": [[45, "pypath.core.annot.HumanProteinAtlasSecretome.get_subset_bool_array"]], "get_values() (pypath.core.annot.humanproteinatlassecretome method)": [[45, "pypath.core.annot.HumanProteinAtlasSecretome.get_values"]], "labels() (pypath.core.annot.humanproteinatlassecretome method)": [[45, "pypath.core.annot.HumanProteinAtlasSecretome.labels"]], "load() (pypath.core.annot.humanproteinatlassecretome method)": [[45, "pypath.core.annot.HumanProteinAtlasSecretome.load"]], "load_data() (pypath.core.annot.humanproteinatlassecretome method)": [[45, "pypath.core.annot.HumanProteinAtlasSecretome.load_data"]], "load_proteins() (pypath.core.annot.humanproteinatlassecretome method)": [[45, "pypath.core.annot.HumanProteinAtlasSecretome.load_proteins"]], "make_df() (pypath.core.annot.humanproteinatlassecretome method)": [[45, "pypath.core.annot.HumanProteinAtlasSecretome.make_df"]], "numof_entities() (pypath.core.annot.humanproteinatlassecretome method)": [[45, "pypath.core.annot.HumanProteinAtlasSecretome.numof_entities"]], "numof_records() (pypath.core.annot.humanproteinatlassecretome method)": [[45, "pypath.core.annot.HumanProteinAtlasSecretome.numof_records"]], "numof_references() (pypath.core.annot.humanproteinatlassecretome method)": [[45, "pypath.core.annot.HumanProteinAtlasSecretome.numof_references"]], "process() (pypath.core.annot.humanproteinatlassecretome method)": [[45, "pypath.core.annot.HumanProteinAtlasSecretome.process"]], "reload() (pypath.core.annot.humanproteinatlassecretome method)": [[45, "pypath.core.annot.HumanProteinAtlasSecretome.reload"]], "select() (pypath.core.annot.humanproteinatlassecretome method)": [[45, "pypath.core.annot.HumanProteinAtlasSecretome.select"]], "set_method() (pypath.core.annot.humanproteinatlassecretome method)": [[45, "pypath.core.annot.HumanProteinAtlasSecretome.set_method"]], "set_reference_set() (pypath.core.annot.humanproteinatlassecretome method)": [[45, "pypath.core.annot.HumanProteinAtlasSecretome.set_reference_set"]], "show() (pypath.core.annot.humanproteinatlassecretome method)": [[45, "pypath.core.annot.HumanProteinAtlasSecretome.show"]], "subset_intersection() (pypath.core.annot.humanproteinatlassecretome method)": [[45, "pypath.core.annot.HumanProteinAtlasSecretome.subset_intersection"]], "to_array() (pypath.core.annot.humanproteinatlassecretome method)": [[45, "pypath.core.annot.HumanProteinAtlasSecretome.to_array"]], "to_bool_array() (pypath.core.annot.humanproteinatlassecretome method)": [[45, "pypath.core.annot.HumanProteinAtlasSecretome.to_bool_array"]], "to_set() (pypath.core.annot.humanproteinatlassecretome method)": [[45, "pypath.core.annot.HumanProteinAtlasSecretome.to_set"]], "humanproteinatlassubcellular (class in pypath.core.annot)": [[46, "pypath.core.annot.HumanProteinAtlasSubcellular"]], "__init__() (pypath.core.annot.humanproteinatlassubcellular method)": [[46, "pypath.core.annot.HumanProteinAtlasSubcellular.__init__"]], "add_complexes_by_inference() (pypath.core.annot.humanproteinatlassubcellular method)": [[46, "pypath.core.annot.HumanProteinAtlasSubcellular.add_complexes_by_inference"]], "all_complexes() (pypath.core.annot.humanproteinatlassubcellular method)": [[46, "pypath.core.annot.HumanProteinAtlasSubcellular.all_complexes"]], "all_entities() (pypath.core.annot.humanproteinatlassubcellular method)": [[46, "pypath.core.annot.HumanProteinAtlasSubcellular.all_entities"]], "all_mirnas() (pypath.core.annot.humanproteinatlassubcellular method)": [[46, "pypath.core.annot.HumanProteinAtlasSubcellular.all_mirnas"]], "all_proteins() (pypath.core.annot.humanproteinatlassubcellular method)": [[46, "pypath.core.annot.HumanProteinAtlasSubcellular.all_proteins"]], "all_refs() (pypath.core.annot.humanproteinatlassubcellular method)": [[46, "pypath.core.annot.HumanProteinAtlasSubcellular.all_refs"]], "annotate_complex() (pypath.core.annot.humanproteinatlassubcellular method)": [[46, "pypath.core.annot.HumanProteinAtlasSubcellular.annotate_complex"]], "browse() (pypath.core.annot.humanproteinatlassubcellular method)": [[46, "pypath.core.annot.HumanProteinAtlasSubcellular.browse"]], "complex_inference() (pypath.core.annot.humanproteinatlassubcellular method)": [[46, "pypath.core.annot.HumanProteinAtlasSubcellular.complex_inference"]], "coverage() (pypath.core.annot.humanproteinatlassubcellular method)": [[46, "pypath.core.annot.HumanProteinAtlasSubcellular.coverage"]], "curation_effort() (pypath.core.annot.humanproteinatlassubcellular method)": [[46, "pypath.core.annot.HumanProteinAtlasSubcellular.curation_effort"]], "get_names() (pypath.core.annot.humanproteinatlassubcellular method)": [[46, "pypath.core.annot.HumanProteinAtlasSubcellular.get_names"]], "get_reference_set() (pypath.core.annot.humanproteinatlassubcellular static method)": [[46, "pypath.core.annot.HumanProteinAtlasSubcellular.get_reference_set"]], "get_subset() (pypath.core.annot.humanproteinatlassubcellular method)": [[46, "pypath.core.annot.HumanProteinAtlasSubcellular.get_subset"]], "get_subset_bool_array() (pypath.core.annot.humanproteinatlassubcellular method)": [[46, "pypath.core.annot.HumanProteinAtlasSubcellular.get_subset_bool_array"]], "get_values() (pypath.core.annot.humanproteinatlassubcellular method)": [[46, "pypath.core.annot.HumanProteinAtlasSubcellular.get_values"]], "labels() (pypath.core.annot.humanproteinatlassubcellular method)": [[46, "pypath.core.annot.HumanProteinAtlasSubcellular.labels"]], "load() (pypath.core.annot.humanproteinatlassubcellular method)": [[46, "pypath.core.annot.HumanProteinAtlasSubcellular.load"]], "load_data() (pypath.core.annot.humanproteinatlassubcellular method)": [[46, "pypath.core.annot.HumanProteinAtlasSubcellular.load_data"]], "load_proteins() (pypath.core.annot.humanproteinatlassubcellular method)": [[46, "pypath.core.annot.HumanProteinAtlasSubcellular.load_proteins"]], "make_df() (pypath.core.annot.humanproteinatlassubcellular method)": [[46, "pypath.core.annot.HumanProteinAtlasSubcellular.make_df"]], "numof_entities() (pypath.core.annot.humanproteinatlassubcellular method)": [[46, "pypath.core.annot.HumanProteinAtlasSubcellular.numof_entities"]], "numof_records() (pypath.core.annot.humanproteinatlassubcellular method)": [[46, "pypath.core.annot.HumanProteinAtlasSubcellular.numof_records"]], "numof_references() (pypath.core.annot.humanproteinatlassubcellular method)": [[46, "pypath.core.annot.HumanProteinAtlasSubcellular.numof_references"]], "process() (pypath.core.annot.humanproteinatlassubcellular method)": [[46, "pypath.core.annot.HumanProteinAtlasSubcellular.process"]], "reload() (pypath.core.annot.humanproteinatlassubcellular method)": [[46, "pypath.core.annot.HumanProteinAtlasSubcellular.reload"]], "select() (pypath.core.annot.humanproteinatlassubcellular method)": [[46, "pypath.core.annot.HumanProteinAtlasSubcellular.select"]], "set_method() (pypath.core.annot.humanproteinatlassubcellular method)": [[46, "pypath.core.annot.HumanProteinAtlasSubcellular.set_method"]], "set_reference_set() (pypath.core.annot.humanproteinatlassubcellular method)": [[46, "pypath.core.annot.HumanProteinAtlasSubcellular.set_reference_set"]], "show() (pypath.core.annot.humanproteinatlassubcellular method)": [[46, "pypath.core.annot.HumanProteinAtlasSubcellular.show"]], "subset_intersection() (pypath.core.annot.humanproteinatlassubcellular method)": [[46, "pypath.core.annot.HumanProteinAtlasSubcellular.subset_intersection"]], "to_array() (pypath.core.annot.humanproteinatlassubcellular method)": [[46, "pypath.core.annot.HumanProteinAtlasSubcellular.to_array"]], "to_bool_array() (pypath.core.annot.humanproteinatlassubcellular method)": [[46, "pypath.core.annot.HumanProteinAtlasSubcellular.to_bool_array"]], "to_set() (pypath.core.annot.humanproteinatlassubcellular method)": [[46, "pypath.core.annot.HumanProteinAtlasSubcellular.to_set"]], "humancellmap (class in pypath.core.annot)": [[47, "pypath.core.annot.Humancellmap"]], "__init__() (pypath.core.annot.humancellmap method)": [[47, "pypath.core.annot.Humancellmap.__init__"]], "add_complexes_by_inference() (pypath.core.annot.humancellmap method)": [[47, "pypath.core.annot.Humancellmap.add_complexes_by_inference"]], "all_complexes() (pypath.core.annot.humancellmap method)": [[47, "pypath.core.annot.Humancellmap.all_complexes"]], "all_entities() (pypath.core.annot.humancellmap method)": [[47, "pypath.core.annot.Humancellmap.all_entities"]], "all_mirnas() (pypath.core.annot.humancellmap method)": [[47, "pypath.core.annot.Humancellmap.all_mirnas"]], "all_proteins() (pypath.core.annot.humancellmap method)": [[47, "pypath.core.annot.Humancellmap.all_proteins"]], "all_refs() (pypath.core.annot.humancellmap method)": [[47, "pypath.core.annot.Humancellmap.all_refs"]], "annotate_complex() (pypath.core.annot.humancellmap method)": [[47, "pypath.core.annot.Humancellmap.annotate_complex"]], "browse() (pypath.core.annot.humancellmap method)": [[47, "pypath.core.annot.Humancellmap.browse"]], "complex_inference() (pypath.core.annot.humancellmap method)": [[47, "pypath.core.annot.Humancellmap.complex_inference"]], "coverage() (pypath.core.annot.humancellmap method)": [[47, "pypath.core.annot.Humancellmap.coverage"]], "curation_effort() (pypath.core.annot.humancellmap method)": [[47, "pypath.core.annot.Humancellmap.curation_effort"]], "get_names() (pypath.core.annot.humancellmap method)": [[47, "pypath.core.annot.Humancellmap.get_names"]], "get_reference_set() (pypath.core.annot.humancellmap static method)": [[47, "pypath.core.annot.Humancellmap.get_reference_set"]], "get_subset() (pypath.core.annot.humancellmap method)": [[47, "pypath.core.annot.Humancellmap.get_subset"]], "get_subset_bool_array() (pypath.core.annot.humancellmap method)": [[47, "pypath.core.annot.Humancellmap.get_subset_bool_array"]], "get_values() (pypath.core.annot.humancellmap method)": [[47, "pypath.core.annot.Humancellmap.get_values"]], "labels() (pypath.core.annot.humancellmap method)": [[47, "pypath.core.annot.Humancellmap.labels"]], "load() (pypath.core.annot.humancellmap method)": [[47, "pypath.core.annot.Humancellmap.load"]], "load_data() (pypath.core.annot.humancellmap method)": [[47, "pypath.core.annot.Humancellmap.load_data"]], "load_proteins() (pypath.core.annot.humancellmap method)": [[47, "pypath.core.annot.Humancellmap.load_proteins"]], "make_df() (pypath.core.annot.humancellmap method)": [[47, "pypath.core.annot.Humancellmap.make_df"]], "numof_entities() (pypath.core.annot.humancellmap method)": [[47, "pypath.core.annot.Humancellmap.numof_entities"]], "numof_records() (pypath.core.annot.humancellmap method)": [[47, "pypath.core.annot.Humancellmap.numof_records"]], "numof_references() (pypath.core.annot.humancellmap method)": [[47, "pypath.core.annot.Humancellmap.numof_references"]], "process() (pypath.core.annot.humancellmap method)": [[47, "pypath.core.annot.Humancellmap.process"]], "reload() (pypath.core.annot.humancellmap method)": [[47, "pypath.core.annot.Humancellmap.reload"]], "select() (pypath.core.annot.humancellmap method)": [[47, "pypath.core.annot.Humancellmap.select"]], "set_method() (pypath.core.annot.humancellmap method)": [[47, "pypath.core.annot.Humancellmap.set_method"]], "set_reference_set() (pypath.core.annot.humancellmap method)": [[47, "pypath.core.annot.Humancellmap.set_reference_set"]], "show() (pypath.core.annot.humancellmap method)": [[47, "pypath.core.annot.Humancellmap.show"]], "subset_intersection() (pypath.core.annot.humancellmap method)": [[47, "pypath.core.annot.Humancellmap.subset_intersection"]], "to_array() (pypath.core.annot.humancellmap method)": [[47, "pypath.core.annot.Humancellmap.to_array"]], "to_bool_array() (pypath.core.annot.humancellmap method)": [[47, "pypath.core.annot.Humancellmap.to_bool_array"]], "to_set() (pypath.core.annot.humancellmap method)": [[47, "pypath.core.annot.Humancellmap.to_set"]], "icellnet (class in pypath.core.annot)": [[48, "pypath.core.annot.Icellnet"]], "__init__() (pypath.core.annot.icellnet method)": [[48, "pypath.core.annot.Icellnet.__init__"]], "add_complexes_by_inference() (pypath.core.annot.icellnet method)": [[48, "pypath.core.annot.Icellnet.add_complexes_by_inference"]], "all_complexes() (pypath.core.annot.icellnet method)": [[48, "pypath.core.annot.Icellnet.all_complexes"]], "all_entities() (pypath.core.annot.icellnet method)": [[48, "pypath.core.annot.Icellnet.all_entities"]], "all_mirnas() (pypath.core.annot.icellnet method)": [[48, "pypath.core.annot.Icellnet.all_mirnas"]], "all_proteins() (pypath.core.annot.icellnet method)": [[48, "pypath.core.annot.Icellnet.all_proteins"]], "all_refs() (pypath.core.annot.icellnet method)": [[48, "pypath.core.annot.Icellnet.all_refs"]], "annotate_complex() (pypath.core.annot.icellnet method)": [[48, "pypath.core.annot.Icellnet.annotate_complex"]], "browse() (pypath.core.annot.icellnet method)": [[48, "pypath.core.annot.Icellnet.browse"]], "complex_inference() (pypath.core.annot.icellnet method)": [[48, "pypath.core.annot.Icellnet.complex_inference"]], "coverage() (pypath.core.annot.icellnet method)": [[48, "pypath.core.annot.Icellnet.coverage"]], "curation_effort() (pypath.core.annot.icellnet method)": [[48, "pypath.core.annot.Icellnet.curation_effort"]], "get_names() (pypath.core.annot.icellnet method)": [[48, "pypath.core.annot.Icellnet.get_names"]], "get_reference_set() (pypath.core.annot.icellnet static method)": [[48, "pypath.core.annot.Icellnet.get_reference_set"]], "get_subset() (pypath.core.annot.icellnet method)": [[48, "pypath.core.annot.Icellnet.get_subset"]], "get_subset_bool_array() (pypath.core.annot.icellnet method)": [[48, "pypath.core.annot.Icellnet.get_subset_bool_array"]], "get_values() (pypath.core.annot.icellnet method)": [[48, "pypath.core.annot.Icellnet.get_values"]], "labels() (pypath.core.annot.icellnet method)": [[48, "pypath.core.annot.Icellnet.labels"]], "load() (pypath.core.annot.icellnet method)": [[48, "pypath.core.annot.Icellnet.load"]], "load_data() (pypath.core.annot.icellnet method)": [[48, "pypath.core.annot.Icellnet.load_data"]], "load_proteins() (pypath.core.annot.icellnet method)": [[48, "pypath.core.annot.Icellnet.load_proteins"]], "make_df() (pypath.core.annot.icellnet method)": [[48, "pypath.core.annot.Icellnet.make_df"]], "numof_entities() (pypath.core.annot.icellnet method)": [[48, "pypath.core.annot.Icellnet.numof_entities"]], "numof_records() (pypath.core.annot.icellnet method)": [[48, "pypath.core.annot.Icellnet.numof_records"]], "numof_references() (pypath.core.annot.icellnet method)": [[48, "pypath.core.annot.Icellnet.numof_references"]], "process() (pypath.core.annot.icellnet method)": [[48, "pypath.core.annot.Icellnet.process"]], "reload() (pypath.core.annot.icellnet method)": [[48, "pypath.core.annot.Icellnet.reload"]], "select() (pypath.core.annot.icellnet method)": [[48, "pypath.core.annot.Icellnet.select"]], "set_method() (pypath.core.annot.icellnet method)": [[48, "pypath.core.annot.Icellnet.set_method"]], "set_reference_set() (pypath.core.annot.icellnet method)": [[48, "pypath.core.annot.Icellnet.set_reference_set"]], "show() (pypath.core.annot.icellnet method)": [[48, "pypath.core.annot.Icellnet.show"]], "subset_intersection() (pypath.core.annot.icellnet method)": [[48, "pypath.core.annot.Icellnet.subset_intersection"]], "to_array() (pypath.core.annot.icellnet method)": [[48, "pypath.core.annot.Icellnet.to_array"]], "to_bool_array() (pypath.core.annot.icellnet method)": [[48, "pypath.core.annot.Icellnet.to_bool_array"]], "to_set() (pypath.core.annot.icellnet method)": [[48, "pypath.core.annot.Icellnet.to_set"]], "icellnetcomplex (class in pypath.core.annot)": [[49, "pypath.core.annot.IcellnetComplex"]], "__init__() (pypath.core.annot.icellnetcomplex method)": [[49, "pypath.core.annot.IcellnetComplex.__init__"]], "add_complexes_by_inference() (pypath.core.annot.icellnetcomplex method)": [[49, "pypath.core.annot.IcellnetComplex.add_complexes_by_inference"]], "all_complexes() (pypath.core.annot.icellnetcomplex method)": [[49, "pypath.core.annot.IcellnetComplex.all_complexes"]], "all_entities() (pypath.core.annot.icellnetcomplex method)": [[49, "pypath.core.annot.IcellnetComplex.all_entities"]], "all_mirnas() (pypath.core.annot.icellnetcomplex method)": [[49, "pypath.core.annot.IcellnetComplex.all_mirnas"]], "all_proteins() (pypath.core.annot.icellnetcomplex method)": [[49, "pypath.core.annot.IcellnetComplex.all_proteins"]], "all_refs() (pypath.core.annot.icellnetcomplex method)": [[49, "pypath.core.annot.IcellnetComplex.all_refs"]], "annotate_complex() (pypath.core.annot.icellnetcomplex method)": [[49, "pypath.core.annot.IcellnetComplex.annotate_complex"]], "browse() (pypath.core.annot.icellnetcomplex method)": [[49, "pypath.core.annot.IcellnetComplex.browse"]], "complex_inference() (pypath.core.annot.icellnetcomplex method)": [[49, "pypath.core.annot.IcellnetComplex.complex_inference"]], "coverage() (pypath.core.annot.icellnetcomplex method)": [[49, "pypath.core.annot.IcellnetComplex.coverage"]], "curation_effort() (pypath.core.annot.icellnetcomplex method)": [[49, "pypath.core.annot.IcellnetComplex.curation_effort"]], "get_names() (pypath.core.annot.icellnetcomplex method)": [[49, "pypath.core.annot.IcellnetComplex.get_names"]], "get_reference_set() (pypath.core.annot.icellnetcomplex static method)": [[49, "pypath.core.annot.IcellnetComplex.get_reference_set"]], "get_subset() (pypath.core.annot.icellnetcomplex method)": [[49, "pypath.core.annot.IcellnetComplex.get_subset"]], "get_subset_bool_array() (pypath.core.annot.icellnetcomplex method)": [[49, "pypath.core.annot.IcellnetComplex.get_subset_bool_array"]], "get_values() (pypath.core.annot.icellnetcomplex method)": [[49, "pypath.core.annot.IcellnetComplex.get_values"]], "labels() (pypath.core.annot.icellnetcomplex method)": [[49, "pypath.core.annot.IcellnetComplex.labels"]], "load() (pypath.core.annot.icellnetcomplex method)": [[49, "pypath.core.annot.IcellnetComplex.load"]], "load_data() (pypath.core.annot.icellnetcomplex method)": [[49, "pypath.core.annot.IcellnetComplex.load_data"]], "load_proteins() (pypath.core.annot.icellnetcomplex method)": [[49, "pypath.core.annot.IcellnetComplex.load_proteins"]], "make_df() (pypath.core.annot.icellnetcomplex method)": [[49, "pypath.core.annot.IcellnetComplex.make_df"]], "numof_entities() (pypath.core.annot.icellnetcomplex method)": [[49, "pypath.core.annot.IcellnetComplex.numof_entities"]], "numof_records() (pypath.core.annot.icellnetcomplex method)": [[49, "pypath.core.annot.IcellnetComplex.numof_records"]], "numof_references() (pypath.core.annot.icellnetcomplex method)": [[49, "pypath.core.annot.IcellnetComplex.numof_references"]], "process() (pypath.core.annot.icellnetcomplex method)": [[49, "pypath.core.annot.IcellnetComplex.process"]], "reload() (pypath.core.annot.icellnetcomplex method)": [[49, "pypath.core.annot.IcellnetComplex.reload"]], "select() (pypath.core.annot.icellnetcomplex method)": [[49, "pypath.core.annot.IcellnetComplex.select"]], "set_method() (pypath.core.annot.icellnetcomplex method)": [[49, "pypath.core.annot.IcellnetComplex.set_method"]], "set_reference_set() (pypath.core.annot.icellnetcomplex method)": [[49, "pypath.core.annot.IcellnetComplex.set_reference_set"]], "show() (pypath.core.annot.icellnetcomplex method)": [[49, "pypath.core.annot.IcellnetComplex.show"]], "subset_intersection() (pypath.core.annot.icellnetcomplex method)": [[49, "pypath.core.annot.IcellnetComplex.subset_intersection"]], "to_array() (pypath.core.annot.icellnetcomplex method)": [[49, "pypath.core.annot.IcellnetComplex.to_array"]], "to_bool_array() (pypath.core.annot.icellnetcomplex method)": [[49, "pypath.core.annot.IcellnetComplex.to_bool_array"]], "to_set() (pypath.core.annot.icellnetcomplex method)": [[49, "pypath.core.annot.IcellnetComplex.to_set"]], "integrins (class in pypath.core.annot)": [[50, "pypath.core.annot.Integrins"]], "__init__() (pypath.core.annot.integrins method)": [[50, "pypath.core.annot.Integrins.__init__"]], "add_complexes_by_inference() (pypath.core.annot.integrins method)": [[50, "pypath.core.annot.Integrins.add_complexes_by_inference"]], "all_complexes() (pypath.core.annot.integrins method)": [[50, "pypath.core.annot.Integrins.all_complexes"]], "all_entities() (pypath.core.annot.integrins method)": [[50, "pypath.core.annot.Integrins.all_entities"]], "all_mirnas() (pypath.core.annot.integrins method)": [[50, "pypath.core.annot.Integrins.all_mirnas"]], "all_proteins() (pypath.core.annot.integrins method)": [[50, "pypath.core.annot.Integrins.all_proteins"]], "all_refs() (pypath.core.annot.integrins method)": [[50, "pypath.core.annot.Integrins.all_refs"]], "annotate_complex() (pypath.core.annot.integrins method)": [[50, "pypath.core.annot.Integrins.annotate_complex"]], "browse() (pypath.core.annot.integrins method)": [[50, "pypath.core.annot.Integrins.browse"]], "complex_inference() (pypath.core.annot.integrins method)": [[50, "pypath.core.annot.Integrins.complex_inference"]], "coverage() (pypath.core.annot.integrins method)": [[50, "pypath.core.annot.Integrins.coverage"]], "curation_effort() (pypath.core.annot.integrins method)": [[50, "pypath.core.annot.Integrins.curation_effort"]], "get_names() (pypath.core.annot.integrins method)": [[50, "pypath.core.annot.Integrins.get_names"]], "get_reference_set() (pypath.core.annot.integrins static method)": [[50, "pypath.core.annot.Integrins.get_reference_set"]], "get_subset() (pypath.core.annot.integrins method)": [[50, "pypath.core.annot.Integrins.get_subset"]], "get_subset_bool_array() (pypath.core.annot.integrins method)": [[50, "pypath.core.annot.Integrins.get_subset_bool_array"]], "get_values() (pypath.core.annot.integrins method)": [[50, "pypath.core.annot.Integrins.get_values"]], "labels() (pypath.core.annot.integrins method)": [[50, "pypath.core.annot.Integrins.labels"]], "load() (pypath.core.annot.integrins method)": [[50, "pypath.core.annot.Integrins.load"]], "load_data() (pypath.core.annot.integrins method)": [[50, "pypath.core.annot.Integrins.load_data"]], "load_proteins() (pypath.core.annot.integrins method)": [[50, "pypath.core.annot.Integrins.load_proteins"]], "make_df() (pypath.core.annot.integrins method)": [[50, "pypath.core.annot.Integrins.make_df"]], "numof_entities() (pypath.core.annot.integrins method)": [[50, "pypath.core.annot.Integrins.numof_entities"]], "numof_records() (pypath.core.annot.integrins method)": [[50, "pypath.core.annot.Integrins.numof_records"]], "numof_references() (pypath.core.annot.integrins method)": [[50, "pypath.core.annot.Integrins.numof_references"]], "process() (pypath.core.annot.integrins method)": [[50, "pypath.core.annot.Integrins.process"]], "reload() (pypath.core.annot.integrins method)": [[50, "pypath.core.annot.Integrins.reload"]], "select() (pypath.core.annot.integrins method)": [[50, "pypath.core.annot.Integrins.select"]], "set_method() (pypath.core.annot.integrins method)": [[50, "pypath.core.annot.Integrins.set_method"]], "set_reference_set() (pypath.core.annot.integrins method)": [[50, "pypath.core.annot.Integrins.set_reference_set"]], "show() (pypath.core.annot.integrins method)": [[50, "pypath.core.annot.Integrins.show"]], "subset_intersection() (pypath.core.annot.integrins method)": [[50, "pypath.core.annot.Integrins.subset_intersection"]], "to_array() (pypath.core.annot.integrins method)": [[50, "pypath.core.annot.Integrins.to_array"]], "to_bool_array() (pypath.core.annot.integrins method)": [[50, "pypath.core.annot.Integrins.to_bool_array"]], "to_set() (pypath.core.annot.integrins method)": [[50, "pypath.core.annot.Integrins.to_set"]], "interpro (class in pypath.core.annot)": [[51, "pypath.core.annot.InterPro"]], "__init__() (pypath.core.annot.interpro method)": [[51, "pypath.core.annot.InterPro.__init__"]], "add_complexes_by_inference() (pypath.core.annot.interpro method)": [[51, "pypath.core.annot.InterPro.add_complexes_by_inference"]], "all_complexes() (pypath.core.annot.interpro method)": [[51, "pypath.core.annot.InterPro.all_complexes"]], "all_entities() (pypath.core.annot.interpro method)": [[51, "pypath.core.annot.InterPro.all_entities"]], "all_mirnas() (pypath.core.annot.interpro method)": [[51, "pypath.core.annot.InterPro.all_mirnas"]], "all_proteins() (pypath.core.annot.interpro method)": [[51, "pypath.core.annot.InterPro.all_proteins"]], "all_refs() (pypath.core.annot.interpro method)": [[51, "pypath.core.annot.InterPro.all_refs"]], "annotate_complex() (pypath.core.annot.interpro method)": [[51, "pypath.core.annot.InterPro.annotate_complex"]], "browse() (pypath.core.annot.interpro method)": [[51, "pypath.core.annot.InterPro.browse"]], "complex_inference() (pypath.core.annot.interpro method)": [[51, "pypath.core.annot.InterPro.complex_inference"]], "coverage() (pypath.core.annot.interpro method)": [[51, "pypath.core.annot.InterPro.coverage"]], "curation_effort() (pypath.core.annot.interpro method)": [[51, "pypath.core.annot.InterPro.curation_effort"]], "get_names() (pypath.core.annot.interpro method)": [[51, "pypath.core.annot.InterPro.get_names"]], "get_reference_set() (pypath.core.annot.interpro static method)": [[51, "pypath.core.annot.InterPro.get_reference_set"]], "get_subset() (pypath.core.annot.interpro method)": [[51, "pypath.core.annot.InterPro.get_subset"]], "get_subset_bool_array() (pypath.core.annot.interpro method)": [[51, "pypath.core.annot.InterPro.get_subset_bool_array"]], "get_values() (pypath.core.annot.interpro method)": [[51, "pypath.core.annot.InterPro.get_values"]], "labels() (pypath.core.annot.interpro method)": [[51, "pypath.core.annot.InterPro.labels"]], "load() (pypath.core.annot.interpro method)": [[51, "pypath.core.annot.InterPro.load"]], "load_data() (pypath.core.annot.interpro method)": [[51, "pypath.core.annot.InterPro.load_data"]], "load_proteins() (pypath.core.annot.interpro method)": [[51, "pypath.core.annot.InterPro.load_proteins"]], "make_df() (pypath.core.annot.interpro method)": [[51, "pypath.core.annot.InterPro.make_df"]], "numof_entities() (pypath.core.annot.interpro method)": [[51, "pypath.core.annot.InterPro.numof_entities"]], "numof_records() (pypath.core.annot.interpro method)": [[51, "pypath.core.annot.InterPro.numof_records"]], "numof_references() (pypath.core.annot.interpro method)": [[51, "pypath.core.annot.InterPro.numof_references"]], "process() (pypath.core.annot.interpro method)": [[51, "pypath.core.annot.InterPro.process"]], "reload() (pypath.core.annot.interpro method)": [[51, "pypath.core.annot.InterPro.reload"]], "select() (pypath.core.annot.interpro method)": [[51, "pypath.core.annot.InterPro.select"]], "set_method() (pypath.core.annot.interpro method)": [[51, "pypath.core.annot.InterPro.set_method"]], "set_reference_set() (pypath.core.annot.interpro method)": [[51, "pypath.core.annot.InterPro.set_reference_set"]], "show() (pypath.core.annot.interpro method)": [[51, "pypath.core.annot.InterPro.show"]], "subset_intersection() (pypath.core.annot.interpro method)": [[51, "pypath.core.annot.InterPro.subset_intersection"]], "to_array() (pypath.core.annot.interpro method)": [[51, "pypath.core.annot.InterPro.to_array"]], "to_bool_array() (pypath.core.annot.interpro method)": [[51, "pypath.core.annot.InterPro.to_bool_array"]], "to_set() (pypath.core.annot.interpro method)": [[51, "pypath.core.annot.InterPro.to_set"]], "intogen (class in pypath.core.annot)": [[52, "pypath.core.annot.Intogen"]], "__init__() (pypath.core.annot.intogen method)": [[52, "pypath.core.annot.Intogen.__init__"]], "add_complexes_by_inference() (pypath.core.annot.intogen method)": [[52, "pypath.core.annot.Intogen.add_complexes_by_inference"]], "all_complexes() (pypath.core.annot.intogen method)": [[52, "pypath.core.annot.Intogen.all_complexes"]], "all_entities() (pypath.core.annot.intogen method)": [[52, "pypath.core.annot.Intogen.all_entities"]], "all_mirnas() (pypath.core.annot.intogen method)": [[52, "pypath.core.annot.Intogen.all_mirnas"]], "all_proteins() (pypath.core.annot.intogen method)": [[52, "pypath.core.annot.Intogen.all_proteins"]], "all_refs() (pypath.core.annot.intogen method)": [[52, "pypath.core.annot.Intogen.all_refs"]], "annotate_complex() (pypath.core.annot.intogen method)": [[52, "pypath.core.annot.Intogen.annotate_complex"]], "browse() (pypath.core.annot.intogen method)": [[52, "pypath.core.annot.Intogen.browse"]], "complex_inference() (pypath.core.annot.intogen method)": [[52, "pypath.core.annot.Intogen.complex_inference"]], "coverage() (pypath.core.annot.intogen method)": [[52, "pypath.core.annot.Intogen.coverage"]], "curation_effort() (pypath.core.annot.intogen method)": [[52, "pypath.core.annot.Intogen.curation_effort"]], "get_names() (pypath.core.annot.intogen method)": [[52, "pypath.core.annot.Intogen.get_names"]], "get_reference_set() (pypath.core.annot.intogen static method)": [[52, "pypath.core.annot.Intogen.get_reference_set"]], "get_subset() (pypath.core.annot.intogen method)": [[52, "pypath.core.annot.Intogen.get_subset"]], "get_subset_bool_array() (pypath.core.annot.intogen method)": [[52, "pypath.core.annot.Intogen.get_subset_bool_array"]], "get_values() (pypath.core.annot.intogen method)": [[52, "pypath.core.annot.Intogen.get_values"]], "labels() (pypath.core.annot.intogen method)": [[52, "pypath.core.annot.Intogen.labels"]], "load() (pypath.core.annot.intogen method)": [[52, "pypath.core.annot.Intogen.load"]], "load_data() (pypath.core.annot.intogen method)": [[52, "pypath.core.annot.Intogen.load_data"]], "load_proteins() (pypath.core.annot.intogen method)": [[52, "pypath.core.annot.Intogen.load_proteins"]], "make_df() (pypath.core.annot.intogen method)": [[52, "pypath.core.annot.Intogen.make_df"]], "numof_entities() (pypath.core.annot.intogen method)": [[52, "pypath.core.annot.Intogen.numof_entities"]], "numof_records() (pypath.core.annot.intogen method)": [[52, "pypath.core.annot.Intogen.numof_records"]], "numof_references() (pypath.core.annot.intogen method)": [[52, "pypath.core.annot.Intogen.numof_references"]], "process() (pypath.core.annot.intogen method)": [[52, "pypath.core.annot.Intogen.process"]], "reload() (pypath.core.annot.intogen method)": [[52, "pypath.core.annot.Intogen.reload"]], "select() (pypath.core.annot.intogen method)": [[52, "pypath.core.annot.Intogen.select"]], "set_method() (pypath.core.annot.intogen method)": [[52, "pypath.core.annot.Intogen.set_method"]], "set_reference_set() (pypath.core.annot.intogen method)": [[52, "pypath.core.annot.Intogen.set_reference_set"]], "show() (pypath.core.annot.intogen method)": [[52, "pypath.core.annot.Intogen.show"]], "subset_intersection() (pypath.core.annot.intogen method)": [[52, "pypath.core.annot.Intogen.subset_intersection"]], "to_array() (pypath.core.annot.intogen method)": [[52, "pypath.core.annot.Intogen.to_array"]], "to_bool_array() (pypath.core.annot.intogen method)": [[52, "pypath.core.annot.Intogen.to_bool_array"]], "to_set() (pypath.core.annot.intogen method)": [[52, "pypath.core.annot.Intogen.to_set"]], "italk (class in pypath.core.annot)": [[53, "pypath.core.annot.Italk"]], "__init__() (pypath.core.annot.italk method)": [[53, "pypath.core.annot.Italk.__init__"]], "add_complexes_by_inference() (pypath.core.annot.italk method)": [[53, "pypath.core.annot.Italk.add_complexes_by_inference"]], "all_complexes() (pypath.core.annot.italk method)": [[53, "pypath.core.annot.Italk.all_complexes"]], "all_entities() (pypath.core.annot.italk method)": [[53, "pypath.core.annot.Italk.all_entities"]], "all_mirnas() (pypath.core.annot.italk method)": [[53, "pypath.core.annot.Italk.all_mirnas"]], "all_proteins() (pypath.core.annot.italk method)": [[53, "pypath.core.annot.Italk.all_proteins"]], "all_refs() (pypath.core.annot.italk method)": [[53, "pypath.core.annot.Italk.all_refs"]], "annotate_complex() (pypath.core.annot.italk method)": [[53, "pypath.core.annot.Italk.annotate_complex"]], "browse() (pypath.core.annot.italk method)": [[53, "pypath.core.annot.Italk.browse"]], "complex_inference() (pypath.core.annot.italk method)": [[53, "pypath.core.annot.Italk.complex_inference"]], "coverage() (pypath.core.annot.italk method)": [[53, "pypath.core.annot.Italk.coverage"]], "curation_effort() (pypath.core.annot.italk method)": [[53, "pypath.core.annot.Italk.curation_effort"]], "get_names() (pypath.core.annot.italk method)": [[53, "pypath.core.annot.Italk.get_names"]], "get_reference_set() (pypath.core.annot.italk static method)": [[53, "pypath.core.annot.Italk.get_reference_set"]], "get_subset() (pypath.core.annot.italk method)": [[53, "pypath.core.annot.Italk.get_subset"]], "get_subset_bool_array() (pypath.core.annot.italk method)": [[53, "pypath.core.annot.Italk.get_subset_bool_array"]], "get_values() (pypath.core.annot.italk method)": [[53, "pypath.core.annot.Italk.get_values"]], "labels() (pypath.core.annot.italk method)": [[53, "pypath.core.annot.Italk.labels"]], "load() (pypath.core.annot.italk method)": [[53, "pypath.core.annot.Italk.load"]], "load_data() (pypath.core.annot.italk method)": [[53, "pypath.core.annot.Italk.load_data"]], "load_proteins() (pypath.core.annot.italk method)": [[53, "pypath.core.annot.Italk.load_proteins"]], "make_df() (pypath.core.annot.italk method)": [[53, "pypath.core.annot.Italk.make_df"]], "numof_entities() (pypath.core.annot.italk method)": [[53, "pypath.core.annot.Italk.numof_entities"]], "numof_records() (pypath.core.annot.italk method)": [[53, "pypath.core.annot.Italk.numof_records"]], "numof_references() (pypath.core.annot.italk method)": [[53, "pypath.core.annot.Italk.numof_references"]], "process() (pypath.core.annot.italk method)": [[53, "pypath.core.annot.Italk.process"]], "reload() (pypath.core.annot.italk method)": [[53, "pypath.core.annot.Italk.reload"]], "select() (pypath.core.annot.italk method)": [[53, "pypath.core.annot.Italk.select"]], "set_method() (pypath.core.annot.italk method)": [[53, "pypath.core.annot.Italk.set_method"]], "set_reference_set() (pypath.core.annot.italk method)": [[53, "pypath.core.annot.Italk.set_reference_set"]], "show() (pypath.core.annot.italk method)": [[53, "pypath.core.annot.Italk.show"]], "subset_intersection() (pypath.core.annot.italk method)": [[53, "pypath.core.annot.Italk.subset_intersection"]], "to_array() (pypath.core.annot.italk method)": [[53, "pypath.core.annot.Italk.to_array"]], "to_bool_array() (pypath.core.annot.italk method)": [[53, "pypath.core.annot.Italk.to_bool_array"]], "to_set() (pypath.core.annot.italk method)": [[53, "pypath.core.annot.Italk.to_set"]], "keggpathways (class in pypath.core.annot)": [[54, "pypath.core.annot.KeggPathways"]], "__init__() (pypath.core.annot.keggpathways method)": [[54, "pypath.core.annot.KeggPathways.__init__"]], "add_complexes_by_inference() (pypath.core.annot.keggpathways method)": [[54, "pypath.core.annot.KeggPathways.add_complexes_by_inference"]], "all_complexes() (pypath.core.annot.keggpathways method)": [[54, "pypath.core.annot.KeggPathways.all_complexes"]], "all_entities() (pypath.core.annot.keggpathways method)": [[54, "pypath.core.annot.KeggPathways.all_entities"]], "all_mirnas() (pypath.core.annot.keggpathways method)": [[54, "pypath.core.annot.KeggPathways.all_mirnas"]], "all_proteins() (pypath.core.annot.keggpathways method)": [[54, "pypath.core.annot.KeggPathways.all_proteins"]], "all_refs() (pypath.core.annot.keggpathways method)": [[54, "pypath.core.annot.KeggPathways.all_refs"]], "annotate_complex() (pypath.core.annot.keggpathways method)": [[54, "pypath.core.annot.KeggPathways.annotate_complex"]], "browse() (pypath.core.annot.keggpathways method)": [[54, "pypath.core.annot.KeggPathways.browse"]], "complex_inference() (pypath.core.annot.keggpathways method)": [[54, "pypath.core.annot.KeggPathways.complex_inference"]], "coverage() (pypath.core.annot.keggpathways method)": [[54, "pypath.core.annot.KeggPathways.coverage"]], "curation_effort() (pypath.core.annot.keggpathways method)": [[54, "pypath.core.annot.KeggPathways.curation_effort"]], "get_names() (pypath.core.annot.keggpathways method)": [[54, "pypath.core.annot.KeggPathways.get_names"]], "get_reference_set() (pypath.core.annot.keggpathways static method)": [[54, "pypath.core.annot.KeggPathways.get_reference_set"]], "get_subset() (pypath.core.annot.keggpathways method)": [[54, "pypath.core.annot.KeggPathways.get_subset"]], "get_subset_bool_array() (pypath.core.annot.keggpathways method)": [[54, "pypath.core.annot.KeggPathways.get_subset_bool_array"]], "get_values() (pypath.core.annot.keggpathways method)": [[54, "pypath.core.annot.KeggPathways.get_values"]], "labels() (pypath.core.annot.keggpathways method)": [[54, "pypath.core.annot.KeggPathways.labels"]], "load() (pypath.core.annot.keggpathways method)": [[54, "pypath.core.annot.KeggPathways.load"]], "load_data() (pypath.core.annot.keggpathways method)": [[54, "pypath.core.annot.KeggPathways.load_data"]], "load_proteins() (pypath.core.annot.keggpathways method)": [[54, "pypath.core.annot.KeggPathways.load_proteins"]], "make_df() (pypath.core.annot.keggpathways method)": [[54, "pypath.core.annot.KeggPathways.make_df"]], "numof_entities() (pypath.core.annot.keggpathways method)": [[54, "pypath.core.annot.KeggPathways.numof_entities"]], "numof_records() (pypath.core.annot.keggpathways method)": [[54, "pypath.core.annot.KeggPathways.numof_records"]], "numof_references() (pypath.core.annot.keggpathways method)": [[54, "pypath.core.annot.KeggPathways.numof_references"]], "process() (pypath.core.annot.keggpathways method)": [[54, "pypath.core.annot.KeggPathways.process"]], "reload() (pypath.core.annot.keggpathways method)": [[54, "pypath.core.annot.KeggPathways.reload"]], "select() (pypath.core.annot.keggpathways method)": [[54, "pypath.core.annot.KeggPathways.select"]], "set_method() (pypath.core.annot.keggpathways method)": [[54, "pypath.core.annot.KeggPathways.set_method"]], "set_reference_set() (pypath.core.annot.keggpathways method)": [[54, "pypath.core.annot.KeggPathways.set_reference_set"]], "show() (pypath.core.annot.keggpathways method)": [[54, "pypath.core.annot.KeggPathways.show"]], "subset_intersection() (pypath.core.annot.keggpathways method)": [[54, "pypath.core.annot.KeggPathways.subset_intersection"]], "to_array() (pypath.core.annot.keggpathways method)": [[54, "pypath.core.annot.KeggPathways.to_array"]], "to_bool_array() (pypath.core.annot.keggpathways method)": [[54, "pypath.core.annot.KeggPathways.to_bool_array"]], "to_set() (pypath.core.annot.keggpathways method)": [[54, "pypath.core.annot.KeggPathways.to_set"]], "keggpathwayspc (class in pypath.core.annot)": [[55, "pypath.core.annot.KeggPathwaysPC"]], "__init__() (pypath.core.annot.keggpathwayspc method)": [[55, "pypath.core.annot.KeggPathwaysPC.__init__"]], "add_complexes_by_inference() (pypath.core.annot.keggpathwayspc method)": [[55, "pypath.core.annot.KeggPathwaysPC.add_complexes_by_inference"]], "all_complexes() (pypath.core.annot.keggpathwayspc method)": [[55, "pypath.core.annot.KeggPathwaysPC.all_complexes"]], "all_entities() (pypath.core.annot.keggpathwayspc method)": [[55, "pypath.core.annot.KeggPathwaysPC.all_entities"]], "all_mirnas() (pypath.core.annot.keggpathwayspc method)": [[55, "pypath.core.annot.KeggPathwaysPC.all_mirnas"]], "all_proteins() (pypath.core.annot.keggpathwayspc method)": [[55, "pypath.core.annot.KeggPathwaysPC.all_proteins"]], "all_refs() (pypath.core.annot.keggpathwayspc method)": [[55, "pypath.core.annot.KeggPathwaysPC.all_refs"]], "annotate_complex() (pypath.core.annot.keggpathwayspc method)": [[55, "pypath.core.annot.KeggPathwaysPC.annotate_complex"]], "browse() (pypath.core.annot.keggpathwayspc method)": [[55, "pypath.core.annot.KeggPathwaysPC.browse"]], "complex_inference() (pypath.core.annot.keggpathwayspc method)": [[55, "pypath.core.annot.KeggPathwaysPC.complex_inference"]], "coverage() (pypath.core.annot.keggpathwayspc method)": [[55, "pypath.core.annot.KeggPathwaysPC.coverage"]], "curation_effort() (pypath.core.annot.keggpathwayspc method)": [[55, "pypath.core.annot.KeggPathwaysPC.curation_effort"]], "get_names() (pypath.core.annot.keggpathwayspc method)": [[55, "pypath.core.annot.KeggPathwaysPC.get_names"]], "get_reference_set() (pypath.core.annot.keggpathwayspc static method)": [[55, "pypath.core.annot.KeggPathwaysPC.get_reference_set"]], "get_subset() (pypath.core.annot.keggpathwayspc method)": [[55, "pypath.core.annot.KeggPathwaysPC.get_subset"]], "get_subset_bool_array() (pypath.core.annot.keggpathwayspc method)": [[55, "pypath.core.annot.KeggPathwaysPC.get_subset_bool_array"]], "get_values() (pypath.core.annot.keggpathwayspc method)": [[55, "pypath.core.annot.KeggPathwaysPC.get_values"]], "labels() (pypath.core.annot.keggpathwayspc method)": [[55, "pypath.core.annot.KeggPathwaysPC.labels"]], "load() (pypath.core.annot.keggpathwayspc method)": [[55, "pypath.core.annot.KeggPathwaysPC.load"]], "load_data() (pypath.core.annot.keggpathwayspc method)": [[55, "pypath.core.annot.KeggPathwaysPC.load_data"]], "load_proteins() (pypath.core.annot.keggpathwayspc method)": [[55, "pypath.core.annot.KeggPathwaysPC.load_proteins"]], "make_df() (pypath.core.annot.keggpathwayspc method)": [[55, "pypath.core.annot.KeggPathwaysPC.make_df"]], "numof_entities() (pypath.core.annot.keggpathwayspc method)": [[55, "pypath.core.annot.KeggPathwaysPC.numof_entities"]], "numof_records() (pypath.core.annot.keggpathwayspc method)": [[55, "pypath.core.annot.KeggPathwaysPC.numof_records"]], "numof_references() (pypath.core.annot.keggpathwayspc method)": [[55, "pypath.core.annot.KeggPathwaysPC.numof_references"]], "process() (pypath.core.annot.keggpathwayspc method)": [[55, "pypath.core.annot.KeggPathwaysPC.process"]], "reload() (pypath.core.annot.keggpathwayspc method)": [[55, "pypath.core.annot.KeggPathwaysPC.reload"]], "select() (pypath.core.annot.keggpathwayspc method)": [[55, "pypath.core.annot.KeggPathwaysPC.select"]], "set_method() (pypath.core.annot.keggpathwayspc method)": [[55, "pypath.core.annot.KeggPathwaysPC.set_method"]], "set_reference_set() (pypath.core.annot.keggpathwayspc method)": [[55, "pypath.core.annot.KeggPathwaysPC.set_reference_set"]], "show() (pypath.core.annot.keggpathwayspc method)": [[55, "pypath.core.annot.KeggPathwaysPC.show"]], "subset_intersection() (pypath.core.annot.keggpathwayspc method)": [[55, "pypath.core.annot.KeggPathwaysPC.subset_intersection"]], "to_array() (pypath.core.annot.keggpathwayspc method)": [[55, "pypath.core.annot.KeggPathwaysPC.to_array"]], "to_bool_array() (pypath.core.annot.keggpathwayspc method)": [[55, "pypath.core.annot.KeggPathwaysPC.to_bool_array"]], "to_set() (pypath.core.annot.keggpathwayspc method)": [[55, "pypath.core.annot.KeggPathwaysPC.to_set"]], "kinasedotcom (class in pypath.core.annot)": [[56, "pypath.core.annot.Kinasedotcom"]], "__init__() (pypath.core.annot.kinasedotcom method)": [[56, "pypath.core.annot.Kinasedotcom.__init__"]], "add_complexes_by_inference() (pypath.core.annot.kinasedotcom method)": [[56, "pypath.core.annot.Kinasedotcom.add_complexes_by_inference"]], "all_complexes() (pypath.core.annot.kinasedotcom method)": [[56, "pypath.core.annot.Kinasedotcom.all_complexes"]], "all_entities() (pypath.core.annot.kinasedotcom method)": [[56, "pypath.core.annot.Kinasedotcom.all_entities"]], "all_mirnas() (pypath.core.annot.kinasedotcom method)": [[56, "pypath.core.annot.Kinasedotcom.all_mirnas"]], "all_proteins() (pypath.core.annot.kinasedotcom method)": [[56, "pypath.core.annot.Kinasedotcom.all_proteins"]], "all_refs() (pypath.core.annot.kinasedotcom method)": [[56, "pypath.core.annot.Kinasedotcom.all_refs"]], "annotate_complex() (pypath.core.annot.kinasedotcom method)": [[56, "pypath.core.annot.Kinasedotcom.annotate_complex"]], "browse() (pypath.core.annot.kinasedotcom method)": [[56, "pypath.core.annot.Kinasedotcom.browse"]], "complex_inference() (pypath.core.annot.kinasedotcom method)": [[56, "pypath.core.annot.Kinasedotcom.complex_inference"]], "coverage() (pypath.core.annot.kinasedotcom method)": [[56, "pypath.core.annot.Kinasedotcom.coverage"]], "curation_effort() (pypath.core.annot.kinasedotcom method)": [[56, "pypath.core.annot.Kinasedotcom.curation_effort"]], "get_names() (pypath.core.annot.kinasedotcom method)": [[56, "pypath.core.annot.Kinasedotcom.get_names"]], "get_reference_set() (pypath.core.annot.kinasedotcom static method)": [[56, "pypath.core.annot.Kinasedotcom.get_reference_set"]], "get_subset() (pypath.core.annot.kinasedotcom method)": [[56, "pypath.core.annot.Kinasedotcom.get_subset"]], "get_subset_bool_array() (pypath.core.annot.kinasedotcom method)": [[56, "pypath.core.annot.Kinasedotcom.get_subset_bool_array"]], "get_values() (pypath.core.annot.kinasedotcom method)": [[56, "pypath.core.annot.Kinasedotcom.get_values"]], "labels() (pypath.core.annot.kinasedotcom method)": [[56, "pypath.core.annot.Kinasedotcom.labels"]], "load() (pypath.core.annot.kinasedotcom method)": [[56, "pypath.core.annot.Kinasedotcom.load"]], "load_data() (pypath.core.annot.kinasedotcom method)": [[56, "pypath.core.annot.Kinasedotcom.load_data"]], "load_proteins() (pypath.core.annot.kinasedotcom method)": [[56, "pypath.core.annot.Kinasedotcom.load_proteins"]], "make_df() (pypath.core.annot.kinasedotcom method)": [[56, "pypath.core.annot.Kinasedotcom.make_df"]], "numof_entities() (pypath.core.annot.kinasedotcom method)": [[56, "pypath.core.annot.Kinasedotcom.numof_entities"]], "numof_records() (pypath.core.annot.kinasedotcom method)": [[56, "pypath.core.annot.Kinasedotcom.numof_records"]], "numof_references() (pypath.core.annot.kinasedotcom method)": [[56, "pypath.core.annot.Kinasedotcom.numof_references"]], "process() (pypath.core.annot.kinasedotcom method)": [[56, "pypath.core.annot.Kinasedotcom.process"]], "reload() (pypath.core.annot.kinasedotcom method)": [[56, "pypath.core.annot.Kinasedotcom.reload"]], "select() (pypath.core.annot.kinasedotcom method)": [[56, "pypath.core.annot.Kinasedotcom.select"]], "set_method() (pypath.core.annot.kinasedotcom method)": [[56, "pypath.core.annot.Kinasedotcom.set_method"]], "set_reference_set() (pypath.core.annot.kinasedotcom method)": [[56, "pypath.core.annot.Kinasedotcom.set_reference_set"]], "show() (pypath.core.annot.kinasedotcom method)": [[56, "pypath.core.annot.Kinasedotcom.show"]], "subset_intersection() (pypath.core.annot.kinasedotcom method)": [[56, "pypath.core.annot.Kinasedotcom.subset_intersection"]], "to_array() (pypath.core.annot.kinasedotcom method)": [[56, "pypath.core.annot.Kinasedotcom.to_array"]], "to_bool_array() (pypath.core.annot.kinasedotcom method)": [[56, "pypath.core.annot.Kinasedotcom.to_bool_array"]], "to_set() (pypath.core.annot.kinasedotcom method)": [[56, "pypath.core.annot.Kinasedotcom.to_set"]], "kirouac2010 (class in pypath.core.annot)": [[57, "pypath.core.annot.Kirouac2010"]], "__init__() (pypath.core.annot.kirouac2010 method)": [[57, "pypath.core.annot.Kirouac2010.__init__"]], "add_complexes_by_inference() (pypath.core.annot.kirouac2010 method)": [[57, "pypath.core.annot.Kirouac2010.add_complexes_by_inference"]], "all_complexes() (pypath.core.annot.kirouac2010 method)": [[57, "pypath.core.annot.Kirouac2010.all_complexes"]], "all_entities() (pypath.core.annot.kirouac2010 method)": [[57, "pypath.core.annot.Kirouac2010.all_entities"]], "all_mirnas() (pypath.core.annot.kirouac2010 method)": [[57, "pypath.core.annot.Kirouac2010.all_mirnas"]], "all_proteins() (pypath.core.annot.kirouac2010 method)": [[57, "pypath.core.annot.Kirouac2010.all_proteins"]], "all_refs() (pypath.core.annot.kirouac2010 method)": [[57, "pypath.core.annot.Kirouac2010.all_refs"]], "annotate_complex() (pypath.core.annot.kirouac2010 method)": [[57, "pypath.core.annot.Kirouac2010.annotate_complex"]], "browse() (pypath.core.annot.kirouac2010 method)": [[57, "pypath.core.annot.Kirouac2010.browse"]], "complex_inference() (pypath.core.annot.kirouac2010 method)": [[57, "pypath.core.annot.Kirouac2010.complex_inference"]], "coverage() (pypath.core.annot.kirouac2010 method)": [[57, "pypath.core.annot.Kirouac2010.coverage"]], "curation_effort() (pypath.core.annot.kirouac2010 method)": [[57, "pypath.core.annot.Kirouac2010.curation_effort"]], "get_names() (pypath.core.annot.kirouac2010 method)": [[57, "pypath.core.annot.Kirouac2010.get_names"]], "get_reference_set() (pypath.core.annot.kirouac2010 static method)": [[57, "pypath.core.annot.Kirouac2010.get_reference_set"]], "get_subset() (pypath.core.annot.kirouac2010 method)": [[57, "pypath.core.annot.Kirouac2010.get_subset"]], "get_subset_bool_array() (pypath.core.annot.kirouac2010 method)": [[57, "pypath.core.annot.Kirouac2010.get_subset_bool_array"]], "get_values() (pypath.core.annot.kirouac2010 method)": [[57, "pypath.core.annot.Kirouac2010.get_values"]], "labels() (pypath.core.annot.kirouac2010 method)": [[57, "pypath.core.annot.Kirouac2010.labels"]], "load() (pypath.core.annot.kirouac2010 method)": [[57, "pypath.core.annot.Kirouac2010.load"]], "load_data() (pypath.core.annot.kirouac2010 method)": [[57, "pypath.core.annot.Kirouac2010.load_data"]], "load_proteins() (pypath.core.annot.kirouac2010 method)": [[57, "pypath.core.annot.Kirouac2010.load_proteins"]], "make_df() (pypath.core.annot.kirouac2010 method)": [[57, "pypath.core.annot.Kirouac2010.make_df"]], "numof_entities() (pypath.core.annot.kirouac2010 method)": [[57, "pypath.core.annot.Kirouac2010.numof_entities"]], "numof_records() (pypath.core.annot.kirouac2010 method)": [[57, "pypath.core.annot.Kirouac2010.numof_records"]], "numof_references() (pypath.core.annot.kirouac2010 method)": [[57, "pypath.core.annot.Kirouac2010.numof_references"]], "process() (pypath.core.annot.kirouac2010 method)": [[57, "pypath.core.annot.Kirouac2010.process"]], "reload() (pypath.core.annot.kirouac2010 method)": [[57, "pypath.core.annot.Kirouac2010.reload"]], "select() (pypath.core.annot.kirouac2010 method)": [[57, "pypath.core.annot.Kirouac2010.select"]], "set_method() (pypath.core.annot.kirouac2010 method)": [[57, "pypath.core.annot.Kirouac2010.set_method"]], "set_reference_set() (pypath.core.annot.kirouac2010 method)": [[57, "pypath.core.annot.Kirouac2010.set_reference_set"]], "show() (pypath.core.annot.kirouac2010 method)": [[57, "pypath.core.annot.Kirouac2010.show"]], "subset_intersection() (pypath.core.annot.kirouac2010 method)": [[57, "pypath.core.annot.Kirouac2010.subset_intersection"]], "to_array() (pypath.core.annot.kirouac2010 method)": [[57, "pypath.core.annot.Kirouac2010.to_array"]], "to_bool_array() (pypath.core.annot.kirouac2010 method)": [[57, "pypath.core.annot.Kirouac2010.to_bool_array"]], "to_set() (pypath.core.annot.kirouac2010 method)": [[57, "pypath.core.annot.Kirouac2010.to_set"]], "lambert2018 (class in pypath.core.annot)": [[58, "pypath.core.annot.Lambert2018"]], "__init__() (pypath.core.annot.lambert2018 method)": [[58, "pypath.core.annot.Lambert2018.__init__"]], "add_complexes_by_inference() (pypath.core.annot.lambert2018 method)": [[58, "pypath.core.annot.Lambert2018.add_complexes_by_inference"]], "all_complexes() (pypath.core.annot.lambert2018 method)": [[58, "pypath.core.annot.Lambert2018.all_complexes"]], "all_entities() (pypath.core.annot.lambert2018 method)": [[58, "pypath.core.annot.Lambert2018.all_entities"]], "all_mirnas() (pypath.core.annot.lambert2018 method)": [[58, "pypath.core.annot.Lambert2018.all_mirnas"]], "all_proteins() (pypath.core.annot.lambert2018 method)": [[58, "pypath.core.annot.Lambert2018.all_proteins"]], "all_refs() (pypath.core.annot.lambert2018 method)": [[58, "pypath.core.annot.Lambert2018.all_refs"]], "annotate_complex() (pypath.core.annot.lambert2018 method)": [[58, "pypath.core.annot.Lambert2018.annotate_complex"]], "browse() (pypath.core.annot.lambert2018 method)": [[58, "pypath.core.annot.Lambert2018.browse"]], "complex_inference() (pypath.core.annot.lambert2018 method)": [[58, "pypath.core.annot.Lambert2018.complex_inference"]], "coverage() (pypath.core.annot.lambert2018 method)": [[58, "pypath.core.annot.Lambert2018.coverage"]], "curation_effort() (pypath.core.annot.lambert2018 method)": [[58, "pypath.core.annot.Lambert2018.curation_effort"]], "get_names() (pypath.core.annot.lambert2018 method)": [[58, "pypath.core.annot.Lambert2018.get_names"]], "get_reference_set() (pypath.core.annot.lambert2018 static method)": [[58, "pypath.core.annot.Lambert2018.get_reference_set"]], "get_subset() (pypath.core.annot.lambert2018 method)": [[58, "pypath.core.annot.Lambert2018.get_subset"]], "get_subset_bool_array() (pypath.core.annot.lambert2018 method)": [[58, "pypath.core.annot.Lambert2018.get_subset_bool_array"]], "get_values() (pypath.core.annot.lambert2018 method)": [[58, "pypath.core.annot.Lambert2018.get_values"]], "labels() (pypath.core.annot.lambert2018 method)": [[58, "pypath.core.annot.Lambert2018.labels"]], "load() (pypath.core.annot.lambert2018 method)": [[58, "pypath.core.annot.Lambert2018.load"]], "load_data() (pypath.core.annot.lambert2018 method)": [[58, "pypath.core.annot.Lambert2018.load_data"]], "load_proteins() (pypath.core.annot.lambert2018 method)": [[58, "pypath.core.annot.Lambert2018.load_proteins"]], "make_df() (pypath.core.annot.lambert2018 method)": [[58, "pypath.core.annot.Lambert2018.make_df"]], "numof_entities() (pypath.core.annot.lambert2018 method)": [[58, "pypath.core.annot.Lambert2018.numof_entities"]], "numof_records() (pypath.core.annot.lambert2018 method)": [[58, "pypath.core.annot.Lambert2018.numof_records"]], "numof_references() (pypath.core.annot.lambert2018 method)": [[58, "pypath.core.annot.Lambert2018.numof_references"]], "process() (pypath.core.annot.lambert2018 method)": [[58, "pypath.core.annot.Lambert2018.process"]], "reload() (pypath.core.annot.lambert2018 method)": [[58, "pypath.core.annot.Lambert2018.reload"]], "select() (pypath.core.annot.lambert2018 method)": [[58, "pypath.core.annot.Lambert2018.select"]], "set_method() (pypath.core.annot.lambert2018 method)": [[58, "pypath.core.annot.Lambert2018.set_method"]], "set_reference_set() (pypath.core.annot.lambert2018 method)": [[58, "pypath.core.annot.Lambert2018.set_reference_set"]], "show() (pypath.core.annot.lambert2018 method)": [[58, "pypath.core.annot.Lambert2018.show"]], "subset_intersection() (pypath.core.annot.lambert2018 method)": [[58, "pypath.core.annot.Lambert2018.subset_intersection"]], "to_array() (pypath.core.annot.lambert2018 method)": [[58, "pypath.core.annot.Lambert2018.to_array"]], "to_bool_array() (pypath.core.annot.lambert2018 method)": [[58, "pypath.core.annot.Lambert2018.to_bool_array"]], "to_set() (pypath.core.annot.lambert2018 method)": [[58, "pypath.core.annot.Lambert2018.to_set"]], "ligandreceptor (class in pypath.core.annot)": [[59, "pypath.core.annot.LigandReceptor"]], "__init__() (pypath.core.annot.ligandreceptor method)": [[59, "pypath.core.annot.LigandReceptor.__init__"]], "add_complexes_by_inference() (pypath.core.annot.ligandreceptor method)": [[59, "pypath.core.annot.LigandReceptor.add_complexes_by_inference"]], "all_complexes() (pypath.core.annot.ligandreceptor method)": [[59, "pypath.core.annot.LigandReceptor.all_complexes"]], "all_entities() (pypath.core.annot.ligandreceptor method)": [[59, "pypath.core.annot.LigandReceptor.all_entities"]], "all_mirnas() (pypath.core.annot.ligandreceptor method)": [[59, "pypath.core.annot.LigandReceptor.all_mirnas"]], "all_proteins() (pypath.core.annot.ligandreceptor method)": [[59, "pypath.core.annot.LigandReceptor.all_proteins"]], "all_refs() (pypath.core.annot.ligandreceptor method)": [[59, "pypath.core.annot.LigandReceptor.all_refs"]], "annotate_complex() (pypath.core.annot.ligandreceptor method)": [[59, "pypath.core.annot.LigandReceptor.annotate_complex"]], "browse() (pypath.core.annot.ligandreceptor method)": [[59, "pypath.core.annot.LigandReceptor.browse"]], "complex_inference() (pypath.core.annot.ligandreceptor method)": [[59, "pypath.core.annot.LigandReceptor.complex_inference"]], "coverage() (pypath.core.annot.ligandreceptor method)": [[59, "pypath.core.annot.LigandReceptor.coverage"]], "curation_effort() (pypath.core.annot.ligandreceptor method)": [[59, "pypath.core.annot.LigandReceptor.curation_effort"]], "get_names() (pypath.core.annot.ligandreceptor method)": [[59, "pypath.core.annot.LigandReceptor.get_names"]], "get_reference_set() (pypath.core.annot.ligandreceptor static method)": [[59, "pypath.core.annot.LigandReceptor.get_reference_set"]], "get_subset() (pypath.core.annot.ligandreceptor method)": [[59, "pypath.core.annot.LigandReceptor.get_subset"]], "get_subset_bool_array() (pypath.core.annot.ligandreceptor method)": [[59, "pypath.core.annot.LigandReceptor.get_subset_bool_array"]], "get_values() (pypath.core.annot.ligandreceptor method)": [[59, "pypath.core.annot.LigandReceptor.get_values"]], "labels() (pypath.core.annot.ligandreceptor method)": [[59, "pypath.core.annot.LigandReceptor.labels"]], "load() (pypath.core.annot.ligandreceptor method)": [[59, "pypath.core.annot.LigandReceptor.load"]], "load_data() (pypath.core.annot.ligandreceptor method)": [[59, "pypath.core.annot.LigandReceptor.load_data"]], "load_proteins() (pypath.core.annot.ligandreceptor method)": [[59, "pypath.core.annot.LigandReceptor.load_proteins"]], "make_df() (pypath.core.annot.ligandreceptor method)": [[59, "pypath.core.annot.LigandReceptor.make_df"]], "numof_entities() (pypath.core.annot.ligandreceptor method)": [[59, "pypath.core.annot.LigandReceptor.numof_entities"]], "numof_records() (pypath.core.annot.ligandreceptor method)": [[59, "pypath.core.annot.LigandReceptor.numof_records"]], "numof_references() (pypath.core.annot.ligandreceptor method)": [[59, "pypath.core.annot.LigandReceptor.numof_references"]], "process() (pypath.core.annot.ligandreceptor method)": [[59, "pypath.core.annot.LigandReceptor.process"]], "reload() (pypath.core.annot.ligandreceptor method)": [[59, "pypath.core.annot.LigandReceptor.reload"]], "select() (pypath.core.annot.ligandreceptor method)": [[59, "pypath.core.annot.LigandReceptor.select"]], "set_method() (pypath.core.annot.ligandreceptor method)": [[59, "pypath.core.annot.LigandReceptor.set_method"]], "set_reference_set() (pypath.core.annot.ligandreceptor method)": [[59, "pypath.core.annot.LigandReceptor.set_reference_set"]], "show() (pypath.core.annot.ligandreceptor method)": [[59, "pypath.core.annot.LigandReceptor.show"]], "subset_intersection() (pypath.core.annot.ligandreceptor method)": [[59, "pypath.core.annot.LigandReceptor.subset_intersection"]], "to_array() (pypath.core.annot.ligandreceptor method)": [[59, "pypath.core.annot.LigandReceptor.to_array"]], "to_bool_array() (pypath.core.annot.ligandreceptor method)": [[59, "pypath.core.annot.LigandReceptor.to_bool_array"]], "to_set() (pypath.core.annot.ligandreceptor method)": [[59, "pypath.core.annot.LigandReceptor.to_set"]], "locate (class in pypath.core.annot)": [[60, "pypath.core.annot.Locate"]], "__init__() (pypath.core.annot.locate method)": [[60, "pypath.core.annot.Locate.__init__"]], "add_complexes_by_inference() (pypath.core.annot.locate method)": [[60, "pypath.core.annot.Locate.add_complexes_by_inference"]], "all_complexes() (pypath.core.annot.locate method)": [[60, "pypath.core.annot.Locate.all_complexes"]], "all_entities() (pypath.core.annot.locate method)": [[60, "pypath.core.annot.Locate.all_entities"]], "all_mirnas() (pypath.core.annot.locate method)": [[60, "pypath.core.annot.Locate.all_mirnas"]], "all_proteins() (pypath.core.annot.locate method)": [[60, "pypath.core.annot.Locate.all_proteins"]], "all_refs() (pypath.core.annot.locate method)": [[60, "pypath.core.annot.Locate.all_refs"]], "annotate_complex() (pypath.core.annot.locate method)": [[60, "pypath.core.annot.Locate.annotate_complex"]], "browse() (pypath.core.annot.locate method)": [[60, "pypath.core.annot.Locate.browse"]], "complex_inference() (pypath.core.annot.locate method)": [[60, "pypath.core.annot.Locate.complex_inference"]], "coverage() (pypath.core.annot.locate method)": [[60, "pypath.core.annot.Locate.coverage"]], "curation_effort() (pypath.core.annot.locate method)": [[60, "pypath.core.annot.Locate.curation_effort"]], "get_names() (pypath.core.annot.locate method)": [[60, "pypath.core.annot.Locate.get_names"]], "get_reference_set() (pypath.core.annot.locate static method)": [[60, "pypath.core.annot.Locate.get_reference_set"]], "get_subset() (pypath.core.annot.locate method)": [[60, "pypath.core.annot.Locate.get_subset"]], "get_subset_bool_array() (pypath.core.annot.locate method)": [[60, "pypath.core.annot.Locate.get_subset_bool_array"]], "get_values() (pypath.core.annot.locate method)": [[60, "pypath.core.annot.Locate.get_values"]], "labels() (pypath.core.annot.locate method)": [[60, "pypath.core.annot.Locate.labels"]], "load() (pypath.core.annot.locate method)": [[60, "pypath.core.annot.Locate.load"]], "load_data() (pypath.core.annot.locate method)": [[60, "pypath.core.annot.Locate.load_data"]], "load_proteins() (pypath.core.annot.locate method)": [[60, "pypath.core.annot.Locate.load_proteins"]], "make_df() (pypath.core.annot.locate method)": [[60, "pypath.core.annot.Locate.make_df"]], "numof_entities() (pypath.core.annot.locate method)": [[60, "pypath.core.annot.Locate.numof_entities"]], "numof_records() (pypath.core.annot.locate method)": [[60, "pypath.core.annot.Locate.numof_records"]], "numof_references() (pypath.core.annot.locate method)": [[60, "pypath.core.annot.Locate.numof_references"]], "process() (pypath.core.annot.locate method)": [[60, "pypath.core.annot.Locate.process"]], "reload() (pypath.core.annot.locate method)": [[60, "pypath.core.annot.Locate.reload"]], "select() (pypath.core.annot.locate method)": [[60, "pypath.core.annot.Locate.select"]], "set_method() (pypath.core.annot.locate method)": [[60, "pypath.core.annot.Locate.set_method"]], "set_reference_set() (pypath.core.annot.locate method)": [[60, "pypath.core.annot.Locate.set_reference_set"]], "show() (pypath.core.annot.locate method)": [[60, "pypath.core.annot.Locate.show"]], "subset_intersection() (pypath.core.annot.locate method)": [[60, "pypath.core.annot.Locate.subset_intersection"]], "to_array() (pypath.core.annot.locate method)": [[60, "pypath.core.annot.Locate.to_array"]], "to_bool_array() (pypath.core.annot.locate method)": [[60, "pypath.core.annot.Locate.to_bool_array"]], "to_set() (pypath.core.annot.locate method)": [[60, "pypath.core.annot.Locate.to_set"]], "lrdb (class in pypath.core.annot)": [[61, "pypath.core.annot.Lrdb"]], "__init__() (pypath.core.annot.lrdb method)": [[61, "pypath.core.annot.Lrdb.__init__"]], "add_complexes_by_inference() (pypath.core.annot.lrdb method)": [[61, "pypath.core.annot.Lrdb.add_complexes_by_inference"]], "all_complexes() (pypath.core.annot.lrdb method)": [[61, "pypath.core.annot.Lrdb.all_complexes"]], "all_entities() (pypath.core.annot.lrdb method)": [[61, "pypath.core.annot.Lrdb.all_entities"]], "all_mirnas() (pypath.core.annot.lrdb method)": [[61, "pypath.core.annot.Lrdb.all_mirnas"]], "all_proteins() (pypath.core.annot.lrdb method)": [[61, "pypath.core.annot.Lrdb.all_proteins"]], "all_refs() (pypath.core.annot.lrdb method)": [[61, "pypath.core.annot.Lrdb.all_refs"]], "annotate_complex() (pypath.core.annot.lrdb method)": [[61, "pypath.core.annot.Lrdb.annotate_complex"]], "browse() (pypath.core.annot.lrdb method)": [[61, "pypath.core.annot.Lrdb.browse"]], "complex_inference() (pypath.core.annot.lrdb method)": [[61, "pypath.core.annot.Lrdb.complex_inference"]], "coverage() (pypath.core.annot.lrdb method)": [[61, "pypath.core.annot.Lrdb.coverage"]], "curation_effort() (pypath.core.annot.lrdb method)": [[61, "pypath.core.annot.Lrdb.curation_effort"]], "get_names() (pypath.core.annot.lrdb method)": [[61, "pypath.core.annot.Lrdb.get_names"]], "get_reference_set() (pypath.core.annot.lrdb static method)": [[61, "pypath.core.annot.Lrdb.get_reference_set"]], "get_subset() (pypath.core.annot.lrdb method)": [[61, "pypath.core.annot.Lrdb.get_subset"]], "get_subset_bool_array() (pypath.core.annot.lrdb method)": [[61, "pypath.core.annot.Lrdb.get_subset_bool_array"]], "get_values() (pypath.core.annot.lrdb method)": [[61, "pypath.core.annot.Lrdb.get_values"]], "labels() (pypath.core.annot.lrdb method)": [[61, "pypath.core.annot.Lrdb.labels"]], "load() (pypath.core.annot.lrdb method)": [[61, "pypath.core.annot.Lrdb.load"]], "load_data() (pypath.core.annot.lrdb method)": [[61, "pypath.core.annot.Lrdb.load_data"]], "load_proteins() (pypath.core.annot.lrdb method)": [[61, "pypath.core.annot.Lrdb.load_proteins"]], "make_df() (pypath.core.annot.lrdb method)": [[61, "pypath.core.annot.Lrdb.make_df"]], "numof_entities() (pypath.core.annot.lrdb method)": [[61, "pypath.core.annot.Lrdb.numof_entities"]], "numof_records() (pypath.core.annot.lrdb method)": [[61, "pypath.core.annot.Lrdb.numof_records"]], "numof_references() (pypath.core.annot.lrdb method)": [[61, "pypath.core.annot.Lrdb.numof_references"]], "process() (pypath.core.annot.lrdb method)": [[61, "pypath.core.annot.Lrdb.process"]], "reload() (pypath.core.annot.lrdb method)": [[61, "pypath.core.annot.Lrdb.reload"]], "select() (pypath.core.annot.lrdb method)": [[61, "pypath.core.annot.Lrdb.select"]], "set_method() (pypath.core.annot.lrdb method)": [[61, "pypath.core.annot.Lrdb.set_method"]], "set_reference_set() (pypath.core.annot.lrdb method)": [[61, "pypath.core.annot.Lrdb.set_reference_set"]], "show() (pypath.core.annot.lrdb method)": [[61, "pypath.core.annot.Lrdb.show"]], "subset_intersection() (pypath.core.annot.lrdb method)": [[61, "pypath.core.annot.Lrdb.subset_intersection"]], "to_array() (pypath.core.annot.lrdb method)": [[61, "pypath.core.annot.Lrdb.to_array"]], "to_bool_array() (pypath.core.annot.lrdb method)": [[61, "pypath.core.annot.Lrdb.to_bool_array"]], "to_set() (pypath.core.annot.lrdb method)": [[61, "pypath.core.annot.Lrdb.to_set"]], "matrisome (class in pypath.core.annot)": [[62, "pypath.core.annot.Matrisome"]], "__init__() (pypath.core.annot.matrisome method)": [[62, "pypath.core.annot.Matrisome.__init__"]], "add_complexes_by_inference() (pypath.core.annot.matrisome method)": [[62, "pypath.core.annot.Matrisome.add_complexes_by_inference"]], "all_complexes() (pypath.core.annot.matrisome method)": [[62, "pypath.core.annot.Matrisome.all_complexes"]], "all_entities() (pypath.core.annot.matrisome method)": [[62, "pypath.core.annot.Matrisome.all_entities"]], "all_mirnas() (pypath.core.annot.matrisome method)": [[62, "pypath.core.annot.Matrisome.all_mirnas"]], "all_proteins() (pypath.core.annot.matrisome method)": [[62, "pypath.core.annot.Matrisome.all_proteins"]], "all_refs() (pypath.core.annot.matrisome method)": [[62, "pypath.core.annot.Matrisome.all_refs"]], "annotate_complex() (pypath.core.annot.matrisome method)": [[62, "pypath.core.annot.Matrisome.annotate_complex"]], "browse() (pypath.core.annot.matrisome method)": [[62, "pypath.core.annot.Matrisome.browse"]], "complex_inference() (pypath.core.annot.matrisome method)": [[62, "pypath.core.annot.Matrisome.complex_inference"]], "coverage() (pypath.core.annot.matrisome method)": [[62, "pypath.core.annot.Matrisome.coverage"]], "curation_effort() (pypath.core.annot.matrisome method)": [[62, "pypath.core.annot.Matrisome.curation_effort"]], "get_names() (pypath.core.annot.matrisome method)": [[62, "pypath.core.annot.Matrisome.get_names"]], "get_reference_set() (pypath.core.annot.matrisome static method)": [[62, "pypath.core.annot.Matrisome.get_reference_set"]], "get_subset() (pypath.core.annot.matrisome method)": [[62, "pypath.core.annot.Matrisome.get_subset"]], "get_subset_bool_array() (pypath.core.annot.matrisome method)": [[62, "pypath.core.annot.Matrisome.get_subset_bool_array"]], "get_values() (pypath.core.annot.matrisome method)": [[62, "pypath.core.annot.Matrisome.get_values"]], "labels() (pypath.core.annot.matrisome method)": [[62, "pypath.core.annot.Matrisome.labels"]], "load() (pypath.core.annot.matrisome method)": [[62, "pypath.core.annot.Matrisome.load"]], "load_data() (pypath.core.annot.matrisome method)": [[62, "pypath.core.annot.Matrisome.load_data"]], "load_proteins() (pypath.core.annot.matrisome method)": [[62, "pypath.core.annot.Matrisome.load_proteins"]], "make_df() (pypath.core.annot.matrisome method)": [[62, "pypath.core.annot.Matrisome.make_df"]], "numof_entities() (pypath.core.annot.matrisome method)": [[62, "pypath.core.annot.Matrisome.numof_entities"]], "numof_records() (pypath.core.annot.matrisome method)": [[62, "pypath.core.annot.Matrisome.numof_records"]], "numof_references() (pypath.core.annot.matrisome method)": [[62, "pypath.core.annot.Matrisome.numof_references"]], "process() (pypath.core.annot.matrisome method)": [[62, "pypath.core.annot.Matrisome.process"]], "reload() (pypath.core.annot.matrisome method)": [[62, "pypath.core.annot.Matrisome.reload"]], "select() (pypath.core.annot.matrisome method)": [[62, "pypath.core.annot.Matrisome.select"]], "set_method() (pypath.core.annot.matrisome method)": [[62, "pypath.core.annot.Matrisome.set_method"]], "set_reference_set() (pypath.core.annot.matrisome method)": [[62, "pypath.core.annot.Matrisome.set_reference_set"]], "show() (pypath.core.annot.matrisome method)": [[62, "pypath.core.annot.Matrisome.show"]], "subset_intersection() (pypath.core.annot.matrisome method)": [[62, "pypath.core.annot.Matrisome.subset_intersection"]], "to_array() (pypath.core.annot.matrisome method)": [[62, "pypath.core.annot.Matrisome.to_array"]], "to_bool_array() (pypath.core.annot.matrisome method)": [[62, "pypath.core.annot.Matrisome.to_bool_array"]], "to_set() (pypath.core.annot.matrisome method)": [[62, "pypath.core.annot.Matrisome.to_set"]], "matrixdb (class in pypath.core.annot)": [[63, "pypath.core.annot.Matrixdb"]], "__init__() (pypath.core.annot.matrixdb method)": [[63, "pypath.core.annot.Matrixdb.__init__"]], "add_complexes_by_inference() (pypath.core.annot.matrixdb method)": [[63, "pypath.core.annot.Matrixdb.add_complexes_by_inference"]], "all_complexes() (pypath.core.annot.matrixdb method)": [[63, "pypath.core.annot.Matrixdb.all_complexes"]], "all_entities() (pypath.core.annot.matrixdb method)": [[63, "pypath.core.annot.Matrixdb.all_entities"]], "all_mirnas() (pypath.core.annot.matrixdb method)": [[63, "pypath.core.annot.Matrixdb.all_mirnas"]], "all_proteins() (pypath.core.annot.matrixdb method)": [[63, "pypath.core.annot.Matrixdb.all_proteins"]], "all_refs() (pypath.core.annot.matrixdb method)": [[63, "pypath.core.annot.Matrixdb.all_refs"]], "annotate_complex() (pypath.core.annot.matrixdb method)": [[63, "pypath.core.annot.Matrixdb.annotate_complex"]], "browse() (pypath.core.annot.matrixdb method)": [[63, "pypath.core.annot.Matrixdb.browse"]], "complex_inference() (pypath.core.annot.matrixdb method)": [[63, "pypath.core.annot.Matrixdb.complex_inference"]], "coverage() (pypath.core.annot.matrixdb method)": [[63, "pypath.core.annot.Matrixdb.coverage"]], "curation_effort() (pypath.core.annot.matrixdb method)": [[63, "pypath.core.annot.Matrixdb.curation_effort"]], "get_names() (pypath.core.annot.matrixdb method)": [[63, "pypath.core.annot.Matrixdb.get_names"]], "get_reference_set() (pypath.core.annot.matrixdb static method)": [[63, "pypath.core.annot.Matrixdb.get_reference_set"]], "get_subset() (pypath.core.annot.matrixdb method)": [[63, "pypath.core.annot.Matrixdb.get_subset"]], "get_subset_bool_array() (pypath.core.annot.matrixdb method)": [[63, "pypath.core.annot.Matrixdb.get_subset_bool_array"]], "get_values() (pypath.core.annot.matrixdb method)": [[63, "pypath.core.annot.Matrixdb.get_values"]], "labels() (pypath.core.annot.matrixdb method)": [[63, "pypath.core.annot.Matrixdb.labels"]], "load() (pypath.core.annot.matrixdb method)": [[63, "pypath.core.annot.Matrixdb.load"]], "load_data() (pypath.core.annot.matrixdb method)": [[63, "pypath.core.annot.Matrixdb.load_data"]], "load_proteins() (pypath.core.annot.matrixdb method)": [[63, "pypath.core.annot.Matrixdb.load_proteins"]], "make_df() (pypath.core.annot.matrixdb method)": [[63, "pypath.core.annot.Matrixdb.make_df"]], "numof_entities() (pypath.core.annot.matrixdb method)": [[63, "pypath.core.annot.Matrixdb.numof_entities"]], "numof_records() (pypath.core.annot.matrixdb method)": [[63, "pypath.core.annot.Matrixdb.numof_records"]], "numof_references() (pypath.core.annot.matrixdb method)": [[63, "pypath.core.annot.Matrixdb.numof_references"]], "process() (pypath.core.annot.matrixdb method)": [[63, "pypath.core.annot.Matrixdb.process"]], "reload() (pypath.core.annot.matrixdb method)": [[63, "pypath.core.annot.Matrixdb.reload"]], "select() (pypath.core.annot.matrixdb method)": [[63, "pypath.core.annot.Matrixdb.select"]], "set_method() (pypath.core.annot.matrixdb method)": [[63, "pypath.core.annot.Matrixdb.set_method"]], "set_reference_set() (pypath.core.annot.matrixdb method)": [[63, "pypath.core.annot.Matrixdb.set_reference_set"]], "show() (pypath.core.annot.matrixdb method)": [[63, "pypath.core.annot.Matrixdb.show"]], "subset_intersection() (pypath.core.annot.matrixdb method)": [[63, "pypath.core.annot.Matrixdb.subset_intersection"]], "to_array() (pypath.core.annot.matrixdb method)": [[63, "pypath.core.annot.Matrixdb.to_array"]], "to_bool_array() (pypath.core.annot.matrixdb method)": [[63, "pypath.core.annot.Matrixdb.to_bool_array"]], "to_set() (pypath.core.annot.matrixdb method)": [[63, "pypath.core.annot.Matrixdb.to_set"]], "mcam (class in pypath.core.annot)": [[64, "pypath.core.annot.Mcam"]], "__init__() (pypath.core.annot.mcam method)": [[64, "pypath.core.annot.Mcam.__init__"]], "add_complexes_by_inference() (pypath.core.annot.mcam method)": [[64, "pypath.core.annot.Mcam.add_complexes_by_inference"]], "all_complexes() (pypath.core.annot.mcam method)": [[64, "pypath.core.annot.Mcam.all_complexes"]], "all_entities() (pypath.core.annot.mcam method)": [[64, "pypath.core.annot.Mcam.all_entities"]], "all_mirnas() (pypath.core.annot.mcam method)": [[64, "pypath.core.annot.Mcam.all_mirnas"]], "all_proteins() (pypath.core.annot.mcam method)": [[64, "pypath.core.annot.Mcam.all_proteins"]], "all_refs() (pypath.core.annot.mcam method)": [[64, "pypath.core.annot.Mcam.all_refs"]], "annotate_complex() (pypath.core.annot.mcam method)": [[64, "pypath.core.annot.Mcam.annotate_complex"]], "browse() (pypath.core.annot.mcam method)": [[64, "pypath.core.annot.Mcam.browse"]], "complex_inference() (pypath.core.annot.mcam method)": [[64, "pypath.core.annot.Mcam.complex_inference"]], "coverage() (pypath.core.annot.mcam method)": [[64, "pypath.core.annot.Mcam.coverage"]], "curation_effort() (pypath.core.annot.mcam method)": [[64, "pypath.core.annot.Mcam.curation_effort"]], "get_names() (pypath.core.annot.mcam method)": [[64, "pypath.core.annot.Mcam.get_names"]], "get_reference_set() (pypath.core.annot.mcam static method)": [[64, "pypath.core.annot.Mcam.get_reference_set"]], "get_subset() (pypath.core.annot.mcam method)": [[64, "pypath.core.annot.Mcam.get_subset"]], "get_subset_bool_array() (pypath.core.annot.mcam method)": [[64, "pypath.core.annot.Mcam.get_subset_bool_array"]], "get_values() (pypath.core.annot.mcam method)": [[64, "pypath.core.annot.Mcam.get_values"]], "labels() (pypath.core.annot.mcam method)": [[64, "pypath.core.annot.Mcam.labels"]], "load() (pypath.core.annot.mcam method)": [[64, "pypath.core.annot.Mcam.load"]], "load_data() (pypath.core.annot.mcam method)": [[64, "pypath.core.annot.Mcam.load_data"]], "load_proteins() (pypath.core.annot.mcam method)": [[64, "pypath.core.annot.Mcam.load_proteins"]], "make_df() (pypath.core.annot.mcam method)": [[64, "pypath.core.annot.Mcam.make_df"]], "numof_entities() (pypath.core.annot.mcam method)": [[64, "pypath.core.annot.Mcam.numof_entities"]], "numof_records() (pypath.core.annot.mcam method)": [[64, "pypath.core.annot.Mcam.numof_records"]], "numof_references() (pypath.core.annot.mcam method)": [[64, "pypath.core.annot.Mcam.numof_references"]], "process() (pypath.core.annot.mcam method)": [[64, "pypath.core.annot.Mcam.process"]], "reload() (pypath.core.annot.mcam method)": [[64, "pypath.core.annot.Mcam.reload"]], "select() (pypath.core.annot.mcam method)": [[64, "pypath.core.annot.Mcam.select"]], "set_method() (pypath.core.annot.mcam method)": [[64, "pypath.core.annot.Mcam.set_method"]], "set_reference_set() (pypath.core.annot.mcam method)": [[64, "pypath.core.annot.Mcam.set_reference_set"]], "show() (pypath.core.annot.mcam method)": [[64, "pypath.core.annot.Mcam.show"]], "subset_intersection() (pypath.core.annot.mcam method)": [[64, "pypath.core.annot.Mcam.subset_intersection"]], "to_array() (pypath.core.annot.mcam method)": [[64, "pypath.core.annot.Mcam.to_array"]], "to_bool_array() (pypath.core.annot.mcam method)": [[64, "pypath.core.annot.Mcam.to_bool_array"]], "to_set() (pypath.core.annot.mcam method)": [[64, "pypath.core.annot.Mcam.to_set"]], "membranome (class in pypath.core.annot)": [[65, "pypath.core.annot.Membranome"]], "__init__() (pypath.core.annot.membranome method)": [[65, "pypath.core.annot.Membranome.__init__"]], "add_complexes_by_inference() (pypath.core.annot.membranome method)": [[65, "pypath.core.annot.Membranome.add_complexes_by_inference"]], "all_complexes() (pypath.core.annot.membranome method)": [[65, "pypath.core.annot.Membranome.all_complexes"]], "all_entities() (pypath.core.annot.membranome method)": [[65, "pypath.core.annot.Membranome.all_entities"]], "all_mirnas() (pypath.core.annot.membranome method)": [[65, "pypath.core.annot.Membranome.all_mirnas"]], "all_proteins() (pypath.core.annot.membranome method)": [[65, "pypath.core.annot.Membranome.all_proteins"]], "all_refs() (pypath.core.annot.membranome method)": [[65, "pypath.core.annot.Membranome.all_refs"]], "annotate_complex() (pypath.core.annot.membranome method)": [[65, "pypath.core.annot.Membranome.annotate_complex"]], "browse() (pypath.core.annot.membranome method)": [[65, "pypath.core.annot.Membranome.browse"]], "complex_inference() (pypath.core.annot.membranome method)": [[65, "pypath.core.annot.Membranome.complex_inference"]], "coverage() (pypath.core.annot.membranome method)": [[65, "pypath.core.annot.Membranome.coverage"]], "curation_effort() (pypath.core.annot.membranome method)": [[65, "pypath.core.annot.Membranome.curation_effort"]], "get_names() (pypath.core.annot.membranome method)": [[65, "pypath.core.annot.Membranome.get_names"]], "get_reference_set() (pypath.core.annot.membranome static method)": [[65, "pypath.core.annot.Membranome.get_reference_set"]], "get_subset() (pypath.core.annot.membranome method)": [[65, "pypath.core.annot.Membranome.get_subset"]], "get_subset_bool_array() (pypath.core.annot.membranome method)": [[65, "pypath.core.annot.Membranome.get_subset_bool_array"]], "get_values() (pypath.core.annot.membranome method)": [[65, "pypath.core.annot.Membranome.get_values"]], "labels() (pypath.core.annot.membranome method)": [[65, "pypath.core.annot.Membranome.labels"]], "load() (pypath.core.annot.membranome method)": [[65, "pypath.core.annot.Membranome.load"]], "load_data() (pypath.core.annot.membranome method)": [[65, "pypath.core.annot.Membranome.load_data"]], "load_proteins() (pypath.core.annot.membranome method)": [[65, "pypath.core.annot.Membranome.load_proteins"]], "make_df() (pypath.core.annot.membranome method)": [[65, "pypath.core.annot.Membranome.make_df"]], "numof_entities() (pypath.core.annot.membranome method)": [[65, "pypath.core.annot.Membranome.numof_entities"]], "numof_records() (pypath.core.annot.membranome method)": [[65, "pypath.core.annot.Membranome.numof_records"]], "numof_references() (pypath.core.annot.membranome method)": [[65, "pypath.core.annot.Membranome.numof_references"]], "process() (pypath.core.annot.membranome method)": [[65, "pypath.core.annot.Membranome.process"]], "reload() (pypath.core.annot.membranome method)": [[65, "pypath.core.annot.Membranome.reload"]], "select() (pypath.core.annot.membranome method)": [[65, "pypath.core.annot.Membranome.select"]], "set_method() (pypath.core.annot.membranome method)": [[65, "pypath.core.annot.Membranome.set_method"]], "set_reference_set() (pypath.core.annot.membranome method)": [[65, "pypath.core.annot.Membranome.set_reference_set"]], "show() (pypath.core.annot.membranome method)": [[65, "pypath.core.annot.Membranome.show"]], "subset_intersection() (pypath.core.annot.membranome method)": [[65, "pypath.core.annot.Membranome.subset_intersection"]], "to_array() (pypath.core.annot.membranome method)": [[65, "pypath.core.annot.Membranome.to_array"]], "to_bool_array() (pypath.core.annot.membranome method)": [[65, "pypath.core.annot.Membranome.to_bool_array"]], "to_set() (pypath.core.annot.membranome method)": [[65, "pypath.core.annot.Membranome.to_set"]], "msigdb (class in pypath.core.annot)": [[66, "pypath.core.annot.Msigdb"]], "__init__() (pypath.core.annot.msigdb method)": [[66, "pypath.core.annot.Msigdb.__init__"]], "add_complexes_by_inference() (pypath.core.annot.msigdb method)": [[66, "pypath.core.annot.Msigdb.add_complexes_by_inference"]], "all_complexes() (pypath.core.annot.msigdb method)": [[66, "pypath.core.annot.Msigdb.all_complexes"]], "all_entities() (pypath.core.annot.msigdb method)": [[66, "pypath.core.annot.Msigdb.all_entities"]], "all_mirnas() (pypath.core.annot.msigdb method)": [[66, "pypath.core.annot.Msigdb.all_mirnas"]], "all_proteins() (pypath.core.annot.msigdb method)": [[66, "pypath.core.annot.Msigdb.all_proteins"]], "all_refs() (pypath.core.annot.msigdb method)": [[66, "pypath.core.annot.Msigdb.all_refs"]], "annotate_complex() (pypath.core.annot.msigdb method)": [[66, "pypath.core.annot.Msigdb.annotate_complex"]], "browse() (pypath.core.annot.msigdb method)": [[66, "pypath.core.annot.Msigdb.browse"]], "complex_inference() (pypath.core.annot.msigdb method)": [[66, "pypath.core.annot.Msigdb.complex_inference"]], "coverage() (pypath.core.annot.msigdb method)": [[66, "pypath.core.annot.Msigdb.coverage"]], "curation_effort() (pypath.core.annot.msigdb method)": [[66, "pypath.core.annot.Msigdb.curation_effort"]], "get_names() (pypath.core.annot.msigdb method)": [[66, "pypath.core.annot.Msigdb.get_names"]], "get_reference_set() (pypath.core.annot.msigdb static method)": [[66, "pypath.core.annot.Msigdb.get_reference_set"]], "get_subset() (pypath.core.annot.msigdb method)": [[66, "pypath.core.annot.Msigdb.get_subset"]], "get_subset_bool_array() (pypath.core.annot.msigdb method)": [[66, "pypath.core.annot.Msigdb.get_subset_bool_array"]], "get_values() (pypath.core.annot.msigdb method)": [[66, "pypath.core.annot.Msigdb.get_values"]], "labels() (pypath.core.annot.msigdb method)": [[66, "pypath.core.annot.Msigdb.labels"]], "load() (pypath.core.annot.msigdb method)": [[66, "pypath.core.annot.Msigdb.load"]], "load_data() (pypath.core.annot.msigdb method)": [[66, "pypath.core.annot.Msigdb.load_data"]], "load_proteins() (pypath.core.annot.msigdb method)": [[66, "pypath.core.annot.Msigdb.load_proteins"]], "make_df() (pypath.core.annot.msigdb method)": [[66, "pypath.core.annot.Msigdb.make_df"]], "numof_entities() (pypath.core.annot.msigdb method)": [[66, "pypath.core.annot.Msigdb.numof_entities"]], "numof_records() (pypath.core.annot.msigdb method)": [[66, "pypath.core.annot.Msigdb.numof_records"]], "numof_references() (pypath.core.annot.msigdb method)": [[66, "pypath.core.annot.Msigdb.numof_references"]], "process() (pypath.core.annot.msigdb method)": [[66, "pypath.core.annot.Msigdb.process"]], "reload() (pypath.core.annot.msigdb method)": [[66, "pypath.core.annot.Msigdb.reload"]], "select() (pypath.core.annot.msigdb method)": [[66, "pypath.core.annot.Msigdb.select"]], "set_method() (pypath.core.annot.msigdb method)": [[66, "pypath.core.annot.Msigdb.set_method"]], "set_reference_set() (pypath.core.annot.msigdb method)": [[66, "pypath.core.annot.Msigdb.set_reference_set"]], "show() (pypath.core.annot.msigdb method)": [[66, "pypath.core.annot.Msigdb.show"]], "subset_intersection() (pypath.core.annot.msigdb method)": [[66, "pypath.core.annot.Msigdb.subset_intersection"]], "to_array() (pypath.core.annot.msigdb method)": [[66, "pypath.core.annot.Msigdb.to_array"]], "to_bool_array() (pypath.core.annot.msigdb method)": [[66, "pypath.core.annot.Msigdb.to_bool_array"]], "to_set() (pypath.core.annot.msigdb method)": [[66, "pypath.core.annot.Msigdb.to_set"]], "netpathpathways (class in pypath.core.annot)": [[67, "pypath.core.annot.NetpathPathways"]], "__init__() (pypath.core.annot.netpathpathways method)": [[67, "pypath.core.annot.NetpathPathways.__init__"]], "add_complexes_by_inference() (pypath.core.annot.netpathpathways method)": [[67, "pypath.core.annot.NetpathPathways.add_complexes_by_inference"]], "all_complexes() (pypath.core.annot.netpathpathways method)": [[67, "pypath.core.annot.NetpathPathways.all_complexes"]], "all_entities() (pypath.core.annot.netpathpathways method)": [[67, "pypath.core.annot.NetpathPathways.all_entities"]], "all_mirnas() (pypath.core.annot.netpathpathways method)": [[67, "pypath.core.annot.NetpathPathways.all_mirnas"]], "all_proteins() (pypath.core.annot.netpathpathways method)": [[67, "pypath.core.annot.NetpathPathways.all_proteins"]], "all_refs() (pypath.core.annot.netpathpathways method)": [[67, "pypath.core.annot.NetpathPathways.all_refs"]], "annotate_complex() (pypath.core.annot.netpathpathways method)": [[67, "pypath.core.annot.NetpathPathways.annotate_complex"]], "browse() (pypath.core.annot.netpathpathways method)": [[67, "pypath.core.annot.NetpathPathways.browse"]], "complex_inference() (pypath.core.annot.netpathpathways method)": [[67, "pypath.core.annot.NetpathPathways.complex_inference"]], "coverage() (pypath.core.annot.netpathpathways method)": [[67, "pypath.core.annot.NetpathPathways.coverage"]], "curation_effort() (pypath.core.annot.netpathpathways method)": [[67, "pypath.core.annot.NetpathPathways.curation_effort"]], "get_names() (pypath.core.annot.netpathpathways method)": [[67, "pypath.core.annot.NetpathPathways.get_names"]], "get_reference_set() (pypath.core.annot.netpathpathways static method)": [[67, "pypath.core.annot.NetpathPathways.get_reference_set"]], "get_subset() (pypath.core.annot.netpathpathways method)": [[67, "pypath.core.annot.NetpathPathways.get_subset"]], "get_subset_bool_array() (pypath.core.annot.netpathpathways method)": [[67, "pypath.core.annot.NetpathPathways.get_subset_bool_array"]], "get_values() (pypath.core.annot.netpathpathways method)": [[67, "pypath.core.annot.NetpathPathways.get_values"]], "labels() (pypath.core.annot.netpathpathways method)": [[67, "pypath.core.annot.NetpathPathways.labels"]], "load() (pypath.core.annot.netpathpathways method)": [[67, "pypath.core.annot.NetpathPathways.load"]], "load_data() (pypath.core.annot.netpathpathways method)": [[67, "pypath.core.annot.NetpathPathways.load_data"]], "load_proteins() (pypath.core.annot.netpathpathways method)": [[67, "pypath.core.annot.NetpathPathways.load_proteins"]], "make_df() (pypath.core.annot.netpathpathways method)": [[67, "pypath.core.annot.NetpathPathways.make_df"]], "numof_entities() (pypath.core.annot.netpathpathways method)": [[67, "pypath.core.annot.NetpathPathways.numof_entities"]], "numof_records() (pypath.core.annot.netpathpathways method)": [[67, "pypath.core.annot.NetpathPathways.numof_records"]], "numof_references() (pypath.core.annot.netpathpathways method)": [[67, "pypath.core.annot.NetpathPathways.numof_references"]], "process() (pypath.core.annot.netpathpathways method)": [[67, "pypath.core.annot.NetpathPathways.process"]], "reload() (pypath.core.annot.netpathpathways method)": [[67, "pypath.core.annot.NetpathPathways.reload"]], "select() (pypath.core.annot.netpathpathways method)": [[67, "pypath.core.annot.NetpathPathways.select"]], "set_method() (pypath.core.annot.netpathpathways method)": [[67, "pypath.core.annot.NetpathPathways.set_method"]], "set_reference_set() (pypath.core.annot.netpathpathways method)": [[67, "pypath.core.annot.NetpathPathways.set_reference_set"]], "show() (pypath.core.annot.netpathpathways method)": [[67, "pypath.core.annot.NetpathPathways.show"]], "subset_intersection() (pypath.core.annot.netpathpathways method)": [[67, "pypath.core.annot.NetpathPathways.subset_intersection"]], "to_array() (pypath.core.annot.netpathpathways method)": [[67, "pypath.core.annot.NetpathPathways.to_array"]], "to_bool_array() (pypath.core.annot.netpathpathways method)": [[67, "pypath.core.annot.NetpathPathways.to_bool_array"]], "to_set() (pypath.core.annot.netpathpathways method)": [[67, "pypath.core.annot.NetpathPathways.to_set"]], "opm (class in pypath.core.annot)": [[68, "pypath.core.annot.Opm"]], "__init__() (pypath.core.annot.opm method)": [[68, "pypath.core.annot.Opm.__init__"]], "add_complexes_by_inference() (pypath.core.annot.opm method)": [[68, "pypath.core.annot.Opm.add_complexes_by_inference"]], "all_complexes() (pypath.core.annot.opm method)": [[68, "pypath.core.annot.Opm.all_complexes"]], "all_entities() (pypath.core.annot.opm method)": [[68, "pypath.core.annot.Opm.all_entities"]], "all_mirnas() (pypath.core.annot.opm method)": [[68, "pypath.core.annot.Opm.all_mirnas"]], "all_proteins() (pypath.core.annot.opm method)": [[68, "pypath.core.annot.Opm.all_proteins"]], "all_refs() (pypath.core.annot.opm method)": [[68, "pypath.core.annot.Opm.all_refs"]], "annotate_complex() (pypath.core.annot.opm method)": [[68, "pypath.core.annot.Opm.annotate_complex"]], "browse() (pypath.core.annot.opm method)": [[68, "pypath.core.annot.Opm.browse"]], "complex_inference() (pypath.core.annot.opm method)": [[68, "pypath.core.annot.Opm.complex_inference"]], "coverage() (pypath.core.annot.opm method)": [[68, "pypath.core.annot.Opm.coverage"]], "curation_effort() (pypath.core.annot.opm method)": [[68, "pypath.core.annot.Opm.curation_effort"]], "get_names() (pypath.core.annot.opm method)": [[68, "pypath.core.annot.Opm.get_names"]], "get_reference_set() (pypath.core.annot.opm static method)": [[68, "pypath.core.annot.Opm.get_reference_set"]], "get_subset() (pypath.core.annot.opm method)": [[68, "pypath.core.annot.Opm.get_subset"]], "get_subset_bool_array() (pypath.core.annot.opm method)": [[68, "pypath.core.annot.Opm.get_subset_bool_array"]], "get_values() (pypath.core.annot.opm method)": [[68, "pypath.core.annot.Opm.get_values"]], "labels() (pypath.core.annot.opm method)": [[68, "pypath.core.annot.Opm.labels"]], "load() (pypath.core.annot.opm method)": [[68, "pypath.core.annot.Opm.load"]], "load_data() (pypath.core.annot.opm method)": [[68, "pypath.core.annot.Opm.load_data"]], "load_proteins() (pypath.core.annot.opm method)": [[68, "pypath.core.annot.Opm.load_proteins"]], "make_df() (pypath.core.annot.opm method)": [[68, "pypath.core.annot.Opm.make_df"]], "numof_entities() (pypath.core.annot.opm method)": [[68, "pypath.core.annot.Opm.numof_entities"]], "numof_records() (pypath.core.annot.opm method)": [[68, "pypath.core.annot.Opm.numof_records"]], "numof_references() (pypath.core.annot.opm method)": [[68, "pypath.core.annot.Opm.numof_references"]], "process() (pypath.core.annot.opm method)": [[68, "pypath.core.annot.Opm.process"]], "reload() (pypath.core.annot.opm method)": [[68, "pypath.core.annot.Opm.reload"]], "select() (pypath.core.annot.opm method)": [[68, "pypath.core.annot.Opm.select"]], "set_method() (pypath.core.annot.opm method)": [[68, "pypath.core.annot.Opm.set_method"]], "set_reference_set() (pypath.core.annot.opm method)": [[68, "pypath.core.annot.Opm.set_reference_set"]], "show() (pypath.core.annot.opm method)": [[68, "pypath.core.annot.Opm.show"]], "subset_intersection() (pypath.core.annot.opm method)": [[68, "pypath.core.annot.Opm.subset_intersection"]], "to_array() (pypath.core.annot.opm method)": [[68, "pypath.core.annot.Opm.to_array"]], "to_bool_array() (pypath.core.annot.opm method)": [[68, "pypath.core.annot.Opm.to_bool_array"]], "to_set() (pypath.core.annot.opm method)": [[68, "pypath.core.annot.Opm.to_set"]], "panglaodb (class in pypath.core.annot)": [[69, "pypath.core.annot.Panglaodb"]], "__init__() (pypath.core.annot.panglaodb method)": [[69, "pypath.core.annot.Panglaodb.__init__"]], "add_complexes_by_inference() (pypath.core.annot.panglaodb method)": [[69, "pypath.core.annot.Panglaodb.add_complexes_by_inference"]], "all_complexes() (pypath.core.annot.panglaodb method)": [[69, "pypath.core.annot.Panglaodb.all_complexes"]], "all_entities() (pypath.core.annot.panglaodb method)": [[69, "pypath.core.annot.Panglaodb.all_entities"]], "all_mirnas() (pypath.core.annot.panglaodb method)": [[69, "pypath.core.annot.Panglaodb.all_mirnas"]], "all_proteins() (pypath.core.annot.panglaodb method)": [[69, "pypath.core.annot.Panglaodb.all_proteins"]], "all_refs() (pypath.core.annot.panglaodb method)": [[69, "pypath.core.annot.Panglaodb.all_refs"]], "annotate_complex() (pypath.core.annot.panglaodb method)": [[69, "pypath.core.annot.Panglaodb.annotate_complex"]], "browse() (pypath.core.annot.panglaodb method)": [[69, "pypath.core.annot.Panglaodb.browse"]], "complex_inference() (pypath.core.annot.panglaodb method)": [[69, "pypath.core.annot.Panglaodb.complex_inference"]], "coverage() (pypath.core.annot.panglaodb method)": [[69, "pypath.core.annot.Panglaodb.coverage"]], "curation_effort() (pypath.core.annot.panglaodb method)": [[69, "pypath.core.annot.Panglaodb.curation_effort"]], "get_names() (pypath.core.annot.panglaodb method)": [[69, "pypath.core.annot.Panglaodb.get_names"]], "get_reference_set() (pypath.core.annot.panglaodb static method)": [[69, "pypath.core.annot.Panglaodb.get_reference_set"]], "get_subset() (pypath.core.annot.panglaodb method)": [[69, "pypath.core.annot.Panglaodb.get_subset"]], "get_subset_bool_array() (pypath.core.annot.panglaodb method)": [[69, "pypath.core.annot.Panglaodb.get_subset_bool_array"]], "get_values() (pypath.core.annot.panglaodb method)": [[69, "pypath.core.annot.Panglaodb.get_values"]], "labels() (pypath.core.annot.panglaodb method)": [[69, "pypath.core.annot.Panglaodb.labels"]], "load() (pypath.core.annot.panglaodb method)": [[69, "pypath.core.annot.Panglaodb.load"]], "load_data() (pypath.core.annot.panglaodb method)": [[69, "pypath.core.annot.Panglaodb.load_data"]], "load_proteins() (pypath.core.annot.panglaodb method)": [[69, "pypath.core.annot.Panglaodb.load_proteins"]], "make_df() (pypath.core.annot.panglaodb method)": [[69, "pypath.core.annot.Panglaodb.make_df"]], "numof_entities() (pypath.core.annot.panglaodb method)": [[69, "pypath.core.annot.Panglaodb.numof_entities"]], "numof_records() (pypath.core.annot.panglaodb method)": [[69, "pypath.core.annot.Panglaodb.numof_records"]], "numof_references() (pypath.core.annot.panglaodb method)": [[69, "pypath.core.annot.Panglaodb.numof_references"]], "process() (pypath.core.annot.panglaodb method)": [[69, "pypath.core.annot.Panglaodb.process"]], "reload() (pypath.core.annot.panglaodb method)": [[69, "pypath.core.annot.Panglaodb.reload"]], "select() (pypath.core.annot.panglaodb method)": [[69, "pypath.core.annot.Panglaodb.select"]], "set_method() (pypath.core.annot.panglaodb method)": [[69, "pypath.core.annot.Panglaodb.set_method"]], "set_reference_set() (pypath.core.annot.panglaodb method)": [[69, "pypath.core.annot.Panglaodb.set_reference_set"]], "show() (pypath.core.annot.panglaodb method)": [[69, "pypath.core.annot.Panglaodb.show"]], "subset_intersection() (pypath.core.annot.panglaodb method)": [[69, "pypath.core.annot.Panglaodb.subset_intersection"]], "to_array() (pypath.core.annot.panglaodb method)": [[69, "pypath.core.annot.Panglaodb.to_array"]], "to_bool_array() (pypath.core.annot.panglaodb method)": [[69, "pypath.core.annot.Panglaodb.to_bool_array"]], "to_set() (pypath.core.annot.panglaodb method)": [[69, "pypath.core.annot.Panglaodb.to_set"]], "phobius (class in pypath.core.annot)": [[70, "pypath.core.annot.Phobius"]], "__init__() (pypath.core.annot.phobius method)": [[70, "pypath.core.annot.Phobius.__init__"]], "add_complexes_by_inference() (pypath.core.annot.phobius method)": [[70, "pypath.core.annot.Phobius.add_complexes_by_inference"]], "all_complexes() (pypath.core.annot.phobius method)": [[70, "pypath.core.annot.Phobius.all_complexes"]], "all_entities() (pypath.core.annot.phobius method)": [[70, "pypath.core.annot.Phobius.all_entities"]], "all_mirnas() (pypath.core.annot.phobius method)": [[70, "pypath.core.annot.Phobius.all_mirnas"]], "all_proteins() (pypath.core.annot.phobius method)": [[70, "pypath.core.annot.Phobius.all_proteins"]], "all_refs() (pypath.core.annot.phobius method)": [[70, "pypath.core.annot.Phobius.all_refs"]], "annotate_complex() (pypath.core.annot.phobius method)": [[70, "pypath.core.annot.Phobius.annotate_complex"]], "browse() (pypath.core.annot.phobius method)": [[70, "pypath.core.annot.Phobius.browse"]], "complex_inference() (pypath.core.annot.phobius method)": [[70, "pypath.core.annot.Phobius.complex_inference"]], "coverage() (pypath.core.annot.phobius method)": [[70, "pypath.core.annot.Phobius.coverage"]], "curation_effort() (pypath.core.annot.phobius method)": [[70, "pypath.core.annot.Phobius.curation_effort"]], "get_names() (pypath.core.annot.phobius method)": [[70, "pypath.core.annot.Phobius.get_names"]], "get_reference_set() (pypath.core.annot.phobius static method)": [[70, "pypath.core.annot.Phobius.get_reference_set"]], "get_subset() (pypath.core.annot.phobius method)": [[70, "pypath.core.annot.Phobius.get_subset"]], "get_subset_bool_array() (pypath.core.annot.phobius method)": [[70, "pypath.core.annot.Phobius.get_subset_bool_array"]], "get_values() (pypath.core.annot.phobius method)": [[70, "pypath.core.annot.Phobius.get_values"]], "labels() (pypath.core.annot.phobius method)": [[70, "pypath.core.annot.Phobius.labels"]], "load() (pypath.core.annot.phobius method)": [[70, "pypath.core.annot.Phobius.load"]], "load_data() (pypath.core.annot.phobius method)": [[70, "pypath.core.annot.Phobius.load_data"]], "load_proteins() (pypath.core.annot.phobius method)": [[70, "pypath.core.annot.Phobius.load_proteins"]], "make_df() (pypath.core.annot.phobius method)": [[70, "pypath.core.annot.Phobius.make_df"]], "numof_entities() (pypath.core.annot.phobius method)": [[70, "pypath.core.annot.Phobius.numof_entities"]], "numof_records() (pypath.core.annot.phobius method)": [[70, "pypath.core.annot.Phobius.numof_records"]], "numof_references() (pypath.core.annot.phobius method)": [[70, "pypath.core.annot.Phobius.numof_references"]], "process() (pypath.core.annot.phobius method)": [[70, "pypath.core.annot.Phobius.process"]], "reload() (pypath.core.annot.phobius method)": [[70, "pypath.core.annot.Phobius.reload"]], "select() (pypath.core.annot.phobius method)": [[70, "pypath.core.annot.Phobius.select"]], "set_method() (pypath.core.annot.phobius method)": [[70, "pypath.core.annot.Phobius.set_method"]], "set_reference_set() (pypath.core.annot.phobius method)": [[70, "pypath.core.annot.Phobius.set_reference_set"]], "show() (pypath.core.annot.phobius method)": [[70, "pypath.core.annot.Phobius.show"]], "subset_intersection() (pypath.core.annot.phobius method)": [[70, "pypath.core.annot.Phobius.subset_intersection"]], "to_array() (pypath.core.annot.phobius method)": [[70, "pypath.core.annot.Phobius.to_array"]], "to_bool_array() (pypath.core.annot.phobius method)": [[70, "pypath.core.annot.Phobius.to_bool_array"]], "to_set() (pypath.core.annot.phobius method)": [[70, "pypath.core.annot.Phobius.to_set"]], "phosphatome (class in pypath.core.annot)": [[71, "pypath.core.annot.Phosphatome"]], "__init__() (pypath.core.annot.phosphatome method)": [[71, "pypath.core.annot.Phosphatome.__init__"]], "add_complexes_by_inference() (pypath.core.annot.phosphatome method)": [[71, "pypath.core.annot.Phosphatome.add_complexes_by_inference"]], "all_complexes() (pypath.core.annot.phosphatome method)": [[71, "pypath.core.annot.Phosphatome.all_complexes"]], "all_entities() (pypath.core.annot.phosphatome method)": [[71, "pypath.core.annot.Phosphatome.all_entities"]], "all_mirnas() (pypath.core.annot.phosphatome method)": [[71, "pypath.core.annot.Phosphatome.all_mirnas"]], "all_proteins() (pypath.core.annot.phosphatome method)": [[71, "pypath.core.annot.Phosphatome.all_proteins"]], "all_refs() (pypath.core.annot.phosphatome method)": [[71, "pypath.core.annot.Phosphatome.all_refs"]], "annotate_complex() (pypath.core.annot.phosphatome method)": [[71, "pypath.core.annot.Phosphatome.annotate_complex"]], "browse() (pypath.core.annot.phosphatome method)": [[71, "pypath.core.annot.Phosphatome.browse"]], "complex_inference() (pypath.core.annot.phosphatome method)": [[71, "pypath.core.annot.Phosphatome.complex_inference"]], "coverage() (pypath.core.annot.phosphatome method)": [[71, "pypath.core.annot.Phosphatome.coverage"]], "curation_effort() (pypath.core.annot.phosphatome method)": [[71, "pypath.core.annot.Phosphatome.curation_effort"]], "get_names() (pypath.core.annot.phosphatome method)": [[71, "pypath.core.annot.Phosphatome.get_names"]], "get_reference_set() (pypath.core.annot.phosphatome static method)": [[71, "pypath.core.annot.Phosphatome.get_reference_set"]], "get_subset() (pypath.core.annot.phosphatome method)": [[71, "pypath.core.annot.Phosphatome.get_subset"]], "get_subset_bool_array() (pypath.core.annot.phosphatome method)": [[71, "pypath.core.annot.Phosphatome.get_subset_bool_array"]], "get_values() (pypath.core.annot.phosphatome method)": [[71, "pypath.core.annot.Phosphatome.get_values"]], "labels() (pypath.core.annot.phosphatome method)": [[71, "pypath.core.annot.Phosphatome.labels"]], "load() (pypath.core.annot.phosphatome method)": [[71, "pypath.core.annot.Phosphatome.load"]], "load_data() (pypath.core.annot.phosphatome method)": [[71, "pypath.core.annot.Phosphatome.load_data"]], "load_proteins() (pypath.core.annot.phosphatome method)": [[71, "pypath.core.annot.Phosphatome.load_proteins"]], "make_df() (pypath.core.annot.phosphatome method)": [[71, "pypath.core.annot.Phosphatome.make_df"]], "numof_entities() (pypath.core.annot.phosphatome method)": [[71, "pypath.core.annot.Phosphatome.numof_entities"]], "numof_records() (pypath.core.annot.phosphatome method)": [[71, "pypath.core.annot.Phosphatome.numof_records"]], "numof_references() (pypath.core.annot.phosphatome method)": [[71, "pypath.core.annot.Phosphatome.numof_references"]], "process() (pypath.core.annot.phosphatome method)": [[71, "pypath.core.annot.Phosphatome.process"]], "reload() (pypath.core.annot.phosphatome method)": [[71, "pypath.core.annot.Phosphatome.reload"]], "select() (pypath.core.annot.phosphatome method)": [[71, "pypath.core.annot.Phosphatome.select"]], "set_method() (pypath.core.annot.phosphatome method)": [[71, "pypath.core.annot.Phosphatome.set_method"]], "set_reference_set() (pypath.core.annot.phosphatome method)": [[71, "pypath.core.annot.Phosphatome.set_reference_set"]], "show() (pypath.core.annot.phosphatome method)": [[71, "pypath.core.annot.Phosphatome.show"]], "subset_intersection() (pypath.core.annot.phosphatome method)": [[71, "pypath.core.annot.Phosphatome.subset_intersection"]], "to_array() (pypath.core.annot.phosphatome method)": [[71, "pypath.core.annot.Phosphatome.to_array"]], "to_bool_array() (pypath.core.annot.phosphatome method)": [[71, "pypath.core.annot.Phosphatome.to_bool_array"]], "to_set() (pypath.core.annot.phosphatome method)": [[71, "pypath.core.annot.Phosphatome.to_set"]], "progeny (class in pypath.core.annot)": [[72, "pypath.core.annot.Progeny"]], "__init__() (pypath.core.annot.progeny method)": [[72, "pypath.core.annot.Progeny.__init__"]], "add_complexes_by_inference() (pypath.core.annot.progeny method)": [[72, "pypath.core.annot.Progeny.add_complexes_by_inference"]], "all_complexes() (pypath.core.annot.progeny method)": [[72, "pypath.core.annot.Progeny.all_complexes"]], "all_entities() (pypath.core.annot.progeny method)": [[72, "pypath.core.annot.Progeny.all_entities"]], "all_mirnas() (pypath.core.annot.progeny method)": [[72, "pypath.core.annot.Progeny.all_mirnas"]], "all_proteins() (pypath.core.annot.progeny method)": [[72, "pypath.core.annot.Progeny.all_proteins"]], "all_refs() (pypath.core.annot.progeny method)": [[72, "pypath.core.annot.Progeny.all_refs"]], "annotate_complex() (pypath.core.annot.progeny method)": [[72, "pypath.core.annot.Progeny.annotate_complex"]], "browse() (pypath.core.annot.progeny method)": [[72, "pypath.core.annot.Progeny.browse"]], "complex_inference() (pypath.core.annot.progeny method)": [[72, "pypath.core.annot.Progeny.complex_inference"]], "coverage() (pypath.core.annot.progeny method)": [[72, "pypath.core.annot.Progeny.coverage"]], "curation_effort() (pypath.core.annot.progeny method)": [[72, "pypath.core.annot.Progeny.curation_effort"]], "get_names() (pypath.core.annot.progeny method)": [[72, "pypath.core.annot.Progeny.get_names"]], "get_reference_set() (pypath.core.annot.progeny static method)": [[72, "pypath.core.annot.Progeny.get_reference_set"]], "get_subset() (pypath.core.annot.progeny method)": [[72, "pypath.core.annot.Progeny.get_subset"]], "get_subset_bool_array() (pypath.core.annot.progeny method)": [[72, "pypath.core.annot.Progeny.get_subset_bool_array"]], "get_values() (pypath.core.annot.progeny method)": [[72, "pypath.core.annot.Progeny.get_values"]], "labels() (pypath.core.annot.progeny method)": [[72, "pypath.core.annot.Progeny.labels"]], "load() (pypath.core.annot.progeny method)": [[72, "pypath.core.annot.Progeny.load"]], "load_data() (pypath.core.annot.progeny method)": [[72, "pypath.core.annot.Progeny.load_data"]], "load_proteins() (pypath.core.annot.progeny method)": [[72, "pypath.core.annot.Progeny.load_proteins"]], "make_df() (pypath.core.annot.progeny method)": [[72, "pypath.core.annot.Progeny.make_df"]], "numof_entities() (pypath.core.annot.progeny method)": [[72, "pypath.core.annot.Progeny.numof_entities"]], "numof_records() (pypath.core.annot.progeny method)": [[72, "pypath.core.annot.Progeny.numof_records"]], "numof_references() (pypath.core.annot.progeny method)": [[72, "pypath.core.annot.Progeny.numof_references"]], "process() (pypath.core.annot.progeny method)": [[72, "pypath.core.annot.Progeny.process"]], "reload() (pypath.core.annot.progeny method)": [[72, "pypath.core.annot.Progeny.reload"]], "select() (pypath.core.annot.progeny method)": [[72, "pypath.core.annot.Progeny.select"]], "set_method() (pypath.core.annot.progeny method)": [[72, "pypath.core.annot.Progeny.set_method"]], "set_reference_set() (pypath.core.annot.progeny method)": [[72, "pypath.core.annot.Progeny.set_reference_set"]], "show() (pypath.core.annot.progeny method)": [[72, "pypath.core.annot.Progeny.show"]], "subset_intersection() (pypath.core.annot.progeny method)": [[72, "pypath.core.annot.Progeny.subset_intersection"]], "to_array() (pypath.core.annot.progeny method)": [[72, "pypath.core.annot.Progeny.to_array"]], "to_bool_array() (pypath.core.annot.progeny method)": [[72, "pypath.core.annot.Progeny.to_bool_array"]], "to_set() (pypath.core.annot.progeny method)": [[72, "pypath.core.annot.Progeny.to_set"]], "ramilowski2015 (class in pypath.core.annot)": [[73, "pypath.core.annot.Ramilowski2015"]], "__init__() (pypath.core.annot.ramilowski2015 method)": [[73, "pypath.core.annot.Ramilowski2015.__init__"]], "add_complexes_by_inference() (pypath.core.annot.ramilowski2015 method)": [[73, "pypath.core.annot.Ramilowski2015.add_complexes_by_inference"]], "all_complexes() (pypath.core.annot.ramilowski2015 method)": [[73, "pypath.core.annot.Ramilowski2015.all_complexes"]], "all_entities() (pypath.core.annot.ramilowski2015 method)": [[73, "pypath.core.annot.Ramilowski2015.all_entities"]], "all_mirnas() (pypath.core.annot.ramilowski2015 method)": [[73, "pypath.core.annot.Ramilowski2015.all_mirnas"]], "all_proteins() (pypath.core.annot.ramilowski2015 method)": [[73, "pypath.core.annot.Ramilowski2015.all_proteins"]], "all_refs() (pypath.core.annot.ramilowski2015 method)": [[73, "pypath.core.annot.Ramilowski2015.all_refs"]], "annotate_complex() (pypath.core.annot.ramilowski2015 method)": [[73, "pypath.core.annot.Ramilowski2015.annotate_complex"]], "browse() (pypath.core.annot.ramilowski2015 method)": [[73, "pypath.core.annot.Ramilowski2015.browse"]], "complex_inference() (pypath.core.annot.ramilowski2015 method)": [[73, "pypath.core.annot.Ramilowski2015.complex_inference"]], "coverage() (pypath.core.annot.ramilowski2015 method)": [[73, "pypath.core.annot.Ramilowski2015.coverage"]], "curation_effort() (pypath.core.annot.ramilowski2015 method)": [[73, "pypath.core.annot.Ramilowski2015.curation_effort"]], "get_names() (pypath.core.annot.ramilowski2015 method)": [[73, "pypath.core.annot.Ramilowski2015.get_names"]], "get_reference_set() (pypath.core.annot.ramilowski2015 static method)": [[73, "pypath.core.annot.Ramilowski2015.get_reference_set"]], "get_subset() (pypath.core.annot.ramilowski2015 method)": [[73, "pypath.core.annot.Ramilowski2015.get_subset"]], "get_subset_bool_array() (pypath.core.annot.ramilowski2015 method)": [[73, "pypath.core.annot.Ramilowski2015.get_subset_bool_array"]], "get_values() (pypath.core.annot.ramilowski2015 method)": [[73, "pypath.core.annot.Ramilowski2015.get_values"]], "labels() (pypath.core.annot.ramilowski2015 method)": [[73, "pypath.core.annot.Ramilowski2015.labels"]], "load() (pypath.core.annot.ramilowski2015 method)": [[73, "pypath.core.annot.Ramilowski2015.load"]], "load_data() (pypath.core.annot.ramilowski2015 method)": [[73, "pypath.core.annot.Ramilowski2015.load_data"]], "load_proteins() (pypath.core.annot.ramilowski2015 method)": [[73, "pypath.core.annot.Ramilowski2015.load_proteins"]], "make_df() (pypath.core.annot.ramilowski2015 method)": [[73, "pypath.core.annot.Ramilowski2015.make_df"]], "numof_entities() (pypath.core.annot.ramilowski2015 method)": [[73, "pypath.core.annot.Ramilowski2015.numof_entities"]], "numof_records() (pypath.core.annot.ramilowski2015 method)": [[73, "pypath.core.annot.Ramilowski2015.numof_records"]], "numof_references() (pypath.core.annot.ramilowski2015 method)": [[73, "pypath.core.annot.Ramilowski2015.numof_references"]], "process() (pypath.core.annot.ramilowski2015 method)": [[73, "pypath.core.annot.Ramilowski2015.process"]], "reload() (pypath.core.annot.ramilowski2015 method)": [[73, "pypath.core.annot.Ramilowski2015.reload"]], "select() (pypath.core.annot.ramilowski2015 method)": [[73, "pypath.core.annot.Ramilowski2015.select"]], "set_method() (pypath.core.annot.ramilowski2015 method)": [[73, "pypath.core.annot.Ramilowski2015.set_method"]], "set_reference_set() (pypath.core.annot.ramilowski2015 method)": [[73, "pypath.core.annot.Ramilowski2015.set_reference_set"]], "show() (pypath.core.annot.ramilowski2015 method)": [[73, "pypath.core.annot.Ramilowski2015.show"]], "subset_intersection() (pypath.core.annot.ramilowski2015 method)": [[73, "pypath.core.annot.Ramilowski2015.subset_intersection"]], "to_array() (pypath.core.annot.ramilowski2015 method)": [[73, "pypath.core.annot.Ramilowski2015.to_array"]], "to_bool_array() (pypath.core.annot.ramilowski2015 method)": [[73, "pypath.core.annot.Ramilowski2015.to_bool_array"]], "to_set() (pypath.core.annot.ramilowski2015 method)": [[73, "pypath.core.annot.Ramilowski2015.to_set"]], "ramilowski2015location (class in pypath.core.annot)": [[74, "pypath.core.annot.Ramilowski2015Location"]], "__init__() (pypath.core.annot.ramilowski2015location method)": [[74, "pypath.core.annot.Ramilowski2015Location.__init__"]], "add_complexes_by_inference() (pypath.core.annot.ramilowski2015location method)": [[74, "pypath.core.annot.Ramilowski2015Location.add_complexes_by_inference"]], "all_complexes() (pypath.core.annot.ramilowski2015location method)": [[74, "pypath.core.annot.Ramilowski2015Location.all_complexes"]], "all_entities() (pypath.core.annot.ramilowski2015location method)": [[74, "pypath.core.annot.Ramilowski2015Location.all_entities"]], "all_mirnas() (pypath.core.annot.ramilowski2015location method)": [[74, "pypath.core.annot.Ramilowski2015Location.all_mirnas"]], "all_proteins() (pypath.core.annot.ramilowski2015location method)": [[74, "pypath.core.annot.Ramilowski2015Location.all_proteins"]], "all_refs() (pypath.core.annot.ramilowski2015location method)": [[74, "pypath.core.annot.Ramilowski2015Location.all_refs"]], "annotate_complex() (pypath.core.annot.ramilowski2015location method)": [[74, "pypath.core.annot.Ramilowski2015Location.annotate_complex"]], "browse() (pypath.core.annot.ramilowski2015location method)": [[74, "pypath.core.annot.Ramilowski2015Location.browse"]], "complex_inference() (pypath.core.annot.ramilowski2015location method)": [[74, "pypath.core.annot.Ramilowski2015Location.complex_inference"]], "coverage() (pypath.core.annot.ramilowski2015location method)": [[74, "pypath.core.annot.Ramilowski2015Location.coverage"]], "curation_effort() (pypath.core.annot.ramilowski2015location method)": [[74, "pypath.core.annot.Ramilowski2015Location.curation_effort"]], "get_names() (pypath.core.annot.ramilowski2015location method)": [[74, "pypath.core.annot.Ramilowski2015Location.get_names"]], "get_reference_set() (pypath.core.annot.ramilowski2015location static method)": [[74, "pypath.core.annot.Ramilowski2015Location.get_reference_set"]], "get_subset() (pypath.core.annot.ramilowski2015location method)": [[74, "pypath.core.annot.Ramilowski2015Location.get_subset"]], "get_subset_bool_array() (pypath.core.annot.ramilowski2015location method)": [[74, "pypath.core.annot.Ramilowski2015Location.get_subset_bool_array"]], "get_values() (pypath.core.annot.ramilowski2015location method)": [[74, "pypath.core.annot.Ramilowski2015Location.get_values"]], "labels() (pypath.core.annot.ramilowski2015location method)": [[74, "pypath.core.annot.Ramilowski2015Location.labels"]], "load() (pypath.core.annot.ramilowski2015location method)": [[74, "pypath.core.annot.Ramilowski2015Location.load"]], "load_data() (pypath.core.annot.ramilowski2015location method)": [[74, "pypath.core.annot.Ramilowski2015Location.load_data"]], "load_proteins() (pypath.core.annot.ramilowski2015location method)": [[74, "pypath.core.annot.Ramilowski2015Location.load_proteins"]], "make_df() (pypath.core.annot.ramilowski2015location method)": [[74, "pypath.core.annot.Ramilowski2015Location.make_df"]], "numof_entities() (pypath.core.annot.ramilowski2015location method)": [[74, "pypath.core.annot.Ramilowski2015Location.numof_entities"]], "numof_records() (pypath.core.annot.ramilowski2015location method)": [[74, "pypath.core.annot.Ramilowski2015Location.numof_records"]], "numof_references() (pypath.core.annot.ramilowski2015location method)": [[74, "pypath.core.annot.Ramilowski2015Location.numof_references"]], "process() (pypath.core.annot.ramilowski2015location method)": [[74, "pypath.core.annot.Ramilowski2015Location.process"]], "reload() (pypath.core.annot.ramilowski2015location method)": [[74, "pypath.core.annot.Ramilowski2015Location.reload"]], "select() (pypath.core.annot.ramilowski2015location method)": [[74, "pypath.core.annot.Ramilowski2015Location.select"]], "set_method() (pypath.core.annot.ramilowski2015location method)": [[74, "pypath.core.annot.Ramilowski2015Location.set_method"]], "set_reference_set() (pypath.core.annot.ramilowski2015location method)": [[74, "pypath.core.annot.Ramilowski2015Location.set_reference_set"]], "show() (pypath.core.annot.ramilowski2015location method)": [[74, "pypath.core.annot.Ramilowski2015Location.show"]], "subset_intersection() (pypath.core.annot.ramilowski2015location method)": [[74, "pypath.core.annot.Ramilowski2015Location.subset_intersection"]], "to_array() (pypath.core.annot.ramilowski2015location method)": [[74, "pypath.core.annot.Ramilowski2015Location.to_array"]], "to_bool_array() (pypath.core.annot.ramilowski2015location method)": [[74, "pypath.core.annot.Ramilowski2015Location.to_bool_array"]], "to_set() (pypath.core.annot.ramilowski2015location method)": [[74, "pypath.core.annot.Ramilowski2015Location.to_set"]], "scconnect (class in pypath.core.annot)": [[75, "pypath.core.annot.Scconnect"]], "__init__() (pypath.core.annot.scconnect method)": [[75, "pypath.core.annot.Scconnect.__init__"]], "add_complexes_by_inference() (pypath.core.annot.scconnect method)": [[75, "pypath.core.annot.Scconnect.add_complexes_by_inference"]], "all_complexes() (pypath.core.annot.scconnect method)": [[75, "pypath.core.annot.Scconnect.all_complexes"]], "all_entities() (pypath.core.annot.scconnect method)": [[75, "pypath.core.annot.Scconnect.all_entities"]], "all_mirnas() (pypath.core.annot.scconnect method)": [[75, "pypath.core.annot.Scconnect.all_mirnas"]], "all_proteins() (pypath.core.annot.scconnect method)": [[75, "pypath.core.annot.Scconnect.all_proteins"]], "all_refs() (pypath.core.annot.scconnect method)": [[75, "pypath.core.annot.Scconnect.all_refs"]], "annotate_complex() (pypath.core.annot.scconnect method)": [[75, "pypath.core.annot.Scconnect.annotate_complex"]], "browse() (pypath.core.annot.scconnect method)": [[75, "pypath.core.annot.Scconnect.browse"]], "complex_inference() (pypath.core.annot.scconnect method)": [[75, "pypath.core.annot.Scconnect.complex_inference"]], "coverage() (pypath.core.annot.scconnect method)": [[75, "pypath.core.annot.Scconnect.coverage"]], "curation_effort() (pypath.core.annot.scconnect method)": [[75, "pypath.core.annot.Scconnect.curation_effort"]], "get_names() (pypath.core.annot.scconnect method)": [[75, "pypath.core.annot.Scconnect.get_names"]], "get_reference_set() (pypath.core.annot.scconnect static method)": [[75, "pypath.core.annot.Scconnect.get_reference_set"]], "get_subset() (pypath.core.annot.scconnect method)": [[75, "pypath.core.annot.Scconnect.get_subset"]], "get_subset_bool_array() (pypath.core.annot.scconnect method)": [[75, "pypath.core.annot.Scconnect.get_subset_bool_array"]], "get_values() (pypath.core.annot.scconnect method)": [[75, "pypath.core.annot.Scconnect.get_values"]], "labels() (pypath.core.annot.scconnect method)": [[75, "pypath.core.annot.Scconnect.labels"]], "load() (pypath.core.annot.scconnect method)": [[75, "pypath.core.annot.Scconnect.load"]], "load_data() (pypath.core.annot.scconnect method)": [[75, "pypath.core.annot.Scconnect.load_data"]], "load_proteins() (pypath.core.annot.scconnect method)": [[75, "pypath.core.annot.Scconnect.load_proteins"]], "make_df() (pypath.core.annot.scconnect method)": [[75, "pypath.core.annot.Scconnect.make_df"]], "numof_entities() (pypath.core.annot.scconnect method)": [[75, "pypath.core.annot.Scconnect.numof_entities"]], "numof_records() (pypath.core.annot.scconnect method)": [[75, "pypath.core.annot.Scconnect.numof_records"]], "numof_references() (pypath.core.annot.scconnect method)": [[75, "pypath.core.annot.Scconnect.numof_references"]], "process() (pypath.core.annot.scconnect method)": [[75, "pypath.core.annot.Scconnect.process"]], "reload() (pypath.core.annot.scconnect method)": [[75, "pypath.core.annot.Scconnect.reload"]], "select() (pypath.core.annot.scconnect method)": [[75, "pypath.core.annot.Scconnect.select"]], "set_method() (pypath.core.annot.scconnect method)": [[75, "pypath.core.annot.Scconnect.set_method"]], "set_reference_set() (pypath.core.annot.scconnect method)": [[75, "pypath.core.annot.Scconnect.set_reference_set"]], "show() (pypath.core.annot.scconnect method)": [[75, "pypath.core.annot.Scconnect.show"]], "subset_intersection() (pypath.core.annot.scconnect method)": [[75, "pypath.core.annot.Scconnect.subset_intersection"]], "to_array() (pypath.core.annot.scconnect method)": [[75, "pypath.core.annot.Scconnect.to_array"]], "to_bool_array() (pypath.core.annot.scconnect method)": [[75, "pypath.core.annot.Scconnect.to_bool_array"]], "to_set() (pypath.core.annot.scconnect method)": [[75, "pypath.core.annot.Scconnect.to_set"]], "scconnectcomplex (class in pypath.core.annot)": [[76, "pypath.core.annot.ScconnectComplex"]], "__init__() (pypath.core.annot.scconnectcomplex method)": [[76, "pypath.core.annot.ScconnectComplex.__init__"]], "add_complexes_by_inference() (pypath.core.annot.scconnectcomplex method)": [[76, "pypath.core.annot.ScconnectComplex.add_complexes_by_inference"]], "all_complexes() (pypath.core.annot.scconnectcomplex method)": [[76, "pypath.core.annot.ScconnectComplex.all_complexes"]], "all_entities() (pypath.core.annot.scconnectcomplex method)": [[76, "pypath.core.annot.ScconnectComplex.all_entities"]], "all_mirnas() (pypath.core.annot.scconnectcomplex method)": [[76, "pypath.core.annot.ScconnectComplex.all_mirnas"]], "all_proteins() (pypath.core.annot.scconnectcomplex method)": [[76, "pypath.core.annot.ScconnectComplex.all_proteins"]], "all_refs() (pypath.core.annot.scconnectcomplex method)": [[76, "pypath.core.annot.ScconnectComplex.all_refs"]], "annotate_complex() (pypath.core.annot.scconnectcomplex method)": [[76, "pypath.core.annot.ScconnectComplex.annotate_complex"]], "browse() (pypath.core.annot.scconnectcomplex method)": [[76, "pypath.core.annot.ScconnectComplex.browse"]], "complex_inference() (pypath.core.annot.scconnectcomplex method)": [[76, "pypath.core.annot.ScconnectComplex.complex_inference"]], "coverage() (pypath.core.annot.scconnectcomplex method)": [[76, "pypath.core.annot.ScconnectComplex.coverage"]], "curation_effort() (pypath.core.annot.scconnectcomplex method)": [[76, "pypath.core.annot.ScconnectComplex.curation_effort"]], "get_names() (pypath.core.annot.scconnectcomplex method)": [[76, "pypath.core.annot.ScconnectComplex.get_names"]], "get_reference_set() (pypath.core.annot.scconnectcomplex static method)": [[76, "pypath.core.annot.ScconnectComplex.get_reference_set"]], "get_subset() (pypath.core.annot.scconnectcomplex method)": [[76, "pypath.core.annot.ScconnectComplex.get_subset"]], "get_subset_bool_array() (pypath.core.annot.scconnectcomplex method)": [[76, "pypath.core.annot.ScconnectComplex.get_subset_bool_array"]], "get_values() (pypath.core.annot.scconnectcomplex method)": [[76, "pypath.core.annot.ScconnectComplex.get_values"]], "labels() (pypath.core.annot.scconnectcomplex method)": [[76, "pypath.core.annot.ScconnectComplex.labels"]], "load() (pypath.core.annot.scconnectcomplex method)": [[76, "pypath.core.annot.ScconnectComplex.load"]], "load_data() (pypath.core.annot.scconnectcomplex method)": [[76, "pypath.core.annot.ScconnectComplex.load_data"]], "load_proteins() (pypath.core.annot.scconnectcomplex method)": [[76, "pypath.core.annot.ScconnectComplex.load_proteins"]], "make_df() (pypath.core.annot.scconnectcomplex method)": [[76, "pypath.core.annot.ScconnectComplex.make_df"]], "numof_entities() (pypath.core.annot.scconnectcomplex method)": [[76, "pypath.core.annot.ScconnectComplex.numof_entities"]], "numof_records() (pypath.core.annot.scconnectcomplex method)": [[76, "pypath.core.annot.ScconnectComplex.numof_records"]], "numof_references() (pypath.core.annot.scconnectcomplex method)": [[76, "pypath.core.annot.ScconnectComplex.numof_references"]], "process() (pypath.core.annot.scconnectcomplex method)": [[76, "pypath.core.annot.ScconnectComplex.process"]], "reload() (pypath.core.annot.scconnectcomplex method)": [[76, "pypath.core.annot.ScconnectComplex.reload"]], "select() (pypath.core.annot.scconnectcomplex method)": [[76, "pypath.core.annot.ScconnectComplex.select"]], "set_method() (pypath.core.annot.scconnectcomplex method)": [[76, "pypath.core.annot.ScconnectComplex.set_method"]], "set_reference_set() (pypath.core.annot.scconnectcomplex method)": [[76, "pypath.core.annot.ScconnectComplex.set_reference_set"]], "show() (pypath.core.annot.scconnectcomplex method)": [[76, "pypath.core.annot.ScconnectComplex.show"]], "subset_intersection() (pypath.core.annot.scconnectcomplex method)": [[76, "pypath.core.annot.ScconnectComplex.subset_intersection"]], "to_array() (pypath.core.annot.scconnectcomplex method)": [[76, "pypath.core.annot.ScconnectComplex.to_array"]], "to_bool_array() (pypath.core.annot.scconnectcomplex method)": [[76, "pypath.core.annot.ScconnectComplex.to_bool_array"]], "to_set() (pypath.core.annot.scconnectcomplex method)": [[76, "pypath.core.annot.ScconnectComplex.to_set"]], "signalinkfunctions (class in pypath.core.annot)": [[77, "pypath.core.annot.SignalinkFunctions"]], "__init__() (pypath.core.annot.signalinkfunctions method)": [[77, "pypath.core.annot.SignalinkFunctions.__init__"]], "add_complexes_by_inference() (pypath.core.annot.signalinkfunctions method)": [[77, "pypath.core.annot.SignalinkFunctions.add_complexes_by_inference"]], "all_complexes() (pypath.core.annot.signalinkfunctions method)": [[77, "pypath.core.annot.SignalinkFunctions.all_complexes"]], "all_entities() (pypath.core.annot.signalinkfunctions method)": [[77, "pypath.core.annot.SignalinkFunctions.all_entities"]], "all_mirnas() (pypath.core.annot.signalinkfunctions method)": [[77, "pypath.core.annot.SignalinkFunctions.all_mirnas"]], "all_proteins() (pypath.core.annot.signalinkfunctions method)": [[77, "pypath.core.annot.SignalinkFunctions.all_proteins"]], "all_refs() (pypath.core.annot.signalinkfunctions method)": [[77, "pypath.core.annot.SignalinkFunctions.all_refs"]], "annotate_complex() (pypath.core.annot.signalinkfunctions method)": [[77, "pypath.core.annot.SignalinkFunctions.annotate_complex"]], "browse() (pypath.core.annot.signalinkfunctions method)": [[77, "pypath.core.annot.SignalinkFunctions.browse"]], "complex_inference() (pypath.core.annot.signalinkfunctions method)": [[77, "pypath.core.annot.SignalinkFunctions.complex_inference"]], "coverage() (pypath.core.annot.signalinkfunctions method)": [[77, "pypath.core.annot.SignalinkFunctions.coverage"]], "curation_effort() (pypath.core.annot.signalinkfunctions method)": [[77, "pypath.core.annot.SignalinkFunctions.curation_effort"]], "get_names() (pypath.core.annot.signalinkfunctions method)": [[77, "pypath.core.annot.SignalinkFunctions.get_names"]], "get_reference_set() (pypath.core.annot.signalinkfunctions static method)": [[77, "pypath.core.annot.SignalinkFunctions.get_reference_set"]], "get_subset() (pypath.core.annot.signalinkfunctions method)": [[77, "pypath.core.annot.SignalinkFunctions.get_subset"]], "get_subset_bool_array() (pypath.core.annot.signalinkfunctions method)": [[77, "pypath.core.annot.SignalinkFunctions.get_subset_bool_array"]], "get_values() (pypath.core.annot.signalinkfunctions method)": [[77, "pypath.core.annot.SignalinkFunctions.get_values"]], "labels() (pypath.core.annot.signalinkfunctions method)": [[77, "pypath.core.annot.SignalinkFunctions.labels"]], "load() (pypath.core.annot.signalinkfunctions method)": [[77, "pypath.core.annot.SignalinkFunctions.load"]], "load_data() (pypath.core.annot.signalinkfunctions method)": [[77, "pypath.core.annot.SignalinkFunctions.load_data"]], "load_proteins() (pypath.core.annot.signalinkfunctions method)": [[77, "pypath.core.annot.SignalinkFunctions.load_proteins"]], "make_df() (pypath.core.annot.signalinkfunctions method)": [[77, "pypath.core.annot.SignalinkFunctions.make_df"]], "numof_entities() (pypath.core.annot.signalinkfunctions method)": [[77, "pypath.core.annot.SignalinkFunctions.numof_entities"]], "numof_records() (pypath.core.annot.signalinkfunctions method)": [[77, "pypath.core.annot.SignalinkFunctions.numof_records"]], "numof_references() (pypath.core.annot.signalinkfunctions method)": [[77, "pypath.core.annot.SignalinkFunctions.numof_references"]], "process() (pypath.core.annot.signalinkfunctions method)": [[77, "pypath.core.annot.SignalinkFunctions.process"]], "reload() (pypath.core.annot.signalinkfunctions method)": [[77, "pypath.core.annot.SignalinkFunctions.reload"]], "select() (pypath.core.annot.signalinkfunctions method)": [[77, "pypath.core.annot.SignalinkFunctions.select"]], "set_method() (pypath.core.annot.signalinkfunctions method)": [[77, "pypath.core.annot.SignalinkFunctions.set_method"]], "set_reference_set() (pypath.core.annot.signalinkfunctions method)": [[77, "pypath.core.annot.SignalinkFunctions.set_reference_set"]], "show() (pypath.core.annot.signalinkfunctions method)": [[77, "pypath.core.annot.SignalinkFunctions.show"]], "subset_intersection() (pypath.core.annot.signalinkfunctions method)": [[77, "pypath.core.annot.SignalinkFunctions.subset_intersection"]], "to_array() (pypath.core.annot.signalinkfunctions method)": [[77, "pypath.core.annot.SignalinkFunctions.to_array"]], "to_bool_array() (pypath.core.annot.signalinkfunctions method)": [[77, "pypath.core.annot.SignalinkFunctions.to_bool_array"]], "to_set() (pypath.core.annot.signalinkfunctions method)": [[77, "pypath.core.annot.SignalinkFunctions.to_set"]], "signalinkpathways (class in pypath.core.annot)": [[78, "pypath.core.annot.SignalinkPathways"]], "__init__() (pypath.core.annot.signalinkpathways method)": [[78, "pypath.core.annot.SignalinkPathways.__init__"]], "add_complexes_by_inference() (pypath.core.annot.signalinkpathways method)": [[78, "pypath.core.annot.SignalinkPathways.add_complexes_by_inference"]], "all_complexes() (pypath.core.annot.signalinkpathways method)": [[78, "pypath.core.annot.SignalinkPathways.all_complexes"]], "all_entities() (pypath.core.annot.signalinkpathways method)": [[78, "pypath.core.annot.SignalinkPathways.all_entities"]], "all_mirnas() (pypath.core.annot.signalinkpathways method)": [[78, "pypath.core.annot.SignalinkPathways.all_mirnas"]], "all_proteins() (pypath.core.annot.signalinkpathways method)": [[78, "pypath.core.annot.SignalinkPathways.all_proteins"]], "all_refs() (pypath.core.annot.signalinkpathways method)": [[78, "pypath.core.annot.SignalinkPathways.all_refs"]], "annotate_complex() (pypath.core.annot.signalinkpathways method)": [[78, "pypath.core.annot.SignalinkPathways.annotate_complex"]], "browse() (pypath.core.annot.signalinkpathways method)": [[78, "pypath.core.annot.SignalinkPathways.browse"]], "complex_inference() (pypath.core.annot.signalinkpathways method)": [[78, "pypath.core.annot.SignalinkPathways.complex_inference"]], "coverage() (pypath.core.annot.signalinkpathways method)": [[78, "pypath.core.annot.SignalinkPathways.coverage"]], "curation_effort() (pypath.core.annot.signalinkpathways method)": [[78, "pypath.core.annot.SignalinkPathways.curation_effort"]], "get_names() (pypath.core.annot.signalinkpathways method)": [[78, "pypath.core.annot.SignalinkPathways.get_names"]], "get_reference_set() (pypath.core.annot.signalinkpathways static method)": [[78, "pypath.core.annot.SignalinkPathways.get_reference_set"]], "get_subset() (pypath.core.annot.signalinkpathways method)": [[78, "pypath.core.annot.SignalinkPathways.get_subset"]], "get_subset_bool_array() (pypath.core.annot.signalinkpathways method)": [[78, "pypath.core.annot.SignalinkPathways.get_subset_bool_array"]], "get_values() (pypath.core.annot.signalinkpathways method)": [[78, "pypath.core.annot.SignalinkPathways.get_values"]], "labels() (pypath.core.annot.signalinkpathways method)": [[78, "pypath.core.annot.SignalinkPathways.labels"]], "load() (pypath.core.annot.signalinkpathways method)": [[78, "pypath.core.annot.SignalinkPathways.load"]], "load_data() (pypath.core.annot.signalinkpathways method)": [[78, "pypath.core.annot.SignalinkPathways.load_data"]], "load_proteins() (pypath.core.annot.signalinkpathways method)": [[78, "pypath.core.annot.SignalinkPathways.load_proteins"]], "make_df() (pypath.core.annot.signalinkpathways method)": [[78, "pypath.core.annot.SignalinkPathways.make_df"]], "numof_entities() (pypath.core.annot.signalinkpathways method)": [[78, "pypath.core.annot.SignalinkPathways.numof_entities"]], "numof_records() (pypath.core.annot.signalinkpathways method)": [[78, "pypath.core.annot.SignalinkPathways.numof_records"]], "numof_references() (pypath.core.annot.signalinkpathways method)": [[78, "pypath.core.annot.SignalinkPathways.numof_references"]], "process() (pypath.core.annot.signalinkpathways method)": [[78, "pypath.core.annot.SignalinkPathways.process"]], "reload() (pypath.core.annot.signalinkpathways method)": [[78, "pypath.core.annot.SignalinkPathways.reload"]], "select() (pypath.core.annot.signalinkpathways method)": [[78, "pypath.core.annot.SignalinkPathways.select"]], "set_method() (pypath.core.annot.signalinkpathways method)": [[78, "pypath.core.annot.SignalinkPathways.set_method"]], "set_reference_set() (pypath.core.annot.signalinkpathways method)": [[78, "pypath.core.annot.SignalinkPathways.set_reference_set"]], "show() (pypath.core.annot.signalinkpathways method)": [[78, "pypath.core.annot.SignalinkPathways.show"]], "subset_intersection() (pypath.core.annot.signalinkpathways method)": [[78, "pypath.core.annot.SignalinkPathways.subset_intersection"]], "to_array() (pypath.core.annot.signalinkpathways method)": [[78, "pypath.core.annot.SignalinkPathways.to_array"]], "to_bool_array() (pypath.core.annot.signalinkpathways method)": [[78, "pypath.core.annot.SignalinkPathways.to_bool_array"]], "to_set() (pypath.core.annot.signalinkpathways method)": [[78, "pypath.core.annot.SignalinkPathways.to_set"]], "signorpathways (class in pypath.core.annot)": [[79, "pypath.core.annot.SignorPathways"]], "__init__() (pypath.core.annot.signorpathways method)": [[79, "pypath.core.annot.SignorPathways.__init__"]], "add_complexes_by_inference() (pypath.core.annot.signorpathways method)": [[79, "pypath.core.annot.SignorPathways.add_complexes_by_inference"]], "all_complexes() (pypath.core.annot.signorpathways method)": [[79, "pypath.core.annot.SignorPathways.all_complexes"]], "all_entities() (pypath.core.annot.signorpathways method)": [[79, "pypath.core.annot.SignorPathways.all_entities"]], "all_mirnas() (pypath.core.annot.signorpathways method)": [[79, "pypath.core.annot.SignorPathways.all_mirnas"]], "all_proteins() (pypath.core.annot.signorpathways method)": [[79, "pypath.core.annot.SignorPathways.all_proteins"]], "all_refs() (pypath.core.annot.signorpathways method)": [[79, "pypath.core.annot.SignorPathways.all_refs"]], "annotate_complex() (pypath.core.annot.signorpathways method)": [[79, "pypath.core.annot.SignorPathways.annotate_complex"]], "browse() (pypath.core.annot.signorpathways method)": [[79, "pypath.core.annot.SignorPathways.browse"]], "complex_inference() (pypath.core.annot.signorpathways method)": [[79, "pypath.core.annot.SignorPathways.complex_inference"]], "coverage() (pypath.core.annot.signorpathways method)": [[79, "pypath.core.annot.SignorPathways.coverage"]], "curation_effort() (pypath.core.annot.signorpathways method)": [[79, "pypath.core.annot.SignorPathways.curation_effort"]], "get_names() (pypath.core.annot.signorpathways method)": [[79, "pypath.core.annot.SignorPathways.get_names"]], "get_reference_set() (pypath.core.annot.signorpathways static method)": [[79, "pypath.core.annot.SignorPathways.get_reference_set"]], "get_subset() (pypath.core.annot.signorpathways method)": [[79, "pypath.core.annot.SignorPathways.get_subset"]], "get_subset_bool_array() (pypath.core.annot.signorpathways method)": [[79, "pypath.core.annot.SignorPathways.get_subset_bool_array"]], "get_values() (pypath.core.annot.signorpathways method)": [[79, "pypath.core.annot.SignorPathways.get_values"]], "labels() (pypath.core.annot.signorpathways method)": [[79, "pypath.core.annot.SignorPathways.labels"]], "load() (pypath.core.annot.signorpathways method)": [[79, "pypath.core.annot.SignorPathways.load"]], "load_data() (pypath.core.annot.signorpathways method)": [[79, "pypath.core.annot.SignorPathways.load_data"]], "load_proteins() (pypath.core.annot.signorpathways method)": [[79, "pypath.core.annot.SignorPathways.load_proteins"]], "make_df() (pypath.core.annot.signorpathways method)": [[79, "pypath.core.annot.SignorPathways.make_df"]], "numof_entities() (pypath.core.annot.signorpathways method)": [[79, "pypath.core.annot.SignorPathways.numof_entities"]], "numof_records() (pypath.core.annot.signorpathways method)": [[79, "pypath.core.annot.SignorPathways.numof_records"]], "numof_references() (pypath.core.annot.signorpathways method)": [[79, "pypath.core.annot.SignorPathways.numof_references"]], "process() (pypath.core.annot.signorpathways method)": [[79, "pypath.core.annot.SignorPathways.process"]], "reload() (pypath.core.annot.signorpathways method)": [[79, "pypath.core.annot.SignorPathways.reload"]], "select() (pypath.core.annot.signorpathways method)": [[79, "pypath.core.annot.SignorPathways.select"]], "set_method() (pypath.core.annot.signorpathways method)": [[79, "pypath.core.annot.SignorPathways.set_method"]], "set_reference_set() (pypath.core.annot.signorpathways method)": [[79, "pypath.core.annot.SignorPathways.set_reference_set"]], "show() (pypath.core.annot.signorpathways method)": [[79, "pypath.core.annot.SignorPathways.show"]], "subset_intersection() (pypath.core.annot.signorpathways method)": [[79, "pypath.core.annot.SignorPathways.subset_intersection"]], "to_array() (pypath.core.annot.signorpathways method)": [[79, "pypath.core.annot.SignorPathways.to_array"]], "to_bool_array() (pypath.core.annot.signorpathways method)": [[79, "pypath.core.annot.SignorPathways.to_bool_array"]], "to_set() (pypath.core.annot.signorpathways method)": [[79, "pypath.core.annot.SignorPathways.to_set"]], "surfaceome (class in pypath.core.annot)": [[80, "pypath.core.annot.Surfaceome"]], "__init__() (pypath.core.annot.surfaceome method)": [[80, "pypath.core.annot.Surfaceome.__init__"]], "add_complexes_by_inference() (pypath.core.annot.surfaceome method)": [[80, "pypath.core.annot.Surfaceome.add_complexes_by_inference"]], "all_complexes() (pypath.core.annot.surfaceome method)": [[80, "pypath.core.annot.Surfaceome.all_complexes"]], "all_entities() (pypath.core.annot.surfaceome method)": [[80, "pypath.core.annot.Surfaceome.all_entities"]], "all_mirnas() (pypath.core.annot.surfaceome method)": [[80, "pypath.core.annot.Surfaceome.all_mirnas"]], "all_proteins() (pypath.core.annot.surfaceome method)": [[80, "pypath.core.annot.Surfaceome.all_proteins"]], "all_refs() (pypath.core.annot.surfaceome method)": [[80, "pypath.core.annot.Surfaceome.all_refs"]], "annotate_complex() (pypath.core.annot.surfaceome method)": [[80, "pypath.core.annot.Surfaceome.annotate_complex"]], "browse() (pypath.core.annot.surfaceome method)": [[80, "pypath.core.annot.Surfaceome.browse"]], "complex_inference() (pypath.core.annot.surfaceome method)": [[80, "pypath.core.annot.Surfaceome.complex_inference"]], "coverage() (pypath.core.annot.surfaceome method)": [[80, "pypath.core.annot.Surfaceome.coverage"]], "curation_effort() (pypath.core.annot.surfaceome method)": [[80, "pypath.core.annot.Surfaceome.curation_effort"]], "get_names() (pypath.core.annot.surfaceome method)": [[80, "pypath.core.annot.Surfaceome.get_names"]], "get_reference_set() (pypath.core.annot.surfaceome static method)": [[80, "pypath.core.annot.Surfaceome.get_reference_set"]], "get_subset() (pypath.core.annot.surfaceome method)": [[80, "pypath.core.annot.Surfaceome.get_subset"]], "get_subset_bool_array() (pypath.core.annot.surfaceome method)": [[80, "pypath.core.annot.Surfaceome.get_subset_bool_array"]], "get_values() (pypath.core.annot.surfaceome method)": [[80, "pypath.core.annot.Surfaceome.get_values"]], "labels() (pypath.core.annot.surfaceome method)": [[80, "pypath.core.annot.Surfaceome.labels"]], "load() (pypath.core.annot.surfaceome method)": [[80, "pypath.core.annot.Surfaceome.load"]], "load_data() (pypath.core.annot.surfaceome method)": [[80, "pypath.core.annot.Surfaceome.load_data"]], "load_proteins() (pypath.core.annot.surfaceome method)": [[80, "pypath.core.annot.Surfaceome.load_proteins"]], "make_df() (pypath.core.annot.surfaceome method)": [[80, "pypath.core.annot.Surfaceome.make_df"]], "numof_entities() (pypath.core.annot.surfaceome method)": [[80, "pypath.core.annot.Surfaceome.numof_entities"]], "numof_records() (pypath.core.annot.surfaceome method)": [[80, "pypath.core.annot.Surfaceome.numof_records"]], "numof_references() (pypath.core.annot.surfaceome method)": [[80, "pypath.core.annot.Surfaceome.numof_references"]], "process() (pypath.core.annot.surfaceome method)": [[80, "pypath.core.annot.Surfaceome.process"]], "reload() (pypath.core.annot.surfaceome method)": [[80, "pypath.core.annot.Surfaceome.reload"]], "select() (pypath.core.annot.surfaceome method)": [[80, "pypath.core.annot.Surfaceome.select"]], "set_method() (pypath.core.annot.surfaceome method)": [[80, "pypath.core.annot.Surfaceome.set_method"]], "set_reference_set() (pypath.core.annot.surfaceome method)": [[80, "pypath.core.annot.Surfaceome.set_reference_set"]], "show() (pypath.core.annot.surfaceome method)": [[80, "pypath.core.annot.Surfaceome.show"]], "subset_intersection() (pypath.core.annot.surfaceome method)": [[80, "pypath.core.annot.Surfaceome.subset_intersection"]], "to_array() (pypath.core.annot.surfaceome method)": [[80, "pypath.core.annot.Surfaceome.to_array"]], "to_bool_array() (pypath.core.annot.surfaceome method)": [[80, "pypath.core.annot.Surfaceome.to_bool_array"]], "to_set() (pypath.core.annot.surfaceome method)": [[80, "pypath.core.annot.Surfaceome.to_set"]], "talklr (class in pypath.core.annot)": [[81, "pypath.core.annot.Talklr"]], "__init__() (pypath.core.annot.talklr method)": [[81, "pypath.core.annot.Talklr.__init__"]], "add_complexes_by_inference() (pypath.core.annot.talklr method)": [[81, "pypath.core.annot.Talklr.add_complexes_by_inference"]], "all_complexes() (pypath.core.annot.talklr method)": [[81, "pypath.core.annot.Talklr.all_complexes"]], "all_entities() (pypath.core.annot.talklr method)": [[81, "pypath.core.annot.Talklr.all_entities"]], "all_mirnas() (pypath.core.annot.talklr method)": [[81, "pypath.core.annot.Talklr.all_mirnas"]], "all_proteins() (pypath.core.annot.talklr method)": [[81, "pypath.core.annot.Talklr.all_proteins"]], "all_refs() (pypath.core.annot.talklr method)": [[81, "pypath.core.annot.Talklr.all_refs"]], "annotate_complex() (pypath.core.annot.talklr method)": [[81, "pypath.core.annot.Talklr.annotate_complex"]], "browse() (pypath.core.annot.talklr method)": [[81, "pypath.core.annot.Talklr.browse"]], "complex_inference() (pypath.core.annot.talklr method)": [[81, "pypath.core.annot.Talklr.complex_inference"]], "coverage() (pypath.core.annot.talklr method)": [[81, "pypath.core.annot.Talklr.coverage"]], "curation_effort() (pypath.core.annot.talklr method)": [[81, "pypath.core.annot.Talklr.curation_effort"]], "get_names() (pypath.core.annot.talklr method)": [[81, "pypath.core.annot.Talklr.get_names"]], "get_reference_set() (pypath.core.annot.talklr static method)": [[81, "pypath.core.annot.Talklr.get_reference_set"]], "get_subset() (pypath.core.annot.talklr method)": [[81, "pypath.core.annot.Talklr.get_subset"]], "get_subset_bool_array() (pypath.core.annot.talklr method)": [[81, "pypath.core.annot.Talklr.get_subset_bool_array"]], "get_values() (pypath.core.annot.talklr method)": [[81, "pypath.core.annot.Talklr.get_values"]], "labels() (pypath.core.annot.talklr method)": [[81, "pypath.core.annot.Talklr.labels"]], "load() (pypath.core.annot.talklr method)": [[81, "pypath.core.annot.Talklr.load"]], "load_data() (pypath.core.annot.talklr method)": [[81, "pypath.core.annot.Talklr.load_data"]], "load_proteins() (pypath.core.annot.talklr method)": [[81, "pypath.core.annot.Talklr.load_proteins"]], "make_df() (pypath.core.annot.talklr method)": [[81, "pypath.core.annot.Talklr.make_df"]], "numof_entities() (pypath.core.annot.talklr method)": [[81, "pypath.core.annot.Talklr.numof_entities"]], "numof_records() (pypath.core.annot.talklr method)": [[81, "pypath.core.annot.Talklr.numof_records"]], "numof_references() (pypath.core.annot.talklr method)": [[81, "pypath.core.annot.Talklr.numof_references"]], "process() (pypath.core.annot.talklr method)": [[81, "pypath.core.annot.Talklr.process"]], "reload() (pypath.core.annot.talklr method)": [[81, "pypath.core.annot.Talklr.reload"]], "select() (pypath.core.annot.talklr method)": [[81, "pypath.core.annot.Talklr.select"]], "set_method() (pypath.core.annot.talklr method)": [[81, "pypath.core.annot.Talklr.set_method"]], "set_reference_set() (pypath.core.annot.talklr method)": [[81, "pypath.core.annot.Talklr.set_reference_set"]], "show() (pypath.core.annot.talklr method)": [[81, "pypath.core.annot.Talklr.show"]], "subset_intersection() (pypath.core.annot.talklr method)": [[81, "pypath.core.annot.Talklr.subset_intersection"]], "to_array() (pypath.core.annot.talklr method)": [[81, "pypath.core.annot.Talklr.to_array"]], "to_bool_array() (pypath.core.annot.talklr method)": [[81, "pypath.core.annot.Talklr.to_bool_array"]], "to_set() (pypath.core.annot.talklr method)": [[81, "pypath.core.annot.Talklr.to_set"]], "tcdb (class in pypath.core.annot)": [[82, "pypath.core.annot.Tcdb"]], "__init__() (pypath.core.annot.tcdb method)": [[82, "pypath.core.annot.Tcdb.__init__"]], "add_complexes_by_inference() (pypath.core.annot.tcdb method)": [[82, "pypath.core.annot.Tcdb.add_complexes_by_inference"]], "all_complexes() (pypath.core.annot.tcdb method)": [[82, "pypath.core.annot.Tcdb.all_complexes"]], "all_entities() (pypath.core.annot.tcdb method)": [[82, "pypath.core.annot.Tcdb.all_entities"]], "all_mirnas() (pypath.core.annot.tcdb method)": [[82, "pypath.core.annot.Tcdb.all_mirnas"]], "all_proteins() (pypath.core.annot.tcdb method)": [[82, "pypath.core.annot.Tcdb.all_proteins"]], "all_refs() (pypath.core.annot.tcdb method)": [[82, "pypath.core.annot.Tcdb.all_refs"]], "annotate_complex() (pypath.core.annot.tcdb method)": [[82, "pypath.core.annot.Tcdb.annotate_complex"]], "browse() (pypath.core.annot.tcdb method)": [[82, "pypath.core.annot.Tcdb.browse"]], "complex_inference() (pypath.core.annot.tcdb method)": [[82, "pypath.core.annot.Tcdb.complex_inference"]], "coverage() (pypath.core.annot.tcdb method)": [[82, "pypath.core.annot.Tcdb.coverage"]], "curation_effort() (pypath.core.annot.tcdb method)": [[82, "pypath.core.annot.Tcdb.curation_effort"]], "get_names() (pypath.core.annot.tcdb method)": [[82, "pypath.core.annot.Tcdb.get_names"]], "get_reference_set() (pypath.core.annot.tcdb static method)": [[82, "pypath.core.annot.Tcdb.get_reference_set"]], "get_subset() (pypath.core.annot.tcdb method)": [[82, "pypath.core.annot.Tcdb.get_subset"]], "get_subset_bool_array() (pypath.core.annot.tcdb method)": [[82, "pypath.core.annot.Tcdb.get_subset_bool_array"]], "get_values() (pypath.core.annot.tcdb method)": [[82, "pypath.core.annot.Tcdb.get_values"]], "labels() (pypath.core.annot.tcdb method)": [[82, "pypath.core.annot.Tcdb.labels"]], "load() (pypath.core.annot.tcdb method)": [[82, "pypath.core.annot.Tcdb.load"]], "load_data() (pypath.core.annot.tcdb method)": [[82, "pypath.core.annot.Tcdb.load_data"]], "load_proteins() (pypath.core.annot.tcdb method)": [[82, "pypath.core.annot.Tcdb.load_proteins"]], "make_df() (pypath.core.annot.tcdb method)": [[82, "pypath.core.annot.Tcdb.make_df"]], "numof_entities() (pypath.core.annot.tcdb method)": [[82, "pypath.core.annot.Tcdb.numof_entities"]], "numof_records() (pypath.core.annot.tcdb method)": [[82, "pypath.core.annot.Tcdb.numof_records"]], "numof_references() (pypath.core.annot.tcdb method)": [[82, "pypath.core.annot.Tcdb.numof_references"]], "process() (pypath.core.annot.tcdb method)": [[82, "pypath.core.annot.Tcdb.process"]], "reload() (pypath.core.annot.tcdb method)": [[82, "pypath.core.annot.Tcdb.reload"]], "select() (pypath.core.annot.tcdb method)": [[82, "pypath.core.annot.Tcdb.select"]], "set_method() (pypath.core.annot.tcdb method)": [[82, "pypath.core.annot.Tcdb.set_method"]], "set_reference_set() (pypath.core.annot.tcdb method)": [[82, "pypath.core.annot.Tcdb.set_reference_set"]], "show() (pypath.core.annot.tcdb method)": [[82, "pypath.core.annot.Tcdb.show"]], "subset_intersection() (pypath.core.annot.tcdb method)": [[82, "pypath.core.annot.Tcdb.subset_intersection"]], "to_array() (pypath.core.annot.tcdb method)": [[82, "pypath.core.annot.Tcdb.to_array"]], "to_bool_array() (pypath.core.annot.tcdb method)": [[82, "pypath.core.annot.Tcdb.to_bool_array"]], "to_set() (pypath.core.annot.tcdb method)": [[82, "pypath.core.annot.Tcdb.to_set"]], "tfcensus (class in pypath.core.annot)": [[83, "pypath.core.annot.Tfcensus"]], "__init__() (pypath.core.annot.tfcensus method)": [[83, "pypath.core.annot.Tfcensus.__init__"]], "add_complexes_by_inference() (pypath.core.annot.tfcensus method)": [[83, "pypath.core.annot.Tfcensus.add_complexes_by_inference"]], "all_complexes() (pypath.core.annot.tfcensus method)": [[83, "pypath.core.annot.Tfcensus.all_complexes"]], "all_entities() (pypath.core.annot.tfcensus method)": [[83, "pypath.core.annot.Tfcensus.all_entities"]], "all_mirnas() (pypath.core.annot.tfcensus method)": [[83, "pypath.core.annot.Tfcensus.all_mirnas"]], "all_proteins() (pypath.core.annot.tfcensus method)": [[83, "pypath.core.annot.Tfcensus.all_proteins"]], "all_refs() (pypath.core.annot.tfcensus method)": [[83, "pypath.core.annot.Tfcensus.all_refs"]], "annotate_complex() (pypath.core.annot.tfcensus method)": [[83, "pypath.core.annot.Tfcensus.annotate_complex"]], "browse() (pypath.core.annot.tfcensus method)": [[83, "pypath.core.annot.Tfcensus.browse"]], "complex_inference() (pypath.core.annot.tfcensus method)": [[83, "pypath.core.annot.Tfcensus.complex_inference"]], "coverage() (pypath.core.annot.tfcensus method)": [[83, "pypath.core.annot.Tfcensus.coverage"]], "curation_effort() (pypath.core.annot.tfcensus method)": [[83, "pypath.core.annot.Tfcensus.curation_effort"]], "get_names() (pypath.core.annot.tfcensus method)": [[83, "pypath.core.annot.Tfcensus.get_names"]], "get_reference_set() (pypath.core.annot.tfcensus static method)": [[83, "pypath.core.annot.Tfcensus.get_reference_set"]], "get_subset() (pypath.core.annot.tfcensus method)": [[83, "pypath.core.annot.Tfcensus.get_subset"]], "get_subset_bool_array() (pypath.core.annot.tfcensus method)": [[83, "pypath.core.annot.Tfcensus.get_subset_bool_array"]], "get_values() (pypath.core.annot.tfcensus method)": [[83, "pypath.core.annot.Tfcensus.get_values"]], "labels() (pypath.core.annot.tfcensus method)": [[83, "pypath.core.annot.Tfcensus.labels"]], "load() (pypath.core.annot.tfcensus method)": [[83, "pypath.core.annot.Tfcensus.load"]], "load_data() (pypath.core.annot.tfcensus method)": [[83, "pypath.core.annot.Tfcensus.load_data"]], "load_proteins() (pypath.core.annot.tfcensus method)": [[83, "pypath.core.annot.Tfcensus.load_proteins"]], "make_df() (pypath.core.annot.tfcensus method)": [[83, "pypath.core.annot.Tfcensus.make_df"]], "numof_entities() (pypath.core.annot.tfcensus method)": [[83, "pypath.core.annot.Tfcensus.numof_entities"]], "numof_records() (pypath.core.annot.tfcensus method)": [[83, "pypath.core.annot.Tfcensus.numof_records"]], "numof_references() (pypath.core.annot.tfcensus method)": [[83, "pypath.core.annot.Tfcensus.numof_references"]], "process() (pypath.core.annot.tfcensus method)": [[83, "pypath.core.annot.Tfcensus.process"]], "reload() (pypath.core.annot.tfcensus method)": [[83, "pypath.core.annot.Tfcensus.reload"]], "select() (pypath.core.annot.tfcensus method)": [[83, "pypath.core.annot.Tfcensus.select"]], "set_method() (pypath.core.annot.tfcensus method)": [[83, "pypath.core.annot.Tfcensus.set_method"]], "set_reference_set() (pypath.core.annot.tfcensus method)": [[83, "pypath.core.annot.Tfcensus.set_reference_set"]], "show() (pypath.core.annot.tfcensus method)": [[83, "pypath.core.annot.Tfcensus.show"]], "subset_intersection() (pypath.core.annot.tfcensus method)": [[83, "pypath.core.annot.Tfcensus.subset_intersection"]], "to_array() (pypath.core.annot.tfcensus method)": [[83, "pypath.core.annot.Tfcensus.to_array"]], "to_bool_array() (pypath.core.annot.tfcensus method)": [[83, "pypath.core.annot.Tfcensus.to_bool_array"]], "to_set() (pypath.core.annot.tfcensus method)": [[83, "pypath.core.annot.Tfcensus.to_set"]], "topdb (class in pypath.core.annot)": [[84, "pypath.core.annot.Topdb"]], "__init__() (pypath.core.annot.topdb method)": [[84, "pypath.core.annot.Topdb.__init__"]], "add_complexes_by_inference() (pypath.core.annot.topdb method)": [[84, "pypath.core.annot.Topdb.add_complexes_by_inference"]], "all_complexes() (pypath.core.annot.topdb method)": [[84, "pypath.core.annot.Topdb.all_complexes"]], "all_entities() (pypath.core.annot.topdb method)": [[84, "pypath.core.annot.Topdb.all_entities"]], "all_mirnas() (pypath.core.annot.topdb method)": [[84, "pypath.core.annot.Topdb.all_mirnas"]], "all_proteins() (pypath.core.annot.topdb method)": [[84, "pypath.core.annot.Topdb.all_proteins"]], "all_refs() (pypath.core.annot.topdb method)": [[84, "pypath.core.annot.Topdb.all_refs"]], "annotate_complex() (pypath.core.annot.topdb method)": [[84, "pypath.core.annot.Topdb.annotate_complex"]], "browse() (pypath.core.annot.topdb method)": [[84, "pypath.core.annot.Topdb.browse"]], "complex_inference() (pypath.core.annot.topdb method)": [[84, "pypath.core.annot.Topdb.complex_inference"]], "coverage() (pypath.core.annot.topdb method)": [[84, "pypath.core.annot.Topdb.coverage"]], "curation_effort() (pypath.core.annot.topdb method)": [[84, "pypath.core.annot.Topdb.curation_effort"]], "get_names() (pypath.core.annot.topdb method)": [[84, "pypath.core.annot.Topdb.get_names"]], "get_reference_set() (pypath.core.annot.topdb static method)": [[84, "pypath.core.annot.Topdb.get_reference_set"]], "get_subset() (pypath.core.annot.topdb method)": [[84, "pypath.core.annot.Topdb.get_subset"]], "get_subset_bool_array() (pypath.core.annot.topdb method)": [[84, "pypath.core.annot.Topdb.get_subset_bool_array"]], "get_values() (pypath.core.annot.topdb method)": [[84, "pypath.core.annot.Topdb.get_values"]], "labels() (pypath.core.annot.topdb method)": [[84, "pypath.core.annot.Topdb.labels"]], "load() (pypath.core.annot.topdb method)": [[84, "pypath.core.annot.Topdb.load"]], "load_data() (pypath.core.annot.topdb method)": [[84, "pypath.core.annot.Topdb.load_data"]], "load_proteins() (pypath.core.annot.topdb method)": [[84, "pypath.core.annot.Topdb.load_proteins"]], "make_df() (pypath.core.annot.topdb method)": [[84, "pypath.core.annot.Topdb.make_df"]], "numof_entities() (pypath.core.annot.topdb method)": [[84, "pypath.core.annot.Topdb.numof_entities"]], "numof_records() (pypath.core.annot.topdb method)": [[84, "pypath.core.annot.Topdb.numof_records"]], "numof_references() (pypath.core.annot.topdb method)": [[84, "pypath.core.annot.Topdb.numof_references"]], "process() (pypath.core.annot.topdb method)": [[84, "pypath.core.annot.Topdb.process"]], "reload() (pypath.core.annot.topdb method)": [[84, "pypath.core.annot.Topdb.reload"]], "select() (pypath.core.annot.topdb method)": [[84, "pypath.core.annot.Topdb.select"]], "set_method() (pypath.core.annot.topdb method)": [[84, "pypath.core.annot.Topdb.set_method"]], "set_reference_set() (pypath.core.annot.topdb method)": [[84, "pypath.core.annot.Topdb.set_reference_set"]], "show() (pypath.core.annot.topdb method)": [[84, "pypath.core.annot.Topdb.show"]], "subset_intersection() (pypath.core.annot.topdb method)": [[84, "pypath.core.annot.Topdb.subset_intersection"]], "to_array() (pypath.core.annot.topdb method)": [[84, "pypath.core.annot.Topdb.to_array"]], "to_bool_array() (pypath.core.annot.topdb method)": [[84, "pypath.core.annot.Topdb.to_bool_array"]], "to_set() (pypath.core.annot.topdb method)": [[84, "pypath.core.annot.Topdb.to_set"]], "uniprotfamilies (class in pypath.core.annot)": [[85, "pypath.core.annot.UniprotFamilies"]], "__init__() (pypath.core.annot.uniprotfamilies method)": [[85, "pypath.core.annot.UniprotFamilies.__init__"]], "add_complexes_by_inference() (pypath.core.annot.uniprotfamilies method)": [[85, "pypath.core.annot.UniprotFamilies.add_complexes_by_inference"]], "all_complexes() (pypath.core.annot.uniprotfamilies method)": [[85, "pypath.core.annot.UniprotFamilies.all_complexes"]], "all_entities() (pypath.core.annot.uniprotfamilies method)": [[85, "pypath.core.annot.UniprotFamilies.all_entities"]], "all_mirnas() (pypath.core.annot.uniprotfamilies method)": [[85, "pypath.core.annot.UniprotFamilies.all_mirnas"]], "all_proteins() (pypath.core.annot.uniprotfamilies method)": [[85, "pypath.core.annot.UniprotFamilies.all_proteins"]], "all_refs() (pypath.core.annot.uniprotfamilies method)": [[85, "pypath.core.annot.UniprotFamilies.all_refs"]], "annotate_complex() (pypath.core.annot.uniprotfamilies method)": [[85, "pypath.core.annot.UniprotFamilies.annotate_complex"]], "browse() (pypath.core.annot.uniprotfamilies method)": [[85, "pypath.core.annot.UniprotFamilies.browse"]], "complex_inference() (pypath.core.annot.uniprotfamilies method)": [[85, "pypath.core.annot.UniprotFamilies.complex_inference"]], "coverage() (pypath.core.annot.uniprotfamilies method)": [[85, "pypath.core.annot.UniprotFamilies.coverage"]], "curation_effort() (pypath.core.annot.uniprotfamilies method)": [[85, "pypath.core.annot.UniprotFamilies.curation_effort"]], "get_names() (pypath.core.annot.uniprotfamilies method)": [[85, "pypath.core.annot.UniprotFamilies.get_names"]], "get_reference_set() (pypath.core.annot.uniprotfamilies static method)": [[85, "pypath.core.annot.UniprotFamilies.get_reference_set"]], "get_subset() (pypath.core.annot.uniprotfamilies method)": [[85, "pypath.core.annot.UniprotFamilies.get_subset"]], "get_subset_bool_array() (pypath.core.annot.uniprotfamilies method)": [[85, "pypath.core.annot.UniprotFamilies.get_subset_bool_array"]], "get_values() (pypath.core.annot.uniprotfamilies method)": [[85, "pypath.core.annot.UniprotFamilies.get_values"]], "labels() (pypath.core.annot.uniprotfamilies method)": [[85, "pypath.core.annot.UniprotFamilies.labels"]], "load() (pypath.core.annot.uniprotfamilies method)": [[85, "pypath.core.annot.UniprotFamilies.load"]], "load_data() (pypath.core.annot.uniprotfamilies method)": [[85, "pypath.core.annot.UniprotFamilies.load_data"]], "load_proteins() (pypath.core.annot.uniprotfamilies method)": [[85, "pypath.core.annot.UniprotFamilies.load_proteins"]], "make_df() (pypath.core.annot.uniprotfamilies method)": [[85, "pypath.core.annot.UniprotFamilies.make_df"]], "numof_entities() (pypath.core.annot.uniprotfamilies method)": [[85, "pypath.core.annot.UniprotFamilies.numof_entities"]], "numof_records() (pypath.core.annot.uniprotfamilies method)": [[85, "pypath.core.annot.UniprotFamilies.numof_records"]], "numof_references() (pypath.core.annot.uniprotfamilies method)": [[85, "pypath.core.annot.UniprotFamilies.numof_references"]], "process() (pypath.core.annot.uniprotfamilies method)": [[85, "pypath.core.annot.UniprotFamilies.process"]], "reload() (pypath.core.annot.uniprotfamilies method)": [[85, "pypath.core.annot.UniprotFamilies.reload"]], "select() (pypath.core.annot.uniprotfamilies method)": [[85, "pypath.core.annot.UniprotFamilies.select"]], "set_method() (pypath.core.annot.uniprotfamilies method)": [[85, "pypath.core.annot.UniprotFamilies.set_method"]], "set_reference_set() (pypath.core.annot.uniprotfamilies method)": [[85, "pypath.core.annot.UniprotFamilies.set_reference_set"]], "show() (pypath.core.annot.uniprotfamilies method)": [[85, "pypath.core.annot.UniprotFamilies.show"]], "subset_intersection() (pypath.core.annot.uniprotfamilies method)": [[85, "pypath.core.annot.UniprotFamilies.subset_intersection"]], "to_array() (pypath.core.annot.uniprotfamilies method)": [[85, "pypath.core.annot.UniprotFamilies.to_array"]], "to_bool_array() (pypath.core.annot.uniprotfamilies method)": [[85, "pypath.core.annot.UniprotFamilies.to_bool_array"]], "to_set() (pypath.core.annot.uniprotfamilies method)": [[85, "pypath.core.annot.UniprotFamilies.to_set"]], "uniprotkeywords (class in pypath.core.annot)": [[86, "pypath.core.annot.UniprotKeywords"]], "__init__() (pypath.core.annot.uniprotkeywords method)": [[86, "pypath.core.annot.UniprotKeywords.__init__"]], "add_complexes_by_inference() (pypath.core.annot.uniprotkeywords method)": [[86, "pypath.core.annot.UniprotKeywords.add_complexes_by_inference"]], "all_complexes() (pypath.core.annot.uniprotkeywords method)": [[86, "pypath.core.annot.UniprotKeywords.all_complexes"]], "all_entities() (pypath.core.annot.uniprotkeywords method)": [[86, "pypath.core.annot.UniprotKeywords.all_entities"]], "all_mirnas() (pypath.core.annot.uniprotkeywords method)": [[86, "pypath.core.annot.UniprotKeywords.all_mirnas"]], "all_proteins() (pypath.core.annot.uniprotkeywords method)": [[86, "pypath.core.annot.UniprotKeywords.all_proteins"]], "all_refs() (pypath.core.annot.uniprotkeywords method)": [[86, "pypath.core.annot.UniprotKeywords.all_refs"]], "annotate_complex() (pypath.core.annot.uniprotkeywords method)": [[86, "pypath.core.annot.UniprotKeywords.annotate_complex"]], "browse() (pypath.core.annot.uniprotkeywords method)": [[86, "pypath.core.annot.UniprotKeywords.browse"]], "complex_inference() (pypath.core.annot.uniprotkeywords method)": [[86, "pypath.core.annot.UniprotKeywords.complex_inference"]], "coverage() (pypath.core.annot.uniprotkeywords method)": [[86, "pypath.core.annot.UniprotKeywords.coverage"]], "curation_effort() (pypath.core.annot.uniprotkeywords method)": [[86, "pypath.core.annot.UniprotKeywords.curation_effort"]], "get_names() (pypath.core.annot.uniprotkeywords method)": [[86, "pypath.core.annot.UniprotKeywords.get_names"]], "get_reference_set() (pypath.core.annot.uniprotkeywords static method)": [[86, "pypath.core.annot.UniprotKeywords.get_reference_set"]], "get_subset() (pypath.core.annot.uniprotkeywords method)": [[86, "pypath.core.annot.UniprotKeywords.get_subset"]], "get_subset_bool_array() (pypath.core.annot.uniprotkeywords method)": [[86, "pypath.core.annot.UniprotKeywords.get_subset_bool_array"]], "get_values() (pypath.core.annot.uniprotkeywords method)": [[86, "pypath.core.annot.UniprotKeywords.get_values"]], "labels() (pypath.core.annot.uniprotkeywords method)": [[86, "pypath.core.annot.UniprotKeywords.labels"]], "load() (pypath.core.annot.uniprotkeywords method)": [[86, "pypath.core.annot.UniprotKeywords.load"]], "load_data() (pypath.core.annot.uniprotkeywords method)": [[86, "pypath.core.annot.UniprotKeywords.load_data"]], "load_proteins() (pypath.core.annot.uniprotkeywords method)": [[86, "pypath.core.annot.UniprotKeywords.load_proteins"]], "make_df() (pypath.core.annot.uniprotkeywords method)": [[86, "pypath.core.annot.UniprotKeywords.make_df"]], "numof_entities() (pypath.core.annot.uniprotkeywords method)": [[86, "pypath.core.annot.UniprotKeywords.numof_entities"]], "numof_records() (pypath.core.annot.uniprotkeywords method)": [[86, "pypath.core.annot.UniprotKeywords.numof_records"]], "numof_references() (pypath.core.annot.uniprotkeywords method)": [[86, "pypath.core.annot.UniprotKeywords.numof_references"]], "process() (pypath.core.annot.uniprotkeywords method)": [[86, "pypath.core.annot.UniprotKeywords.process"]], "reload() (pypath.core.annot.uniprotkeywords method)": [[86, "pypath.core.annot.UniprotKeywords.reload"]], "select() (pypath.core.annot.uniprotkeywords method)": [[86, "pypath.core.annot.UniprotKeywords.select"]], "set_method() (pypath.core.annot.uniprotkeywords method)": [[86, "pypath.core.annot.UniprotKeywords.set_method"]], "set_reference_set() (pypath.core.annot.uniprotkeywords method)": [[86, "pypath.core.annot.UniprotKeywords.set_reference_set"]], "show() (pypath.core.annot.uniprotkeywords method)": [[86, "pypath.core.annot.UniprotKeywords.show"]], "subset_intersection() (pypath.core.annot.uniprotkeywords method)": [[86, "pypath.core.annot.UniprotKeywords.subset_intersection"]], "to_array() (pypath.core.annot.uniprotkeywords method)": [[86, "pypath.core.annot.UniprotKeywords.to_array"]], "to_bool_array() (pypath.core.annot.uniprotkeywords method)": [[86, "pypath.core.annot.UniprotKeywords.to_bool_array"]], "to_set() (pypath.core.annot.uniprotkeywords method)": [[86, "pypath.core.annot.UniprotKeywords.to_set"]], "uniprotlocations (class in pypath.core.annot)": [[87, "pypath.core.annot.UniprotLocations"]], "__init__() (pypath.core.annot.uniprotlocations method)": [[87, "pypath.core.annot.UniprotLocations.__init__"]], "add_complexes_by_inference() (pypath.core.annot.uniprotlocations method)": [[87, "pypath.core.annot.UniprotLocations.add_complexes_by_inference"]], "all_complexes() (pypath.core.annot.uniprotlocations method)": [[87, "pypath.core.annot.UniprotLocations.all_complexes"]], "all_entities() (pypath.core.annot.uniprotlocations method)": [[87, "pypath.core.annot.UniprotLocations.all_entities"]], "all_mirnas() (pypath.core.annot.uniprotlocations method)": [[87, "pypath.core.annot.UniprotLocations.all_mirnas"]], "all_proteins() (pypath.core.annot.uniprotlocations method)": [[87, "pypath.core.annot.UniprotLocations.all_proteins"]], "all_refs() (pypath.core.annot.uniprotlocations method)": [[87, "pypath.core.annot.UniprotLocations.all_refs"]], "annotate_complex() (pypath.core.annot.uniprotlocations method)": [[87, "pypath.core.annot.UniprotLocations.annotate_complex"]], "browse() (pypath.core.annot.uniprotlocations method)": [[87, "pypath.core.annot.UniprotLocations.browse"]], "complex_inference() (pypath.core.annot.uniprotlocations method)": [[87, "pypath.core.annot.UniprotLocations.complex_inference"]], "coverage() (pypath.core.annot.uniprotlocations method)": [[87, "pypath.core.annot.UniprotLocations.coverage"]], "curation_effort() (pypath.core.annot.uniprotlocations method)": [[87, "pypath.core.annot.UniprotLocations.curation_effort"]], "get_names() (pypath.core.annot.uniprotlocations method)": [[87, "pypath.core.annot.UniprotLocations.get_names"]], "get_reference_set() (pypath.core.annot.uniprotlocations static method)": [[87, "pypath.core.annot.UniprotLocations.get_reference_set"]], "get_subset() (pypath.core.annot.uniprotlocations method)": [[87, "pypath.core.annot.UniprotLocations.get_subset"]], "get_subset_bool_array() (pypath.core.annot.uniprotlocations method)": [[87, "pypath.core.annot.UniprotLocations.get_subset_bool_array"]], "get_values() (pypath.core.annot.uniprotlocations method)": [[87, "pypath.core.annot.UniprotLocations.get_values"]], "labels() (pypath.core.annot.uniprotlocations method)": [[87, "pypath.core.annot.UniprotLocations.labels"]], "load() (pypath.core.annot.uniprotlocations method)": [[87, "pypath.core.annot.UniprotLocations.load"]], "load_data() (pypath.core.annot.uniprotlocations method)": [[87, "pypath.core.annot.UniprotLocations.load_data"]], "load_proteins() (pypath.core.annot.uniprotlocations method)": [[87, "pypath.core.annot.UniprotLocations.load_proteins"]], "make_df() (pypath.core.annot.uniprotlocations method)": [[87, "pypath.core.annot.UniprotLocations.make_df"]], "numof_entities() (pypath.core.annot.uniprotlocations method)": [[87, "pypath.core.annot.UniprotLocations.numof_entities"]], "numof_records() (pypath.core.annot.uniprotlocations method)": [[87, "pypath.core.annot.UniprotLocations.numof_records"]], "numof_references() (pypath.core.annot.uniprotlocations method)": [[87, "pypath.core.annot.UniprotLocations.numof_references"]], "process() (pypath.core.annot.uniprotlocations method)": [[87, "pypath.core.annot.UniprotLocations.process"]], "reload() (pypath.core.annot.uniprotlocations method)": [[87, "pypath.core.annot.UniprotLocations.reload"]], "select() (pypath.core.annot.uniprotlocations method)": [[87, "pypath.core.annot.UniprotLocations.select"]], "set_method() (pypath.core.annot.uniprotlocations method)": [[87, "pypath.core.annot.UniprotLocations.set_method"]], "set_reference_set() (pypath.core.annot.uniprotlocations method)": [[87, "pypath.core.annot.UniprotLocations.set_reference_set"]], "show() (pypath.core.annot.uniprotlocations method)": [[87, "pypath.core.annot.UniprotLocations.show"]], "subset_intersection() (pypath.core.annot.uniprotlocations method)": [[87, "pypath.core.annot.UniprotLocations.subset_intersection"]], "to_array() (pypath.core.annot.uniprotlocations method)": [[87, "pypath.core.annot.UniprotLocations.to_array"]], "to_bool_array() (pypath.core.annot.uniprotlocations method)": [[87, "pypath.core.annot.UniprotLocations.to_bool_array"]], "to_set() (pypath.core.annot.uniprotlocations method)": [[87, "pypath.core.annot.UniprotLocations.to_set"]], "uniprottissues (class in pypath.core.annot)": [[88, "pypath.core.annot.UniprotTissues"]], "__init__() (pypath.core.annot.uniprottissues method)": [[88, "pypath.core.annot.UniprotTissues.__init__"]], "add_complexes_by_inference() (pypath.core.annot.uniprottissues method)": [[88, "pypath.core.annot.UniprotTissues.add_complexes_by_inference"]], "all_complexes() (pypath.core.annot.uniprottissues method)": [[88, "pypath.core.annot.UniprotTissues.all_complexes"]], "all_entities() (pypath.core.annot.uniprottissues method)": [[88, "pypath.core.annot.UniprotTissues.all_entities"]], "all_mirnas() (pypath.core.annot.uniprottissues method)": [[88, "pypath.core.annot.UniprotTissues.all_mirnas"]], "all_proteins() (pypath.core.annot.uniprottissues method)": [[88, "pypath.core.annot.UniprotTissues.all_proteins"]], "all_refs() (pypath.core.annot.uniprottissues method)": [[88, "pypath.core.annot.UniprotTissues.all_refs"]], "annotate_complex() (pypath.core.annot.uniprottissues method)": [[88, "pypath.core.annot.UniprotTissues.annotate_complex"]], "browse() (pypath.core.annot.uniprottissues method)": [[88, "pypath.core.annot.UniprotTissues.browse"]], "complex_inference() (pypath.core.annot.uniprottissues method)": [[88, "pypath.core.annot.UniprotTissues.complex_inference"]], "coverage() (pypath.core.annot.uniprottissues method)": [[88, "pypath.core.annot.UniprotTissues.coverage"]], "curation_effort() (pypath.core.annot.uniprottissues method)": [[88, "pypath.core.annot.UniprotTissues.curation_effort"]], "get_names() (pypath.core.annot.uniprottissues method)": [[88, "pypath.core.annot.UniprotTissues.get_names"]], "get_reference_set() (pypath.core.annot.uniprottissues static method)": [[88, "pypath.core.annot.UniprotTissues.get_reference_set"]], "get_subset() (pypath.core.annot.uniprottissues method)": [[88, "pypath.core.annot.UniprotTissues.get_subset"]], "get_subset_bool_array() (pypath.core.annot.uniprottissues method)": [[88, "pypath.core.annot.UniprotTissues.get_subset_bool_array"]], "get_values() (pypath.core.annot.uniprottissues method)": [[88, "pypath.core.annot.UniprotTissues.get_values"]], "labels() (pypath.core.annot.uniprottissues method)": [[88, "pypath.core.annot.UniprotTissues.labels"]], "load() (pypath.core.annot.uniprottissues method)": [[88, "pypath.core.annot.UniprotTissues.load"]], "load_data() (pypath.core.annot.uniprottissues method)": [[88, "pypath.core.annot.UniprotTissues.load_data"]], "load_proteins() (pypath.core.annot.uniprottissues method)": [[88, "pypath.core.annot.UniprotTissues.load_proteins"]], "make_df() (pypath.core.annot.uniprottissues method)": [[88, "pypath.core.annot.UniprotTissues.make_df"]], "numof_entities() (pypath.core.annot.uniprottissues method)": [[88, "pypath.core.annot.UniprotTissues.numof_entities"]], "numof_records() (pypath.core.annot.uniprottissues method)": [[88, "pypath.core.annot.UniprotTissues.numof_records"]], "numof_references() (pypath.core.annot.uniprottissues method)": [[88, "pypath.core.annot.UniprotTissues.numof_references"]], "process() (pypath.core.annot.uniprottissues method)": [[88, "pypath.core.annot.UniprotTissues.process"]], "reload() (pypath.core.annot.uniprottissues method)": [[88, "pypath.core.annot.UniprotTissues.reload"]], "select() (pypath.core.annot.uniprottissues method)": [[88, "pypath.core.annot.UniprotTissues.select"]], "set_method() (pypath.core.annot.uniprottissues method)": [[88, "pypath.core.annot.UniprotTissues.set_method"]], "set_reference_set() (pypath.core.annot.uniprottissues method)": [[88, "pypath.core.annot.UniprotTissues.set_reference_set"]], "show() (pypath.core.annot.uniprottissues method)": [[88, "pypath.core.annot.UniprotTissues.show"]], "subset_intersection() (pypath.core.annot.uniprottissues method)": [[88, "pypath.core.annot.UniprotTissues.subset_intersection"]], "to_array() (pypath.core.annot.uniprottissues method)": [[88, "pypath.core.annot.UniprotTissues.to_array"]], "to_bool_array() (pypath.core.annot.uniprottissues method)": [[88, "pypath.core.annot.UniprotTissues.to_bool_array"]], "to_set() (pypath.core.annot.uniprottissues method)": [[88, "pypath.core.annot.UniprotTissues.to_set"]], "uniprottopologies (class in pypath.core.annot)": [[89, "pypath.core.annot.UniprotTopologies"]], "__init__() (pypath.core.annot.uniprottopologies method)": [[89, "pypath.core.annot.UniprotTopologies.__init__"]], "add_complexes_by_inference() (pypath.core.annot.uniprottopologies method)": [[89, "pypath.core.annot.UniprotTopologies.add_complexes_by_inference"]], "all_complexes() (pypath.core.annot.uniprottopologies method)": [[89, "pypath.core.annot.UniprotTopologies.all_complexes"]], "all_entities() (pypath.core.annot.uniprottopologies method)": [[89, "pypath.core.annot.UniprotTopologies.all_entities"]], "all_mirnas() (pypath.core.annot.uniprottopologies method)": [[89, "pypath.core.annot.UniprotTopologies.all_mirnas"]], "all_proteins() (pypath.core.annot.uniprottopologies method)": [[89, "pypath.core.annot.UniprotTopologies.all_proteins"]], "all_refs() (pypath.core.annot.uniprottopologies method)": [[89, "pypath.core.annot.UniprotTopologies.all_refs"]], "annotate_complex() (pypath.core.annot.uniprottopologies method)": [[89, "pypath.core.annot.UniprotTopologies.annotate_complex"]], "browse() (pypath.core.annot.uniprottopologies method)": [[89, "pypath.core.annot.UniprotTopologies.browse"]], "complex_inference() (pypath.core.annot.uniprottopologies method)": [[89, "pypath.core.annot.UniprotTopologies.complex_inference"]], "coverage() (pypath.core.annot.uniprottopologies method)": [[89, "pypath.core.annot.UniprotTopologies.coverage"]], "curation_effort() (pypath.core.annot.uniprottopologies method)": [[89, "pypath.core.annot.UniprotTopologies.curation_effort"]], "get_names() (pypath.core.annot.uniprottopologies method)": [[89, "pypath.core.annot.UniprotTopologies.get_names"]], "get_reference_set() (pypath.core.annot.uniprottopologies static method)": [[89, "pypath.core.annot.UniprotTopologies.get_reference_set"]], "get_subset() (pypath.core.annot.uniprottopologies method)": [[89, "pypath.core.annot.UniprotTopologies.get_subset"]], "get_subset_bool_array() (pypath.core.annot.uniprottopologies method)": [[89, "pypath.core.annot.UniprotTopologies.get_subset_bool_array"]], "get_values() (pypath.core.annot.uniprottopologies method)": [[89, "pypath.core.annot.UniprotTopologies.get_values"]], "labels() (pypath.core.annot.uniprottopologies method)": [[89, "pypath.core.annot.UniprotTopologies.labels"]], "load() (pypath.core.annot.uniprottopologies method)": [[89, "pypath.core.annot.UniprotTopologies.load"]], "load_data() (pypath.core.annot.uniprottopologies method)": [[89, "pypath.core.annot.UniprotTopologies.load_data"]], "load_proteins() (pypath.core.annot.uniprottopologies method)": [[89, "pypath.core.annot.UniprotTopologies.load_proteins"]], "make_df() (pypath.core.annot.uniprottopologies method)": [[89, "pypath.core.annot.UniprotTopologies.make_df"]], "numof_entities() (pypath.core.annot.uniprottopologies method)": [[89, "pypath.core.annot.UniprotTopologies.numof_entities"]], "numof_records() (pypath.core.annot.uniprottopologies method)": [[89, "pypath.core.annot.UniprotTopologies.numof_records"]], "numof_references() (pypath.core.annot.uniprottopologies method)": [[89, "pypath.core.annot.UniprotTopologies.numof_references"]], "process() (pypath.core.annot.uniprottopologies method)": [[89, "pypath.core.annot.UniprotTopologies.process"]], "reload() (pypath.core.annot.uniprottopologies method)": [[89, "pypath.core.annot.UniprotTopologies.reload"]], "select() (pypath.core.annot.uniprottopologies method)": [[89, "pypath.core.annot.UniprotTopologies.select"]], "set_method() (pypath.core.annot.uniprottopologies method)": [[89, "pypath.core.annot.UniprotTopologies.set_method"]], "set_reference_set() (pypath.core.annot.uniprottopologies method)": [[89, "pypath.core.annot.UniprotTopologies.set_reference_set"]], "show() (pypath.core.annot.uniprottopologies method)": [[89, "pypath.core.annot.UniprotTopologies.show"]], "subset_intersection() (pypath.core.annot.uniprottopologies method)": [[89, "pypath.core.annot.UniprotTopologies.subset_intersection"]], "to_array() (pypath.core.annot.uniprottopologies method)": [[89, "pypath.core.annot.UniprotTopologies.to_array"]], "to_bool_array() (pypath.core.annot.uniprottopologies method)": [[89, "pypath.core.annot.UniprotTopologies.to_bool_array"]], "to_set() (pypath.core.annot.uniprottopologies method)": [[89, "pypath.core.annot.UniprotTopologies.to_set"]], "vesiclepedia (class in pypath.core.annot)": [[90, "pypath.core.annot.Vesiclepedia"]], "__init__() (pypath.core.annot.vesiclepedia method)": [[90, "pypath.core.annot.Vesiclepedia.__init__"]], "add_complexes_by_inference() (pypath.core.annot.vesiclepedia method)": [[90, "pypath.core.annot.Vesiclepedia.add_complexes_by_inference"]], "all_complexes() (pypath.core.annot.vesiclepedia method)": [[90, "pypath.core.annot.Vesiclepedia.all_complexes"]], "all_entities() (pypath.core.annot.vesiclepedia method)": [[90, "pypath.core.annot.Vesiclepedia.all_entities"]], "all_mirnas() (pypath.core.annot.vesiclepedia method)": [[90, "pypath.core.annot.Vesiclepedia.all_mirnas"]], "all_proteins() (pypath.core.annot.vesiclepedia method)": [[90, "pypath.core.annot.Vesiclepedia.all_proteins"]], "all_refs() (pypath.core.annot.vesiclepedia method)": [[90, "pypath.core.annot.Vesiclepedia.all_refs"]], "annotate_complex() (pypath.core.annot.vesiclepedia method)": [[90, "pypath.core.annot.Vesiclepedia.annotate_complex"]], "browse() (pypath.core.annot.vesiclepedia method)": [[90, "pypath.core.annot.Vesiclepedia.browse"]], "complex_inference() (pypath.core.annot.vesiclepedia method)": [[90, "pypath.core.annot.Vesiclepedia.complex_inference"]], "coverage() (pypath.core.annot.vesiclepedia method)": [[90, "pypath.core.annot.Vesiclepedia.coverage"]], "curation_effort() (pypath.core.annot.vesiclepedia method)": [[90, "pypath.core.annot.Vesiclepedia.curation_effort"]], "get_names() (pypath.core.annot.vesiclepedia method)": [[90, "pypath.core.annot.Vesiclepedia.get_names"]], "get_reference_set() (pypath.core.annot.vesiclepedia static method)": [[90, "pypath.core.annot.Vesiclepedia.get_reference_set"]], "get_subset() (pypath.core.annot.vesiclepedia method)": [[90, "pypath.core.annot.Vesiclepedia.get_subset"]], "get_subset_bool_array() (pypath.core.annot.vesiclepedia method)": [[90, "pypath.core.annot.Vesiclepedia.get_subset_bool_array"]], "get_values() (pypath.core.annot.vesiclepedia method)": [[90, "pypath.core.annot.Vesiclepedia.get_values"]], "labels() (pypath.core.annot.vesiclepedia method)": [[90, "pypath.core.annot.Vesiclepedia.labels"]], "load() (pypath.core.annot.vesiclepedia method)": [[90, "pypath.core.annot.Vesiclepedia.load"]], "load_data() (pypath.core.annot.vesiclepedia method)": [[90, "pypath.core.annot.Vesiclepedia.load_data"]], "load_proteins() (pypath.core.annot.vesiclepedia method)": [[90, "pypath.core.annot.Vesiclepedia.load_proteins"]], "make_df() (pypath.core.annot.vesiclepedia method)": [[90, "pypath.core.annot.Vesiclepedia.make_df"]], "numof_entities() (pypath.core.annot.vesiclepedia method)": [[90, "pypath.core.annot.Vesiclepedia.numof_entities"]], "numof_records() (pypath.core.annot.vesiclepedia method)": [[90, "pypath.core.annot.Vesiclepedia.numof_records"]], "numof_references() (pypath.core.annot.vesiclepedia method)": [[90, "pypath.core.annot.Vesiclepedia.numof_references"]], "process() (pypath.core.annot.vesiclepedia method)": [[90, "pypath.core.annot.Vesiclepedia.process"]], "reload() (pypath.core.annot.vesiclepedia method)": [[90, "pypath.core.annot.Vesiclepedia.reload"]], "select() (pypath.core.annot.vesiclepedia method)": [[90, "pypath.core.annot.Vesiclepedia.select"]], "set_method() (pypath.core.annot.vesiclepedia method)": [[90, "pypath.core.annot.Vesiclepedia.set_method"]], "set_reference_set() (pypath.core.annot.vesiclepedia method)": [[90, "pypath.core.annot.Vesiclepedia.set_reference_set"]], "show() (pypath.core.annot.vesiclepedia method)": [[90, "pypath.core.annot.Vesiclepedia.show"]], "subset_intersection() (pypath.core.annot.vesiclepedia method)": [[90, "pypath.core.annot.Vesiclepedia.subset_intersection"]], "to_array() (pypath.core.annot.vesiclepedia method)": [[90, "pypath.core.annot.Vesiclepedia.to_array"]], "to_bool_array() (pypath.core.annot.vesiclepedia method)": [[90, "pypath.core.annot.Vesiclepedia.to_bool_array"]], "to_set() (pypath.core.annot.vesiclepedia method)": [[90, "pypath.core.annot.Vesiclepedia.to_set"]], "wang (class in pypath.core.annot)": [[91, "pypath.core.annot.Wang"]], "__init__() (pypath.core.annot.wang method)": [[91, "pypath.core.annot.Wang.__init__"]], "add_complexes_by_inference() (pypath.core.annot.wang method)": [[91, "pypath.core.annot.Wang.add_complexes_by_inference"]], "all_complexes() (pypath.core.annot.wang method)": [[91, "pypath.core.annot.Wang.all_complexes"]], "all_entities() (pypath.core.annot.wang method)": [[91, "pypath.core.annot.Wang.all_entities"]], "all_mirnas() (pypath.core.annot.wang method)": [[91, "pypath.core.annot.Wang.all_mirnas"]], "all_proteins() (pypath.core.annot.wang method)": [[91, "pypath.core.annot.Wang.all_proteins"]], "all_refs() (pypath.core.annot.wang method)": [[91, "pypath.core.annot.Wang.all_refs"]], "annotate_complex() (pypath.core.annot.wang method)": [[91, "pypath.core.annot.Wang.annotate_complex"]], "browse() (pypath.core.annot.wang method)": [[91, "pypath.core.annot.Wang.browse"]], "complex_inference() (pypath.core.annot.wang method)": [[91, "pypath.core.annot.Wang.complex_inference"]], "coverage() (pypath.core.annot.wang method)": [[91, "pypath.core.annot.Wang.coverage"]], "curation_effort() (pypath.core.annot.wang method)": [[91, "pypath.core.annot.Wang.curation_effort"]], "get_names() (pypath.core.annot.wang method)": [[91, "pypath.core.annot.Wang.get_names"]], "get_reference_set() (pypath.core.annot.wang static method)": [[91, "pypath.core.annot.Wang.get_reference_set"]], "get_subset() (pypath.core.annot.wang method)": [[91, "pypath.core.annot.Wang.get_subset"]], "get_subset_bool_array() (pypath.core.annot.wang method)": [[91, "pypath.core.annot.Wang.get_subset_bool_array"]], "get_values() (pypath.core.annot.wang method)": [[91, "pypath.core.annot.Wang.get_values"]], "labels() (pypath.core.annot.wang method)": [[91, "pypath.core.annot.Wang.labels"]], "load() (pypath.core.annot.wang method)": [[91, "pypath.core.annot.Wang.load"]], "load_data() (pypath.core.annot.wang method)": [[91, "pypath.core.annot.Wang.load_data"]], "load_proteins() (pypath.core.annot.wang method)": [[91, "pypath.core.annot.Wang.load_proteins"]], "make_df() (pypath.core.annot.wang method)": [[91, "pypath.core.annot.Wang.make_df"]], "numof_entities() (pypath.core.annot.wang method)": [[91, "pypath.core.annot.Wang.numof_entities"]], "numof_records() (pypath.core.annot.wang method)": [[91, "pypath.core.annot.Wang.numof_records"]], "numof_references() (pypath.core.annot.wang method)": [[91, "pypath.core.annot.Wang.numof_references"]], "process() (pypath.core.annot.wang method)": [[91, "pypath.core.annot.Wang.process"]], "reload() (pypath.core.annot.wang method)": [[91, "pypath.core.annot.Wang.reload"]], "select() (pypath.core.annot.wang method)": [[91, "pypath.core.annot.Wang.select"]], "set_method() (pypath.core.annot.wang method)": [[91, "pypath.core.annot.Wang.set_method"]], "set_reference_set() (pypath.core.annot.wang method)": [[91, "pypath.core.annot.Wang.set_reference_set"]], "show() (pypath.core.annot.wang method)": [[91, "pypath.core.annot.Wang.show"]], "subset_intersection() (pypath.core.annot.wang method)": [[91, "pypath.core.annot.Wang.subset_intersection"]], "to_array() (pypath.core.annot.wang method)": [[91, "pypath.core.annot.Wang.to_array"]], "to_bool_array() (pypath.core.annot.wang method)": [[91, "pypath.core.annot.Wang.to_bool_array"]], "to_set() (pypath.core.annot.wang method)": [[91, "pypath.core.annot.Wang.to_set"]], "zhong2015 (class in pypath.core.annot)": [[92, "pypath.core.annot.Zhong2015"]], "__init__() (pypath.core.annot.zhong2015 method)": [[92, "pypath.core.annot.Zhong2015.__init__"]], "add_complexes_by_inference() (pypath.core.annot.zhong2015 method)": [[92, "pypath.core.annot.Zhong2015.add_complexes_by_inference"]], "all_complexes() (pypath.core.annot.zhong2015 method)": [[92, "pypath.core.annot.Zhong2015.all_complexes"]], "all_entities() (pypath.core.annot.zhong2015 method)": [[92, "pypath.core.annot.Zhong2015.all_entities"]], "all_mirnas() (pypath.core.annot.zhong2015 method)": [[92, "pypath.core.annot.Zhong2015.all_mirnas"]], "all_proteins() (pypath.core.annot.zhong2015 method)": [[92, "pypath.core.annot.Zhong2015.all_proteins"]], "all_refs() (pypath.core.annot.zhong2015 method)": [[92, "pypath.core.annot.Zhong2015.all_refs"]], "annotate_complex() (pypath.core.annot.zhong2015 method)": [[92, "pypath.core.annot.Zhong2015.annotate_complex"]], "browse() (pypath.core.annot.zhong2015 method)": [[92, "pypath.core.annot.Zhong2015.browse"]], "complex_inference() (pypath.core.annot.zhong2015 method)": [[92, "pypath.core.annot.Zhong2015.complex_inference"]], "coverage() (pypath.core.annot.zhong2015 method)": [[92, "pypath.core.annot.Zhong2015.coverage"]], "curation_effort() (pypath.core.annot.zhong2015 method)": [[92, "pypath.core.annot.Zhong2015.curation_effort"]], "get_names() (pypath.core.annot.zhong2015 method)": [[92, "pypath.core.annot.Zhong2015.get_names"]], "get_reference_set() (pypath.core.annot.zhong2015 static method)": [[92, "pypath.core.annot.Zhong2015.get_reference_set"]], "get_subset() (pypath.core.annot.zhong2015 method)": [[92, "pypath.core.annot.Zhong2015.get_subset"]], "get_subset_bool_array() (pypath.core.annot.zhong2015 method)": [[92, "pypath.core.annot.Zhong2015.get_subset_bool_array"]], "get_values() (pypath.core.annot.zhong2015 method)": [[92, "pypath.core.annot.Zhong2015.get_values"]], "labels() (pypath.core.annot.zhong2015 method)": [[92, "pypath.core.annot.Zhong2015.labels"]], "load() (pypath.core.annot.zhong2015 method)": [[92, "pypath.core.annot.Zhong2015.load"]], "load_data() (pypath.core.annot.zhong2015 method)": [[92, "pypath.core.annot.Zhong2015.load_data"]], "load_proteins() (pypath.core.annot.zhong2015 method)": [[92, "pypath.core.annot.Zhong2015.load_proteins"]], "make_df() (pypath.core.annot.zhong2015 method)": [[92, "pypath.core.annot.Zhong2015.make_df"]], "numof_entities() (pypath.core.annot.zhong2015 method)": [[92, "pypath.core.annot.Zhong2015.numof_entities"]], "numof_records() (pypath.core.annot.zhong2015 method)": [[92, "pypath.core.annot.Zhong2015.numof_records"]], "numof_references() (pypath.core.annot.zhong2015 method)": [[92, "pypath.core.annot.Zhong2015.numof_references"]], "process() (pypath.core.annot.zhong2015 method)": [[92, "pypath.core.annot.Zhong2015.process"]], "reload() (pypath.core.annot.zhong2015 method)": [[92, "pypath.core.annot.Zhong2015.reload"]], "select() (pypath.core.annot.zhong2015 method)": [[92, "pypath.core.annot.Zhong2015.select"]], "set_method() (pypath.core.annot.zhong2015 method)": [[92, "pypath.core.annot.Zhong2015.set_method"]], "set_reference_set() (pypath.core.annot.zhong2015 method)": [[92, "pypath.core.annot.Zhong2015.set_reference_set"]], "show() (pypath.core.annot.zhong2015 method)": [[92, "pypath.core.annot.Zhong2015.show"]], "subset_intersection() (pypath.core.annot.zhong2015 method)": [[92, "pypath.core.annot.Zhong2015.subset_intersection"]], "to_array() (pypath.core.annot.zhong2015 method)": [[92, "pypath.core.annot.Zhong2015.to_array"]], "to_bool_array() (pypath.core.annot.zhong2015 method)": [[92, "pypath.core.annot.Zhong2015.to_bool_array"]], "to_set() (pypath.core.annot.zhong2015 method)": [[92, "pypath.core.annot.Zhong2015.to_set"]], "get_db() (in module pypath.core.annot)": [[93, "pypath.core.annot.get_db"]], "init_db() (in module pypath.core.annot)": [[94, "pypath.core.annot.init_db"]], "pypath.core.attrs": [[95, "module-pypath.core.attrs"]], "attributehandler (class in pypath.core.attrs)": [[96, "pypath.core.attrs.AttributeHandler"]], "__init__() (pypath.core.attrs.attributehandler method)": [[96, "pypath.core.attrs.AttributeHandler.__init__"]], "serialize() (pypath.core.attrs.attributehandler method)": [[96, "pypath.core.attrs.AttributeHandler.serialize"]], "update_attrs() (pypath.core.attrs.attributehandler method)": [[96, "pypath.core.attrs.AttributeHandler.update_attrs"]], "pypath.core.common": [[97, "module-pypath.core.common"]], "filter_network_df() (in module pypath.core.common)": [[98, "pypath.core.common.filter_network_df"]], "pypath.core.complex": [[99, "module-pypath.core.complex"]], "abstractcomplexresource (class in pypath.core.complex)": [[100, "pypath.core.complex.AbstractComplexResource"]], "__init__() (pypath.core.complex.abstractcomplexresource method)": [[100, "pypath.core.complex.AbstractComplexResource.__init__"]], "load_data() (pypath.core.complex.abstractcomplexresource method)": [[100, "pypath.core.complex.AbstractComplexResource.load_data"]], "process() (pypath.core.complex.abstractcomplexresource method)": [[100, "pypath.core.complex.AbstractComplexResource.process"]], "set_method() (pypath.core.complex.abstractcomplexresource method)": [[100, "pypath.core.complex.AbstractComplexResource.set_method"]], "cellphonedb (class in pypath.core.complex)": [[101, "pypath.core.complex.CellPhoneDB"]], "__init__() (pypath.core.complex.cellphonedb method)": [[101, "pypath.core.complex.CellPhoneDB.__init__"]], "load_data() (pypath.core.complex.cellphonedb method)": [[101, "pypath.core.complex.CellPhoneDB.load_data"]], "process() (pypath.core.complex.cellphonedb method)": [[101, "pypath.core.complex.CellPhoneDB.process"]], "set_method() (pypath.core.complex.cellphonedb method)": [[101, "pypath.core.complex.CellPhoneDB.set_method"]], "cellchatdb (class in pypath.core.complex)": [[102, "pypath.core.complex.Cellchatdb"]], "__init__() (pypath.core.complex.cellchatdb method)": [[102, "pypath.core.complex.Cellchatdb.__init__"]], "load_data() (pypath.core.complex.cellchatdb method)": [[102, "pypath.core.complex.Cellchatdb.load_data"]], "process() (pypath.core.complex.cellchatdb method)": [[102, "pypath.core.complex.Cellchatdb.process"]], "set_method() (pypath.core.complex.cellchatdb method)": [[102, "pypath.core.complex.Cellchatdb.set_method"]], "cellinker (class in pypath.core.complex)": [[103, "pypath.core.complex.Cellinker"]], "__init__() (pypath.core.complex.cellinker method)": [[103, "pypath.core.complex.Cellinker.__init__"]], "load_data() (pypath.core.complex.cellinker method)": [[103, "pypath.core.complex.Cellinker.load_data"]], "process() (pypath.core.complex.cellinker method)": [[103, "pypath.core.complex.Cellinker.process"]], "set_method() (pypath.core.complex.cellinker method)": [[103, "pypath.core.complex.Cellinker.set_method"]], "compleat (class in pypath.core.complex)": [[104, "pypath.core.complex.Compleat"]], "__init__() (pypath.core.complex.compleat method)": [[104, "pypath.core.complex.Compleat.__init__"]], "load_data() (pypath.core.complex.compleat method)": [[104, "pypath.core.complex.Compleat.load_data"]], "process() (pypath.core.complex.compleat method)": [[104, "pypath.core.complex.Compleat.process"]], "set_method() (pypath.core.complex.compleat method)": [[104, "pypath.core.complex.Compleat.set_method"]], "complexaggregator (class in pypath.core.complex)": [[105, "pypath.core.complex.ComplexAggregator"]], "__init__() (pypath.core.complex.complexaggregator method)": [[105, "pypath.core.complex.ComplexAggregator.__init__"]], "load_data() (pypath.core.complex.complexaggregator method)": [[105, "pypath.core.complex.ComplexAggregator.load_data"]], "process() (pypath.core.complex.complexaggregator method)": [[105, "pypath.core.complex.ComplexAggregator.process"]], "reload() (pypath.core.complex.complexaggregator method)": [[105, "pypath.core.complex.ComplexAggregator.reload"]], "set_method() (pypath.core.complex.complexaggregator method)": [[105, "pypath.core.complex.ComplexAggregator.set_method"]], "complexportal (class in pypath.core.complex)": [[106, "pypath.core.complex.ComplexPortal"]], "__init__() (pypath.core.complex.complexportal method)": [[106, "pypath.core.complex.ComplexPortal.__init__"]], "load_data() (pypath.core.complex.complexportal method)": [[106, "pypath.core.complex.ComplexPortal.load_data"]], "process() (pypath.core.complex.complexportal method)": [[106, "pypath.core.complex.ComplexPortal.process"]], "set_method() (pypath.core.complex.complexportal method)": [[106, "pypath.core.complex.ComplexPortal.set_method"]], "corum (class in pypath.core.complex)": [[107, "pypath.core.complex.Corum"]], "__init__() (pypath.core.complex.corum method)": [[107, "pypath.core.complex.Corum.__init__"]], "load_data() (pypath.core.complex.corum method)": [[107, "pypath.core.complex.Corum.load_data"]], "process() (pypath.core.complex.corum method)": [[107, "pypath.core.complex.Corum.process"]], "set_method() (pypath.core.complex.corum method)": [[107, "pypath.core.complex.Corum.set_method"]], "guidetopharmacology (class in pypath.core.complex)": [[108, "pypath.core.complex.GuideToPharmacology"]], "__init__() (pypath.core.complex.guidetopharmacology method)": [[108, "pypath.core.complex.GuideToPharmacology.__init__"]], "load_data() (pypath.core.complex.guidetopharmacology method)": [[108, "pypath.core.complex.GuideToPharmacology.load_data"]], "process() (pypath.core.complex.guidetopharmacology method)": [[108, "pypath.core.complex.GuideToPharmacology.process"]], "set_method() (pypath.core.complex.guidetopharmacology method)": [[108, "pypath.core.complex.GuideToPharmacology.set_method"]], "havugimana (class in pypath.core.complex)": [[109, "pypath.core.complex.Havugimana"]], "__init__() (pypath.core.complex.havugimana method)": [[109, "pypath.core.complex.Havugimana.__init__"]], "load_data() (pypath.core.complex.havugimana method)": [[109, "pypath.core.complex.Havugimana.load_data"]], "process() (pypath.core.complex.havugimana method)": [[109, "pypath.core.complex.Havugimana.process"]], "set_method() (pypath.core.complex.havugimana method)": [[109, "pypath.core.complex.Havugimana.set_method"]], "hpmr (class in pypath.core.complex)": [[110, "pypath.core.complex.Hpmr"]], "__init__() (pypath.core.complex.hpmr method)": [[110, "pypath.core.complex.Hpmr.__init__"]], "load_data() (pypath.core.complex.hpmr method)": [[110, "pypath.core.complex.Hpmr.load_data"]], "process() (pypath.core.complex.hpmr method)": [[110, "pypath.core.complex.Hpmr.process"]], "set_method() (pypath.core.complex.hpmr method)": [[110, "pypath.core.complex.Hpmr.set_method"]], "humap (class in pypath.core.complex)": [[111, "pypath.core.complex.Humap"]], "__init__() (pypath.core.complex.humap method)": [[111, "pypath.core.complex.Humap.__init__"]], "load_data() (pypath.core.complex.humap method)": [[111, "pypath.core.complex.Humap.load_data"]], "process() (pypath.core.complex.humap method)": [[111, "pypath.core.complex.Humap.process"]], "set_method() (pypath.core.complex.humap method)": [[111, "pypath.core.complex.Humap.set_method"]], "humap2 (class in pypath.core.complex)": [[112, "pypath.core.complex.Humap2"]], "__init__() (pypath.core.complex.humap2 method)": [[112, "pypath.core.complex.Humap2.__init__"]], "load_data() (pypath.core.complex.humap2 method)": [[112, "pypath.core.complex.Humap2.load_data"]], "process() (pypath.core.complex.humap2 method)": [[112, "pypath.core.complex.Humap2.process"]], "set_method() (pypath.core.complex.humap2 method)": [[112, "pypath.core.complex.Humap2.set_method"]], "icellnet (class in pypath.core.complex)": [[113, "pypath.core.complex.Icellnet"]], "__init__() (pypath.core.complex.icellnet method)": [[113, "pypath.core.complex.Icellnet.__init__"]], "load_data() (pypath.core.complex.icellnet method)": [[113, "pypath.core.complex.Icellnet.load_data"]], "process() (pypath.core.complex.icellnet method)": [[113, "pypath.core.complex.Icellnet.process"]], "set_method() (pypath.core.complex.icellnet method)": [[113, "pypath.core.complex.Icellnet.set_method"]], "kegg (class in pypath.core.complex)": [[114, "pypath.core.complex.Kegg"]], "__init__() (pypath.core.complex.kegg method)": [[114, "pypath.core.complex.Kegg.__init__"]], "load_data() (pypath.core.complex.kegg method)": [[114, "pypath.core.complex.Kegg.load_data"]], "process() (pypath.core.complex.kegg method)": [[114, "pypath.core.complex.Kegg.process"]], "set_method() (pypath.core.complex.kegg method)": [[114, "pypath.core.complex.Kegg.set_method"]], "pdb (class in pypath.core.complex)": [[115, "pypath.core.complex.Pdb"]], "__init__() (pypath.core.complex.pdb method)": [[115, "pypath.core.complex.Pdb.__init__"]], "load_data() (pypath.core.complex.pdb method)": [[115, "pypath.core.complex.Pdb.load_data"]], "process() (pypath.core.complex.pdb method)": [[115, "pypath.core.complex.Pdb.process"]], "set_method() (pypath.core.complex.pdb method)": [[115, "pypath.core.complex.Pdb.set_method"]], "signor (class in pypath.core.complex)": [[116, "pypath.core.complex.Signor"]], "__init__() (pypath.core.complex.signor method)": [[116, "pypath.core.complex.Signor.__init__"]], "load_data() (pypath.core.complex.signor method)": [[116, "pypath.core.complex.Signor.load_data"]], "process() (pypath.core.complex.signor method)": [[116, "pypath.core.complex.Signor.process"]], "set_method() (pypath.core.complex.signor method)": [[116, "pypath.core.complex.Signor.set_method"]], "spike (class in pypath.core.complex)": [[117, "pypath.core.complex.Spike"]], "__init__() (pypath.core.complex.spike method)": [[117, "pypath.core.complex.Spike.__init__"]], "load_data() (pypath.core.complex.spike method)": [[117, "pypath.core.complex.Spike.load_data"]], "process() (pypath.core.complex.spike method)": [[117, "pypath.core.complex.Spike.process"]], "set_method() (pypath.core.complex.spike method)": [[117, "pypath.core.complex.Spike.set_method"]], "all_complexes() (in module pypath.core.complex)": [[118, "pypath.core.complex.all_complexes"]], "get_db() (in module pypath.core.complex)": [[119, "pypath.core.complex.get_db"]], "init_db() (in module pypath.core.complex)": [[120, "pypath.core.complex.init_db"]], "pypath.core.entity": [[121, "module-pypath.core.entity"]], "entity (class in pypath.core.entity)": [[122, "pypath.core.entity.Entity"]], "__init__() (pypath.core.entity.entity method)": [[122, "pypath.core.entity.Entity.__init__"]], "count_entity_type() (pypath.core.entity.entity class method)": [[122, "pypath.core.entity.Entity.count_entity_type"]], "filter_entity_type() (pypath.core.entity.entity class method)": [[122, "pypath.core.entity.Entity.filter_entity_type"]], "serialize() (pypath.core.entity.entity method)": [[122, "pypath.core.entity.Entity.serialize"]], "update_attrs() (pypath.core.entity.entity method)": [[122, "pypath.core.entity.Entity.update_attrs"]], "entitykey (class in pypath.core.entity)": [[123, "pypath.core.entity.EntityKey"]], "__init__() (pypath.core.entity.entitykey method)": [[123, "pypath.core.entity.EntityKey.__init__"]], "count() (pypath.core.entity.entitykey method)": [[123, "pypath.core.entity.EntityKey.count"]], "entity_type (pypath.core.entity.entitykey attribute)": [[123, "pypath.core.entity.EntityKey.entity_type"]], "id_type (pypath.core.entity.entitykey attribute)": [[123, "pypath.core.entity.EntityKey.id_type"]], "identifier (pypath.core.entity.entitykey attribute)": [[123, "pypath.core.entity.EntityKey.identifier"]], "index() (pypath.core.entity.entitykey method)": [[123, "pypath.core.entity.EntityKey.index"]], "taxon (pypath.core.entity.entitykey attribute)": [[123, "pypath.core.entity.EntityKey.taxon"]], "entitylist (class in pypath.core.entity)": [[124, "pypath.core.entity.EntityList"]], "__init__() (pypath.core.entity.entitylist method)": [[124, "pypath.core.entity.EntityList.__init__"]], "pypath.core.enz_sub": [[125, "module-pypath.core.enz_sub"]], "enzymesubstrateaggregator (class in pypath.core.enz_sub)": [[126, "pypath.core.enz_sub.EnzymeSubstrateAggregator"]], "__init__() (pypath.core.enz_sub.enzymesubstrateaggregator method)": [[126, "pypath.core.enz_sub.EnzymeSubstrateAggregator.__init__"]], "assign_to_network() (pypath.core.enz_sub.enzymesubstrateaggregator method)": [[126, "pypath.core.enz_sub.EnzymeSubstrateAggregator.assign_to_network"]], "build_list() (pypath.core.enz_sub.enzymesubstrateaggregator method)": [[126, "pypath.core.enz_sub.EnzymeSubstrateAggregator.build_list"]], "unique() (pypath.core.enz_sub.enzymesubstrateaggregator method)": [[126, "pypath.core.enz_sub.EnzymeSubstrateAggregator.unique"]], "enzymesubstrateorthologyprocessor (class in pypath.core.enz_sub)": [[127, "pypath.core.enz_sub.EnzymeSubstrateOrthologyProcessor"]], "__init__() (pypath.core.enz_sub.enzymesubstrateorthologyprocessor method)": [[127, "pypath.core.enz_sub.EnzymeSubstrateOrthologyProcessor.__init__"]], "load_data() (pypath.core.enz_sub.enzymesubstrateorthologyprocessor method)": [[127, "pypath.core.enz_sub.EnzymeSubstrateOrthologyProcessor.load_data"]], "ptm_orthology() (pypath.core.enz_sub.enzymesubstrateorthologyprocessor method)": [[127, "pypath.core.enz_sub.EnzymeSubstrateOrthologyProcessor.ptm_orthology"]], "set_inputargs() (pypath.core.enz_sub.enzymesubstrateorthologyprocessor method)": [[127, "pypath.core.enz_sub.EnzymeSubstrateOrthologyProcessor.set_inputargs"]], "set_method() (pypath.core.enz_sub.enzymesubstrateorthologyprocessor method)": [[127, "pypath.core.enz_sub.EnzymeSubstrateOrthologyProcessor.set_method"]], "translate() (pypath.core.enz_sub.enzymesubstrateorthologyprocessor method)": [[127, "pypath.core.enz_sub.EnzymeSubstrateOrthologyProcessor.translate"]], "translate_site() (pypath.core.enz_sub.enzymesubstrateorthologyprocessor method)": [[127, "pypath.core.enz_sub.EnzymeSubstrateOrthologyProcessor.translate_site"]], "enzymesubstrateprocessor (class in pypath.core.enz_sub)": [[128, "pypath.core.enz_sub.EnzymeSubstrateProcessor"]], "__init__() (pypath.core.enz_sub.enzymesubstrateprocessor method)": [[128, "pypath.core.enz_sub.EnzymeSubstrateProcessor.__init__"]], "load_data() (pypath.core.enz_sub.enzymesubstrateprocessor method)": [[128, "pypath.core.enz_sub.EnzymeSubstrateProcessor.load_data"]], "set_inputargs() (pypath.core.enz_sub.enzymesubstrateprocessor method)": [[128, "pypath.core.enz_sub.EnzymeSubstrateProcessor.set_inputargs"]], "set_method() (pypath.core.enz_sub.enzymesubstrateprocessor method)": [[128, "pypath.core.enz_sub.EnzymeSubstrateProcessor.set_method"]], "get_db() (in module pypath.core.enz_sub)": [[129, "pypath.core.enz_sub.get_db"]], "init_db() (in module pypath.core.enz_sub)": [[130, "pypath.core.enz_sub.init_db"]], "pypath.core.evidence": [[131, "module-pypath.core.evidence"]], "evidence (class in pypath.core.evidence)": [[132, "pypath.core.evidence.Evidence"]], "__init__() (pypath.core.evidence.evidence method)": [[132, "pypath.core.evidence.Evidence.__init__"]], "asdict() (pypath.core.evidence.evidence method)": [[132, "pypath.core.evidence.Evidence.asdict"]], "has_interaction_type() (pypath.core.evidence.evidence method)": [[132, "pypath.core.evidence.Evidence.has_interaction_type"]], "merge() (pypath.core.evidence.evidence method)": [[132, "pypath.core.evidence.Evidence.merge"]], "pubmeds (pypath.core.evidence.evidence property)": [[132, "pypath.core.evidence.Evidence.pubmeds"]], "reload() (pypath.core.evidence.evidence method)": [[132, "pypath.core.evidence.Evidence.reload"]], "serialize() (pypath.core.evidence.evidence method)": [[132, "pypath.core.evidence.Evidence.serialize"]], "update_attrs() (pypath.core.evidence.evidence method)": [[132, "pypath.core.evidence.Evidence.update_attrs"]], "evidences (class in pypath.core.evidence)": [[133, "pypath.core.evidence.Evidences"]], "__init__() (pypath.core.evidence.evidences method)": [[133, "pypath.core.evidence.Evidences.__init__"]], "asdict() (pypath.core.evidence.evidences method)": [[133, "pypath.core.evidence.Evidences.asdict"]], "attrs (pypath.core.evidence.evidences property)": [[133, "pypath.core.evidence.Evidences.attrs"]], "datasets (pypath.core.evidence.evidences property)": [[133, "pypath.core.evidence.Evidences.datasets"]], "has_dataset() (pypath.core.evidence.evidences method)": [[133, "pypath.core.evidence.Evidences.has_dataset"]], "has_interaction_type() (pypath.core.evidence.evidences method)": [[133, "pypath.core.evidence.Evidences.has_interaction_type"]], "items() (pypath.core.evidence.evidences method)": [[133, "pypath.core.evidence.Evidences.items"]], "keys() (pypath.core.evidence.evidences method)": [[133, "pypath.core.evidence.Evidences.keys"]], "reload() (pypath.core.evidence.evidences method)": [[133, "pypath.core.evidence.Evidences.reload"]], "serialize_attrs() (pypath.core.evidence.evidences method)": [[133, "pypath.core.evidence.Evidences.serialize_attrs"]], "simple_dict (pypath.core.evidence.evidences property)": [[133, "pypath.core.evidence.Evidences.simple_dict"]], "pypath.core.interaction": [[134, "module-pypath.core.interaction"]], "interaction (class in pypath.core.interaction)": [[135, "pypath.core.interaction.Interaction"]], "__init__() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.__init__"]], "add_evidence() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.add_evidence"]], "add_sign() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.add_sign"]], "asdict() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.asdict"]], "complex_identifiers_by_data_model() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.complex_identifiers_by_data_model"]], "complex_identifiers_by_interaction_type() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.complex_identifiers_by_interaction_type"]], "complex_identifiers_by_interaction_type_and_data_model() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.complex_identifiers_by_interaction_type_and_data_model"]], "complex_identifiers_by_interaction_type_and_data_model_and_resource() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.complex_identifiers_by_interaction_type_and_data_model_and_resource"]], "complex_identifiers_by_reference() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.complex_identifiers_by_reference"]], "complex_identifiers_by_resource() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.complex_identifiers_by_resource"]], "complex_labels_by_data_model() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.complex_labels_by_data_model"]], "complex_labels_by_interaction_type() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.complex_labels_by_interaction_type"]], "complex_labels_by_interaction_type_and_data_model() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.complex_labels_by_interaction_type_and_data_model"]], "complex_labels_by_interaction_type_and_data_model_and_resource() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.complex_labels_by_interaction_type_and_data_model_and_resource"]], "complex_labels_by_reference() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.complex_labels_by_reference"]], "complex_labels_by_resource() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.complex_labels_by_resource"]], "complexes_by_data_model() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.complexes_by_data_model"]], "complexes_by_interaction_type() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.complexes_by_interaction_type"]], "complexes_by_interaction_type_and_data_model() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.complexes_by_interaction_type_and_data_model"]], "complexes_by_interaction_type_and_data_model_and_resource() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.complexes_by_interaction_type_and_data_model_and_resource"]], "complexes_by_reference() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.complexes_by_reference"]], "complexes_by_resource() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.complexes_by_resource"]], "consensus() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.consensus"]], "consensus_edges() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.consensus_edges"]], "count_complex_identifiers() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.count_complex_identifiers"]], "count_complex_labels() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.count_complex_labels"]], "count_complexes() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.count_complexes"]], "count_data_models (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.count_data_models"]], "count_degrees_directed (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.count_degrees_directed"]], "count_degrees_directed_in (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.count_degrees_directed_in"]], "count_degrees_directed_out (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.count_degrees_directed_out"]], "count_degrees_negative (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.count_degrees_negative"]], "count_degrees_negative_in (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.count_degrees_negative_in"]], "count_degrees_negative_out (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.count_degrees_negative_out"]], "count_degrees_non_directed (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.count_degrees_non_directed"]], "count_degrees_positive (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.count_degrees_positive"]], "count_degrees_positive_in (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.count_degrees_positive_in"]], "count_degrees_positive_out (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.count_degrees_positive_out"]], "count_degrees_signed (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.count_degrees_signed"]], "count_degrees_signed_in (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.count_degrees_signed_in"]], "count_degrees_signed_out (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.count_degrees_signed_out"]], "count_degrees_undirected (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.count_degrees_undirected"]], "count_entities() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.count_entities"]], "count_identifiers() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.count_identifiers"]], "count_interaction_types (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.count_interaction_types"]], "count_interactions() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.count_interactions"]], "count_interactions_0() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.count_interactions_0"]], "count_interactions_directed() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.count_interactions_directed"]], "count_interactions_mutual() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.count_interactions_mutual"]], "count_interactions_negative() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.count_interactions_negative"]], "count_interactions_non_directed() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.count_interactions_non_directed"]], "count_interactions_positive() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.count_interactions_positive"]], "count_interactions_signed() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.count_interactions_signed"]], "count_interactions_undirected() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.count_interactions_undirected"]], "count_labels() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.count_labels"]], "count_lncrna_identifiers() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.count_lncrna_identifiers"]], "count_lncrna_labels() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.count_lncrna_labels"]], "count_lncrnas() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.count_lncrnas"]], "count_mirna_identifiers() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.count_mirna_identifiers"]], "count_mirna_labels() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.count_mirna_labels"]], "count_mirnas() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.count_mirnas"]], "count_protein_identifiers() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.count_protein_identifiers"]], "count_protein_labels() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.count_protein_labels"]], "count_proteins() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.count_proteins"]], "count_references (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.count_references"]], "count_resource_names (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.count_resource_names"]], "count_resource_names_via (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.count_resource_names_via"]], "count_resources (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.count_resources"]], "count_resources_via (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.count_resources_via"]], "count_small_molecule_identifiers() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.count_small_molecule_identifiers"]], "count_small_molecule_labels() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.count_small_molecule_labels"]], "count_small_molecules() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.count_small_molecules"]], "data_models_by_data_model (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.data_models_by_data_model"]], "data_models_by_interaction_type (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.data_models_by_interaction_type"]], "data_models_by_interaction_type_and_data_model (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.data_models_by_interaction_type_and_data_model"]], "data_models_by_interaction_type_and_data_model_and_resource (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.data_models_by_interaction_type_and_data_model_and_resource"]], "data_models_by_reference (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.data_models_by_reference"]], "data_models_by_resource (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.data_models_by_resource"]], "datasets_by_data_model (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.datasets_by_data_model"]], "datasets_by_interaction_type (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.datasets_by_interaction_type"]], "datasets_by_interaction_type_and_data_model (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.datasets_by_interaction_type_and_data_model"]], "datasets_by_interaction_type_and_data_model_and_resource (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.datasets_by_interaction_type_and_data_model_and_resource"]], "datasets_by_reference (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.datasets_by_reference"]], "datasets_by_resource (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.datasets_by_resource"]], "degrees_directed_by_data_model (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.degrees_directed_by_data_model"]], "degrees_directed_by_interaction_type (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.degrees_directed_by_interaction_type"]], "degrees_directed_by_interaction_type_and_data_model (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.degrees_directed_by_interaction_type_and_data_model"]], "degrees_directed_by_interaction_type_and_data_model_and_resource (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.degrees_directed_by_interaction_type_and_data_model_and_resource"]], "degrees_directed_by_reference (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.degrees_directed_by_reference"]], "degrees_directed_by_resource (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.degrees_directed_by_resource"]], "degrees_directed_in_by_data_model (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.degrees_directed_in_by_data_model"]], "degrees_directed_in_by_interaction_type (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.degrees_directed_in_by_interaction_type"]], "degrees_directed_in_by_interaction_type_and_data_model (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.degrees_directed_in_by_interaction_type_and_data_model"]], "degrees_directed_in_by_interaction_type_and_data_model_and_resource (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.degrees_directed_in_by_interaction_type_and_data_model_and_resource"]], "degrees_directed_in_by_reference (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.degrees_directed_in_by_reference"]], "degrees_directed_in_by_resource (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.degrees_directed_in_by_resource"]], "degrees_directed_out_by_data_model (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.degrees_directed_out_by_data_model"]], "degrees_directed_out_by_interaction_type (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.degrees_directed_out_by_interaction_type"]], "degrees_directed_out_by_interaction_type_and_data_model (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.degrees_directed_out_by_interaction_type_and_data_model"]], "degrees_directed_out_by_interaction_type_and_data_model_and_resource (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.degrees_directed_out_by_interaction_type_and_data_model_and_resource"]], "degrees_directed_out_by_reference (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.degrees_directed_out_by_reference"]], "degrees_directed_out_by_resource (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.degrees_directed_out_by_resource"]], "degrees_negative_by_data_model (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.degrees_negative_by_data_model"]], "degrees_negative_by_interaction_type (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.degrees_negative_by_interaction_type"]], "degrees_negative_by_interaction_type_and_data_model (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.degrees_negative_by_interaction_type_and_data_model"]], "degrees_negative_by_interaction_type_and_data_model_and_resource (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.degrees_negative_by_interaction_type_and_data_model_and_resource"]], "degrees_negative_by_reference (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.degrees_negative_by_reference"]], "degrees_negative_by_resource (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.degrees_negative_by_resource"]], "degrees_negative_in_by_data_model (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.degrees_negative_in_by_data_model"]], "degrees_negative_in_by_interaction_type (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.degrees_negative_in_by_interaction_type"]], "degrees_negative_in_by_interaction_type_and_data_model (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.degrees_negative_in_by_interaction_type_and_data_model"]], "degrees_negative_in_by_interaction_type_and_data_model_and_resource (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.degrees_negative_in_by_interaction_type_and_data_model_and_resource"]], "degrees_negative_in_by_reference (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.degrees_negative_in_by_reference"]], "degrees_negative_in_by_resource (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.degrees_negative_in_by_resource"]], "degrees_negative_out_by_data_model (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.degrees_negative_out_by_data_model"]], "degrees_negative_out_by_interaction_type (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.degrees_negative_out_by_interaction_type"]], "degrees_negative_out_by_interaction_type_and_data_model (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.degrees_negative_out_by_interaction_type_and_data_model"]], "degrees_negative_out_by_interaction_type_and_data_model_and_resource (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.degrees_negative_out_by_interaction_type_and_data_model_and_resource"]], "degrees_negative_out_by_reference (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.degrees_negative_out_by_reference"]], "degrees_negative_out_by_resource (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.degrees_negative_out_by_resource"]], "degrees_non_directed_by_data_model (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.degrees_non_directed_by_data_model"]], "degrees_non_directed_by_interaction_type (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.degrees_non_directed_by_interaction_type"]], "degrees_non_directed_by_interaction_type_and_data_model (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.degrees_non_directed_by_interaction_type_and_data_model"]], "degrees_non_directed_by_interaction_type_and_data_model_and_resource (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.degrees_non_directed_by_interaction_type_and_data_model_and_resource"]], "degrees_non_directed_by_reference (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.degrees_non_directed_by_reference"]], "degrees_non_directed_by_resource (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.degrees_non_directed_by_resource"]], "degrees_positive_by_data_model (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.degrees_positive_by_data_model"]], "degrees_positive_by_interaction_type (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.degrees_positive_by_interaction_type"]], "degrees_positive_by_interaction_type_and_data_model (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.degrees_positive_by_interaction_type_and_data_model"]], "degrees_positive_by_interaction_type_and_data_model_and_resource (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.degrees_positive_by_interaction_type_and_data_model_and_resource"]], "degrees_positive_by_reference (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.degrees_positive_by_reference"]], "degrees_positive_by_resource (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.degrees_positive_by_resource"]], "degrees_positive_in_by_data_model (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.degrees_positive_in_by_data_model"]], "degrees_positive_in_by_interaction_type (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.degrees_positive_in_by_interaction_type"]], "degrees_positive_in_by_interaction_type_and_data_model (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.degrees_positive_in_by_interaction_type_and_data_model"]], "degrees_positive_in_by_interaction_type_and_data_model_and_resource (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.degrees_positive_in_by_interaction_type_and_data_model_and_resource"]], "degrees_positive_in_by_reference (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.degrees_positive_in_by_reference"]], "degrees_positive_in_by_resource (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.degrees_positive_in_by_resource"]], "degrees_positive_out_by_data_model (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.degrees_positive_out_by_data_model"]], "degrees_positive_out_by_interaction_type (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.degrees_positive_out_by_interaction_type"]], "degrees_positive_out_by_interaction_type_and_data_model (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.degrees_positive_out_by_interaction_type_and_data_model"]], "degrees_positive_out_by_interaction_type_and_data_model_and_resource (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.degrees_positive_out_by_interaction_type_and_data_model_and_resource"]], "degrees_positive_out_by_reference (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.degrees_positive_out_by_reference"]], "degrees_positive_out_by_resource (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.degrees_positive_out_by_resource"]], "degrees_signed_by_data_model (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.degrees_signed_by_data_model"]], "degrees_signed_by_interaction_type (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.degrees_signed_by_interaction_type"]], "degrees_signed_by_interaction_type_and_data_model (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.degrees_signed_by_interaction_type_and_data_model"]], "degrees_signed_by_interaction_type_and_data_model_and_resource (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.degrees_signed_by_interaction_type_and_data_model_and_resource"]], "degrees_signed_by_reference (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.degrees_signed_by_reference"]], "degrees_signed_by_resource (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.degrees_signed_by_resource"]], "degrees_signed_in_by_data_model (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.degrees_signed_in_by_data_model"]], "degrees_signed_in_by_interaction_type (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.degrees_signed_in_by_interaction_type"]], "degrees_signed_in_by_interaction_type_and_data_model (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.degrees_signed_in_by_interaction_type_and_data_model"]], "degrees_signed_in_by_interaction_type_and_data_model_and_resource (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.degrees_signed_in_by_interaction_type_and_data_model_and_resource"]], "degrees_signed_in_by_reference (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.degrees_signed_in_by_reference"]], "degrees_signed_in_by_resource (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.degrees_signed_in_by_resource"]], "degrees_signed_out_by_data_model (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.degrees_signed_out_by_data_model"]], "degrees_signed_out_by_interaction_type (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.degrees_signed_out_by_interaction_type"]], "degrees_signed_out_by_interaction_type_and_data_model (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.degrees_signed_out_by_interaction_type_and_data_model"]], "degrees_signed_out_by_interaction_type_and_data_model_and_resource (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.degrees_signed_out_by_interaction_type_and_data_model_and_resource"]], "degrees_signed_out_by_reference (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.degrees_signed_out_by_reference"]], "degrees_signed_out_by_resource (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.degrees_signed_out_by_resource"]], "degrees_undirected_by_data_model (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.degrees_undirected_by_data_model"]], "degrees_undirected_by_interaction_type (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.degrees_undirected_by_interaction_type"]], "degrees_undirected_by_interaction_type_and_data_model (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.degrees_undirected_by_interaction_type_and_data_model"]], "degrees_undirected_by_interaction_type_and_data_model_and_resource (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.degrees_undirected_by_interaction_type_and_data_model_and_resource"]], "degrees_undirected_by_reference (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.degrees_undirected_by_reference"]], "degrees_undirected_by_resource (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.degrees_undirected_by_resource"]], "direction_key() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.direction_key"]], "dorothea_level() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.dorothea_level"]], "dorothea_levels() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.dorothea_levels"]], "entities_by_data_model() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.entities_by_data_model"]], "entities_by_interaction_type() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.entities_by_interaction_type"]], "entities_by_interaction_type_and_data_model() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.entities_by_interaction_type_and_data_model"]], "entities_by_interaction_type_and_data_model_and_resource() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.entities_by_interaction_type_and_data_model_and_resource"]], "entities_by_reference() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.entities_by_reference"]], "entities_by_resource() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.entities_by_resource"]], "evaluate_evidences() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.evaluate_evidences"]], "generate_df_records() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.generate_df_records"]], "get_attr() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.get_attr"]], "get_complex_identifiers() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.get_complex_identifiers"]], "get_complex_labels() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.get_complex_labels"]], "get_complexes() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.get_complexes"]], "get_data_models (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.get_data_models"]], "get_datasets (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.get_datasets"]], "get_degrees() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.get_degrees"]], "get_degrees_directed (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.get_degrees_directed"]], "get_degrees_directed_in (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.get_degrees_directed_in"]], "get_degrees_directed_out (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.get_degrees_directed_out"]], "get_degrees_negative (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.get_degrees_negative"]], "get_degrees_negative_in (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.get_degrees_negative_in"]], "get_degrees_negative_out (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.get_degrees_negative_out"]], "get_degrees_non_directed (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.get_degrees_non_directed"]], "get_degrees_positive (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.get_degrees_positive"]], "get_degrees_positive_in (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.get_degrees_positive_in"]], "get_degrees_positive_out (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.get_degrees_positive_out"]], "get_degrees_signed (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.get_degrees_signed"]], "get_degrees_signed_in (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.get_degrees_signed_in"]], "get_degrees_signed_out (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.get_degrees_signed_out"]], "get_degrees_undirected (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.get_degrees_undirected"]], "get_direction() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.get_direction"]], "get_directions() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.get_directions"]], "get_entities() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.get_entities"]], "get_identifiers() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.get_identifiers"]], "get_interaction_types (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.get_interaction_types"]], "get_interactions() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.get_interactions"]], "get_interactions_0() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.get_interactions_0"]], "get_interactions_directed() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.get_interactions_directed"]], "get_interactions_mutual() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.get_interactions_mutual"]], "get_interactions_negative() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.get_interactions_negative"]], "get_interactions_non_directed() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.get_interactions_non_directed"]], "get_interactions_non_directed_0() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.get_interactions_non_directed_0"]], "get_interactions_positive() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.get_interactions_positive"]], "get_interactions_signed() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.get_interactions_signed"]], "get_interactions_undirected() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.get_interactions_undirected"]], "get_interactions_undirected_0() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.get_interactions_undirected_0"]], "get_labels() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.get_labels"]], "get_lncrna_identifiers() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.get_lncrna_identifiers"]], "get_lncrna_labels() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.get_lncrna_labels"]], "get_lncrnas() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.get_lncrnas"]], "get_mirna_identifiers() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.get_mirna_identifiers"]], "get_mirna_labels() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.get_mirna_labels"]], "get_mirnas() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.get_mirnas"]], "get_protein_identifiers() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.get_protein_identifiers"]], "get_protein_labels() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.get_protein_labels"]], "get_proteins() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.get_proteins"]], "get_references (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.get_references"]], "get_resource_names (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.get_resource_names"]], "get_resource_names_via (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.get_resource_names_via"]], "get_resources (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.get_resources"]], "get_resources_via (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.get_resources_via"]], "get_sign() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.get_sign"]], "get_small_molecule_identifiers() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.get_small_molecule_identifiers"]], "get_small_molecule_labels() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.get_small_molecule_labels"]], "get_small_molecules() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.get_small_molecules"]], "has_sign() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.has_sign"]], "identifiers_by_data_model() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.identifiers_by_data_model"]], "identifiers_by_interaction_type() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.identifiers_by_interaction_type"]], "identifiers_by_interaction_type_and_data_model() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.identifiers_by_interaction_type_and_data_model"]], "identifiers_by_interaction_type_and_data_model_and_resource() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.identifiers_by_interaction_type_and_data_model_and_resource"]], "identifiers_by_reference() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.identifiers_by_reference"]], "identifiers_by_resource() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.identifiers_by_resource"]], "interaction_types_by_data_model (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.interaction_types_by_data_model"]], "interaction_types_by_interaction_type (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.interaction_types_by_interaction_type"]], "interaction_types_by_interaction_type_and_data_model (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.interaction_types_by_interaction_type_and_data_model"]], "interaction_types_by_interaction_type_and_data_model_and_resource (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.interaction_types_by_interaction_type_and_data_model_and_resource"]], "interaction_types_by_reference (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.interaction_types_by_reference"]], "interaction_types_by_resource (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.interaction_types_by_resource"]], "interactions_0_by_data_model() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.interactions_0_by_data_model"]], "interactions_0_by_interaction_type() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.interactions_0_by_interaction_type"]], "interactions_0_by_interaction_type_and_data_model() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.interactions_0_by_interaction_type_and_data_model"]], "interactions_0_by_interaction_type_and_data_model_and_resource() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.interactions_0_by_interaction_type_and_data_model_and_resource"]], "interactions_0_by_reference() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.interactions_0_by_reference"]], "interactions_0_by_resource() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.interactions_0_by_resource"]], "interactions_by_data_model() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.interactions_by_data_model"]], "interactions_by_interaction_type() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.interactions_by_interaction_type"]], "interactions_by_interaction_type_and_data_model() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.interactions_by_interaction_type_and_data_model"]], "interactions_by_interaction_type_and_data_model_and_resource() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.interactions_by_interaction_type_and_data_model_and_resource"]], "interactions_by_reference() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.interactions_by_reference"]], "interactions_by_resource() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.interactions_by_resource"]], "interactions_directed_by_data_model() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.interactions_directed_by_data_model"]], "interactions_directed_by_interaction_type() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.interactions_directed_by_interaction_type"]], "interactions_directed_by_interaction_type_and_data_model() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.interactions_directed_by_interaction_type_and_data_model"]], "interactions_directed_by_interaction_type_and_data_model_and_resource() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.interactions_directed_by_interaction_type_and_data_model_and_resource"]], "interactions_directed_by_reference() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.interactions_directed_by_reference"]], "interactions_directed_by_resource() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.interactions_directed_by_resource"]], "interactions_mutual_by_data_model() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.interactions_mutual_by_data_model"]], "interactions_mutual_by_interaction_type() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.interactions_mutual_by_interaction_type"]], "interactions_mutual_by_interaction_type_and_data_model() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.interactions_mutual_by_interaction_type_and_data_model"]], "interactions_mutual_by_interaction_type_and_data_model_and_resource() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.interactions_mutual_by_interaction_type_and_data_model_and_resource"]], "interactions_mutual_by_reference() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.interactions_mutual_by_reference"]], "interactions_mutual_by_resource() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.interactions_mutual_by_resource"]], "interactions_negative_by_data_model() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.interactions_negative_by_data_model"]], "interactions_negative_by_interaction_type() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.interactions_negative_by_interaction_type"]], "interactions_negative_by_interaction_type_and_data_model() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.interactions_negative_by_interaction_type_and_data_model"]], "interactions_negative_by_interaction_type_and_data_model_and_resource() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.interactions_negative_by_interaction_type_and_data_model_and_resource"]], "interactions_negative_by_reference() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.interactions_negative_by_reference"]], "interactions_negative_by_resource() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.interactions_negative_by_resource"]], "interactions_non_directed_0_by_data_model() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.interactions_non_directed_0_by_data_model"]], "interactions_non_directed_0_by_interaction_type() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.interactions_non_directed_0_by_interaction_type"]], "interactions_non_directed_0_by_interaction_type_and_data_model() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.interactions_non_directed_0_by_interaction_type_and_data_model"]], "interactions_non_directed_0_by_interaction_type_and_data_model_and_resource() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.interactions_non_directed_0_by_interaction_type_and_data_model_and_resource"]], "interactions_non_directed_0_by_reference() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.interactions_non_directed_0_by_reference"]], "interactions_non_directed_0_by_resource() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.interactions_non_directed_0_by_resource"]], "interactions_non_directed_by_data_model() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.interactions_non_directed_by_data_model"]], "interactions_non_directed_by_interaction_type() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.interactions_non_directed_by_interaction_type"]], "interactions_non_directed_by_interaction_type_and_data_model() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.interactions_non_directed_by_interaction_type_and_data_model"]], "interactions_non_directed_by_interaction_type_and_data_model_and_resource() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.interactions_non_directed_by_interaction_type_and_data_model_and_resource"]], "interactions_non_directed_by_reference() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.interactions_non_directed_by_reference"]], "interactions_non_directed_by_resource() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.interactions_non_directed_by_resource"]], "interactions_positive_by_data_model() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.interactions_positive_by_data_model"]], "interactions_positive_by_interaction_type() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.interactions_positive_by_interaction_type"]], "interactions_positive_by_interaction_type_and_data_model() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.interactions_positive_by_interaction_type_and_data_model"]], "interactions_positive_by_interaction_type_and_data_model_and_resource() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.interactions_positive_by_interaction_type_and_data_model_and_resource"]], "interactions_positive_by_reference() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.interactions_positive_by_reference"]], "interactions_positive_by_resource() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.interactions_positive_by_resource"]], "interactions_signed_by_data_model() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.interactions_signed_by_data_model"]], "interactions_signed_by_interaction_type() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.interactions_signed_by_interaction_type"]], "interactions_signed_by_interaction_type_and_data_model() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.interactions_signed_by_interaction_type_and_data_model"]], "interactions_signed_by_interaction_type_and_data_model_and_resource() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.interactions_signed_by_interaction_type_and_data_model_and_resource"]], "interactions_signed_by_reference() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.interactions_signed_by_reference"]], "interactions_signed_by_resource() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.interactions_signed_by_resource"]], "interactions_undirected_0_by_data_model() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.interactions_undirected_0_by_data_model"]], "interactions_undirected_0_by_interaction_type() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.interactions_undirected_0_by_interaction_type"]], "interactions_undirected_0_by_interaction_type_and_data_model() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.interactions_undirected_0_by_interaction_type_and_data_model"]], "interactions_undirected_0_by_interaction_type_and_data_model_and_resource() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.interactions_undirected_0_by_interaction_type_and_data_model_and_resource"]], "interactions_undirected_0_by_reference() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.interactions_undirected_0_by_reference"]], "interactions_undirected_0_by_resource() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.interactions_undirected_0_by_resource"]], "interactions_undirected_by_data_model() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.interactions_undirected_by_data_model"]], "interactions_undirected_by_interaction_type() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.interactions_undirected_by_interaction_type"]], "interactions_undirected_by_interaction_type_and_data_model() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.interactions_undirected_by_interaction_type_and_data_model"]], "interactions_undirected_by_interaction_type_and_data_model_and_resource() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.interactions_undirected_by_interaction_type_and_data_model_and_resource"]], "interactions_undirected_by_reference() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.interactions_undirected_by_reference"]], "interactions_undirected_by_resource() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.interactions_undirected_by_resource"]], "is_directed() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.is_directed"]], "is_directed_by_resources() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.is_directed_by_resources"]], "is_inhibition() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.is_inhibition"]], "is_loop() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.is_loop"]], "is_mutual() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.is_mutual"]], "is_mutual_by_resources() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.is_mutual_by_resources"]], "is_stimulation() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.is_stimulation"]], "iter_evidences() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.iter_evidences"]], "iter_match_evidences() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.iter_match_evidences"]], "labels_by_data_model() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.labels_by_data_model"]], "labels_by_interaction_type() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.labels_by_interaction_type"]], "labels_by_interaction_type_and_data_model() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.labels_by_interaction_type_and_data_model"]], "labels_by_interaction_type_and_data_model_and_resource() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.labels_by_interaction_type_and_data_model_and_resource"]], "labels_by_reference() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.labels_by_reference"]], "labels_by_resource() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.labels_by_resource"]], "lncrna_identifiers_by_data_model() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.lncrna_identifiers_by_data_model"]], "lncrna_identifiers_by_interaction_type() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.lncrna_identifiers_by_interaction_type"]], "lncrna_identifiers_by_interaction_type_and_data_model() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.lncrna_identifiers_by_interaction_type_and_data_model"]], "lncrna_identifiers_by_interaction_type_and_data_model_and_resource() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.lncrna_identifiers_by_interaction_type_and_data_model_and_resource"]], "lncrna_identifiers_by_reference() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.lncrna_identifiers_by_reference"]], "lncrna_identifiers_by_resource() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.lncrna_identifiers_by_resource"]], "lncrna_labels_by_data_model() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.lncrna_labels_by_data_model"]], "lncrna_labels_by_interaction_type() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.lncrna_labels_by_interaction_type"]], "lncrna_labels_by_interaction_type_and_data_model() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.lncrna_labels_by_interaction_type_and_data_model"]], "lncrna_labels_by_interaction_type_and_data_model_and_resource() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.lncrna_labels_by_interaction_type_and_data_model_and_resource"]], "lncrna_labels_by_reference() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.lncrna_labels_by_reference"]], "lncrna_labels_by_resource() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.lncrna_labels_by_resource"]], "lncrnas_by_data_model() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.lncrnas_by_data_model"]], "lncrnas_by_interaction_type() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.lncrnas_by_interaction_type"]], "lncrnas_by_interaction_type_and_data_model() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.lncrnas_by_interaction_type_and_data_model"]], "lncrnas_by_interaction_type_and_data_model_and_resource() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.lncrnas_by_interaction_type_and_data_model_and_resource"]], "lncrnas_by_reference() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.lncrnas_by_reference"]], "lncrnas_by_resource() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.lncrnas_by_resource"]], "majority_dir() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.majority_dir"]], "majority_sign() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.majority_sign"]], "merge() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.merge"]], "mirna_identifiers_by_data_model() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.mirna_identifiers_by_data_model"]], "mirna_identifiers_by_interaction_type() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.mirna_identifiers_by_interaction_type"]], "mirna_identifiers_by_interaction_type_and_data_model() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.mirna_identifiers_by_interaction_type_and_data_model"]], "mirna_identifiers_by_interaction_type_and_data_model_and_resource() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.mirna_identifiers_by_interaction_type_and_data_model_and_resource"]], "mirna_identifiers_by_reference() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.mirna_identifiers_by_reference"]], "mirna_identifiers_by_resource() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.mirna_identifiers_by_resource"]], "mirna_labels_by_data_model() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.mirna_labels_by_data_model"]], "mirna_labels_by_interaction_type() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.mirna_labels_by_interaction_type"]], "mirna_labels_by_interaction_type_and_data_model() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.mirna_labels_by_interaction_type_and_data_model"]], "mirna_labels_by_interaction_type_and_data_model_and_resource() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.mirna_labels_by_interaction_type_and_data_model_and_resource"]], "mirna_labels_by_reference() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.mirna_labels_by_reference"]], "mirna_labels_by_resource() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.mirna_labels_by_resource"]], "mirnas_by_data_model() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.mirnas_by_data_model"]], "mirnas_by_interaction_type() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.mirnas_by_interaction_type"]], "mirnas_by_interaction_type_and_data_model() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.mirnas_by_interaction_type_and_data_model"]], "mirnas_by_interaction_type_and_data_model_and_resource() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.mirnas_by_interaction_type_and_data_model_and_resource"]], "mirnas_by_reference() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.mirnas_by_reference"]], "mirnas_by_resource() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.mirnas_by_resource"]], "negative_a_b() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.negative_a_b"]], "negative_b_a() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.negative_b_a"]], "negative_resources_a_b() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.negative_resources_a_b"]], "negative_resources_b_a() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.negative_resources_b_a"]], "negative_reverse() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.negative_reverse"]], "negative_straight() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.negative_straight"]], "positive_a_b() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.positive_a_b"]], "positive_b_a() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.positive_b_a"]], "positive_resources_a_b() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.positive_resources_a_b"]], "positive_resources_b_a() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.positive_resources_b_a"]], "positive_reverse() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.positive_reverse"]], "positive_straight() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.positive_straight"]], "protein_identifiers_by_data_model() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.protein_identifiers_by_data_model"]], "protein_identifiers_by_interaction_type() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.protein_identifiers_by_interaction_type"]], "protein_identifiers_by_interaction_type_and_data_model() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.protein_identifiers_by_interaction_type_and_data_model"]], "protein_identifiers_by_interaction_type_and_data_model_and_resource() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.protein_identifiers_by_interaction_type_and_data_model_and_resource"]], "protein_identifiers_by_reference() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.protein_identifiers_by_reference"]], "protein_identifiers_by_resource() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.protein_identifiers_by_resource"]], "protein_labels_by_data_model() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.protein_labels_by_data_model"]], "protein_labels_by_interaction_type() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.protein_labels_by_interaction_type"]], "protein_labels_by_interaction_type_and_data_model() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.protein_labels_by_interaction_type_and_data_model"]], "protein_labels_by_interaction_type_and_data_model_and_resource() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.protein_labels_by_interaction_type_and_data_model_and_resource"]], "protein_labels_by_reference() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.protein_labels_by_reference"]], "protein_labels_by_resource() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.protein_labels_by_resource"]], "proteins_by_data_model() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.proteins_by_data_model"]], "proteins_by_interaction_type() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.proteins_by_interaction_type"]], "proteins_by_interaction_type_and_data_model() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.proteins_by_interaction_type_and_data_model"]], "proteins_by_interaction_type_and_data_model_and_resource() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.proteins_by_interaction_type_and_data_model_and_resource"]], "proteins_by_reference() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.proteins_by_reference"]], "proteins_by_resource() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.proteins_by_resource"]], "references_by_data_model (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.references_by_data_model"]], "references_by_interaction_type (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.references_by_interaction_type"]], "references_by_interaction_type_and_data_model (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.references_by_interaction_type_and_data_model"]], "references_by_interaction_type_and_data_model_and_resource (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.references_by_interaction_type_and_data_model_and_resource"]], "references_by_reference (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.references_by_reference"]], "references_by_resource (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.references_by_resource"]], "reload() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.reload"]], "resource_names_by_data_model (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.resource_names_by_data_model"]], "resource_names_by_interaction_type (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.resource_names_by_interaction_type"]], "resource_names_by_interaction_type_and_data_model (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.resource_names_by_interaction_type_and_data_model"]], "resource_names_by_interaction_type_and_data_model_and_resource (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.resource_names_by_interaction_type_and_data_model_and_resource"]], "resource_names_by_reference (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.resource_names_by_reference"]], "resource_names_by_resource (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.resource_names_by_resource"]], "resource_names_via_by_data_model (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.resource_names_via_by_data_model"]], "resource_names_via_by_interaction_type (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.resource_names_via_by_interaction_type"]], "resource_names_via_by_interaction_type_and_data_model (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.resource_names_via_by_interaction_type_and_data_model"]], "resource_names_via_by_interaction_type_and_data_model_and_resource (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.resource_names_via_by_interaction_type_and_data_model_and_resource"]], "resource_names_via_by_reference (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.resource_names_via_by_reference"]], "resource_names_via_by_resource (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.resource_names_via_by_resource"]], "resources_a_b() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.resources_a_b"]], "resources_b_a() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.resources_b_a"]], "resources_by_data_model (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.resources_by_data_model"]], "resources_by_interaction_type (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.resources_by_interaction_type"]], "resources_by_interaction_type_and_data_model (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.resources_by_interaction_type_and_data_model"]], "resources_by_interaction_type_and_data_model_and_resource (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.resources_by_interaction_type_and_data_model_and_resource"]], "resources_by_reference (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.resources_by_reference"]], "resources_by_resource (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.resources_by_resource"]], "resources_undirected() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.resources_undirected"]], "resources_via_by_data_model (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.resources_via_by_data_model"]], "resources_via_by_interaction_type (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.resources_via_by_interaction_type"]], "resources_via_by_interaction_type_and_data_model (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.resources_via_by_interaction_type_and_data_model"]], "resources_via_by_interaction_type_and_data_model_and_resource (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.resources_via_by_interaction_type_and_data_model_and_resource"]], "resources_via_by_reference (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.resources_via_by_reference"]], "resources_via_by_resource (pypath.core.interaction.interaction attribute)": [[135, "pypath.core.interaction.Interaction.resources_via_by_resource"]], "serialize() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.serialize"]], "serialize_attrs() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.serialize_attrs"]], "serialize_evidences() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.serialize_evidences"]], "small_molecule_identifiers_by_data_model() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.small_molecule_identifiers_by_data_model"]], "small_molecule_identifiers_by_interaction_type() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.small_molecule_identifiers_by_interaction_type"]], "small_molecule_identifiers_by_interaction_type_and_data_model() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.small_molecule_identifiers_by_interaction_type_and_data_model"]], "small_molecule_identifiers_by_interaction_type_and_data_model_and_resource() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.small_molecule_identifiers_by_interaction_type_and_data_model_and_resource"]], "small_molecule_identifiers_by_reference() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.small_molecule_identifiers_by_reference"]], "small_molecule_identifiers_by_resource() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.small_molecule_identifiers_by_resource"]], "small_molecule_labels_by_data_model() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.small_molecule_labels_by_data_model"]], "small_molecule_labels_by_interaction_type() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.small_molecule_labels_by_interaction_type"]], "small_molecule_labels_by_interaction_type_and_data_model() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.small_molecule_labels_by_interaction_type_and_data_model"]], "small_molecule_labels_by_interaction_type_and_data_model_and_resource() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.small_molecule_labels_by_interaction_type_and_data_model_and_resource"]], "small_molecule_labels_by_reference() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.small_molecule_labels_by_reference"]], "small_molecule_labels_by_resource() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.small_molecule_labels_by_resource"]], "small_molecules_by_data_model() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.small_molecules_by_data_model"]], "small_molecules_by_interaction_type() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.small_molecules_by_interaction_type"]], "small_molecules_by_interaction_type_and_data_model() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.small_molecules_by_interaction_type_and_data_model"]], "small_molecules_by_interaction_type_and_data_model_and_resource() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.small_molecules_by_interaction_type_and_data_model_and_resource"]], "small_molecules_by_reference() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.small_molecules_by_reference"]], "small_molecules_by_resource() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.small_molecules_by_resource"]], "source() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.source"]], "sources_reverse() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.sources_reverse"]], "sources_straight() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.sources_straight"]], "sources_undirected() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.sources_undirected"]], "src() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.src"]], "src_by_resource() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.src_by_resource"]], "target() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.target"]], "tgt() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.tgt"]], "tgt_by_resource() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.tgt_by_resource"]], "translate() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.translate"]], "unset_dir() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.unset_dir"]], "unset_direction() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.unset_direction"]], "unset_interaction_type() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.unset_interaction_type"]], "unset_sign() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.unset_sign"]], "update_attrs() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.update_attrs"]], "which_directions() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.which_directions"]], "which_dirs() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.which_dirs"]], "which_signs() (pypath.core.interaction.interaction method)": [[135, "pypath.core.interaction.Interaction.which_signs"]], "interactiondataframerecord (class in pypath.core.interaction)": [[136, "pypath.core.interaction.InteractionDataFrameRecord"]], "__init__() (pypath.core.interaction.interactiondataframerecord method)": [[136, "pypath.core.interaction.InteractionDataFrameRecord.__init__"]], "count() (pypath.core.interaction.interactiondataframerecord method)": [[136, "pypath.core.interaction.InteractionDataFrameRecord.count"]], "directed (pypath.core.interaction.interactiondataframerecord attribute)": [[136, "pypath.core.interaction.InteractionDataFrameRecord.directed"]], "dmodel (pypath.core.interaction.interactiondataframerecord attribute)": [[136, "pypath.core.interaction.InteractionDataFrameRecord.dmodel"]], "effect (pypath.core.interaction.interactiondataframerecord attribute)": [[136, "pypath.core.interaction.InteractionDataFrameRecord.effect"]], "id_a (pypath.core.interaction.interactiondataframerecord attribute)": [[136, "pypath.core.interaction.InteractionDataFrameRecord.id_a"]], "id_b (pypath.core.interaction.interactiondataframerecord attribute)": [[136, "pypath.core.interaction.InteractionDataFrameRecord.id_b"]], "index() (pypath.core.interaction.interactiondataframerecord method)": [[136, "pypath.core.interaction.InteractionDataFrameRecord.index"]], "references (pypath.core.interaction.interactiondataframerecord attribute)": [[136, "pypath.core.interaction.InteractionDataFrameRecord.references"]], "sources (pypath.core.interaction.interactiondataframerecord attribute)": [[136, "pypath.core.interaction.InteractionDataFrameRecord.sources"]], "type (pypath.core.interaction.interactiondataframerecord attribute)": [[136, "pypath.core.interaction.InteractionDataFrameRecord.type"]], "type_a (pypath.core.interaction.interactiondataframerecord attribute)": [[136, "pypath.core.interaction.InteractionDataFrameRecord.type_a"]], "type_b (pypath.core.interaction.interactiondataframerecord attribute)": [[136, "pypath.core.interaction.InteractionDataFrameRecord.type_b"]], "interactionkey (class in pypath.core.interaction)": [[137, "pypath.core.interaction.InteractionKey"]], "__init__() (pypath.core.interaction.interactionkey method)": [[137, "pypath.core.interaction.InteractionKey.__init__"]], "count() (pypath.core.interaction.interactionkey method)": [[137, "pypath.core.interaction.InteractionKey.count"]], "entity_a (pypath.core.interaction.interactionkey attribute)": [[137, "pypath.core.interaction.InteractionKey.entity_a"]], "entity_b (pypath.core.interaction.interactionkey attribute)": [[137, "pypath.core.interaction.InteractionKey.entity_b"]], "index() (pypath.core.interaction.interactionkey method)": [[137, "pypath.core.interaction.InteractionKey.index"]], "pypath.core.intercell": [[138, "module-pypath.core.intercell"]], "intercellannotation (class in pypath.core.intercell)": [[139, "pypath.core.intercell.IntercellAnnotation"]], "__init__() (pypath.core.intercell.intercellannotation method)": [[139, "pypath.core.intercell.IntercellAnnotation.__init__"]], "browse() (pypath.core.intercell.intercellannotation method)": [[139, "pypath.core.intercell.IntercellAnnotation.browse"]], "class_to_class_connections() (pypath.core.intercell.intercellannotation method)": [[139, "pypath.core.intercell.IntercellAnnotation.class_to_class_connections"]], "classes_by_entity() (pypath.core.intercell.intercellannotation method)": [[139, "pypath.core.intercell.IntercellAnnotation.classes_by_entity"]], "counts() (pypath.core.intercell.intercellannotation method)": [[139, "pypath.core.intercell.IntercellAnnotation.counts"]], "counts_by_class() (pypath.core.intercell.intercellannotation method)": [[139, "pypath.core.intercell.IntercellAnnotation.counts_by_class"]], "create_class() (pypath.core.intercell.intercellannotation method)": [[139, "pypath.core.intercell.IntercellAnnotation.create_class"]], "degree_inter_class_network() (pypath.core.intercell.intercellannotation method)": [[139, "pypath.core.intercell.IntercellAnnotation.degree_inter_class_network"]], "filter() (pypath.core.intercell.intercellannotation method)": [[139, "pypath.core.intercell.IntercellAnnotation.filter"]], "filter_classes() (pypath.core.intercell.intercellannotation static method)": [[139, "pypath.core.intercell.IntercellAnnotation.filter_classes"]], "filter_interclass_network() (pypath.core.intercell.intercellannotation method)": [[139, "pypath.core.intercell.IntercellAnnotation.filter_interclass_network"]], "get_class() (pypath.core.intercell.intercellannotation method)": [[139, "pypath.core.intercell.IntercellAnnotation.get_class"]], "get_df() (pypath.core.intercell.intercellannotation method)": [[139, "pypath.core.intercell.IntercellAnnotation.get_df"]], "get_interclass_network_df() (pypath.core.intercell.intercellannotation method)": [[139, "pypath.core.intercell.IntercellAnnotation.get_interclass_network_df"]], "get_parents() (pypath.core.intercell.intercellannotation method)": [[139, "pypath.core.intercell.IntercellAnnotation.get_parents"]], "get_resource() (pypath.core.intercell.intercellannotation method)": [[139, "pypath.core.intercell.IntercellAnnotation.get_resource"]], "get_resources() (pypath.core.intercell.intercellannotation method)": [[139, "pypath.core.intercell.IntercellAnnotation.get_resources"]], "labels() (pypath.core.intercell.intercellannotation method)": [[139, "pypath.core.intercell.IntercellAnnotation.labels"]], "make_df() (pypath.core.intercell.intercellannotation method)": [[139, "pypath.core.intercell.IntercellAnnotation.make_df"]], "network_df() (pypath.core.intercell.intercellannotation method)": [[139, "pypath.core.intercell.IntercellAnnotation.network_df"]], "populate_classes() (pypath.core.intercell.intercellannotation method)": [[139, "pypath.core.intercell.IntercellAnnotation.populate_classes"]], "populate_scores() (pypath.core.intercell.intercellannotation method)": [[139, "pypath.core.intercell.IntercellAnnotation.populate_scores"]], "process_annot() (pypath.core.intercell.intercellannotation method)": [[139, "pypath.core.intercell.IntercellAnnotation.process_annot"]], "quality_check_table() (pypath.core.intercell.intercellannotation method)": [[139, "pypath.core.intercell.IntercellAnnotation.quality_check_table"]], "register_network() (pypath.core.intercell.intercellannotation method)": [[139, "pypath.core.intercell.IntercellAnnotation.register_network"]], "reload() (pypath.core.intercell.intercellannotation method)": [[139, "pypath.core.intercell.IntercellAnnotation.reload"]], "resources_in_category() (pypath.core.intercell.intercellannotation method)": [[139, "pypath.core.intercell.IntercellAnnotation.resources_in_category"]], "select() (pypath.core.intercell.intercellannotation method)": [[139, "pypath.core.intercell.IntercellAnnotation.select"]], "set_interclass_network_df() (pypath.core.intercell.intercellannotation method)": [[139, "pypath.core.intercell.IntercellAnnotation.set_interclass_network_df"]], "show() (pypath.core.intercell.intercellannotation method)": [[139, "pypath.core.intercell.IntercellAnnotation.show"]], "update_parents() (pypath.core.intercell.intercellannotation method)": [[139, "pypath.core.intercell.IntercellAnnotation.update_parents"]], "get_db() (in module pypath.core.intercell)": [[140, "pypath.core.intercell.get_db"]], "init_db() (in module pypath.core.intercell)": [[141, "pypath.core.intercell.init_db"]], "pypath.core.intercell_annot": [[142, "module-pypath.core.intercell_annot"]], "excludes (in module pypath.core.intercell_annot)": [[143, "pypath.core.intercell_annot.excludes"]], "pypath.core.network": [[144, "module-pypath.core.network"]], "network (class in pypath.core.network)": [[145, "pypath.core.network.Network"]], "__init__() (pypath.core.network.network method)": [[145, "pypath.core.network.Network.__init__"]], "activated_by (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.activated_by"]], "activates (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.activates"]], "add_interaction() (pypath.core.network.network method)": [[145, "pypath.core.network.Network.add_interaction"]], "add_node() (pypath.core.network.network method)": [[145, "pypath.core.network.Network.add_node"]], "collect_complex_identifiers (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.collect_complex_identifiers"]], "collect_complex_labels (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.collect_complex_labels"]], "collect_complexes (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.collect_complexes"]], "collect_curation_effort (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.collect_curation_effort"]], "collect_data_models (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.collect_data_models"]], "collect_datasets (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.collect_datasets"]], "collect_degrees_directed (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.collect_degrees_directed"]], "collect_degrees_directed_in (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.collect_degrees_directed_in"]], "collect_degrees_directed_out (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.collect_degrees_directed_out"]], "collect_degrees_negative (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.collect_degrees_negative"]], "collect_degrees_negative_in (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.collect_degrees_negative_in"]], "collect_degrees_negative_out (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.collect_degrees_negative_out"]], "collect_degrees_non_directed (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.collect_degrees_non_directed"]], "collect_degrees_positive (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.collect_degrees_positive"]], "collect_degrees_positive_in (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.collect_degrees_positive_in"]], "collect_degrees_positive_out (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.collect_degrees_positive_out"]], "collect_degrees_signed (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.collect_degrees_signed"]], "collect_degrees_signed_in (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.collect_degrees_signed_in"]], "collect_degrees_signed_out (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.collect_degrees_signed_out"]], "collect_degrees_undirected (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.collect_degrees_undirected"]], "collect_entities (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.collect_entities"]], "collect_evidences (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.collect_evidences"]], "collect_identifiers (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.collect_identifiers"]], "collect_interaction_types (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.collect_interaction_types"]], "collect_interactions (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.collect_interactions"]], "collect_interactions_0 (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.collect_interactions_0"]], "collect_interactions_directed (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.collect_interactions_directed"]], "collect_interactions_mutual (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.collect_interactions_mutual"]], "collect_interactions_negative (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.collect_interactions_negative"]], "collect_interactions_non_directed (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.collect_interactions_non_directed"]], "collect_interactions_non_directed_0 (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.collect_interactions_non_directed_0"]], "collect_interactions_positive (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.collect_interactions_positive"]], "collect_interactions_signed (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.collect_interactions_signed"]], "collect_interactions_undirected (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.collect_interactions_undirected"]], "collect_interactions_undirected_0 (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.collect_interactions_undirected_0"]], "collect_labels (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.collect_labels"]], "collect_lncrna_identifiers (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.collect_lncrna_identifiers"]], "collect_lncrna_labels (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.collect_lncrna_labels"]], "collect_lncrnas (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.collect_lncrnas"]], "collect_mirna_identifiers (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.collect_mirna_identifiers"]], "collect_mirna_labels (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.collect_mirna_labels"]], "collect_mirnas (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.collect_mirnas"]], "collect_protein_identifiers (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.collect_protein_identifiers"]], "collect_protein_labels (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.collect_protein_labels"]], "collect_proteins (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.collect_proteins"]], "collect_references (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.collect_references"]], "collect_resource_names (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.collect_resource_names"]], "collect_resource_names_via (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.collect_resource_names_via"]], "collect_resources (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.collect_resources"]], "collect_resources_via (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.collect_resources_via"]], "collect_small_molecule_identifiers (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.collect_small_molecule_identifiers"]], "collect_small_molecule_labels (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.collect_small_molecule_labels"]], "collect_small_molecules (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.collect_small_molecules"]], "collectri() (pypath.core.network.network class method)": [[145, "pypath.core.network.Network.collectri"]], "complex_identifiers_by_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.complex_identifiers_by_data_model"]], "complex_identifiers_by_interaction_type (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.complex_identifiers_by_interaction_type"]], "complex_identifiers_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.complex_identifiers_by_interaction_type_and_data_model"]], "complex_identifiers_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.complex_identifiers_by_interaction_type_and_data_model_and_resource"]], "complex_identifiers_by_reference (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.complex_identifiers_by_reference"]], "complex_identifiers_by_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.complex_identifiers_by_resource"]], "complex_labels_by_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.complex_labels_by_data_model"]], "complex_labels_by_interaction_type (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.complex_labels_by_interaction_type"]], "complex_labels_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.complex_labels_by_interaction_type_and_data_model"]], "complex_labels_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.complex_labels_by_interaction_type_and_data_model_and_resource"]], "complex_labels_by_reference (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.complex_labels_by_reference"]], "complex_labels_by_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.complex_labels_by_resource"]], "complexes_by_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.complexes_by_data_model"]], "complexes_by_interaction_type (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.complexes_by_interaction_type"]], "complexes_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.complexes_by_interaction_type_and_data_model"]], "complexes_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.complexes_by_interaction_type_and_data_model_and_resource"]], "complexes_by_reference (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.complexes_by_reference"]], "complexes_by_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.complexes_by_resource"]], "count_activated_by (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_activated_by"]], "count_activates (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_activates"]], "count_complex_identifiers (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_complex_identifiers"]], "count_complex_identifiers_by_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_complex_identifiers_by_data_model"]], "count_complex_identifiers_by_interaction_type (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_complex_identifiers_by_interaction_type"]], "count_complex_identifiers_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_complex_identifiers_by_interaction_type_and_data_model"]], "count_complex_identifiers_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_complex_identifiers_by_interaction_type_and_data_model_and_resource"]], "count_complex_identifiers_by_reference (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_complex_identifiers_by_reference"]], "count_complex_identifiers_by_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_complex_identifiers_by_resource"]], "count_complex_labels (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_complex_labels"]], "count_complex_labels_by_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_complex_labels_by_data_model"]], "count_complex_labels_by_interaction_type (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_complex_labels_by_interaction_type"]], "count_complex_labels_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_complex_labels_by_interaction_type_and_data_model"]], "count_complex_labels_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_complex_labels_by_interaction_type_and_data_model_and_resource"]], "count_complex_labels_by_reference (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_complex_labels_by_reference"]], "count_complex_labels_by_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_complex_labels_by_resource"]], "count_complexes (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_complexes"]], "count_complexes_by_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_complexes_by_data_model"]], "count_complexes_by_interaction_type (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_complexes_by_interaction_type"]], "count_complexes_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_complexes_by_interaction_type_and_data_model"]], "count_complexes_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_complexes_by_interaction_type_and_data_model_and_resource"]], "count_complexes_by_reference (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_complexes_by_reference"]], "count_complexes_by_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_complexes_by_resource"]], "count_curation_effort (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_curation_effort"]], "count_curation_effort_by_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_curation_effort_by_data_model"]], "count_curation_effort_by_interaction_type (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_curation_effort_by_interaction_type"]], "count_curation_effort_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_curation_effort_by_interaction_type_and_data_model"]], "count_curation_effort_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_curation_effort_by_interaction_type_and_data_model_and_resource"]], "count_curation_effort_by_reference (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_curation_effort_by_reference"]], "count_curation_effort_by_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_curation_effort_by_resource"]], "count_data_models (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_data_models"]], "count_data_models_by_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_data_models_by_data_model"]], "count_data_models_by_interaction_type (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_data_models_by_interaction_type"]], "count_data_models_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_data_models_by_interaction_type_and_data_model"]], "count_data_models_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_data_models_by_interaction_type_and_data_model_and_resource"]], "count_data_models_by_reference (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_data_models_by_reference"]], "count_data_models_by_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_data_models_by_resource"]], "count_datasets (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_datasets"]], "count_datasets_by_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_datasets_by_data_model"]], "count_datasets_by_interaction_type (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_datasets_by_interaction_type"]], "count_datasets_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_datasets_by_interaction_type_and_data_model"]], "count_datasets_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_datasets_by_interaction_type_and_data_model_and_resource"]], "count_datasets_by_reference (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_datasets_by_reference"]], "count_datasets_by_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_datasets_by_resource"]], "count_degrees_directed (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_degrees_directed"]], "count_degrees_directed_by_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_degrees_directed_by_data_model"]], "count_degrees_directed_by_interaction_type (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_degrees_directed_by_interaction_type"]], "count_degrees_directed_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_degrees_directed_by_interaction_type_and_data_model"]], "count_degrees_directed_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_degrees_directed_by_interaction_type_and_data_model_and_resource"]], "count_degrees_directed_by_reference (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_degrees_directed_by_reference"]], "count_degrees_directed_by_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_degrees_directed_by_resource"]], "count_degrees_directed_in (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_degrees_directed_in"]], "count_degrees_directed_in_by_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_degrees_directed_in_by_data_model"]], "count_degrees_directed_in_by_interaction_type (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_degrees_directed_in_by_interaction_type"]], "count_degrees_directed_in_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_degrees_directed_in_by_interaction_type_and_data_model"]], "count_degrees_directed_in_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_degrees_directed_in_by_interaction_type_and_data_model_and_resource"]], "count_degrees_directed_in_by_reference (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_degrees_directed_in_by_reference"]], "count_degrees_directed_in_by_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_degrees_directed_in_by_resource"]], "count_degrees_directed_out (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_degrees_directed_out"]], "count_degrees_directed_out_by_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_degrees_directed_out_by_data_model"]], "count_degrees_directed_out_by_interaction_type (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_degrees_directed_out_by_interaction_type"]], "count_degrees_directed_out_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_degrees_directed_out_by_interaction_type_and_data_model"]], "count_degrees_directed_out_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_degrees_directed_out_by_interaction_type_and_data_model_and_resource"]], "count_degrees_directed_out_by_reference (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_degrees_directed_out_by_reference"]], "count_degrees_directed_out_by_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_degrees_directed_out_by_resource"]], "count_degrees_negative (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_degrees_negative"]], "count_degrees_negative_by_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_degrees_negative_by_data_model"]], "count_degrees_negative_by_interaction_type (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_degrees_negative_by_interaction_type"]], "count_degrees_negative_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_degrees_negative_by_interaction_type_and_data_model"]], "count_degrees_negative_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_degrees_negative_by_interaction_type_and_data_model_and_resource"]], "count_degrees_negative_by_reference (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_degrees_negative_by_reference"]], "count_degrees_negative_by_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_degrees_negative_by_resource"]], "count_degrees_negative_in (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_degrees_negative_in"]], "count_degrees_negative_in_by_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_degrees_negative_in_by_data_model"]], "count_degrees_negative_in_by_interaction_type (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_degrees_negative_in_by_interaction_type"]], "count_degrees_negative_in_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_degrees_negative_in_by_interaction_type_and_data_model"]], "count_degrees_negative_in_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_degrees_negative_in_by_interaction_type_and_data_model_and_resource"]], "count_degrees_negative_in_by_reference (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_degrees_negative_in_by_reference"]], "count_degrees_negative_in_by_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_degrees_negative_in_by_resource"]], "count_degrees_negative_out (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_degrees_negative_out"]], "count_degrees_negative_out_by_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_degrees_negative_out_by_data_model"]], "count_degrees_negative_out_by_interaction_type (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_degrees_negative_out_by_interaction_type"]], "count_degrees_negative_out_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_degrees_negative_out_by_interaction_type_and_data_model"]], "count_degrees_negative_out_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_degrees_negative_out_by_interaction_type_and_data_model_and_resource"]], "count_degrees_negative_out_by_reference (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_degrees_negative_out_by_reference"]], "count_degrees_negative_out_by_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_degrees_negative_out_by_resource"]], "count_degrees_non_directed (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_degrees_non_directed"]], "count_degrees_non_directed_by_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_degrees_non_directed_by_data_model"]], "count_degrees_non_directed_by_interaction_type (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_degrees_non_directed_by_interaction_type"]], "count_degrees_non_directed_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_degrees_non_directed_by_interaction_type_and_data_model"]], "count_degrees_non_directed_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_degrees_non_directed_by_interaction_type_and_data_model_and_resource"]], "count_degrees_non_directed_by_reference (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_degrees_non_directed_by_reference"]], "count_degrees_non_directed_by_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_degrees_non_directed_by_resource"]], "count_degrees_positive (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_degrees_positive"]], "count_degrees_positive_by_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_degrees_positive_by_data_model"]], "count_degrees_positive_by_interaction_type (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_degrees_positive_by_interaction_type"]], "count_degrees_positive_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_degrees_positive_by_interaction_type_and_data_model"]], "count_degrees_positive_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_degrees_positive_by_interaction_type_and_data_model_and_resource"]], "count_degrees_positive_by_reference (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_degrees_positive_by_reference"]], "count_degrees_positive_by_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_degrees_positive_by_resource"]], "count_degrees_positive_in (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_degrees_positive_in"]], "count_degrees_positive_in_by_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_degrees_positive_in_by_data_model"]], "count_degrees_positive_in_by_interaction_type (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_degrees_positive_in_by_interaction_type"]], "count_degrees_positive_in_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_degrees_positive_in_by_interaction_type_and_data_model"]], "count_degrees_positive_in_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_degrees_positive_in_by_interaction_type_and_data_model_and_resource"]], "count_degrees_positive_in_by_reference (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_degrees_positive_in_by_reference"]], "count_degrees_positive_in_by_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_degrees_positive_in_by_resource"]], "count_degrees_positive_out (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_degrees_positive_out"]], "count_degrees_positive_out_by_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_degrees_positive_out_by_data_model"]], "count_degrees_positive_out_by_interaction_type (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_degrees_positive_out_by_interaction_type"]], "count_degrees_positive_out_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_degrees_positive_out_by_interaction_type_and_data_model"]], "count_degrees_positive_out_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_degrees_positive_out_by_interaction_type_and_data_model_and_resource"]], "count_degrees_positive_out_by_reference (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_degrees_positive_out_by_reference"]], "count_degrees_positive_out_by_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_degrees_positive_out_by_resource"]], "count_degrees_signed (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_degrees_signed"]], "count_degrees_signed_by_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_degrees_signed_by_data_model"]], "count_degrees_signed_by_interaction_type (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_degrees_signed_by_interaction_type"]], "count_degrees_signed_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_degrees_signed_by_interaction_type_and_data_model"]], "count_degrees_signed_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_degrees_signed_by_interaction_type_and_data_model_and_resource"]], "count_degrees_signed_by_reference (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_degrees_signed_by_reference"]], "count_degrees_signed_by_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_degrees_signed_by_resource"]], "count_degrees_signed_in (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_degrees_signed_in"]], "count_degrees_signed_in_by_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_degrees_signed_in_by_data_model"]], "count_degrees_signed_in_by_interaction_type (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_degrees_signed_in_by_interaction_type"]], "count_degrees_signed_in_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_degrees_signed_in_by_interaction_type_and_data_model"]], "count_degrees_signed_in_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_degrees_signed_in_by_interaction_type_and_data_model_and_resource"]], "count_degrees_signed_in_by_reference (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_degrees_signed_in_by_reference"]], "count_degrees_signed_in_by_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_degrees_signed_in_by_resource"]], "count_degrees_signed_out (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_degrees_signed_out"]], "count_degrees_signed_out_by_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_degrees_signed_out_by_data_model"]], "count_degrees_signed_out_by_interaction_type (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_degrees_signed_out_by_interaction_type"]], "count_degrees_signed_out_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_degrees_signed_out_by_interaction_type_and_data_model"]], "count_degrees_signed_out_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_degrees_signed_out_by_interaction_type_and_data_model_and_resource"]], "count_degrees_signed_out_by_reference (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_degrees_signed_out_by_reference"]], "count_degrees_signed_out_by_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_degrees_signed_out_by_resource"]], "count_degrees_undirected (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_degrees_undirected"]], "count_degrees_undirected_by_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_degrees_undirected_by_data_model"]], "count_degrees_undirected_by_interaction_type (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_degrees_undirected_by_interaction_type"]], "count_degrees_undirected_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_degrees_undirected_by_interaction_type_and_data_model"]], "count_degrees_undirected_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_degrees_undirected_by_interaction_type_and_data_model_and_resource"]], "count_degrees_undirected_by_reference (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_degrees_undirected_by_reference"]], "count_degrees_undirected_by_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_degrees_undirected_by_resource"]], "count_entities (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_entities"]], "count_entities_by_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_entities_by_data_model"]], "count_entities_by_interaction_type (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_entities_by_interaction_type"]], "count_entities_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_entities_by_interaction_type_and_data_model"]], "count_entities_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_entities_by_interaction_type_and_data_model_and_resource"]], "count_entities_by_reference (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_entities_by_reference"]], "count_entities_by_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_entities_by_resource"]], "count_evidences (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_evidences"]], "count_evidences_by_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_evidences_by_data_model"]], "count_evidences_by_interaction_type (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_evidences_by_interaction_type"]], "count_evidences_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_evidences_by_interaction_type_and_data_model"]], "count_evidences_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_evidences_by_interaction_type_and_data_model_and_resource"]], "count_evidences_by_reference (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_evidences_by_reference"]], "count_evidences_by_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_evidences_by_resource"]], "count_identifiers (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_identifiers"]], "count_identifiers_by_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_identifiers_by_data_model"]], "count_identifiers_by_interaction_type (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_identifiers_by_interaction_type"]], "count_identifiers_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_identifiers_by_interaction_type_and_data_model"]], "count_identifiers_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_identifiers_by_interaction_type_and_data_model_and_resource"]], "count_identifiers_by_reference (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_identifiers_by_reference"]], "count_identifiers_by_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_identifiers_by_resource"]], "count_interaction_types (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_interaction_types"]], "count_interaction_types_by_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_interaction_types_by_data_model"]], "count_interaction_types_by_interaction_type (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_interaction_types_by_interaction_type"]], "count_interaction_types_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_interaction_types_by_interaction_type_and_data_model"]], "count_interaction_types_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_interaction_types_by_interaction_type_and_data_model_and_resource"]], "count_interaction_types_by_reference (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_interaction_types_by_reference"]], "count_interaction_types_by_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_interaction_types_by_resource"]], "count_interactions (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_interactions"]], "count_interactions_0 (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_interactions_0"]], "count_interactions_0_by_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_interactions_0_by_data_model"]], "count_interactions_0_by_interaction_type (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_interactions_0_by_interaction_type"]], "count_interactions_0_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_interactions_0_by_interaction_type_and_data_model"]], "count_interactions_0_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_interactions_0_by_interaction_type_and_data_model_and_resource"]], "count_interactions_0_by_reference (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_interactions_0_by_reference"]], "count_interactions_0_by_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_interactions_0_by_resource"]], "count_interactions_by_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_interactions_by_data_model"]], "count_interactions_by_interaction_type (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_interactions_by_interaction_type"]], "count_interactions_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_interactions_by_interaction_type_and_data_model"]], "count_interactions_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_interactions_by_interaction_type_and_data_model_and_resource"]], "count_interactions_by_reference (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_interactions_by_reference"]], "count_interactions_by_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_interactions_by_resource"]], "count_interactions_directed (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_interactions_directed"]], "count_interactions_directed_by_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_interactions_directed_by_data_model"]], "count_interactions_directed_by_interaction_type (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_interactions_directed_by_interaction_type"]], "count_interactions_directed_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_interactions_directed_by_interaction_type_and_data_model"]], "count_interactions_directed_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_interactions_directed_by_interaction_type_and_data_model_and_resource"]], "count_interactions_directed_by_reference (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_interactions_directed_by_reference"]], "count_interactions_directed_by_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_interactions_directed_by_resource"]], "count_interactions_mutual (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_interactions_mutual"]], "count_interactions_mutual_by_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_interactions_mutual_by_data_model"]], "count_interactions_mutual_by_interaction_type (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_interactions_mutual_by_interaction_type"]], "count_interactions_mutual_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_interactions_mutual_by_interaction_type_and_data_model"]], "count_interactions_mutual_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_interactions_mutual_by_interaction_type_and_data_model_and_resource"]], "count_interactions_mutual_by_reference (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_interactions_mutual_by_reference"]], "count_interactions_mutual_by_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_interactions_mutual_by_resource"]], "count_interactions_negative (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_interactions_negative"]], "count_interactions_negative_by_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_interactions_negative_by_data_model"]], "count_interactions_negative_by_interaction_type (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_interactions_negative_by_interaction_type"]], "count_interactions_negative_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_interactions_negative_by_interaction_type_and_data_model"]], "count_interactions_negative_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_interactions_negative_by_interaction_type_and_data_model_and_resource"]], "count_interactions_negative_by_reference (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_interactions_negative_by_reference"]], "count_interactions_negative_by_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_interactions_negative_by_resource"]], "count_interactions_non_directed (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_interactions_non_directed"]], "count_interactions_non_directed_0 (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_interactions_non_directed_0"]], "count_interactions_non_directed_0_by_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_interactions_non_directed_0_by_data_model"]], "count_interactions_non_directed_0_by_interaction_type (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_interactions_non_directed_0_by_interaction_type"]], "count_interactions_non_directed_0_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_interactions_non_directed_0_by_interaction_type_and_data_model"]], "count_interactions_non_directed_0_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_interactions_non_directed_0_by_interaction_type_and_data_model_and_resource"]], "count_interactions_non_directed_0_by_reference (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_interactions_non_directed_0_by_reference"]], "count_interactions_non_directed_0_by_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_interactions_non_directed_0_by_resource"]], "count_interactions_non_directed_by_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_interactions_non_directed_by_data_model"]], "count_interactions_non_directed_by_interaction_type (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_interactions_non_directed_by_interaction_type"]], "count_interactions_non_directed_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_interactions_non_directed_by_interaction_type_and_data_model"]], "count_interactions_non_directed_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_interactions_non_directed_by_interaction_type_and_data_model_and_resource"]], "count_interactions_non_directed_by_reference (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_interactions_non_directed_by_reference"]], "count_interactions_non_directed_by_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_interactions_non_directed_by_resource"]], "count_interactions_positive (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_interactions_positive"]], "count_interactions_positive_by_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_interactions_positive_by_data_model"]], "count_interactions_positive_by_interaction_type (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_interactions_positive_by_interaction_type"]], "count_interactions_positive_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_interactions_positive_by_interaction_type_and_data_model"]], "count_interactions_positive_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_interactions_positive_by_interaction_type_and_data_model_and_resource"]], "count_interactions_positive_by_reference (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_interactions_positive_by_reference"]], "count_interactions_positive_by_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_interactions_positive_by_resource"]], "count_interactions_signed (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_interactions_signed"]], "count_interactions_signed_by_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_interactions_signed_by_data_model"]], "count_interactions_signed_by_interaction_type (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_interactions_signed_by_interaction_type"]], "count_interactions_signed_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_interactions_signed_by_interaction_type_and_data_model"]], "count_interactions_signed_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_interactions_signed_by_interaction_type_and_data_model_and_resource"]], "count_interactions_signed_by_reference (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_interactions_signed_by_reference"]], "count_interactions_signed_by_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_interactions_signed_by_resource"]], "count_interactions_undirected (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_interactions_undirected"]], "count_interactions_undirected_0 (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_interactions_undirected_0"]], "count_interactions_undirected_0_by_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_interactions_undirected_0_by_data_model"]], "count_interactions_undirected_0_by_interaction_type (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_interactions_undirected_0_by_interaction_type"]], "count_interactions_undirected_0_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_interactions_undirected_0_by_interaction_type_and_data_model"]], "count_interactions_undirected_0_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_interactions_undirected_0_by_interaction_type_and_data_model_and_resource"]], "count_interactions_undirected_0_by_reference (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_interactions_undirected_0_by_reference"]], "count_interactions_undirected_0_by_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_interactions_undirected_0_by_resource"]], "count_interactions_undirected_by_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_interactions_undirected_by_data_model"]], "count_interactions_undirected_by_interaction_type (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_interactions_undirected_by_interaction_type"]], "count_interactions_undirected_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_interactions_undirected_by_interaction_type_and_data_model"]], "count_interactions_undirected_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_interactions_undirected_by_interaction_type_and_data_model_and_resource"]], "count_interactions_undirected_by_reference (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_interactions_undirected_by_reference"]], "count_interactions_undirected_by_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_interactions_undirected_by_resource"]], "count_labels (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_labels"]], "count_labels_by_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_labels_by_data_model"]], "count_labels_by_interaction_type (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_labels_by_interaction_type"]], "count_labels_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_labels_by_interaction_type_and_data_model"]], "count_labels_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_labels_by_interaction_type_and_data_model_and_resource"]], "count_labels_by_reference (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_labels_by_reference"]], "count_labels_by_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_labels_by_resource"]], "count_lncrna_identifiers (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_lncrna_identifiers"]], "count_lncrna_identifiers_by_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_lncrna_identifiers_by_data_model"]], "count_lncrna_identifiers_by_interaction_type (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_lncrna_identifiers_by_interaction_type"]], "count_lncrna_identifiers_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_lncrna_identifiers_by_interaction_type_and_data_model"]], "count_lncrna_identifiers_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_lncrna_identifiers_by_interaction_type_and_data_model_and_resource"]], "count_lncrna_identifiers_by_reference (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_lncrna_identifiers_by_reference"]], "count_lncrna_identifiers_by_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_lncrna_identifiers_by_resource"]], "count_lncrna_labels (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_lncrna_labels"]], "count_lncrna_labels_by_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_lncrna_labels_by_data_model"]], "count_lncrna_labels_by_interaction_type (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_lncrna_labels_by_interaction_type"]], "count_lncrna_labels_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_lncrna_labels_by_interaction_type_and_data_model"]], "count_lncrna_labels_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_lncrna_labels_by_interaction_type_and_data_model_and_resource"]], "count_lncrna_labels_by_reference (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_lncrna_labels_by_reference"]], "count_lncrna_labels_by_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_lncrna_labels_by_resource"]], "count_lncrnas (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_lncrnas"]], "count_lncrnas_by_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_lncrnas_by_data_model"]], "count_lncrnas_by_interaction_type (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_lncrnas_by_interaction_type"]], "count_lncrnas_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_lncrnas_by_interaction_type_and_data_model"]], "count_lncrnas_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_lncrnas_by_interaction_type_and_data_model_and_resource"]], "count_lncrnas_by_reference (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_lncrnas_by_reference"]], "count_lncrnas_by_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_lncrnas_by_resource"]], "count_mirna_identifiers (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_mirna_identifiers"]], "count_mirna_identifiers_by_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_mirna_identifiers_by_data_model"]], "count_mirna_identifiers_by_interaction_type (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_mirna_identifiers_by_interaction_type"]], "count_mirna_identifiers_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_mirna_identifiers_by_interaction_type_and_data_model"]], "count_mirna_identifiers_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_mirna_identifiers_by_interaction_type_and_data_model_and_resource"]], "count_mirna_identifiers_by_reference (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_mirna_identifiers_by_reference"]], "count_mirna_identifiers_by_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_mirna_identifiers_by_resource"]], "count_mirna_labels (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_mirna_labels"]], "count_mirna_labels_by_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_mirna_labels_by_data_model"]], "count_mirna_labels_by_interaction_type (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_mirna_labels_by_interaction_type"]], "count_mirna_labels_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_mirna_labels_by_interaction_type_and_data_model"]], "count_mirna_labels_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_mirna_labels_by_interaction_type_and_data_model_and_resource"]], "count_mirna_labels_by_reference (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_mirna_labels_by_reference"]], "count_mirna_labels_by_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_mirna_labels_by_resource"]], "count_mirnas (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_mirnas"]], "count_mirnas_by_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_mirnas_by_data_model"]], "count_mirnas_by_interaction_type (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_mirnas_by_interaction_type"]], "count_mirnas_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_mirnas_by_interaction_type_and_data_model"]], "count_mirnas_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_mirnas_by_interaction_type_and_data_model_and_resource"]], "count_mirnas_by_reference (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_mirnas_by_reference"]], "count_mirnas_by_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_mirnas_by_resource"]], "count_partners() (pypath.core.network.network method)": [[145, "pypath.core.network.Network.count_partners"]], "count_post_transcriptionally_activated_by (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_post_transcriptionally_activated_by"]], "count_post_transcriptionally_activates (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_post_transcriptionally_activates"]], "count_post_transcriptionally_regulated_by (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_post_transcriptionally_regulated_by"]], "count_post_transcriptionally_regulates (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_post_transcriptionally_regulates"]], "count_post_transcriptionally_suppressed_by (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_post_transcriptionally_suppressed_by"]], "count_post_transcriptionally_suppresses (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_post_transcriptionally_suppresses"]], "count_post_translationally_activated_by (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_post_translationally_activated_by"]], "count_post_translationally_activates (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_post_translationally_activates"]], "count_post_translationally_regulated_by (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_post_translationally_regulated_by"]], "count_post_translationally_regulates (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_post_translationally_regulates"]], "count_post_translationally_suppressed_by (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_post_translationally_suppressed_by"]], "count_post_translationally_suppresses (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_post_translationally_suppresses"]], "count_protein_identifiers (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_protein_identifiers"]], "count_protein_identifiers_by_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_protein_identifiers_by_data_model"]], "count_protein_identifiers_by_interaction_type (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_protein_identifiers_by_interaction_type"]], "count_protein_identifiers_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_protein_identifiers_by_interaction_type_and_data_model"]], "count_protein_identifiers_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_protein_identifiers_by_interaction_type_and_data_model_and_resource"]], "count_protein_identifiers_by_reference (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_protein_identifiers_by_reference"]], "count_protein_identifiers_by_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_protein_identifiers_by_resource"]], "count_protein_labels (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_protein_labels"]], "count_protein_labels_by_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_protein_labels_by_data_model"]], "count_protein_labels_by_interaction_type (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_protein_labels_by_interaction_type"]], "count_protein_labels_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_protein_labels_by_interaction_type_and_data_model"]], "count_protein_labels_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_protein_labels_by_interaction_type_and_data_model_and_resource"]], "count_protein_labels_by_reference (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_protein_labels_by_reference"]], "count_protein_labels_by_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_protein_labels_by_resource"]], "count_proteins (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_proteins"]], "count_proteins_by_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_proteins_by_data_model"]], "count_proteins_by_interaction_type (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_proteins_by_interaction_type"]], "count_proteins_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_proteins_by_interaction_type_and_data_model"]], "count_proteins_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_proteins_by_interaction_type_and_data_model_and_resource"]], "count_proteins_by_reference (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_proteins_by_reference"]], "count_proteins_by_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_proteins_by_resource"]], "count_references (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_references"]], "count_references_by_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_references_by_data_model"]], "count_references_by_interaction_type (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_references_by_interaction_type"]], "count_references_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_references_by_interaction_type_and_data_model"]], "count_references_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_references_by_interaction_type_and_data_model_and_resource"]], "count_references_by_reference (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_references_by_reference"]], "count_references_by_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_references_by_resource"]], "count_regulated_by (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_regulated_by"]], "count_regulates (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_regulates"]], "count_resource_names (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_resource_names"]], "count_resource_names_by_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_resource_names_by_data_model"]], "count_resource_names_by_interaction_type (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_resource_names_by_interaction_type"]], "count_resource_names_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_resource_names_by_interaction_type_and_data_model"]], "count_resource_names_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_resource_names_by_interaction_type_and_data_model_and_resource"]], "count_resource_names_by_reference (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_resource_names_by_reference"]], "count_resource_names_by_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_resource_names_by_resource"]], "count_resource_names_via (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_resource_names_via"]], "count_resource_names_via_by_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_resource_names_via_by_data_model"]], "count_resource_names_via_by_interaction_type (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_resource_names_via_by_interaction_type"]], "count_resource_names_via_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_resource_names_via_by_interaction_type_and_data_model"]], "count_resource_names_via_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_resource_names_via_by_interaction_type_and_data_model_and_resource"]], "count_resource_names_via_by_reference (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_resource_names_via_by_reference"]], "count_resource_names_via_by_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_resource_names_via_by_resource"]], "count_resources (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_resources"]], "count_resources_by_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_resources_by_data_model"]], "count_resources_by_interaction_type (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_resources_by_interaction_type"]], "count_resources_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_resources_by_interaction_type_and_data_model"]], "count_resources_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_resources_by_interaction_type_and_data_model_and_resource"]], "count_resources_by_reference (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_resources_by_reference"]], "count_resources_by_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_resources_by_resource"]], "count_resources_via (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_resources_via"]], "count_resources_via_by_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_resources_via_by_data_model"]], "count_resources_via_by_interaction_type (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_resources_via_by_interaction_type"]], "count_resources_via_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_resources_via_by_interaction_type_and_data_model"]], "count_resources_via_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_resources_via_by_interaction_type_and_data_model_and_resource"]], "count_resources_via_by_reference (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_resources_via_by_reference"]], "count_resources_via_by_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_resources_via_by_resource"]], "count_small_molecule_identifiers (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_small_molecule_identifiers"]], "count_small_molecule_identifiers_by_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_small_molecule_identifiers_by_data_model"]], "count_small_molecule_identifiers_by_interaction_type (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_small_molecule_identifiers_by_interaction_type"]], "count_small_molecule_identifiers_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_small_molecule_identifiers_by_interaction_type_and_data_model"]], "count_small_molecule_identifiers_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_small_molecule_identifiers_by_interaction_type_and_data_model_and_resource"]], "count_small_molecule_identifiers_by_reference (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_small_molecule_identifiers_by_reference"]], "count_small_molecule_identifiers_by_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_small_molecule_identifiers_by_resource"]], "count_small_molecule_labels (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_small_molecule_labels"]], "count_small_molecule_labels_by_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_small_molecule_labels_by_data_model"]], "count_small_molecule_labels_by_interaction_type (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_small_molecule_labels_by_interaction_type"]], "count_small_molecule_labels_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_small_molecule_labels_by_interaction_type_and_data_model"]], "count_small_molecule_labels_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_small_molecule_labels_by_interaction_type_and_data_model_and_resource"]], "count_small_molecule_labels_by_reference (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_small_molecule_labels_by_reference"]], "count_small_molecule_labels_by_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_small_molecule_labels_by_resource"]], "count_small_molecules (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_small_molecules"]], "count_small_molecules_by_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_small_molecules_by_data_model"]], "count_small_molecules_by_interaction_type (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_small_molecules_by_interaction_type"]], "count_small_molecules_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_small_molecules_by_interaction_type_and_data_model"]], "count_small_molecules_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_small_molecules_by_interaction_type_and_data_model_and_resource"]], "count_small_molecules_by_reference (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_small_molecules_by_reference"]], "count_small_molecules_by_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_small_molecules_by_resource"]], "count_suppressed_by (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_suppressed_by"]], "count_suppresses (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_suppresses"]], "count_transcriptionally_activated_by (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_transcriptionally_activated_by"]], "count_transcriptionally_activates (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_transcriptionally_activates"]], "count_transcriptionally_regulated_by (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_transcriptionally_regulated_by"]], "count_transcriptionally_regulates (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_transcriptionally_regulates"]], "count_transcriptionally_suppressed_by (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_transcriptionally_suppressed_by"]], "count_transcriptionally_suppresses (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.count_transcriptionally_suppresses"]], "curation_effort_by_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.curation_effort_by_data_model"]], "curation_effort_by_interaction_type (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.curation_effort_by_interaction_type"]], "curation_effort_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.curation_effort_by_interaction_type_and_data_model"]], "curation_effort_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.curation_effort_by_interaction_type_and_data_model_and_resource"]], "curation_effort_by_reference (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.curation_effort_by_reference"]], "curation_effort_by_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.curation_effort_by_resource"]], "data_models_by_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.data_models_by_data_model"]], "data_models_by_interaction_type (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.data_models_by_interaction_type"]], "data_models_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.data_models_by_interaction_type_and_data_model"]], "data_models_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.data_models_by_interaction_type_and_data_model_and_resource"]], "data_models_by_reference (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.data_models_by_reference"]], "data_models_by_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.data_models_by_resource"]], "datasets_by_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.datasets_by_data_model"]], "datasets_by_interaction_type (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.datasets_by_interaction_type"]], "datasets_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.datasets_by_interaction_type_and_data_model"]], "datasets_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.datasets_by_interaction_type_and_data_model_and_resource"]], "datasets_by_reference (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.datasets_by_reference"]], "datasets_by_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.datasets_by_resource"]], "degrees_directed_by_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.degrees_directed_by_data_model"]], "degrees_directed_by_interaction_type (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.degrees_directed_by_interaction_type"]], "degrees_directed_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.degrees_directed_by_interaction_type_and_data_model"]], "degrees_directed_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.degrees_directed_by_interaction_type_and_data_model_and_resource"]], "degrees_directed_by_reference (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.degrees_directed_by_reference"]], "degrees_directed_by_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.degrees_directed_by_resource"]], "degrees_directed_in_by_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.degrees_directed_in_by_data_model"]], "degrees_directed_in_by_interaction_type (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.degrees_directed_in_by_interaction_type"]], "degrees_directed_in_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.degrees_directed_in_by_interaction_type_and_data_model"]], "degrees_directed_in_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.degrees_directed_in_by_interaction_type_and_data_model_and_resource"]], "degrees_directed_in_by_reference (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.degrees_directed_in_by_reference"]], "degrees_directed_in_by_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.degrees_directed_in_by_resource"]], "degrees_directed_out_by_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.degrees_directed_out_by_data_model"]], "degrees_directed_out_by_interaction_type (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.degrees_directed_out_by_interaction_type"]], "degrees_directed_out_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.degrees_directed_out_by_interaction_type_and_data_model"]], "degrees_directed_out_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.degrees_directed_out_by_interaction_type_and_data_model_and_resource"]], "degrees_directed_out_by_reference (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.degrees_directed_out_by_reference"]], "degrees_directed_out_by_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.degrees_directed_out_by_resource"]], "degrees_negative_by_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.degrees_negative_by_data_model"]], "degrees_negative_by_interaction_type (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.degrees_negative_by_interaction_type"]], "degrees_negative_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.degrees_negative_by_interaction_type_and_data_model"]], "degrees_negative_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.degrees_negative_by_interaction_type_and_data_model_and_resource"]], "degrees_negative_by_reference (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.degrees_negative_by_reference"]], "degrees_negative_by_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.degrees_negative_by_resource"]], "degrees_negative_in_by_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.degrees_negative_in_by_data_model"]], "degrees_negative_in_by_interaction_type (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.degrees_negative_in_by_interaction_type"]], "degrees_negative_in_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.degrees_negative_in_by_interaction_type_and_data_model"]], "degrees_negative_in_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.degrees_negative_in_by_interaction_type_and_data_model_and_resource"]], "degrees_negative_in_by_reference (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.degrees_negative_in_by_reference"]], "degrees_negative_in_by_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.degrees_negative_in_by_resource"]], "degrees_negative_out_by_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.degrees_negative_out_by_data_model"]], "degrees_negative_out_by_interaction_type (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.degrees_negative_out_by_interaction_type"]], "degrees_negative_out_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.degrees_negative_out_by_interaction_type_and_data_model"]], "degrees_negative_out_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.degrees_negative_out_by_interaction_type_and_data_model_and_resource"]], "degrees_negative_out_by_reference (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.degrees_negative_out_by_reference"]], "degrees_negative_out_by_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.degrees_negative_out_by_resource"]], "degrees_non_directed_by_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.degrees_non_directed_by_data_model"]], "degrees_non_directed_by_interaction_type (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.degrees_non_directed_by_interaction_type"]], "degrees_non_directed_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.degrees_non_directed_by_interaction_type_and_data_model"]], "degrees_non_directed_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.degrees_non_directed_by_interaction_type_and_data_model_and_resource"]], "degrees_non_directed_by_reference (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.degrees_non_directed_by_reference"]], "degrees_non_directed_by_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.degrees_non_directed_by_resource"]], "degrees_positive_by_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.degrees_positive_by_data_model"]], "degrees_positive_by_interaction_type (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.degrees_positive_by_interaction_type"]], "degrees_positive_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.degrees_positive_by_interaction_type_and_data_model"]], "degrees_positive_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.degrees_positive_by_interaction_type_and_data_model_and_resource"]], "degrees_positive_by_reference (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.degrees_positive_by_reference"]], "degrees_positive_by_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.degrees_positive_by_resource"]], "degrees_positive_in_by_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.degrees_positive_in_by_data_model"]], "degrees_positive_in_by_interaction_type (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.degrees_positive_in_by_interaction_type"]], "degrees_positive_in_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.degrees_positive_in_by_interaction_type_and_data_model"]], "degrees_positive_in_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.degrees_positive_in_by_interaction_type_and_data_model_and_resource"]], "degrees_positive_in_by_reference (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.degrees_positive_in_by_reference"]], "degrees_positive_in_by_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.degrees_positive_in_by_resource"]], "degrees_positive_out_by_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.degrees_positive_out_by_data_model"]], "degrees_positive_out_by_interaction_type (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.degrees_positive_out_by_interaction_type"]], "degrees_positive_out_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.degrees_positive_out_by_interaction_type_and_data_model"]], "degrees_positive_out_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.degrees_positive_out_by_interaction_type_and_data_model_and_resource"]], "degrees_positive_out_by_reference (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.degrees_positive_out_by_reference"]], "degrees_positive_out_by_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.degrees_positive_out_by_resource"]], "degrees_signed_by_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.degrees_signed_by_data_model"]], "degrees_signed_by_interaction_type (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.degrees_signed_by_interaction_type"]], "degrees_signed_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.degrees_signed_by_interaction_type_and_data_model"]], "degrees_signed_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.degrees_signed_by_interaction_type_and_data_model_and_resource"]], "degrees_signed_by_reference (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.degrees_signed_by_reference"]], "degrees_signed_by_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.degrees_signed_by_resource"]], "degrees_signed_in_by_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.degrees_signed_in_by_data_model"]], "degrees_signed_in_by_interaction_type (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.degrees_signed_in_by_interaction_type"]], "degrees_signed_in_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.degrees_signed_in_by_interaction_type_and_data_model"]], "degrees_signed_in_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.degrees_signed_in_by_interaction_type_and_data_model_and_resource"]], "degrees_signed_in_by_reference (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.degrees_signed_in_by_reference"]], "degrees_signed_in_by_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.degrees_signed_in_by_resource"]], "degrees_signed_out_by_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.degrees_signed_out_by_data_model"]], "degrees_signed_out_by_interaction_type (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.degrees_signed_out_by_interaction_type"]], "degrees_signed_out_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.degrees_signed_out_by_interaction_type_and_data_model"]], "degrees_signed_out_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.degrees_signed_out_by_interaction_type_and_data_model_and_resource"]], "degrees_signed_out_by_reference (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.degrees_signed_out_by_reference"]], "degrees_signed_out_by_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.degrees_signed_out_by_resource"]], "degrees_undirected_by_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.degrees_undirected_by_data_model"]], "degrees_undirected_by_interaction_type (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.degrees_undirected_by_interaction_type"]], "degrees_undirected_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.degrees_undirected_by_interaction_type_and_data_model"]], "degrees_undirected_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.degrees_undirected_by_interaction_type_and_data_model_and_resource"]], "degrees_undirected_by_reference (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.degrees_undirected_by_reference"]], "degrees_undirected_by_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.degrees_undirected_by_resource"]], "direction_consistency() (pypath.core.network.network method)": [[145, "pypath.core.network.Network.direction_consistency"]], "dorothea() (pypath.core.network.network class method)": [[145, "pypath.core.network.Network.dorothea"]], "entities_by_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.entities_by_data_model"]], "entities_by_interaction_type (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.entities_by_interaction_type"]], "entities_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.entities_by_interaction_type_and_data_model"]], "entities_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.entities_by_interaction_type_and_data_model_and_resource"]], "entities_by_reference (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.entities_by_reference"]], "entities_by_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.entities_by_resource"]], "entity_by_id() (pypath.core.network.network method)": [[145, "pypath.core.network.Network.entity_by_id"]], "entity_by_label() (pypath.core.network.network method)": [[145, "pypath.core.network.Network.entity_by_label"]], "evidences_by_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.evidences_by_data_model"]], "evidences_by_interaction_type (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.evidences_by_interaction_type"]], "evidences_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.evidences_by_interaction_type_and_data_model"]], "evidences_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.evidences_by_interaction_type_and_data_model_and_resource"]], "evidences_by_reference (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.evidences_by_reference"]], "evidences_by_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.evidences_by_resource"]], "extra_directions() (pypath.core.network.network method)": [[145, "pypath.core.network.Network.extra_directions"]], "find_paths() (pypath.core.network.network method)": [[145, "pypath.core.network.Network.find_paths"]], "from_igraph() (pypath.core.network.network class method)": [[145, "pypath.core.network.Network.from_igraph"]], "from_pickle() (pypath.core.network.network class method)": [[145, "pypath.core.network.Network.from_pickle"]], "get_complex_identifiers (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.get_complex_identifiers"]], "get_complex_labels (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.get_complex_labels"]], "get_complexes (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.get_complexes"]], "get_curation_effort (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.get_curation_effort"]], "get_data_models (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.get_data_models"]], "get_datasets (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.get_datasets"]], "get_degrees_directed (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.get_degrees_directed"]], "get_degrees_directed_in (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.get_degrees_directed_in"]], "get_degrees_directed_out (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.get_degrees_directed_out"]], "get_degrees_negative (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.get_degrees_negative"]], "get_degrees_negative_in (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.get_degrees_negative_in"]], "get_degrees_negative_out (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.get_degrees_negative_out"]], "get_degrees_non_directed (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.get_degrees_non_directed"]], "get_degrees_positive (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.get_degrees_positive"]], "get_degrees_positive_in (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.get_degrees_positive_in"]], "get_degrees_positive_out (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.get_degrees_positive_out"]], "get_degrees_signed (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.get_degrees_signed"]], "get_degrees_signed_in (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.get_degrees_signed_in"]], "get_degrees_signed_out (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.get_degrees_signed_out"]], "get_degrees_undirected (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.get_degrees_undirected"]], "get_entities (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.get_entities"]], "get_evidences (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.get_evidences"]], "get_identifiers (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.get_identifiers"]], "get_interaction_types (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.get_interaction_types"]], "get_interactions (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.get_interactions"]], "get_interactions_0 (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.get_interactions_0"]], "get_interactions_directed (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.get_interactions_directed"]], "get_interactions_mutual (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.get_interactions_mutual"]], "get_interactions_negative (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.get_interactions_negative"]], "get_interactions_non_directed (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.get_interactions_non_directed"]], "get_interactions_non_directed_0 (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.get_interactions_non_directed_0"]], "get_interactions_positive (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.get_interactions_positive"]], "get_interactions_signed (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.get_interactions_signed"]], "get_interactions_undirected (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.get_interactions_undirected"]], "get_interactions_undirected_0 (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.get_interactions_undirected_0"]], "get_labels (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.get_labels"]], "get_lncrna_identifiers (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.get_lncrna_identifiers"]], "get_lncrna_labels (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.get_lncrna_labels"]], "get_lncrnas (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.get_lncrnas"]], "get_mirna_identifiers (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.get_mirna_identifiers"]], "get_mirna_labels (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.get_mirna_labels"]], "get_mirnas (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.get_mirnas"]], "get_organisms() (pypath.core.network.network method)": [[145, "pypath.core.network.Network.get_organisms"]], "get_protein_identifiers (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.get_protein_identifiers"]], "get_protein_labels (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.get_protein_labels"]], "get_proteins (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.get_proteins"]], "get_references (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.get_references"]], "get_resource_names (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.get_resource_names"]], "get_resource_names_via (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.get_resource_names_via"]], "get_resources (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.get_resources"]], "get_resources_via (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.get_resources_via"]], "get_small_molecule_identifiers (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.get_small_molecule_identifiers"]], "get_small_molecule_labels (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.get_small_molecule_labels"]], "get_small_molecules (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.get_small_molecules"]], "htp_interactions() (pypath.core.network.network method)": [[145, "pypath.core.network.Network.htp_interactions"]], "htp_references() (pypath.core.network.network method)": [[145, "pypath.core.network.Network.htp_references"]], "identifiers_by_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.identifiers_by_data_model"]], "identifiers_by_interaction_type (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.identifiers_by_interaction_type"]], "identifiers_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.identifiers_by_interaction_type_and_data_model"]], "identifiers_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.identifiers_by_interaction_type_and_data_model_and_resource"]], "identifiers_by_reference (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.identifiers_by_reference"]], "identifiers_by_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.identifiers_by_resource"]], "init_network() (pypath.core.network.network method)": [[145, "pypath.core.network.Network.init_network"]], "interaction() (pypath.core.network.network method)": [[145, "pypath.core.network.Network.interaction"]], "interaction_by_id() (pypath.core.network.network method)": [[145, "pypath.core.network.Network.interaction_by_id"]], "interaction_by_label() (pypath.core.network.network method)": [[145, "pypath.core.network.Network.interaction_by_label"]], "interaction_types_by_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.interaction_types_by_data_model"]], "interaction_types_by_interaction_type (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.interaction_types_by_interaction_type"]], "interaction_types_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.interaction_types_by_interaction_type_and_data_model"]], "interaction_types_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.interaction_types_by_interaction_type_and_data_model_and_resource"]], "interaction_types_by_reference (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.interaction_types_by_reference"]], "interaction_types_by_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.interaction_types_by_resource"]], "interactions_0_by_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.interactions_0_by_data_model"]], "interactions_0_by_interaction_type (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.interactions_0_by_interaction_type"]], "interactions_0_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.interactions_0_by_interaction_type_and_data_model"]], "interactions_0_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.interactions_0_by_interaction_type_and_data_model_and_resource"]], "interactions_0_by_reference (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.interactions_0_by_reference"]], "interactions_0_by_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.interactions_0_by_resource"]], "interactions_by_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.interactions_by_data_model"]], "interactions_by_interaction_type (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.interactions_by_interaction_type"]], "interactions_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.interactions_by_interaction_type_and_data_model"]], "interactions_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.interactions_by_interaction_type_and_data_model_and_resource"]], "interactions_by_reference (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.interactions_by_reference"]], "interactions_by_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.interactions_by_resource"]], "interactions_directed_by_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.interactions_directed_by_data_model"]], "interactions_directed_by_interaction_type (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.interactions_directed_by_interaction_type"]], "interactions_directed_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.interactions_directed_by_interaction_type_and_data_model"]], "interactions_directed_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.interactions_directed_by_interaction_type_and_data_model_and_resource"]], "interactions_directed_by_reference (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.interactions_directed_by_reference"]], "interactions_directed_by_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.interactions_directed_by_resource"]], "interactions_mutual_by_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.interactions_mutual_by_data_model"]], "interactions_mutual_by_interaction_type (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.interactions_mutual_by_interaction_type"]], "interactions_mutual_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.interactions_mutual_by_interaction_type_and_data_model"]], "interactions_mutual_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.interactions_mutual_by_interaction_type_and_data_model_and_resource"]], "interactions_mutual_by_reference (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.interactions_mutual_by_reference"]], "interactions_mutual_by_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.interactions_mutual_by_resource"]], "interactions_negative_by_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.interactions_negative_by_data_model"]], "interactions_negative_by_interaction_type (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.interactions_negative_by_interaction_type"]], "interactions_negative_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.interactions_negative_by_interaction_type_and_data_model"]], "interactions_negative_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.interactions_negative_by_interaction_type_and_data_model_and_resource"]], "interactions_negative_by_reference (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.interactions_negative_by_reference"]], "interactions_negative_by_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.interactions_negative_by_resource"]], "interactions_non_directed_0_by_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.interactions_non_directed_0_by_data_model"]], "interactions_non_directed_0_by_interaction_type (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.interactions_non_directed_0_by_interaction_type"]], "interactions_non_directed_0_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.interactions_non_directed_0_by_interaction_type_and_data_model"]], "interactions_non_directed_0_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.interactions_non_directed_0_by_interaction_type_and_data_model_and_resource"]], "interactions_non_directed_0_by_reference (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.interactions_non_directed_0_by_reference"]], "interactions_non_directed_0_by_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.interactions_non_directed_0_by_resource"]], "interactions_non_directed_by_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.interactions_non_directed_by_data_model"]], "interactions_non_directed_by_interaction_type (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.interactions_non_directed_by_interaction_type"]], "interactions_non_directed_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.interactions_non_directed_by_interaction_type_and_data_model"]], "interactions_non_directed_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.interactions_non_directed_by_interaction_type_and_data_model_and_resource"]], "interactions_non_directed_by_reference (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.interactions_non_directed_by_reference"]], "interactions_non_directed_by_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.interactions_non_directed_by_resource"]], "interactions_positive_by_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.interactions_positive_by_data_model"]], "interactions_positive_by_interaction_type (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.interactions_positive_by_interaction_type"]], "interactions_positive_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.interactions_positive_by_interaction_type_and_data_model"]], "interactions_positive_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.interactions_positive_by_interaction_type_and_data_model_and_resource"]], "interactions_positive_by_reference (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.interactions_positive_by_reference"]], "interactions_positive_by_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.interactions_positive_by_resource"]], "interactions_signed_by_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.interactions_signed_by_data_model"]], "interactions_signed_by_interaction_type (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.interactions_signed_by_interaction_type"]], "interactions_signed_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.interactions_signed_by_interaction_type_and_data_model"]], "interactions_signed_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.interactions_signed_by_interaction_type_and_data_model_and_resource"]], "interactions_signed_by_reference (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.interactions_signed_by_reference"]], "interactions_signed_by_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.interactions_signed_by_resource"]], "interactions_undirected_0_by_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.interactions_undirected_0_by_data_model"]], "interactions_undirected_0_by_interaction_type (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.interactions_undirected_0_by_interaction_type"]], "interactions_undirected_0_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.interactions_undirected_0_by_interaction_type_and_data_model"]], "interactions_undirected_0_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.interactions_undirected_0_by_interaction_type_and_data_model_and_resource"]], "interactions_undirected_0_by_reference (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.interactions_undirected_0_by_reference"]], "interactions_undirected_0_by_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.interactions_undirected_0_by_resource"]], "interactions_undirected_by_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.interactions_undirected_by_data_model"]], "interactions_undirected_by_interaction_type (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.interactions_undirected_by_interaction_type"]], "interactions_undirected_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.interactions_undirected_by_interaction_type_and_data_model"]], "interactions_undirected_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.interactions_undirected_by_interaction_type_and_data_model_and_resource"]], "interactions_undirected_by_reference (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.interactions_undirected_by_reference"]], "interactions_undirected_by_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.interactions_undirected_by_resource"]], "labels_by_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.labels_by_data_model"]], "labels_by_interaction_type (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.labels_by_interaction_type"]], "labels_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.labels_by_interaction_type_and_data_model"]], "labels_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.labels_by_interaction_type_and_data_model_and_resource"]], "labels_by_reference (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.labels_by_reference"]], "labels_by_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.labels_by_resource"]], "lncrna_identifiers_by_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.lncrna_identifiers_by_data_model"]], "lncrna_identifiers_by_interaction_type (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.lncrna_identifiers_by_interaction_type"]], "lncrna_identifiers_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.lncrna_identifiers_by_interaction_type_and_data_model"]], "lncrna_identifiers_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.lncrna_identifiers_by_interaction_type_and_data_model_and_resource"]], "lncrna_identifiers_by_reference (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.lncrna_identifiers_by_reference"]], "lncrna_identifiers_by_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.lncrna_identifiers_by_resource"]], "lncrna_labels_by_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.lncrna_labels_by_data_model"]], "lncrna_labels_by_interaction_type (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.lncrna_labels_by_interaction_type"]], "lncrna_labels_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.lncrna_labels_by_interaction_type_and_data_model"]], "lncrna_labels_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.lncrna_labels_by_interaction_type_and_data_model_and_resource"]], "lncrna_labels_by_reference (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.lncrna_labels_by_reference"]], "lncrna_labels_by_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.lncrna_labels_by_resource"]], "lncrnas_by_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.lncrnas_by_data_model"]], "lncrnas_by_interaction_type (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.lncrnas_by_interaction_type"]], "lncrnas_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.lncrnas_by_interaction_type_and_data_model"]], "lncrnas_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.lncrnas_by_interaction_type_and_data_model_and_resource"]], "lncrnas_by_reference (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.lncrnas_by_reference"]], "lncrnas_by_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.lncrnas_by_resource"]], "load() (pypath.core.network.network method)": [[145, "pypath.core.network.Network.load"]], "load_from_pickle() (pypath.core.network.network method)": [[145, "pypath.core.network.Network.load_from_pickle"]], "load_resource() (pypath.core.network.network method)": [[145, "pypath.core.network.Network.load_resource"]], "load_resources() (pypath.core.network.network method)": [[145, "pypath.core.network.Network.load_resources"]], "make_df() (pypath.core.network.network method)": [[145, "pypath.core.network.Network.make_df"]], "mirna_identifiers_by_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.mirna_identifiers_by_data_model"]], "mirna_identifiers_by_interaction_type (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.mirna_identifiers_by_interaction_type"]], "mirna_identifiers_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.mirna_identifiers_by_interaction_type_and_data_model"]], "mirna_identifiers_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.mirna_identifiers_by_interaction_type_and_data_model_and_resource"]], "mirna_identifiers_by_reference (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.mirna_identifiers_by_reference"]], "mirna_identifiers_by_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.mirna_identifiers_by_resource"]], "mirna_labels_by_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.mirna_labels_by_data_model"]], "mirna_labels_by_interaction_type (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.mirna_labels_by_interaction_type"]], "mirna_labels_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.mirna_labels_by_interaction_type_and_data_model"]], "mirna_labels_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.mirna_labels_by_interaction_type_and_data_model_and_resource"]], "mirna_labels_by_reference (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.mirna_labels_by_reference"]], "mirna_labels_by_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.mirna_labels_by_resource"]], "mirna_target() (pypath.core.network.network class method)": [[145, "pypath.core.network.Network.mirna_target"]], "mirnas_by_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.mirnas_by_data_model"]], "mirnas_by_interaction_type (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.mirnas_by_interaction_type"]], "mirnas_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.mirnas_by_interaction_type_and_data_model"]], "mirnas_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.mirnas_by_interaction_type_and_data_model_and_resource"]], "mirnas_by_reference (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.mirnas_by_reference"]], "mirnas_by_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.mirnas_by_resource"]], "numof_interactions_per_reference() (pypath.core.network.network method)": [[145, "pypath.core.network.Network.numof_interactions_per_reference"]], "organisms_check() (pypath.core.network.network method)": [[145, "pypath.core.network.Network.organisms_check"]], "partners() (pypath.core.network.network method)": [[145, "pypath.core.network.Network.partners"]], "post_transcriptionally_activated_by (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.post_transcriptionally_activated_by"]], "post_transcriptionally_activates (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.post_transcriptionally_activates"]], "post_transcriptionally_regulated_by (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.post_transcriptionally_regulated_by"]], "post_transcriptionally_regulates (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.post_transcriptionally_regulates"]], "post_transcriptionally_suppressed_by (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.post_transcriptionally_suppressed_by"]], "post_transcriptionally_suppresses (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.post_transcriptionally_suppresses"]], "post_translationally_activated_by (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.post_translationally_activated_by"]], "post_translationally_activates (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.post_translationally_activates"]], "post_translationally_regulated_by (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.post_translationally_regulated_by"]], "post_translationally_regulates (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.post_translationally_regulates"]], "post_translationally_suppressed_by (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.post_translationally_suppressed_by"]], "post_translationally_suppresses (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.post_translationally_suppresses"]], "protein_identifiers_by_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.protein_identifiers_by_data_model"]], "protein_identifiers_by_interaction_type (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.protein_identifiers_by_interaction_type"]], "protein_identifiers_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.protein_identifiers_by_interaction_type_and_data_model"]], "protein_identifiers_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.protein_identifiers_by_interaction_type_and_data_model_and_resource"]], "protein_identifiers_by_reference (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.protein_identifiers_by_reference"]], "protein_identifiers_by_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.protein_identifiers_by_resource"]], "protein_labels_by_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.protein_labels_by_data_model"]], "protein_labels_by_interaction_type (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.protein_labels_by_interaction_type"]], "protein_labels_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.protein_labels_by_interaction_type_and_data_model"]], "protein_labels_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.protein_labels_by_interaction_type_and_data_model_and_resource"]], "protein_labels_by_reference (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.protein_labels_by_reference"]], "protein_labels_by_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.protein_labels_by_resource"]], "proteins_by_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.proteins_by_data_model"]], "proteins_by_interaction_type (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.proteins_by_interaction_type"]], "proteins_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.proteins_by_interaction_type_and_data_model"]], "proteins_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.proteins_by_interaction_type_and_data_model_and_resource"]], "proteins_by_reference (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.proteins_by_reference"]], "proteins_by_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.proteins_by_resource"]], "random_interaction() (pypath.core.network.network method)": [[145, "pypath.core.network.Network.random_interaction"]], "references_by_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.references_by_data_model"]], "references_by_interaction_type (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.references_by_interaction_type"]], "references_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.references_by_interaction_type_and_data_model"]], "references_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.references_by_interaction_type_and_data_model_and_resource"]], "references_by_reference (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.references_by_reference"]], "references_by_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.references_by_resource"]], "regulated_by (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.regulated_by"]], "regulates (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.regulates"]], "reload() (pypath.core.network.network method)": [[145, "pypath.core.network.Network.reload"]], "remove_interaction() (pypath.core.network.network method)": [[145, "pypath.core.network.Network.remove_interaction"]], "remove_loops() (pypath.core.network.network method)": [[145, "pypath.core.network.Network.remove_loops"]], "remove_node() (pypath.core.network.network method)": [[145, "pypath.core.network.Network.remove_node"]], "remove_zero_degree() (pypath.core.network.network method)": [[145, "pypath.core.network.Network.remove_zero_degree"]], "reset() (pypath.core.network.network method)": [[145, "pypath.core.network.Network.reset"]], "resource_names (pypath.core.network.network property)": [[145, "pypath.core.network.Network.resource_names"]], "resource_names_by_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.resource_names_by_data_model"]], "resource_names_by_interaction_type (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.resource_names_by_interaction_type"]], "resource_names_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.resource_names_by_interaction_type_and_data_model"]], "resource_names_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.resource_names_by_interaction_type_and_data_model_and_resource"]], "resource_names_by_reference (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.resource_names_by_reference"]], "resource_names_by_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.resource_names_by_resource"]], "resource_names_via_by_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.resource_names_via_by_data_model"]], "resource_names_via_by_interaction_type (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.resource_names_via_by_interaction_type"]], "resource_names_via_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.resource_names_via_by_interaction_type_and_data_model"]], "resource_names_via_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.resource_names_via_by_interaction_type_and_data_model_and_resource"]], "resource_names_via_by_reference (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.resource_names_via_by_reference"]], "resource_names_via_by_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.resource_names_via_by_resource"]], "resources (pypath.core.network.network property)": [[145, "pypath.core.network.Network.resources"]], "resources_by_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.resources_by_data_model"]], "resources_by_interaction_type (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.resources_by_interaction_type"]], "resources_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.resources_by_interaction_type_and_data_model"]], "resources_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.resources_by_interaction_type_and_data_model_and_resource"]], "resources_by_reference (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.resources_by_reference"]], "resources_by_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.resources_by_resource"]], "resources_via_by_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.resources_via_by_data_model"]], "resources_via_by_interaction_type (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.resources_via_by_interaction_type"]], "resources_via_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.resources_via_by_interaction_type_and_data_model"]], "resources_via_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.resources_via_by_interaction_type_and_data_model_and_resource"]], "resources_via_by_reference (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.resources_via_by_reference"]], "resources_via_by_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.resources_via_by_resource"]], "save_to_pickle() (pypath.core.network.network method)": [[145, "pypath.core.network.Network.save_to_pickle"]], "small_molecule_identifiers_by_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.small_molecule_identifiers_by_data_model"]], "small_molecule_identifiers_by_interaction_type (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.small_molecule_identifiers_by_interaction_type"]], "small_molecule_identifiers_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.small_molecule_identifiers_by_interaction_type_and_data_model"]], "small_molecule_identifiers_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.small_molecule_identifiers_by_interaction_type_and_data_model_and_resource"]], "small_molecule_identifiers_by_reference (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.small_molecule_identifiers_by_reference"]], "small_molecule_identifiers_by_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.small_molecule_identifiers_by_resource"]], "small_molecule_labels_by_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.small_molecule_labels_by_data_model"]], "small_molecule_labels_by_interaction_type (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.small_molecule_labels_by_interaction_type"]], "small_molecule_labels_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.small_molecule_labels_by_interaction_type_and_data_model"]], "small_molecule_labels_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.small_molecule_labels_by_interaction_type_and_data_model_and_resource"]], "small_molecule_labels_by_reference (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.small_molecule_labels_by_reference"]], "small_molecule_labels_by_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.small_molecule_labels_by_resource"]], "small_molecules_by_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.small_molecules_by_data_model"]], "small_molecules_by_interaction_type (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.small_molecules_by_interaction_type"]], "small_molecules_by_interaction_type_and_data_model (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.small_molecules_by_interaction_type_and_data_model"]], "small_molecules_by_interaction_type_and_data_model_and_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.small_molecules_by_interaction_type_and_data_model_and_resource"]], "small_molecules_by_reference (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.small_molecules_by_reference"]], "small_molecules_by_resource (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.small_molecules_by_resource"]], "summaries_tab() (pypath.core.network.network method)": [[145, "pypath.core.network.Network.summaries_tab"]], "suppressed_by (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.suppressed_by"]], "suppresses (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.suppresses"]], "to_igraph() (pypath.core.network.network method)": [[145, "pypath.core.network.Network.to_igraph"]], "transcription() (pypath.core.network.network class method)": [[145, "pypath.core.network.Network.transcription"]], "transcriptionally_activated_by (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.transcriptionally_activated_by"]], "transcriptionally_activates (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.transcriptionally_activates"]], "transcriptionally_regulated_by (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.transcriptionally_regulated_by"]], "transcriptionally_regulates (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.transcriptionally_regulates"]], "transcriptionally_suppressed_by (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.transcriptionally_suppressed_by"]], "transcriptionally_suppresses (pypath.core.network.network attribute)": [[145, "pypath.core.network.Network.transcriptionally_suppresses"]], "networkentitycollection (class in pypath.core.network)": [[146, "pypath.core.network.NetworkEntityCollection"]], "__init__() (pypath.core.network.networkentitycollection method)": [[146, "pypath.core.network.NetworkEntityCollection.__init__"]], "networkstatsrecord (class in pypath.core.network)": [[147, "pypath.core.network.NetworkStatsRecord"]], "__init__() (pypath.core.network.networkstatsrecord method)": [[147, "pypath.core.network.NetworkStatsRecord.__init__"]], "by_category (pypath.core.network.networkstatsrecord attribute)": [[147, "pypath.core.network.NetworkStatsRecord.by_category"]], "by_resource (pypath.core.network.networkstatsrecord attribute)": [[147, "pypath.core.network.NetworkStatsRecord.by_resource"]], "cat_resource (pypath.core.network.networkstatsrecord attribute)": [[147, "pypath.core.network.NetworkStatsRecord.cat_resource"]], "count() (pypath.core.network.networkstatsrecord method)": [[147, "pypath.core.network.NetworkStatsRecord.count"]], "index() (pypath.core.network.networkstatsrecord method)": [[147, "pypath.core.network.NetworkStatsRecord.index"]], "label (pypath.core.network.networkstatsrecord attribute)": [[147, "pypath.core.network.NetworkStatsRecord.label"]], "method (pypath.core.network.networkstatsrecord attribute)": [[147, "pypath.core.network.NetworkStatsRecord.method"]], "percent (pypath.core.network.networkstatsrecord attribute)": [[147, "pypath.core.network.NetworkStatsRecord.percent"]], "percent_cat (pypath.core.network.networkstatsrecord attribute)": [[147, "pypath.core.network.NetworkStatsRecord.percent_cat"]], "percent_res_cat (pypath.core.network.networkstatsrecord attribute)": [[147, "pypath.core.network.NetworkStatsRecord.percent_res_cat"]], "resource_cat (pypath.core.network.networkstatsrecord attribute)": [[147, "pypath.core.network.NetworkStatsRecord.resource_cat"]], "shared (pypath.core.network.networkstatsrecord attribute)": [[147, "pypath.core.network.NetworkStatsRecord.shared"]], "shared_cat (pypath.core.network.networkstatsrecord attribute)": [[147, "pypath.core.network.NetworkStatsRecord.shared_cat"]], "shared_res_cat (pypath.core.network.networkstatsrecord attribute)": [[147, "pypath.core.network.NetworkStatsRecord.shared_res_cat"]], "total (pypath.core.network.networkstatsrecord attribute)": [[147, "pypath.core.network.NetworkStatsRecord.total"]], "unique (pypath.core.network.networkstatsrecord attribute)": [[147, "pypath.core.network.NetworkStatsRecord.unique"]], "unique_cat (pypath.core.network.networkstatsrecord attribute)": [[147, "pypath.core.network.NetworkStatsRecord.unique_cat"]], "unique_res_cat (pypath.core.network.networkstatsrecord attribute)": [[147, "pypath.core.network.NetworkStatsRecord.unique_res_cat"]], "get_db() (in module pypath.core.network)": [[148, "pypath.core.network.get_db"]], "init_db() (in module pypath.core.network)": [[149, "pypath.core.network.init_db"]], "pypath.data": [[150, "module-pypath.data"]], "disclaimer() (in module pypath)": [[151, "pypath.disclaimer"]], "info() (in module pypath)": [[152, "pypath.info"]], "pypath.inputs": [[153, "module-pypath.inputs"]], "pypath.inputs.abs": [[154, "module-pypath.inputs.abs"]], "abs_interactions() (in module pypath.inputs.abs)": [[155, "pypath.inputs.abs.abs_interactions"]], "pypath.inputs.acsn": [[156, "module-pypath.inputs.acsn"]], "acsn_interactions() (in module pypath.inputs.acsn)": [[157, "pypath.inputs.acsn.acsn_interactions"]], "acsn_interactions_sif() (in module pypath.inputs.acsn)": [[158, "pypath.inputs.acsn.acsn_interactions_sif"]], "pypath.inputs.adhesome": [[159, "module-pypath.inputs.adhesome"]], "adhesome_annotations() (in module pypath.inputs.adhesome)": [[160, "pypath.inputs.adhesome.adhesome_annotations"]], "adhesome_interactions() (in module pypath.inputs.adhesome)": [[161, "pypath.inputs.adhesome.adhesome_interactions"]], "pypath.inputs.adrecs": [[162, "module-pypath.inputs.adrecs"]], "adrecsadr (class in pypath.inputs.adrecs)": [[163, "pypath.inputs.adrecs.AdrecsAdr"]], "__init__() (pypath.inputs.adrecs.adrecsadr method)": [[163, "pypath.inputs.adrecs.AdrecsAdr.__init__"]], "adr_class (pypath.inputs.adrecs.adrecsadr attribute)": [[163, "pypath.inputs.adrecs.AdrecsAdr.adr_class"]], "badd (pypath.inputs.adrecs.adrecsadr attribute)": [[163, "pypath.inputs.adrecs.AdrecsAdr.badd"]], "count() (pypath.inputs.adrecs.adrecsadr method)": [[163, "pypath.inputs.adrecs.AdrecsAdr.count"]], "index() (pypath.inputs.adrecs.adrecsadr method)": [[163, "pypath.inputs.adrecs.AdrecsAdr.index"]], "adrecschildparent (class in pypath.inputs.adrecs)": [[164, "pypath.inputs.adrecs.AdrecsChildParent"]], "__init__() (pypath.inputs.adrecs.adrecschildparent method)": [[164, "pypath.inputs.adrecs.AdrecsChildParent.__init__"]], "child (pypath.inputs.adrecs.adrecschildparent attribute)": [[164, "pypath.inputs.adrecs.AdrecsChildParent.child"]], "count() (pypath.inputs.adrecs.adrecschildparent method)": [[164, "pypath.inputs.adrecs.AdrecsChildParent.count"]], "index() (pypath.inputs.adrecs.adrecschildparent method)": [[164, "pypath.inputs.adrecs.AdrecsChildParent.index"]], "parent (pypath.inputs.adrecs.adrecschildparent attribute)": [[164, "pypath.inputs.adrecs.AdrecsChildParent.parent"]], "adrecsdrug (class in pypath.inputs.adrecs)": [[165, "pypath.inputs.adrecs.AdrecsDrug"]], "__init__() (pypath.inputs.adrecs.adrecsdrug method)": [[165, "pypath.inputs.adrecs.AdrecsDrug.__init__"]], "badd (pypath.inputs.adrecs.adrecsdrug attribute)": [[165, "pypath.inputs.adrecs.AdrecsDrug.badd"]], "count() (pypath.inputs.adrecs.adrecsdrug method)": [[165, "pypath.inputs.adrecs.AdrecsDrug.count"]], "drug (pypath.inputs.adrecs.adrecsdrug attribute)": [[165, "pypath.inputs.adrecs.AdrecsDrug.drug"]], "drugbank (pypath.inputs.adrecs.adrecsdrug attribute)": [[165, "pypath.inputs.adrecs.AdrecsDrug.drugbank"]], "index() (pypath.inputs.adrecs.adrecsdrug method)": [[165, "pypath.inputs.adrecs.AdrecsDrug.index"]], "kegg (pypath.inputs.adrecs.adrecsdrug attribute)": [[165, "pypath.inputs.adrecs.AdrecsDrug.kegg"]], "mesh (pypath.inputs.adrecs.adrecsdrug attribute)": [[165, "pypath.inputs.adrecs.AdrecsDrug.mesh"]], "pubchem_cid (pypath.inputs.adrecs.adrecsdrug attribute)": [[165, "pypath.inputs.adrecs.AdrecsDrug.pubchem_cid"]], "synonyms (pypath.inputs.adrecs.adrecsdrug attribute)": [[165, "pypath.inputs.adrecs.AdrecsDrug.synonyms"]], "tdd (pypath.inputs.adrecs.adrecsdrug attribute)": [[165, "pypath.inputs.adrecs.AdrecsDrug.tdd"]], "adrecsdrugadr (class in pypath.inputs.adrecs)": [[166, "pypath.inputs.adrecs.AdrecsDrugAdr"]], "__init__() (pypath.inputs.adrecs.adrecsdrugadr method)": [[166, "pypath.inputs.adrecs.AdrecsDrugAdr.__init__"]], "adr (pypath.inputs.adrecs.adrecsdrugadr attribute)": [[166, "pypath.inputs.adrecs.AdrecsDrugAdr.adr"]], "adr_badd (pypath.inputs.adrecs.adrecsdrugadr attribute)": [[166, "pypath.inputs.adrecs.AdrecsDrugAdr.adr_badd"]], "count() (pypath.inputs.adrecs.adrecsdrugadr method)": [[166, "pypath.inputs.adrecs.AdrecsDrugAdr.count"]], "drug (pypath.inputs.adrecs.adrecsdrugadr attribute)": [[166, "pypath.inputs.adrecs.AdrecsDrugAdr.drug"]], "drug_badd (pypath.inputs.adrecs.adrecsdrugadr attribute)": [[166, "pypath.inputs.adrecs.AdrecsDrugAdr.drug_badd"]], "index() (pypath.inputs.adrecs.adrecsdrugadr method)": [[166, "pypath.inputs.adrecs.AdrecsDrugAdr.index"]], "adrecsterm (class in pypath.inputs.adrecs)": [[167, "pypath.inputs.adrecs.AdrecsTerm"]], "__init__() (pypath.inputs.adrecs.adrecsterm method)": [[167, "pypath.inputs.adrecs.AdrecsTerm.__init__"]], "adrecs_class (pypath.inputs.adrecs.adrecsterm attribute)": [[167, "pypath.inputs.adrecs.AdrecsTerm.adrecs_class"]], "badd (pypath.inputs.adrecs.adrecsterm attribute)": [[167, "pypath.inputs.adrecs.AdrecsTerm.badd"]], "count() (pypath.inputs.adrecs.adrecsterm method)": [[167, "pypath.inputs.adrecs.AdrecsTerm.count"]], "index() (pypath.inputs.adrecs.adrecsterm method)": [[167, "pypath.inputs.adrecs.AdrecsTerm.index"]], "meddra (pypath.inputs.adrecs.adrecsterm attribute)": [[167, "pypath.inputs.adrecs.AdrecsTerm.meddra"]], "name (pypath.inputs.adrecs.adrecsterm attribute)": [[167, "pypath.inputs.adrecs.AdrecsTerm.name"]], "synonyms (pypath.inputs.adrecs.adrecsterm attribute)": [[167, "pypath.inputs.adrecs.AdrecsTerm.synonyms"]], "adrecs_adr_ontology() (in module pypath.inputs.adrecs)": [[168, "pypath.inputs.adrecs.adrecs_adr_ontology"]], "adrecs_drug_adr() (in module pypath.inputs.adrecs)": [[169, "pypath.inputs.adrecs.adrecs_drug_adr"]], "adrecs_drug_identifiers() (in module pypath.inputs.adrecs)": [[170, "pypath.inputs.adrecs.adrecs_drug_identifiers"]], "adrecs_hierarchy() (in module pypath.inputs.adrecs)": [[171, "pypath.inputs.adrecs.adrecs_hierarchy"]], "pypath.inputs.almen2009": [[172, "module-pypath.inputs.almen2009"]], "almen2009_annotations() (in module pypath.inputs.almen2009)": [[173, "pypath.inputs.almen2009.almen2009_annotations"]], "pypath.inputs.baccin2019": [[174, "module-pypath.inputs.baccin2019"]], "baccin2019_annotations() (in module pypath.inputs.baccin2019)": [[175, "pypath.inputs.baccin2019.baccin2019_annotations"]], "baccin2019_interactions() (in module pypath.inputs.baccin2019)": [[176, "pypath.inputs.baccin2019.baccin2019_interactions"]], "pypath.inputs.biogps": [[177, "module-pypath.inputs.biogps"]], "biogpsdataset (class in pypath.inputs.biogps)": [[178, "pypath.inputs.biogps.BiogpsDataset"]], "__init__() (pypath.inputs.biogps.biogpsdataset method)": [[178, "pypath.inputs.biogps.BiogpsDataset.__init__"]], "count() (pypath.inputs.biogps.biogpsdataset method)": [[178, "pypath.inputs.biogps.BiogpsDataset.count"]], "index() (pypath.inputs.biogps.biogpsdataset method)": [[178, "pypath.inputs.biogps.BiogpsDataset.index"]], "label (pypath.inputs.biogps.biogpsdataset attribute)": [[178, "pypath.inputs.biogps.BiogpsDataset.label"]], "organism (pypath.inputs.biogps.biogpsdataset attribute)": [[178, "pypath.inputs.biogps.BiogpsDataset.organism"]], "url (pypath.inputs.biogps.biogpsdataset attribute)": [[178, "pypath.inputs.biogps.BiogpsDataset.url"]], "biogps_annotations() (in module pypath.inputs.biogps)": [[179, "pypath.inputs.biogps.biogps_annotations"]], "biogps_datasets() (in module pypath.inputs.biogps)": [[180, "pypath.inputs.biogps.biogps_datasets"]], "biogps_download() (in module pypath.inputs.biogps)": [[181, "pypath.inputs.biogps.biogps_download"]], "biogps_download_all() (in module pypath.inputs.biogps)": [[182, "pypath.inputs.biogps.biogps_download_all"]], "pypath.inputs.biogrid": [[183, "module-pypath.inputs.biogrid"]], "biogrid_all_interactions() (in module pypath.inputs.biogrid)": [[184, "pypath.inputs.biogrid.biogrid_all_interactions"]], "biogrid_interactions() (in module pypath.inputs.biogrid)": [[185, "pypath.inputs.biogrid.biogrid_interactions"]], "pypath.inputs.biomart": [[186, "module-pypath.inputs.biomart"]], "biomart_homology() (in module pypath.inputs.biomart)": [[187, "pypath.inputs.biomart.biomart_homology"]], "biomart_microarray() (in module pypath.inputs.biomart)": [[188, "pypath.inputs.biomart.biomart_microarray"]], "biomart_microarray_types() (in module pypath.inputs.biomart)": [[189, "pypath.inputs.biomart.biomart_microarray_types"]], "biomart_microarrays() (in module pypath.inputs.biomart)": [[190, "pypath.inputs.biomart.biomart_microarrays"]], "biomart_query() (in module pypath.inputs.biomart)": [[191, "pypath.inputs.biomart.biomart_query"]], "pypath.inputs.biomodels": [[192, "module-pypath.inputs.biomodels"]], "download_single_model() (in module pypath.inputs.biomodels)": [[193, "pypath.inputs.biomodels.download_single_model"]], "get_all_models() (in module pypath.inputs.biomodels)": [[194, "pypath.inputs.biomodels.get_all_models"]], "get_biomodels() (in module pypath.inputs.biomodels)": [[195, "pypath.inputs.biomodels.get_biomodels"]], "get_biomodels_req() (in module pypath.inputs.biomodels)": [[196, "pypath.inputs.biomodels.get_biomodels_req"]], "get_single_model() (in module pypath.inputs.biomodels)": [[197, "pypath.inputs.biomodels.get_single_model"]], "pypath.inputs.ca1": [[198, "module-pypath.inputs.ca1"]], "ca1_interactions() (in module pypath.inputs.ca1)": [[199, "pypath.inputs.ca1.ca1_interactions"]], "pypath.inputs.cancercellmap": [[200, "module-pypath.inputs.cancercellmap"]], "ccmap_interactions() (in module pypath.inputs.cancercellmap)": [[201, "pypath.inputs.cancercellmap.ccmap_interactions"]], "pypath.inputs.cancerdrugsdb": [[202, "module-pypath.inputs.cancerdrugsdb"]], "cancerdrugsdb_annotations() (in module pypath.inputs.cancerdrugsdb)": [[203, "pypath.inputs.cancerdrugsdb.cancerdrugsdb_annotations"]], "cancerdrugsdb_download() (in module pypath.inputs.cancerdrugsdb)": [[204, "pypath.inputs.cancerdrugsdb.cancerdrugsdb_download"]], "cancerdrugsdb_interactions() (in module pypath.inputs.cancerdrugsdb)": [[205, "pypath.inputs.cancerdrugsdb.cancerdrugsdb_interactions"]], "pypath.inputs.cancersea": [[206, "module-pypath.inputs.cancersea"]], "cancersea_annotations() (in module pypath.inputs.cancersea)": [[207, "pypath.inputs.cancersea.cancersea_annotations"]], "pypath.inputs.cell": [[208, "module-pypath.inputs.cell"]], "cell_supplementary() (in module pypath.inputs.cell)": [[209, "pypath.inputs.cell.cell_supplementary"]], "pypath.inputs.cellcall": [[210, "module-pypath.inputs.cellcall"]], "cellcall_annotations() (in module pypath.inputs.cellcall)": [[211, "pypath.inputs.cellcall.cellcall_annotations"]], "cellcall_download() (in module pypath.inputs.cellcall)": [[212, "pypath.inputs.cellcall.cellcall_download"]], "cellcall_download_all() (in module pypath.inputs.cellcall)": [[213, "pypath.inputs.cellcall.cellcall_download_all"]], "cellcall_interactions() (in module pypath.inputs.cellcall)": [[214, "pypath.inputs.cellcall.cellcall_interactions"]], "pypath.inputs.cellcellinteractions": [[215, "module-pypath.inputs.cellcellinteractions"]], "cellcellinteractions_annotations() (in module pypath.inputs.cellcellinteractions)": [[216, "pypath.inputs.cellcellinteractions.cellcellinteractions_annotations"]], "pypath.inputs.cellchatdb": [[217, "module-pypath.inputs.cellchatdb"]], "cellchatdb_annotations() (in module pypath.inputs.cellchatdb)": [[218, "pypath.inputs.cellchatdb.cellchatdb_annotations"]], "cellchatdb_cofactors() (in module pypath.inputs.cellchatdb)": [[219, "pypath.inputs.cellchatdb.cellchatdb_cofactors"]], "cellchatdb_complexes() (in module pypath.inputs.cellchatdb)": [[220, "pypath.inputs.cellchatdb.cellchatdb_complexes"]], "cellchatdb_download() (in module pypath.inputs.cellchatdb)": [[221, "pypath.inputs.cellchatdb.cellchatdb_download"]], "cellchatdb_interactions() (in module pypath.inputs.cellchatdb)": [[222, "pypath.inputs.cellchatdb.cellchatdb_interactions"]], "pypath.inputs.cellinker": [[223, "module-pypath.inputs.cellinker"]], "cellinkerinteraction (class in pypath.inputs.cellinker)": [[224, "pypath.inputs.cellinker.CellinkerInteraction"]], "__init__() (pypath.inputs.cellinker.cellinkerinteraction method)": [[224, "pypath.inputs.cellinker.CellinkerInteraction.__init__"]], "count() (pypath.inputs.cellinker.cellinkerinteraction method)": [[224, "pypath.inputs.cellinker.CellinkerInteraction.count"]], "index() (pypath.inputs.cellinker.cellinkerinteraction method)": [[224, "pypath.inputs.cellinker.CellinkerInteraction.index"]], "ligand (pypath.inputs.cellinker.cellinkerinteraction attribute)": [[224, "pypath.inputs.cellinker.CellinkerInteraction.ligand"]], "ligand_location (pypath.inputs.cellinker.cellinkerinteraction attribute)": [[224, "pypath.inputs.cellinker.CellinkerInteraction.ligand_location"]], "pmids (pypath.inputs.cellinker.cellinkerinteraction attribute)": [[224, "pypath.inputs.cellinker.CellinkerInteraction.pmids"]], "receptor (pypath.inputs.cellinker.cellinkerinteraction attribute)": [[224, "pypath.inputs.cellinker.CellinkerInteraction.receptor"]], "receptor_location (pypath.inputs.cellinker.cellinkerinteraction attribute)": [[224, "pypath.inputs.cellinker.CellinkerInteraction.receptor_location"]], "resources (pypath.inputs.cellinker.cellinkerinteraction attribute)": [[224, "pypath.inputs.cellinker.CellinkerInteraction.resources"]], "type (pypath.inputs.cellinker.cellinkerinteraction attribute)": [[224, "pypath.inputs.cellinker.CellinkerInteraction.type"]], "cellinker_annotations() (in module pypath.inputs.cellinker)": [[225, "pypath.inputs.cellinker.cellinker_annotations"]], "cellinker_complex_annotations() (in module pypath.inputs.cellinker)": [[226, "pypath.inputs.cellinker.cellinker_complex_annotations"]], "cellinker_complexes() (in module pypath.inputs.cellinker)": [[227, "pypath.inputs.cellinker.cellinker_complexes"]], "cellinker_complexes_raw() (in module pypath.inputs.cellinker)": [[228, "pypath.inputs.cellinker.cellinker_complexes_raw"]], "cellinker_lr_interactions() (in module pypath.inputs.cellinker)": [[229, "pypath.inputs.cellinker.cellinker_lr_interactions"]], "cellinker_lr_interactions_raw() (in module pypath.inputs.cellinker)": [[230, "pypath.inputs.cellinker.cellinker_lr_interactions_raw"]], "cellinker_protein_annotations() (in module pypath.inputs.cellinker)": [[231, "pypath.inputs.cellinker.cellinker_protein_annotations"]], "cellinker_smol_interactions() (in module pypath.inputs.cellinker)": [[232, "pypath.inputs.cellinker.cellinker_smol_interactions"]], "cellinker_smol_interactions_raw() (in module pypath.inputs.cellinker)": [[233, "pypath.inputs.cellinker.cellinker_smol_interactions_raw"]], "components_to_complex() (in module pypath.inputs.cellinker)": [[234, "pypath.inputs.cellinker.components_to_complex"]], "pypath.inputs.cellphonedb": [[235, "module-pypath.inputs.cellphonedb"]], "cellphonedbannotation (class in pypath.inputs.cellphonedb)": [[236, "pypath.inputs.cellphonedb.CellPhoneDBAnnotation"]], "__init__() (pypath.inputs.cellphonedb.cellphonedbannotation method)": [[236, "pypath.inputs.cellphonedb.CellPhoneDBAnnotation.__init__"]], "count() (pypath.inputs.cellphonedb.cellphonedbannotation method)": [[236, "pypath.inputs.cellphonedb.CellPhoneDBAnnotation.count"]], "index() (pypath.inputs.cellphonedb.cellphonedbannotation method)": [[236, "pypath.inputs.cellphonedb.CellPhoneDBAnnotation.index"]], "integrin (pypath.inputs.cellphonedb.cellphonedbannotation attribute)": [[236, "pypath.inputs.cellphonedb.CellPhoneDBAnnotation.integrin"]], "peripheral (pypath.inputs.cellphonedb.cellphonedbannotation attribute)": [[236, "pypath.inputs.cellphonedb.CellPhoneDBAnnotation.peripheral"]], "receptor (pypath.inputs.cellphonedb.cellphonedbannotation attribute)": [[236, "pypath.inputs.cellphonedb.CellPhoneDBAnnotation.receptor"]], "receptor_class (pypath.inputs.cellphonedb.cellphonedbannotation attribute)": [[236, "pypath.inputs.cellphonedb.CellPhoneDBAnnotation.receptor_class"]], "secreted (pypath.inputs.cellphonedb.cellphonedbannotation attribute)": [[236, "pypath.inputs.cellphonedb.CellPhoneDBAnnotation.secreted"]], "secreted_class (pypath.inputs.cellphonedb.cellphonedbannotation attribute)": [[236, "pypath.inputs.cellphonedb.CellPhoneDBAnnotation.secreted_class"]], "transmembrane (pypath.inputs.cellphonedb.cellphonedbannotation attribute)": [[236, "pypath.inputs.cellphonedb.CellPhoneDBAnnotation.transmembrane"]], "cellphonedb_complex_annotations() (in module pypath.inputs.cellphonedb)": [[237, "pypath.inputs.cellphonedb.cellphonedb_complex_annotations"]], "cellphonedb_complexes() (in module pypath.inputs.cellphonedb)": [[238, "pypath.inputs.cellphonedb.cellphonedb_complexes"]], "cellphonedb_interactions() (in module pypath.inputs.cellphonedb)": [[239, "pypath.inputs.cellphonedb.cellphonedb_interactions"]], "cellphonedb_ligands_receptors() (in module pypath.inputs.cellphonedb)": [[240, "pypath.inputs.cellphonedb.cellphonedb_ligands_receptors"]], "cellphonedb_protein_annotations() (in module pypath.inputs.cellphonedb)": [[241, "pypath.inputs.cellphonedb.cellphonedb_protein_annotations"]], "pypath.inputs.celltalkdb": [[242, "module-pypath.inputs.celltalkdb"]], "celltalkdb_annotations() (in module pypath.inputs.celltalkdb)": [[243, "pypath.inputs.celltalkdb.celltalkdb_annotations"]], "celltalkdb_download() (in module pypath.inputs.celltalkdb)": [[244, "pypath.inputs.celltalkdb.celltalkdb_download"]], "celltalkdb_interactions() (in module pypath.inputs.celltalkdb)": [[245, "pypath.inputs.celltalkdb.celltalkdb_interactions"]], "pypath.inputs.celltypist": [[246, "module-pypath.inputs.celltypist"]], "celltypist_annotations() (in module pypath.inputs.celltypist)": [[247, "pypath.inputs.celltypist.celltypist_annotations"]], "pypath.inputs.chembl": [[248, "module-pypath.inputs.chembl"]], "chembl_activities() (in module pypath.inputs.chembl)": [[249, "pypath.inputs.chembl.chembl_activities"]], "chembl_assays() (in module pypath.inputs.chembl)": [[250, "pypath.inputs.chembl.chembl_assays"]], "chembl_documents() (in module pypath.inputs.chembl)": [[251, "pypath.inputs.chembl.chembl_documents"]], "chembl_drug_indications() (in module pypath.inputs.chembl)": [[252, "pypath.inputs.chembl.chembl_drug_indications"]], "chembl_mechanisms() (in module pypath.inputs.chembl)": [[253, "pypath.inputs.chembl.chembl_mechanisms"]], "chembl_molecules() (in module pypath.inputs.chembl)": [[254, "pypath.inputs.chembl.chembl_molecules"]], "chembl_targets() (in module pypath.inputs.chembl)": [[255, "pypath.inputs.chembl.chembl_targets"]], "pypath.inputs.clinvar": [[256, "module-pypath.inputs.clinvar"]], "clinvar_citations() (in module pypath.inputs.clinvar)": [[257, "pypath.inputs.clinvar.clinvar_citations"]], "clinvar_raw() (in module pypath.inputs.clinvar)": [[258, "pypath.inputs.clinvar.clinvar_raw"]], "pypath.inputs.collectri": [[259, "module-pypath.inputs.collectri"]], "collectri_interactions() (in module pypath.inputs.collectri)": [[260, "pypath.inputs.collectri.collectri_interactions"]], "collectri_raw() (in module pypath.inputs.collectri)": [[261, "pypath.inputs.collectri.collectri_raw"]], "pypath.inputs.common": [[262, "module-pypath.inputs.common"]], "csv_sep_change() (in module pypath.inputs.common)": [[263, "pypath.inputs.common.csv_sep_change"]], "glom_fields() (in module pypath.inputs.common)": [[264, "pypath.inputs.common.glom_fields"]], "json_extract() (in module pypath.inputs.common)": [[265, "pypath.inputs.common.json_extract"]], "json_read() (in module pypath.inputs.common)": [[266, "pypath.inputs.common.json_read"]], "read_table() (in module pypath.inputs.common)": [[267, "pypath.inputs.common.read_table"]], "read_xls() (in module pypath.inputs.common)": [[268, "pypath.inputs.common.read_xls"]], "pypath.inputs.compath": [[269, "module-pypath.inputs.compath"]], "compath_mappings() (in module pypath.inputs.compath)": [[270, "pypath.inputs.compath.compath_mappings"]], "pypath.inputs.compleat": [[271, "module-pypath.inputs.compleat"]], "compleat_complexes() (in module pypath.inputs.compleat)": [[272, "pypath.inputs.compleat.compleat_complexes"]], "compleat_raw() (in module pypath.inputs.compleat)": [[273, "pypath.inputs.compleat.compleat_raw"]], "pypath.inputs.complexportal": [[274, "module-pypath.inputs.complexportal"]], "complexportal_complexes() (in module pypath.inputs.complexportal)": [[275, "pypath.inputs.complexportal.complexportal_complexes"]], "pypath.inputs.comppi": [[276, "module-pypath.inputs.comppi"]], "comppi_interaction_locations() (in module pypath.inputs.comppi)": [[277, "pypath.inputs.comppi.comppi_interaction_locations"]], "comppi_locations() (in module pypath.inputs.comppi)": [[278, "pypath.inputs.comppi.comppi_locations"]], "pypath.inputs.connectomedb": [[279, "module-pypath.inputs.connectomedb"]], "connectomedb_annotations() (in module pypath.inputs.connectomedb)": [[280, "pypath.inputs.connectomedb.connectomedb_annotations"]], "connectomedb_interactions() (in module pypath.inputs.connectomedb)": [[281, "pypath.inputs.connectomedb.connectomedb_interactions"]], "pypath.inputs.corum": [[282, "module-pypath.inputs.corum"]], "corum_complexes() (in module pypath.inputs.corum)": [[283, "pypath.inputs.corum.corum_complexes"]], "pypath.inputs.cosmic": [[284, "module-pypath.inputs.cosmic"]], "cancer_gene_census_annotations() (in module pypath.inputs.cosmic)": [[285, "pypath.inputs.cosmic.cancer_gene_census_annotations"]], "pypath.inputs.cpad": [[286, "module-pypath.inputs.cpad"]], "cpad_annotations() (in module pypath.inputs.cpad)": [[287, "pypath.inputs.cpad.cpad_annotations"]], "cpad_pathway_cancer() (in module pypath.inputs.cpad)": [[288, "pypath.inputs.cpad.cpad_pathway_cancer"]], "get_cpad() (in module pypath.inputs.cpad)": [[289, "pypath.inputs.cpad.get_cpad"]], "pypath.inputs.cpdb": [[290, "module-pypath.inputs.cpdb"]], "cpdb_interactions() (in module pypath.inputs.cpdb)": [[291, "pypath.inputs.cpdb.cpdb_interactions"]], "cpdb_interactions_ltp() (in module pypath.inputs.cpdb)": [[292, "pypath.inputs.cpdb.cpdb_interactions_ltp"]], "pypath.inputs.credentials": [[293, "module-pypath.inputs.credentials"]], "credentials() (in module pypath.inputs.credentials)": [[294, "pypath.inputs.credentials.credentials"]], "pypath.inputs.csa": [[295, "module-pypath.inputs.csa"]], "get_csa() (in module pypath.inputs.csa)": [[296, "pypath.inputs.csa.get_csa"]], "pypath.inputs.cspa": [[297, "module-pypath.inputs.cspa"]], "cspa_annotations() (in module pypath.inputs.cspa)": [[298, "pypath.inputs.cspa.cspa_annotations"]], "cspa_cell_type_annotations() (in module pypath.inputs.cspa)": [[299, "pypath.inputs.cspa.cspa_cell_type_annotations"]], "cspa_cell_types() (in module pypath.inputs.cspa)": [[300, "pypath.inputs.cspa.cspa_cell_types"]], "pypath.inputs.ctdbase": [[301, "module-pypath.inputs.ctdbase"]], "ctdbase_relations() (in module pypath.inputs.ctdbase)": [[302, "pypath.inputs.ctdbase.ctdbase_relations"]], "ctdbase_vocabulary() (in module pypath.inputs.ctdbase)": [[303, "pypath.inputs.ctdbase.ctdbase_vocabulary"]], "pypath.inputs.cytosig": [[304, "module-pypath.inputs.cytosig"]], "cytosig_annotations() (in module pypath.inputs.cytosig)": [[305, "pypath.inputs.cytosig.cytosig_annotations"]], "cytosig_df() (in module pypath.inputs.cytosig)": [[306, "pypath.inputs.cytosig.cytosig_df"]], "pypath.inputs.dbptm": [[307, "module-pypath.inputs.dbptm"]], "dbptm_enzyme_substrate() (in module pypath.inputs.dbptm)": [[308, "pypath.inputs.dbptm.dbptm_enzyme_substrate"]], "dbptm_enzyme_substrate_old() (in module pypath.inputs.dbptm)": [[309, "pypath.inputs.dbptm.dbptm_enzyme_substrate_old"]], "dbptm_interactions() (in module pypath.inputs.dbptm)": [[310, "pypath.inputs.dbptm.dbptm_interactions"]], "pypath.inputs.ddinter": [[311, "module-pypath.inputs.ddinter"]], "ddinter_drug_interactions() (in module pypath.inputs.ddinter)": [[312, "pypath.inputs.ddinter.ddinter_drug_interactions"]], "ddinter_identifiers() (in module pypath.inputs.ddinter)": [[313, "pypath.inputs.ddinter.ddinter_identifiers"]], "ddinter_interactions() (in module pypath.inputs.ddinter)": [[314, "pypath.inputs.ddinter.ddinter_interactions"]], "ddinter_mappings() (in module pypath.inputs.ddinter)": [[315, "pypath.inputs.ddinter.ddinter_mappings"]], "ddinter_n_drugs() (in module pypath.inputs.ddinter)": [[316, "pypath.inputs.ddinter.ddinter_n_drugs"]], "pypath.inputs.deathdomain": [[317, "module-pypath.inputs.deathdomain"]], "deathdomain_interactions() (in module pypath.inputs.deathdomain)": [[318, "pypath.inputs.deathdomain.deathdomain_interactions"]], "deathdomain_interactions_rescued() (in module pypath.inputs.deathdomain)": [[319, "pypath.inputs.deathdomain.deathdomain_interactions_rescued"]], "pypath.inputs.depod": [[320, "module-pypath.inputs.depod"]], "depod_enzyme_substrate() (in module pypath.inputs.depod)": [[321, "pypath.inputs.depod.depod_enzyme_substrate"]], "depod_interactions() (in module pypath.inputs.depod)": [[322, "pypath.inputs.depod.depod_interactions"]], "pypath.inputs.dgidb": [[323, "module-pypath.inputs.dgidb"]], "dgidb_annotations() (in module pypath.inputs.dgidb)": [[324, "pypath.inputs.dgidb.dgidb_annotations"]], "dgidb_interactions() (in module pypath.inputs.dgidb)": [[325, "pypath.inputs.dgidb.dgidb_interactions"]], "get_dgidb_old() (in module pypath.inputs.dgidb)": [[326, "pypath.inputs.dgidb.get_dgidb_old"]], "pypath.inputs.dip": [[327, "module-pypath.inputs.dip"]], "dip_interactions() (in module pypath.inputs.dip)": [[328, "pypath.inputs.dip.dip_interactions"]], "dip_login() (in module pypath.inputs.dip)": [[329, "pypath.inputs.dip.dip_login"]], "pypath.inputs.diseases": [[330, "module-pypath.inputs.diseases"]], "diseases_general() (in module pypath.inputs.diseases)": [[331, "pypath.inputs.diseases.diseases_general"]], "experiments_filtered() (in module pypath.inputs.diseases)": [[332, "pypath.inputs.diseases.experiments_filtered"]], "experiments_full() (in module pypath.inputs.diseases)": [[333, "pypath.inputs.diseases.experiments_full"]], "knowledge_filtered() (in module pypath.inputs.diseases)": [[334, "pypath.inputs.diseases.knowledge_filtered"]], "knowledge_full() (in module pypath.inputs.diseases)": [[335, "pypath.inputs.diseases.knowledge_full"]], "textmining_filtered() (in module pypath.inputs.diseases)": [[336, "pypath.inputs.diseases.textmining_filtered"]], "textmining_full() (in module pypath.inputs.diseases)": [[337, "pypath.inputs.diseases.textmining_full"]], "pypath.inputs.domino": [[338, "module-pypath.inputs.domino"]], "domino_ddi() (in module pypath.inputs.domino)": [[339, "pypath.inputs.domino.domino_ddi"]], "domino_enzsub() (in module pypath.inputs.domino)": [[340, "pypath.inputs.domino.domino_enzsub"]], "domino_interactions() (in module pypath.inputs.domino)": [[341, "pypath.inputs.domino.domino_interactions"]], "get_domino() (in module pypath.inputs.domino)": [[342, "pypath.inputs.domino.get_domino"]], "pypath.inputs.dorothea": [[343, "module-pypath.inputs.dorothea"]], "dorotheainteraction (class in pypath.inputs.dorothea)": [[344, "pypath.inputs.dorothea.DorotheaInteraction"]], "__init__() (pypath.inputs.dorothea.dorotheainteraction method)": [[344, "pypath.inputs.dorothea.DorotheaInteraction.__init__"]], "all_sources (pypath.inputs.dorothea.dorotheainteraction attribute)": [[344, "pypath.inputs.dorothea.DorotheaInteraction.all_sources"]], "chipseq (pypath.inputs.dorothea.dorotheainteraction attribute)": [[344, "pypath.inputs.dorothea.DorotheaInteraction.chipseq"]], "chipseq_sources (pypath.inputs.dorothea.dorotheainteraction attribute)": [[344, "pypath.inputs.dorothea.DorotheaInteraction.chipseq_sources"]], "coexp (pypath.inputs.dorothea.dorotheainteraction attribute)": [[344, "pypath.inputs.dorothea.DorotheaInteraction.coexp"]], "coexp_sources (pypath.inputs.dorothea.dorotheainteraction attribute)": [[344, "pypath.inputs.dorothea.DorotheaInteraction.coexp_sources"]], "count() (pypath.inputs.dorothea.dorotheainteraction method)": [[344, "pypath.inputs.dorothea.DorotheaInteraction.count"]], "curated (pypath.inputs.dorothea.dorotheainteraction attribute)": [[344, "pypath.inputs.dorothea.DorotheaInteraction.curated"]], "curated_sources (pypath.inputs.dorothea.dorotheainteraction attribute)": [[344, "pypath.inputs.dorothea.DorotheaInteraction.curated_sources"]], "effect (pypath.inputs.dorothea.dorotheainteraction attribute)": [[344, "pypath.inputs.dorothea.DorotheaInteraction.effect"]], "index() (pypath.inputs.dorothea.dorotheainteraction method)": [[344, "pypath.inputs.dorothea.DorotheaInteraction.index"]], "kegg_pathways (pypath.inputs.dorothea.dorotheainteraction attribute)": [[344, "pypath.inputs.dorothea.DorotheaInteraction.kegg_pathways"]], "level (pypath.inputs.dorothea.dorotheainteraction attribute)": [[344, "pypath.inputs.dorothea.DorotheaInteraction.level"]], "predicted (pypath.inputs.dorothea.dorotheainteraction attribute)": [[344, "pypath.inputs.dorothea.DorotheaInteraction.predicted"]], "predicted_sources (pypath.inputs.dorothea.dorotheainteraction attribute)": [[344, "pypath.inputs.dorothea.DorotheaInteraction.predicted_sources"]], "pubmed (pypath.inputs.dorothea.dorotheainteraction attribute)": [[344, "pypath.inputs.dorothea.DorotheaInteraction.pubmed"]], "target (pypath.inputs.dorothea.dorotheainteraction attribute)": [[344, "pypath.inputs.dorothea.DorotheaInteraction.target"]], "tf (pypath.inputs.dorothea.dorotheainteraction attribute)": [[344, "pypath.inputs.dorothea.DorotheaInteraction.tf"]], "dorothea_full_raw() (in module pypath.inputs.dorothea)": [[345, "pypath.inputs.dorothea.dorothea_full_raw"]], "dorothea_interactions() (in module pypath.inputs.dorothea)": [[346, "pypath.inputs.dorothea.dorothea_interactions"]], "dorothea_interactions_old() (in module pypath.inputs.dorothea)": [[347, "pypath.inputs.dorothea.dorothea_interactions_old"]], "dorothea_old_csv() (in module pypath.inputs.dorothea)": [[348, "pypath.inputs.dorothea.dorothea_old_csv"]], "dorothea_rda_raw() (in module pypath.inputs.dorothea)": [[349, "pypath.inputs.dorothea.dorothea_rda_raw"]], "get_dorothea_old() (in module pypath.inputs.dorothea)": [[350, "pypath.inputs.dorothea.get_dorothea_old"]], "get_tfregulons() (in module pypath.inputs.dorothea)": [[351, "pypath.inputs.dorothea.get_tfregulons"]], "tfregulons_interactions() (in module pypath.inputs.dorothea)": [[352, "pypath.inputs.dorothea.tfregulons_interactions"]], "tfregulons_interactions_old() (in module pypath.inputs.dorothea)": [[353, "pypath.inputs.dorothea.tfregulons_interactions_old"]], "pypath.inputs.drugbank": [[354, "module-pypath.inputs.drugbank"]], "drugbankfull (class in pypath.inputs.drugbank)": [[355, "pypath.inputs.drugbank.DrugbankFull"]], "__init__() (pypath.inputs.drugbank.drugbankfull method)": [[355, "pypath.inputs.drugbank.DrugbankFull.__init__"]], "drugbank_drugs_full() (pypath.inputs.drugbank.drugbankfull method)": [[355, "pypath.inputs.drugbank.DrugbankFull.drugbank_drugs_full"]], "drugbank_external_ids_full() (pypath.inputs.drugbank.drugbankfull method)": [[355, "pypath.inputs.drugbank.DrugbankFull.drugbank_external_ids_full"]], "drugbank_properties_full() (pypath.inputs.drugbank.drugbankfull method)": [[355, "pypath.inputs.drugbank.DrugbankFull.drugbank_properties_full"]], "drugbank_targets_full() (pypath.inputs.drugbank.drugbankfull method)": [[355, "pypath.inputs.drugbank.DrugbankFull.drugbank_targets_full"]], "drugbank_annotations() (in module pypath.inputs.drugbank)": [[356, "pypath.inputs.drugbank.drugbank_annotations"]], "drugbank_drugs() (in module pypath.inputs.drugbank)": [[357, "pypath.inputs.drugbank.drugbank_drugs"]], "drugbank_interactions() (in module pypath.inputs.drugbank)": [[358, "pypath.inputs.drugbank.drugbank_interactions"]], "drugbank_mapping() (in module pypath.inputs.drugbank)": [[359, "pypath.inputs.drugbank.drugbank_mapping"]], "drugbank_raw_interactions() (in module pypath.inputs.drugbank)": [[360, "pypath.inputs.drugbank.drugbank_raw_interactions"]], "pypath.inputs.drugcentral": [[361, "module-pypath.inputs.drugcentral"]], "drugcentral_drugs() (in module pypath.inputs.drugcentral)": [[362, "pypath.inputs.drugcentral.drugcentral_drugs"]], "drugcentral_interactions() (in module pypath.inputs.drugcentral)": [[363, "pypath.inputs.drugcentral.drugcentral_interactions"]], "drugcentral_mapping() (in module pypath.inputs.drugcentral)": [[364, "pypath.inputs.drugcentral.drugcentral_mapping"]], "pypath.inputs.ebi": [[365, "module-pypath.inputs.ebi"]], "ebi_rest() (in module pypath.inputs.ebi)": [[366, "pypath.inputs.ebi.ebi_rest"]], "pypath.inputs.elm": [[367, "module-pypath.inputs.elm"]], "elm_classes() (in module pypath.inputs.elm)": [[368, "pypath.inputs.elm.elm_classes"]], "elm_domains() (in module pypath.inputs.elm)": [[369, "pypath.inputs.elm.elm_domains"]], "elm_instances() (in module pypath.inputs.elm)": [[370, "pypath.inputs.elm.elm_instances"]], "elm_interactions() (in module pypath.inputs.elm)": [[371, "pypath.inputs.elm.elm_interactions"]], "pypath.inputs.embopress": [[372, "module-pypath.inputs.embopress"]], "embopress_supplementary() (in module pypath.inputs.embopress)": [[373, "pypath.inputs.embopress.embopress_supplementary"]], "pypath.inputs.embrace": [[374, "module-pypath.inputs.embrace"]], "embrace_annotations() (in module pypath.inputs.embrace)": [[375, "pypath.inputs.embrace.embrace_annotations"]], "embrace_interactions() (in module pypath.inputs.embrace)": [[376, "pypath.inputs.embrace.embrace_interactions"]], "embrace_raw() (in module pypath.inputs.embrace)": [[377, "pypath.inputs.embrace.embrace_raw"]], "embrace_translated() (in module pypath.inputs.embrace)": [[378, "pypath.inputs.embrace.embrace_translated"]], "pypath.inputs.encode": [[379, "module-pypath.inputs.encode"]], "encode_tf_mirna_interactions() (in module pypath.inputs.encode)": [[380, "pypath.inputs.encode.encode_tf_mirna_interactions"]], "pypath.inputs.ensembl": [[381, "module-pypath.inputs.ensembl"]], "ensembl_organisms() (in module pypath.inputs.ensembl)": [[382, "pypath.inputs.ensembl.ensembl_organisms"]], "pypath.inputs.eutils": [[383, "module-pypath.inputs.eutils"]], "esummary() (in module pypath.inputs.eutils)": [[384, "pypath.inputs.eutils.esummary"]], "pypath.inputs.exocarta": [[385, "module-pypath.inputs.exocarta"]], "get_exocarta() (in module pypath.inputs.exocarta)": [[386, "pypath.inputs.exocarta.get_exocarta"]], "get_vesiclepedia() (in module pypath.inputs.exocarta)": [[387, "pypath.inputs.exocarta.get_vesiclepedia"]], "pypath.inputs.expasy": [[388, "module-pypath.inputs.expasy"]], "expasy_enzyme_classes() (in module pypath.inputs.expasy)": [[389, "pypath.inputs.expasy.expasy_enzyme_classes"]], "expasy_enzymes() (in module pypath.inputs.expasy)": [[390, "pypath.inputs.expasy.expasy_enzymes"]], "pypath.inputs.genecards": [[391, "module-pypath.inputs.genecards"]], "genecards_datasheet() (in module pypath.inputs.genecards)": [[392, "pypath.inputs.genecards.genecards_datasheet"]], "genecards_soup() (in module pypath.inputs.genecards)": [[393, "pypath.inputs.genecards.genecards_soup"]], "genecards_summaries() (in module pypath.inputs.genecards)": [[394, "pypath.inputs.genecards.genecards_summaries"]], "get_method() (in module pypath.inputs)": [[395, "pypath.inputs.get_method"]], "pypath.inputs.go": [[396, "module-pypath.inputs.go"]], "get_go_desc() (in module pypath.inputs.go)": [[397, "pypath.inputs.go.get_go_desc"]], "get_go_quick() (in module pypath.inputs.go)": [[398, "pypath.inputs.go.get_go_quick"]], "get_goslim() (in module pypath.inputs.go)": [[399, "pypath.inputs.go.get_goslim"]], "go_ancestors() (in module pypath.inputs.go)": [[400, "pypath.inputs.go.go_ancestors"]], "go_ancestors_goose() (in module pypath.inputs.go)": [[401, "pypath.inputs.go.go_ancestors_goose"]], "go_ancestors_quickgo() (in module pypath.inputs.go)": [[402, "pypath.inputs.go.go_ancestors_quickgo"]], "go_annotations() (in module pypath.inputs.go)": [[403, "pypath.inputs.go.go_annotations"]], "go_annotations_all() (in module pypath.inputs.go)": [[404, "pypath.inputs.go.go_annotations_all"]], "go_annotations_goa() (in module pypath.inputs.go)": [[405, "pypath.inputs.go.go_annotations_goa"]], "go_annotations_goose() (in module pypath.inputs.go)": [[406, "pypath.inputs.go.go_annotations_goose"]], "go_annotations_quickgo() (in module pypath.inputs.go)": [[407, "pypath.inputs.go.go_annotations_quickgo"]], "go_annotations_solr() (in module pypath.inputs.go)": [[408, "pypath.inputs.go.go_annotations_solr"]], "go_annotations_uniprot() (in module pypath.inputs.go)": [[409, "pypath.inputs.go.go_annotations_uniprot"]], "go_descendants() (in module pypath.inputs.go)": [[410, "pypath.inputs.go.go_descendants"]], "go_descendants_goose() (in module pypath.inputs.go)": [[411, "pypath.inputs.go.go_descendants_goose"]], "go_descendants_quickgo() (in module pypath.inputs.go)": [[412, "pypath.inputs.go.go_descendants_quickgo"]], "go_descendants_to_ancestors() (in module pypath.inputs.go)": [[413, "pypath.inputs.go.go_descendants_to_ancestors"]], "go_terms() (in module pypath.inputs.go)": [[414, "pypath.inputs.go.go_terms"]], "go_terms_goose() (in module pypath.inputs.go)": [[415, "pypath.inputs.go.go_terms_goose"]], "go_terms_quickgo() (in module pypath.inputs.go)": [[416, "pypath.inputs.go.go_terms_quickgo"]], "go_terms_solr() (in module pypath.inputs.go)": [[417, "pypath.inputs.go.go_terms_solr"]], "pypath.inputs.gpcrdb": [[418, "module-pypath.inputs.gpcrdb"]], "gpcrdb_annotations() (in module pypath.inputs.gpcrdb)": [[419, "pypath.inputs.gpcrdb.gpcrdb_annotations"]], "pypath.inputs.graphviz": [[420, "module-pypath.inputs.graphviz"]], "graphviz_attrs() (in module pypath.inputs.graphviz)": [[421, "pypath.inputs.graphviz.graphviz_attrs"]], "pypath.inputs.guide2pharma": [[422, "module-pypath.inputs.guide2pharma"]], "guide2pharma_complexes() (in module pypath.inputs.guide2pharma)": [[423, "pypath.inputs.guide2pharma.guide2pharma_complexes"]], "guide2pharma_download() (in module pypath.inputs.guide2pharma)": [[424, "pypath.inputs.guide2pharma.guide2pharma_download"]], "guide2pharma_interactions() (in module pypath.inputs.guide2pharma)": [[425, "pypath.inputs.guide2pharma.guide2pharma_interactions"]], "pypath.inputs.gutmgene": [[426, "module-pypath.inputs.gutmgene"]], "gutmgeneannotation (class in pypath.inputs.gutmgene)": [[427, "pypath.inputs.gutmgene.GutmgeneAnnotation"]], "__init__() (pypath.inputs.gutmgene.gutmgeneannotation method)": [[427, "pypath.inputs.gutmgene.GutmgeneAnnotation.__init__"]], "classification (pypath.inputs.gutmgene.gutmgeneannotation attribute)": [[427, "pypath.inputs.gutmgene.GutmgeneAnnotation.classification"]], "count() (pypath.inputs.gutmgene.gutmgeneannotation method)": [[427, "pypath.inputs.gutmgene.GutmgeneAnnotation.count"]], "effect (pypath.inputs.gutmgene.gutmgeneannotation attribute)": [[427, "pypath.inputs.gutmgene.GutmgeneAnnotation.effect"]], "gut_microbiota_id (pypath.inputs.gutmgene.gutmgeneannotation attribute)": [[427, "pypath.inputs.gutmgene.GutmgeneAnnotation.gut_microbiota_id"]], "index() (pypath.inputs.gutmgene.gutmgeneannotation method)": [[427, "pypath.inputs.gutmgene.GutmgeneAnnotation.index"]], "microbe_ncbi_tax_id (pypath.inputs.gutmgene.gutmgeneannotation attribute)": [[427, "pypath.inputs.gutmgene.GutmgeneAnnotation.microbe_ncbi_tax_id"]], "microbe_taxon (pypath.inputs.gutmgene.gutmgeneannotation attribute)": [[427, "pypath.inputs.gutmgene.GutmgeneAnnotation.microbe_taxon"]], "throughput (pypath.inputs.gutmgene.gutmgeneannotation attribute)": [[427, "pypath.inputs.gutmgene.GutmgeneAnnotation.throughput"]], "gutmgeneraw (class in pypath.inputs.gutmgene)": [[428, "pypath.inputs.gutmgene.GutmgeneRaw"]], "__init__() (pypath.inputs.gutmgene.gutmgeneraw method)": [[428, "pypath.inputs.gutmgene.GutmgeneRaw.__init__"]], "classification (pypath.inputs.gutmgene.gutmgeneraw attribute)": [[428, "pypath.inputs.gutmgene.GutmgeneRaw.classification"]], "count() (pypath.inputs.gutmgene.gutmgeneraw method)": [[428, "pypath.inputs.gutmgene.GutmgeneRaw.count"]], "effect (pypath.inputs.gutmgene.gutmgeneraw attribute)": [[428, "pypath.inputs.gutmgene.GutmgeneRaw.effect"]], "entrez (pypath.inputs.gutmgene.gutmgeneraw attribute)": [[428, "pypath.inputs.gutmgene.GutmgeneRaw.entrez"]], "genesymbol (pypath.inputs.gutmgene.gutmgeneraw attribute)": [[428, "pypath.inputs.gutmgene.GutmgeneRaw.genesymbol"]], "gut_microbiota_id (pypath.inputs.gutmgene.gutmgeneraw attribute)": [[428, "pypath.inputs.gutmgene.GutmgeneRaw.gut_microbiota_id"]], "index() (pypath.inputs.gutmgene.gutmgeneraw method)": [[428, "pypath.inputs.gutmgene.GutmgeneRaw.index"]], "microbe_ncbi_tax_id (pypath.inputs.gutmgene.gutmgeneraw attribute)": [[428, "pypath.inputs.gutmgene.GutmgeneRaw.microbe_ncbi_tax_id"]], "microbe_taxon (pypath.inputs.gutmgene.gutmgeneraw attribute)": [[428, "pypath.inputs.gutmgene.GutmgeneRaw.microbe_taxon"]], "throughput (pypath.inputs.gutmgene.gutmgeneraw attribute)": [[428, "pypath.inputs.gutmgene.GutmgeneRaw.throughput"]], "gutmgene_annotations() (in module pypath.inputs.gutmgene)": [[429, "pypath.inputs.gutmgene.gutmgene_annotations"]], "gutmgene_raw() (in module pypath.inputs.gutmgene)": [[430, "pypath.inputs.gutmgene.gutmgene_raw"]], "pypath.inputs.havugimana": [[431, "module-pypath.inputs.havugimana"]], "get_havugimana() (in module pypath.inputs.havugimana)": [[432, "pypath.inputs.havugimana.get_havugimana"]], "havugimana_complexes() (in module pypath.inputs.havugimana)": [[433, "pypath.inputs.havugimana.havugimana_complexes"]], "pypath.inputs.hgnc": [[434, "module-pypath.inputs.hgnc"]], "hgnc_genegroups() (in module pypath.inputs.hgnc)": [[435, "pypath.inputs.hgnc.hgnc_genegroups"]], "pypath.inputs.hippie": [[436, "module-pypath.inputs.hippie"]], "hippie_interactions() (in module pypath.inputs.hippie)": [[437, "pypath.inputs.hippie.hippie_interactions"]], "pypath.inputs.hmdb": [[438, "module-pypath.inputs.hmdb"]], "pypath.inputs.hmdb.common": [[439, "module-pypath.inputs.hmdb.common"]], "iter() (in module pypath.inputs.hmdb.common)": [[440, "pypath.inputs.hmdb.common.iter"]], "mapping() (in module pypath.inputs.hmdb.common)": [[441, "pypath.inputs.hmdb.common.mapping"]], "raw() (in module pypath.inputs.hmdb.common)": [[442, "pypath.inputs.hmdb.common.raw"]], "table() (in module pypath.inputs.hmdb.common)": [[443, "pypath.inputs.hmdb.common.table"]], "pypath.inputs.hmdb.metabolites": [[444, "module-pypath.inputs.hmdb.metabolites"]], "iter() (in module pypath.inputs.hmdb.metabolites)": [[445, "pypath.inputs.hmdb.metabolites.iter"]], "mapping() (in module pypath.inputs.hmdb.metabolites)": [[446, "pypath.inputs.hmdb.metabolites.mapping"]], "raw() (in module pypath.inputs.hmdb.metabolites)": [[447, "pypath.inputs.hmdb.metabolites.raw"]], "table() (in module pypath.inputs.hmdb.metabolites)": [[448, "pypath.inputs.hmdb.metabolites.table"]], "pypath.inputs.hmdb.proteins": [[449, "module-pypath.inputs.hmdb.proteins"]], "iter() (in module pypath.inputs.hmdb.proteins)": [[450, "pypath.inputs.hmdb.proteins.iter"]], "mapping() (in module pypath.inputs.hmdb.proteins)": [[451, "pypath.inputs.hmdb.proteins.mapping"]], "raw() (in module pypath.inputs.hmdb.proteins)": [[452, "pypath.inputs.hmdb.proteins.raw"]], "table() (in module pypath.inputs.hmdb.proteins)": [[453, "pypath.inputs.hmdb.proteins.table"]], "pypath.inputs.hmdb.schema": [[454, "module-pypath.inputs.hmdb.schema"]], "pypath.inputs.hmdb.schema.common": [[455, "module-pypath.inputs.hmdb.schema.common"]], "field (class in pypath.inputs.hmdb.schema.common)": [[456, "pypath.inputs.hmdb.schema.common.Field"]], "__init__() (pypath.inputs.hmdb.schema.common.field method)": [[456, "pypath.inputs.hmdb.schema.common.Field.__init__"]], "pypath.inputs.hmdb.schema.metabolites": [[457, "module-pypath.inputs.hmdb.schema.metabolites"]], "pypath.inputs.hmdb.schema.proteins": [[458, "module-pypath.inputs.hmdb.schema.proteins"]], "pypath.inputs.hmdb.structures": [[459, "module-pypath.inputs.hmdb.structures"]], "sdf() (in module pypath.inputs.hmdb.structures)": [[460, "pypath.inputs.hmdb.structures.sdf"]], "pypath.inputs.hmdb.visual": [[461, "module-pypath.inputs.hmdb.visual"]], "show_structure() (in module pypath.inputs.hmdb.visual)": [[462, "pypath.inputs.hmdb.visual.show_structure"]], "structure_svg() (in module pypath.inputs.hmdb.visual)": [[463, "pypath.inputs.hmdb.visual.structure_svg"]], "pypath.inputs.hmdb.xml": [[464, "module-pypath.inputs.hmdb.xml"]], "hmdb_xml() (in module pypath.inputs.hmdb.xml)": [[465, "pypath.inputs.hmdb.xml.hmdb_xml"]], "pypath.inputs.homologene": [[466, "module-pypath.inputs.homologene"]], "get_homologene() (in module pypath.inputs.homologene)": [[467, "pypath.inputs.homologene.get_homologene"]], "homologene_dict() (in module pypath.inputs.homologene)": [[468, "pypath.inputs.homologene.homologene_dict"]], "homologene_uniprot_dict() (in module pypath.inputs.homologene)": [[469, "pypath.inputs.homologene.homologene_uniprot_dict"]], "pypath.inputs.hpmr": [[470, "module-pypath.inputs.hpmr"]], "hpmrinteraction (class in pypath.inputs.hpmr)": [[471, "pypath.inputs.hpmr.HpmrInteraction"]], "__init__() (pypath.inputs.hpmr.hpmrinteraction method)": [[471, "pypath.inputs.hpmr.HpmrInteraction.__init__"]], "count() (pypath.inputs.hpmr.hpmrinteraction method)": [[471, "pypath.inputs.hpmr.HpmrInteraction.count"]], "index() (pypath.inputs.hpmr.hpmrinteraction method)": [[471, "pypath.inputs.hpmr.HpmrInteraction.index"]], "partner (pypath.inputs.hpmr.hpmrinteraction attribute)": [[471, "pypath.inputs.hpmr.HpmrInteraction.partner"]], "partner_role (pypath.inputs.hpmr.hpmrinteraction attribute)": [[471, "pypath.inputs.hpmr.HpmrInteraction.partner_role"]], "receptor (pypath.inputs.hpmr.hpmrinteraction attribute)": [[471, "pypath.inputs.hpmr.HpmrInteraction.receptor"]], "references (pypath.inputs.hpmr.hpmrinteraction attribute)": [[471, "pypath.inputs.hpmr.HpmrInteraction.references"]], "unambiguous (pypath.inputs.hpmr.hpmrinteraction attribute)": [[471, "pypath.inputs.hpmr.HpmrInteraction.unambiguous"]], "get_hpmr() (in module pypath.inputs.hpmr)": [[472, "pypath.inputs.hpmr.get_hpmr"]], "hpmr_annotations() (in module pypath.inputs.hpmr)": [[473, "pypath.inputs.hpmr.hpmr_annotations"]], "hpmr_complexes() (in module pypath.inputs.hpmr)": [[474, "pypath.inputs.hpmr.hpmr_complexes"]], "hpmr_interactions() (in module pypath.inputs.hpmr)": [[475, "pypath.inputs.hpmr.hpmr_interactions"]], "pypath.inputs.hpo": [[476, "module-pypath.inputs.hpo"]], "hpo_annotations() (in module pypath.inputs.hpo)": [[477, "pypath.inputs.hpo.hpo_annotations"]], "hpo_diseases() (in module pypath.inputs.hpo)": [[478, "pypath.inputs.hpo.hpo_diseases"]], "hpo_ontology() (in module pypath.inputs.hpo)": [[479, "pypath.inputs.hpo.hpo_ontology"]], "hpo_terms() (in module pypath.inputs.hpo)": [[480, "pypath.inputs.hpo.hpo_terms"]], "pypath.inputs.hprd": [[481, "module-pypath.inputs.hprd"]], "get_hprd() (in module pypath.inputs.hprd)": [[482, "pypath.inputs.hprd.get_hprd"]], "hprd_enzyme_substrate() (in module pypath.inputs.hprd)": [[483, "pypath.inputs.hprd.hprd_enzyme_substrate"]], "hprd_interactions() (in module pypath.inputs.hprd)": [[484, "pypath.inputs.hprd.hprd_interactions"]], "hprd_interactions_htp() (in module pypath.inputs.hprd)": [[485, "pypath.inputs.hprd.hprd_interactions_htp"]], "pypath.inputs.htri": [[486, "module-pypath.inputs.htri"]], "htri_interactions() (in module pypath.inputs.htri)": [[487, "pypath.inputs.htri.htri_interactions"]], "pypath.inputs.humancellmap": [[488, "module-pypath.inputs.humancellmap"]], "humancellmap_annotations() (in module pypath.inputs.humancellmap)": [[489, "pypath.inputs.humancellmap.humancellmap_annotations"]], "pypath.inputs.humap": [[490, "module-pypath.inputs.humap"]], "humap2_complexes() (in module pypath.inputs.humap)": [[491, "pypath.inputs.humap.humap2_complexes"]], "humap_complexes() (in module pypath.inputs.humap)": [[492, "pypath.inputs.humap.humap_complexes"]], "pypath.inputs.humsavar": [[493, "module-pypath.inputs.humsavar"]], "uniprot_variants() (in module pypath.inputs.humsavar)": [[494, "pypath.inputs.humsavar.uniprot_variants"]], "pypath.inputs.huri": [[495, "module-pypath.inputs.huri"]], "hi_i_interactions() (in module pypath.inputs.huri)": [[496, "pypath.inputs.huri.hi_i_interactions"]], "hi_ii_interactions() (in module pypath.inputs.huri)": [[497, "pypath.inputs.huri.hi_ii_interactions"]], "hi_iii_old() (in module pypath.inputs.huri)": [[498, "pypath.inputs.huri.hi_iii_old"]], "hi_union_interactions() (in module pypath.inputs.huri)": [[499, "pypath.inputs.huri.hi_union_interactions"]], "huri_interactions() (in module pypath.inputs.huri)": [[500, "pypath.inputs.huri.huri_interactions"]], "lit_bm_13_interactions() (in module pypath.inputs.huri)": [[501, "pypath.inputs.huri.lit_bm_13_interactions"]], "lit_bm_17_interactions() (in module pypath.inputs.huri)": [[502, "pypath.inputs.huri.lit_bm_17_interactions"]], "lit_bm_interactions() (in module pypath.inputs.huri)": [[503, "pypath.inputs.huri.lit_bm_interactions"]], "rolland_hi_ii_14() (in module pypath.inputs.huri)": [[504, "pypath.inputs.huri.rolland_hi_ii_14"]], "vidal_hi_iii_old() (in module pypath.inputs.huri)": [[505, "pypath.inputs.huri.vidal_hi_iii_old"]], "yang2016_interactions() (in module pypath.inputs.huri)": [[506, "pypath.inputs.huri.yang2016_interactions"]], "yu2011_interactions() (in module pypath.inputs.huri)": [[507, "pypath.inputs.huri.yu2011_interactions"]], "pypath.inputs.i3d": [[508, "module-pypath.inputs.i3d"]], "get_i3d() (in module pypath.inputs.i3d)": [[509, "pypath.inputs.i3d.get_i3d"]], "pypath.inputs.icellnet": [[510, "module-pypath.inputs.icellnet"]], "icellnetrecord (class in pypath.inputs.icellnet)": [[511, "pypath.inputs.icellnet.IcellnetRecord"]], "__init__() (pypath.inputs.icellnet.icellnetrecord method)": [[511, "pypath.inputs.icellnet.IcellnetRecord.__init__"]], "classification (pypath.inputs.icellnet.icellnetrecord attribute)": [[511, "pypath.inputs.icellnet.IcellnetRecord.classification"]], "count() (pypath.inputs.icellnet.icellnetrecord method)": [[511, "pypath.inputs.icellnet.IcellnetRecord.count"]], "family (pypath.inputs.icellnet.icellnetrecord attribute)": [[511, "pypath.inputs.icellnet.IcellnetRecord.family"]], "index() (pypath.inputs.icellnet.icellnetrecord method)": [[511, "pypath.inputs.icellnet.IcellnetRecord.index"]], "ligand (pypath.inputs.icellnet.icellnetrecord attribute)": [[511, "pypath.inputs.icellnet.IcellnetRecord.ligand"]], "receptor (pypath.inputs.icellnet.icellnetrecord attribute)": [[511, "pypath.inputs.icellnet.IcellnetRecord.receptor"]], "references (pypath.inputs.icellnet.icellnetrecord attribute)": [[511, "pypath.inputs.icellnet.IcellnetRecord.references"]], "resources (pypath.inputs.icellnet.icellnetrecord attribute)": [[511, "pypath.inputs.icellnet.IcellnetRecord.resources"]], "subfamily (pypath.inputs.icellnet.icellnetrecord attribute)": [[511, "pypath.inputs.icellnet.IcellnetRecord.subfamily"]], "icellnet_annotations() (in module pypath.inputs.icellnet)": [[512, "pypath.inputs.icellnet.icellnet_annotations"]], "icellnet_complexes() (in module pypath.inputs.icellnet)": [[513, "pypath.inputs.icellnet.icellnet_complexes"]], "icellnet_interactions() (in module pypath.inputs.icellnet)": [[514, "pypath.inputs.icellnet.icellnet_interactions"]], "pypath.inputs.ielm": [[515, "module-pypath.inputs.ielm"]], "get_ielm() (in module pypath.inputs.ielm)": [[516, "pypath.inputs.ielm.get_ielm"]], "get_ielm_huge() (in module pypath.inputs.ielm)": [[517, "pypath.inputs.ielm.get_ielm_huge"]], "pypath.inputs.imweb": [[518, "module-pypath.inputs.imweb"]], "get_imweb() (in module pypath.inputs.imweb)": [[519, "pypath.inputs.imweb.get_imweb"]], "get_imweb_req() (in module pypath.inputs.imweb)": [[520, "pypath.inputs.imweb.get_imweb_req"]], "pypath.inputs.innatedb": [[521, "module-pypath.inputs.innatedb"]], "innatedb_interactions() (in module pypath.inputs.innatedb)": [[522, "pypath.inputs.innatedb.innatedb_interactions"]], "pypath.inputs.instruct": [[523, "module-pypath.inputs.instruct"]], "get_instruct() (in module pypath.inputs.instruct)": [[524, "pypath.inputs.instruct.get_instruct"]], "get_instruct_offsets() (in module pypath.inputs.instruct)": [[525, "pypath.inputs.instruct.get_instruct_offsets"]], "pypath.inputs.intact": [[526, "module-pypath.inputs.intact"]], "intact_interactions() (in module pypath.inputs.intact)": [[527, "pypath.inputs.intact.intact_interactions"]], "pypath.inputs.integrins": [[528, "module-pypath.inputs.integrins"]], "get_integrins() (in module pypath.inputs.integrins)": [[529, "pypath.inputs.integrins.get_integrins"]], "pypath.inputs.interpro": [[530, "module-pypath.inputs.interpro"]], "interpro2go_annotations() (in module pypath.inputs.interpro)": [[531, "pypath.inputs.interpro.interpro2go_annotations"]], "interpro_annotations() (in module pypath.inputs.interpro)": [[532, "pypath.inputs.interpro.interpro_annotations"]], "interpro_entries() (in module pypath.inputs.interpro)": [[533, "pypath.inputs.interpro.interpro_entries"]], "interpro_xrefs() (in module pypath.inputs.interpro)": [[534, "pypath.inputs.interpro.interpro_xrefs"]], "pypath.inputs.intogen": [[535, "module-pypath.inputs.intogen"]], "intogen_annotations() (in module pypath.inputs.intogen)": [[536, "pypath.inputs.intogen.intogen_annotations"]], "pypath.inputs.ipi": [[537, "module-pypath.inputs.ipi"]], "ipi_uniprot() (in module pypath.inputs.ipi)": [[538, "pypath.inputs.ipi.ipi_uniprot"]], "pypath.inputs.iptmnet": [[539, "module-pypath.inputs.iptmnet"]], "iptmnetinteraction (class in pypath.inputs.iptmnet)": [[540, "pypath.inputs.iptmnet.IptmnetInteraction"]], "__init__() (pypath.inputs.iptmnet.iptmnetinteraction method)": [[540, "pypath.inputs.iptmnet.IptmnetInteraction.__init__"]], "count() (pypath.inputs.iptmnet.iptmnetinteraction method)": [[540, "pypath.inputs.iptmnet.IptmnetInteraction.count"]], "enzyme (pypath.inputs.iptmnet.iptmnetinteraction attribute)": [[540, "pypath.inputs.iptmnet.IptmnetInteraction.enzyme"]], "enzyme_isoform (pypath.inputs.iptmnet.iptmnetinteraction attribute)": [[540, "pypath.inputs.iptmnet.IptmnetInteraction.enzyme_isoform"]], "index() (pypath.inputs.iptmnet.iptmnetinteraction method)": [[540, "pypath.inputs.iptmnet.IptmnetInteraction.index"]], "ptm_type (pypath.inputs.iptmnet.iptmnetinteraction attribute)": [[540, "pypath.inputs.iptmnet.IptmnetInteraction.ptm_type"]], "references (pypath.inputs.iptmnet.iptmnetinteraction attribute)": [[540, "pypath.inputs.iptmnet.IptmnetInteraction.references"]], "resaa (pypath.inputs.iptmnet.iptmnetinteraction attribute)": [[540, "pypath.inputs.iptmnet.IptmnetInteraction.resaa"]], "resnum (pypath.inputs.iptmnet.iptmnetinteraction attribute)": [[540, "pypath.inputs.iptmnet.IptmnetInteraction.resnum"]], "score (pypath.inputs.iptmnet.iptmnetinteraction attribute)": [[540, "pypath.inputs.iptmnet.IptmnetInteraction.score"]], "substrate (pypath.inputs.iptmnet.iptmnetinteraction attribute)": [[540, "pypath.inputs.iptmnet.IptmnetInteraction.substrate"]], "substrate_isoform (pypath.inputs.iptmnet.iptmnetinteraction attribute)": [[540, "pypath.inputs.iptmnet.IptmnetInteraction.substrate_isoform"]], "iptmnet_interactions() (in module pypath.inputs.iptmnet)": [[541, "pypath.inputs.iptmnet.iptmnet_interactions"]], "pypath.inputs.italk": [[542, "module-pypath.inputs.italk"]], "italk_annotations() (in module pypath.inputs.italk)": [[543, "pypath.inputs.italk.italk_annotations"]], "italk_interactions() (in module pypath.inputs.italk)": [[544, "pypath.inputs.italk.italk_interactions"]], "italk_raw() (in module pypath.inputs.italk)": [[545, "pypath.inputs.italk.italk_raw"]], "pypath.inputs.kea": [[546, "module-pypath.inputs.kea"]], "kea_enzyme_substrate() (in module pypath.inputs.kea)": [[547, "pypath.inputs.kea.kea_enzyme_substrate"]], "kea_interactions() (in module pypath.inputs.kea)": [[548, "pypath.inputs.kea.kea_interactions"]], "pypath.inputs.kegg": [[549, "module-pypath.inputs.kegg"]], "keggpathway (class in pypath.inputs.kegg)": [[550, "pypath.inputs.kegg.KeggPathway"]], "__init__() (pypath.inputs.kegg.keggpathway method)": [[550, "pypath.inputs.kegg.KeggPathway.__init__"]], "count() (pypath.inputs.kegg.keggpathway method)": [[550, "pypath.inputs.kegg.KeggPathway.count"]], "index() (pypath.inputs.kegg.keggpathway method)": [[550, "pypath.inputs.kegg.KeggPathway.index"]], "pathway (pypath.inputs.kegg.keggpathway attribute)": [[550, "pypath.inputs.kegg.KeggPathway.pathway"]], "kegg_dbget() (in module pypath.inputs.kegg)": [[551, "pypath.inputs.kegg.kegg_dbget"]], "kegg_interactions() (in module pypath.inputs.kegg)": [[552, "pypath.inputs.kegg.kegg_interactions"]], "kegg_medicus() (in module pypath.inputs.kegg)": [[553, "pypath.inputs.kegg.kegg_medicus"]], "kegg_medicus_complexes() (in module pypath.inputs.kegg)": [[554, "pypath.inputs.kegg.kegg_medicus_complexes"]], "kegg_medicus_interactions() (in module pypath.inputs.kegg)": [[555, "pypath.inputs.kegg.kegg_medicus_interactions"]], "kegg_pathway_annotations() (in module pypath.inputs.kegg)": [[556, "pypath.inputs.kegg.kegg_pathway_annotations"]], "kegg_pathway_annotations_pathwaycommons() (in module pypath.inputs.kegg)": [[557, "pypath.inputs.kegg.kegg_pathway_annotations_pathwaycommons"]], "kegg_pathways() (in module pypath.inputs.kegg)": [[558, "pypath.inputs.kegg.kegg_pathways"]], "pypath.inputs.kegg_api": [[559, "module-pypath.inputs.kegg_api"]], "disease_to_drug() (in module pypath.inputs.kegg_api)": [[560, "pypath.inputs.kegg_api.disease_to_drug"]], "disease_to_gene() (in module pypath.inputs.kegg_api)": [[561, "pypath.inputs.kegg_api.disease_to_gene"]], "disease_to_pathway() (in module pypath.inputs.kegg_api)": [[562, "pypath.inputs.kegg_api.disease_to_pathway"]], "drug_to_disease() (in module pypath.inputs.kegg_api)": [[563, "pypath.inputs.kegg_api.drug_to_disease"]], "drug_to_drug() (in module pypath.inputs.kegg_api)": [[564, "pypath.inputs.kegg_api.drug_to_drug"]], "drug_to_gene() (in module pypath.inputs.kegg_api)": [[565, "pypath.inputs.kegg_api.drug_to_gene"]], "drug_to_pathway() (in module pypath.inputs.kegg_api)": [[566, "pypath.inputs.kegg_api.drug_to_pathway"]], "gene_to_disease() (in module pypath.inputs.kegg_api)": [[567, "pypath.inputs.kegg_api.gene_to_disease"]], "gene_to_drug() (in module pypath.inputs.kegg_api)": [[568, "pypath.inputs.kegg_api.gene_to_drug"]], "gene_to_pathway() (in module pypath.inputs.kegg_api)": [[569, "pypath.inputs.kegg_api.gene_to_pathway"]], "kegg_drug_to_chebi() (in module pypath.inputs.kegg_api)": [[570, "pypath.inputs.kegg_api.kegg_drug_to_chebi"]], "kegg_gene_to_ncbi_geneid() (in module pypath.inputs.kegg_api)": [[571, "pypath.inputs.kegg_api.kegg_gene_to_ncbi_geneid"]], "kegg_gene_to_uniprot() (in module pypath.inputs.kegg_api)": [[572, "pypath.inputs.kegg_api.kegg_gene_to_uniprot"]], "pathway_to_disease() (in module pypath.inputs.kegg_api)": [[573, "pypath.inputs.kegg_api.pathway_to_disease"]], "pathway_to_drug() (in module pypath.inputs.kegg_api)": [[574, "pypath.inputs.kegg_api.pathway_to_drug"]], "pathway_to_gene() (in module pypath.inputs.kegg_api)": [[575, "pypath.inputs.kegg_api.pathway_to_gene"]], "pypath.inputs.kinasedotcom": [[576, "module-pypath.inputs.kinasedotcom"]], "kinasedotcom_annotations() (in module pypath.inputs.kinasedotcom)": [[577, "pypath.inputs.kinasedotcom.kinasedotcom_annotations"]], "pypath.inputs.kirouac2010": [[578, "module-pypath.inputs.kirouac2010"]], "kirouac2010_interactions() (in module pypath.inputs.kirouac2010)": [[579, "pypath.inputs.kirouac2010.kirouac2010_interactions"]], "pypath.inputs.lambert2018": [[580, "module-pypath.inputs.lambert2018"]], "lambert2018_annotations() (in module pypath.inputs.lambert2018)": [[581, "pypath.inputs.lambert2018.lambert2018_annotations"]], "lambert2018_s1_raw() (in module pypath.inputs.lambert2018)": [[582, "pypath.inputs.lambert2018.lambert2018_s1_raw"]], "pypath.inputs.laudanna": [[583, "module-pypath.inputs.laudanna"]], "laudanna_directions() (in module pypath.inputs.laudanna)": [[584, "pypath.inputs.laudanna.laudanna_directions"]], "laudanna_effects() (in module pypath.inputs.laudanna)": [[585, "pypath.inputs.laudanna.laudanna_effects"]], "pypath.inputs.li2012": [[586, "module-pypath.inputs.li2012"]], "get_li2012() (in module pypath.inputs.li2012)": [[587, "pypath.inputs.li2012.get_li2012"]], "li2012_dmi() (in module pypath.inputs.li2012)": [[588, "pypath.inputs.li2012.li2012_dmi"]], "li2012_enzyme_substrate() (in module pypath.inputs.li2012)": [[589, "pypath.inputs.li2012.li2012_enzyme_substrate"]], "li2012_interactions() (in module pypath.inputs.li2012)": [[590, "pypath.inputs.li2012.li2012_interactions"]], "pypath.inputs.lincs": [[591, "module-pypath.inputs.lincs"]], "lincs_compounds() (in module pypath.inputs.lincs)": [[592, "pypath.inputs.lincs.lincs_compounds"]], "pypath.inputs.lmpid": [[593, "module-pypath.inputs.lmpid"]], "lmpid_dmi() (in module pypath.inputs.lmpid)": [[594, "pypath.inputs.lmpid.lmpid_dmi"]], "lmpid_interactions() (in module pypath.inputs.lmpid)": [[595, "pypath.inputs.lmpid.lmpid_interactions"]], "load_lmpid() (in module pypath.inputs.lmpid)": [[596, "pypath.inputs.lmpid.load_lmpid"]], "pypath.inputs.lncdisease": [[597, "module-pypath.inputs.lncdisease"]], "lncdisease_interactions() (in module pypath.inputs.lncdisease)": [[598, "pypath.inputs.lncdisease.lncdisease_interactions"]], "pypath.inputs.lncrnadb": [[599, "module-pypath.inputs.lncrnadb"]], "lncrnadb_interactions() (in module pypath.inputs.lncrnadb)": [[600, "pypath.inputs.lncrnadb.lncrnadb_interactions"]], "pypath.inputs.locate": [[601, "module-pypath.inputs.locate"]], "locate_localizations() (in module pypath.inputs.locate)": [[602, "pypath.inputs.locate.locate_localizations"]], "pypath.inputs.lrdb": [[603, "module-pypath.inputs.lrdb"]], "lrdbannotation (class in pypath.inputs.lrdb)": [[604, "pypath.inputs.lrdb.LrdbAnnotation"]], "__init__() (pypath.inputs.lrdb.lrdbannotation method)": [[604, "pypath.inputs.lrdb.LrdbAnnotation.__init__"]], "cell_type (pypath.inputs.lrdb.lrdbannotation attribute)": [[604, "pypath.inputs.lrdb.LrdbAnnotation.cell_type"]], "count() (pypath.inputs.lrdb.lrdbannotation method)": [[604, "pypath.inputs.lrdb.LrdbAnnotation.count"]], "index() (pypath.inputs.lrdb.lrdbannotation method)": [[604, "pypath.inputs.lrdb.LrdbAnnotation.index"]], "references (pypath.inputs.lrdb.lrdbannotation attribute)": [[604, "pypath.inputs.lrdb.LrdbAnnotation.references"]], "role (pypath.inputs.lrdb.lrdbannotation attribute)": [[604, "pypath.inputs.lrdb.LrdbAnnotation.role"]], "sources (pypath.inputs.lrdb.lrdbannotation attribute)": [[604, "pypath.inputs.lrdb.LrdbAnnotation.sources"]], "lrdb_annotations() (in module pypath.inputs.lrdb)": [[605, "pypath.inputs.lrdb.lrdb_annotations"]], "lrdb_interactions() (in module pypath.inputs.lrdb)": [[606, "pypath.inputs.lrdb.lrdb_interactions"]], "pypath.inputs.macrophage": [[607, "module-pypath.inputs.macrophage"]], "macrophage_interactions() (in module pypath.inputs.macrophage)": [[608, "pypath.inputs.macrophage.macrophage_interactions"]], "pypath.inputs.main": [[609, "module-pypath.inputs.main"]], "pypath.inputs.matrisome": [[610, "module-pypath.inputs.matrisome"]], "matrisome_annotations() (in module pypath.inputs.matrisome)": [[611, "pypath.inputs.matrisome.matrisome_annotations"]], "pypath.inputs.matrixdb": [[612, "module-pypath.inputs.matrixdb"]], "matrixdb_annotations() (in module pypath.inputs.matrixdb)": [[613, "pypath.inputs.matrixdb.matrixdb_annotations"]], "matrixdb_ecm_proteins() (in module pypath.inputs.matrixdb)": [[614, "pypath.inputs.matrixdb.matrixdb_ecm_proteins"]], "matrixdb_interactions() (in module pypath.inputs.matrixdb)": [[615, "pypath.inputs.matrixdb.matrixdb_interactions"]], "matrixdb_membrane_proteins() (in module pypath.inputs.matrixdb)": [[616, "pypath.inputs.matrixdb.matrixdb_membrane_proteins"]], "matrixdb_secreted_proteins() (in module pypath.inputs.matrixdb)": [[617, "pypath.inputs.matrixdb.matrixdb_secreted_proteins"]], "pypath.inputs.mcam": [[618, "module-pypath.inputs.mcam"]], "mcam_cell_adhesion_molecules() (in module pypath.inputs.mcam)": [[619, "pypath.inputs.mcam.mcam_cell_adhesion_molecules"]], "pypath.inputs.membranome": [[620, "module-pypath.inputs.membranome"]], "membranome_annotations() (in module pypath.inputs.membranome)": [[621, "pypath.inputs.membranome.membranome_annotations"]], "pypath.inputs.mimp": [[622, "module-pypath.inputs.mimp"]], "get_kinase_class() (in module pypath.inputs.mimp)": [[623, "pypath.inputs.mimp.get_kinase_class"]], "mimp_enzyme_substrate() (in module pypath.inputs.mimp)": [[624, "pypath.inputs.mimp.mimp_enzyme_substrate"]], "mimp_interactions() (in module pypath.inputs.mimp)": [[625, "pypath.inputs.mimp.mimp_interactions"]], "pypath.inputs.mir2disease": [[626, "module-pypath.inputs.mir2disease"]], "mir2disease_interactions() (in module pypath.inputs.mir2disease)": [[627, "pypath.inputs.mir2disease.mir2disease_interactions"]], "pypath.inputs.mirbase": [[628, "module-pypath.inputs.mirbase"]], "get_mirbase_aliases() (in module pypath.inputs.mirbase)": [[629, "pypath.inputs.mirbase.get_mirbase_aliases"]], "mirbase_ids() (in module pypath.inputs.mirbase)": [[630, "pypath.inputs.mirbase.mirbase_ids"]], "mirbase_mature() (in module pypath.inputs.mirbase)": [[631, "pypath.inputs.mirbase.mirbase_mature"]], "mirbase_mature_all() (in module pypath.inputs.mirbase)": [[632, "pypath.inputs.mirbase.mirbase_mature_all"]], "mirbase_precursor() (in module pypath.inputs.mirbase)": [[633, "pypath.inputs.mirbase.mirbase_precursor"]], "mirbase_precursor_all() (in module pypath.inputs.mirbase)": [[634, "pypath.inputs.mirbase.mirbase_precursor_all"]], "mirbase_precursor_to_mature() (in module pypath.inputs.mirbase)": [[635, "pypath.inputs.mirbase.mirbase_precursor_to_mature"]], "pypath.inputs.mirdeathdb": [[636, "module-pypath.inputs.mirdeathdb"]], "mirdeathdb_interactions() (in module pypath.inputs.mirdeathdb)": [[637, "pypath.inputs.mirdeathdb.mirdeathdb_interactions"]], "pypath.inputs.mirecords": [[638, "module-pypath.inputs.mirecords"]], "mirecords_interactions() (in module pypath.inputs.mirecords)": [[639, "pypath.inputs.mirecords.mirecords_interactions"]], "pypath.inputs.mirtarbase": [[640, "module-pypath.inputs.mirtarbase"]], "mirtarbase_interactions() (in module pypath.inputs.mirtarbase)": [[641, "pypath.inputs.mirtarbase.mirtarbase_interactions"]], "pypath.inputs.mitab": [[642, "module-pypath.inputs.mitab"]], "mitab_field_list() (in module pypath.inputs.mitab)": [[643, "pypath.inputs.mitab.mitab_field_list"]], "mitab_field_uniprot() (in module pypath.inputs.mitab)": [[644, "pypath.inputs.mitab.mitab_field_uniprot"]], "pypath.inputs.mppi": [[645, "module-pypath.inputs.mppi"]], "mppi_interactions() (in module pypath.inputs.mppi)": [[646, "pypath.inputs.mppi.mppi_interactions"]], "pypath.inputs.msigdb": [[647, "module-pypath.inputs.msigdb"]], "msigdb_annotations() (in module pypath.inputs.msigdb)": [[648, "pypath.inputs.msigdb.msigdb_annotations"]], "msigdb_download() (in module pypath.inputs.msigdb)": [[649, "pypath.inputs.msigdb.msigdb_download"]], "msigdb_download_collections() (in module pypath.inputs.msigdb)": [[650, "pypath.inputs.msigdb.msigdb_download_collections"]], "pypath.inputs.ncrdeathdb": [[651, "module-pypath.inputs.ncrdeathdb"]], "ncrdeathdb_interactions() (in module pypath.inputs.ncrdeathdb)": [[652, "pypath.inputs.ncrdeathdb.ncrdeathdb_interactions"]], "pypath.inputs.negatome": [[653, "module-pypath.inputs.negatome"]], "negatome_interactions() (in module pypath.inputs.negatome)": [[654, "pypath.inputs.negatome.negatome_interactions"]], "pypath.inputs.netbiol": [[655, "module-pypath.inputs.netbiol"]], "arn_interactions() (in module pypath.inputs.netbiol)": [[656, "pypath.inputs.netbiol.arn_interactions"]], "nrf2ome_interactions() (in module pypath.inputs.netbiol)": [[657, "pypath.inputs.netbiol.nrf2ome_interactions"]], "pypath.inputs.netpath": [[658, "module-pypath.inputs.netpath"]], "netpath_interactions() (in module pypath.inputs.netpath)": [[659, "pypath.inputs.netpath.netpath_interactions"]], "netpath_names() (in module pypath.inputs.netpath)": [[660, "pypath.inputs.netpath.netpath_names"]], "netpath_pathway_annotations() (in module pypath.inputs.netpath)": [[661, "pypath.inputs.netpath.netpath_pathway_annotations"]], "pypath.inputs.offsides": [[662, "module-pypath.inputs.offsides"]], "offsides_side_effects() (in module pypath.inputs.offsides)": [[663, "pypath.inputs.offsides.offsides_side_effects"]], "pypath.inputs.oma": [[664, "module-pypath.inputs.oma"]], "oma_orthologs() (in module pypath.inputs.oma)": [[665, "pypath.inputs.oma.oma_orthologs"]], "oma_table() (in module pypath.inputs.oma)": [[666, "pypath.inputs.oma.oma_table"]], "pypath.inputs.ontology": [[667, "module-pypath.inputs.ontology"]], "listof_ontologies() (in module pypath.inputs.ontology)": [[668, "pypath.inputs.ontology.listof_ontologies"]], "ontology() (in module pypath.inputs.ontology)": [[669, "pypath.inputs.ontology.ontology"]], "pypath.inputs.opentargets": [[670, "module-pypath.inputs.opentargets"]], "opentargets_adverse_reactions() (in module pypath.inputs.opentargets)": [[671, "pypath.inputs.opentargets.opentargets_adverse_reactions"]], "opentargets_baseline_expression() (in module pypath.inputs.opentargets)": [[672, "pypath.inputs.opentargets.opentargets_baseline_expression"]], "opentargets_direct_score() (in module pypath.inputs.opentargets)": [[673, "pypath.inputs.opentargets.opentargets_direct_score"]], "opentargets_general() (in module pypath.inputs.opentargets)": [[674, "pypath.inputs.opentargets.opentargets_general"]], "opentargets_indirect_score() (in module pypath.inputs.opentargets)": [[675, "pypath.inputs.opentargets.opentargets_indirect_score"]], "pypath.inputs.opm": [[676, "module-pypath.inputs.opm"]], "opm_annotations() (in module pypath.inputs.opm)": [[677, "pypath.inputs.opm.opm_annotations"]], "pypath.inputs.oreganno": [[678, "module-pypath.inputs.oreganno"]], "oreganno_interactions() (in module pypath.inputs.oreganno)": [[679, "pypath.inputs.oreganno.oreganno_interactions"]], "oreganno_raw() (in module pypath.inputs.oreganno)": [[680, "pypath.inputs.oreganno.oreganno_raw"]], "pypath.inputs.panglaodb": [[681, "module-pypath.inputs.panglaodb"]], "panglaodb_annotations() (in module pypath.inputs.panglaodb)": [[682, "pypath.inputs.panglaodb.panglaodb_annotations"]], "panglaodb_raw() (in module pypath.inputs.panglaodb)": [[683, "pypath.inputs.panglaodb.panglaodb_raw"]], "pypath.inputs.pathophenodb": [[684, "module-pypath.inputs.pathophenodb"]], "diseasepathogen (class in pypath.inputs.pathophenodb)": [[685, "pypath.inputs.pathophenodb.DiseasePathogen"]], "__init__() (pypath.inputs.pathophenodb.diseasepathogen method)": [[685, "pypath.inputs.pathophenodb.DiseasePathogen.__init__"]], "count() (pypath.inputs.pathophenodb.diseasepathogen method)": [[685, "pypath.inputs.pathophenodb.DiseasePathogen.count"]], "disease (pypath.inputs.pathophenodb.diseasepathogen attribute)": [[685, "pypath.inputs.pathophenodb.DiseasePathogen.disease"]], "disease_id (pypath.inputs.pathophenodb.diseasepathogen attribute)": [[685, "pypath.inputs.pathophenodb.DiseasePathogen.disease_id"]], "evidence (pypath.inputs.pathophenodb.diseasepathogen attribute)": [[685, "pypath.inputs.pathophenodb.DiseasePathogen.evidence"]], "index() (pypath.inputs.pathophenodb.diseasepathogen method)": [[685, "pypath.inputs.pathophenodb.DiseasePathogen.index"]], "pathogen (pypath.inputs.pathophenodb.diseasepathogen attribute)": [[685, "pypath.inputs.pathophenodb.DiseasePathogen.pathogen"]], "pathogen_taxid (pypath.inputs.pathophenodb.diseasepathogen attribute)": [[685, "pypath.inputs.pathophenodb.DiseasePathogen.pathogen_taxid"]], "disease_pathogen_interactions() (in module pypath.inputs.pathophenodb)": [[686, "pypath.inputs.pathophenodb.disease_pathogen_interactions"]], "pypath.inputs.pathwaycommons": [[687, "module-pypath.inputs.pathwaycommons"]], "pathwaycommonsinteraction (class in pypath.inputs.pathwaycommons)": [[688, "pypath.inputs.pathwaycommons.PathwayCommonsInteraction"]], "__init__() (pypath.inputs.pathwaycommons.pathwaycommonsinteraction method)": [[688, "pypath.inputs.pathwaycommons.PathwayCommonsInteraction.__init__"]], "count() (pypath.inputs.pathwaycommons.pathwaycommonsinteraction method)": [[688, "pypath.inputs.pathwaycommons.PathwayCommonsInteraction.count"]], "id_a (pypath.inputs.pathwaycommons.pathwaycommonsinteraction attribute)": [[688, "pypath.inputs.pathwaycommons.PathwayCommonsInteraction.id_a"]], "id_b (pypath.inputs.pathwaycommons.pathwaycommonsinteraction attribute)": [[688, "pypath.inputs.pathwaycommons.PathwayCommonsInteraction.id_b"]], "index() (pypath.inputs.pathwaycommons.pathwaycommonsinteraction method)": [[688, "pypath.inputs.pathwaycommons.PathwayCommonsInteraction.index"]], "interaction_type (pypath.inputs.pathwaycommons.pathwaycommonsinteraction attribute)": [[688, "pypath.inputs.pathwaycommons.PathwayCommonsInteraction.interaction_type"]], "resource (pypath.inputs.pathwaycommons.pathwaycommonsinteraction attribute)": [[688, "pypath.inputs.pathwaycommons.PathwayCommonsInteraction.resource"]], "pathwaycommonsresource (class in pypath.inputs.pathwaycommons)": [[689, "pypath.inputs.pathwaycommons.PathwayCommonsResource"]], "__init__() (pypath.inputs.pathwaycommons.pathwaycommonsresource method)": [[689, "pypath.inputs.pathwaycommons.PathwayCommonsResource.__init__"]], "count() (pypath.inputs.pathwaycommons.pathwaycommonsresource method)": [[689, "pypath.inputs.pathwaycommons.PathwayCommonsResource.count"]], "index() (pypath.inputs.pathwaycommons.pathwaycommonsresource method)": [[689, "pypath.inputs.pathwaycommons.PathwayCommonsResource.index"]], "name (pypath.inputs.pathwaycommons.pathwaycommonsresource attribute)": [[689, "pypath.inputs.pathwaycommons.PathwayCommonsResource.name"]], "pc_label (pypath.inputs.pathwaycommons.pathwaycommonsresource attribute)": [[689, "pypath.inputs.pathwaycommons.PathwayCommonsResource.pc_label"]], "version (pypath.inputs.pathwaycommons.pathwaycommonsresource attribute)": [[689, "pypath.inputs.pathwaycommons.PathwayCommonsResource.version"]], "pathwaycommons_bind_interactions() (in module pypath.inputs.pathwaycommons)": [[690, "pypath.inputs.pathwaycommons.pathwaycommons_bind_interactions"]], "pathwaycommons_biogrid_interactions() (in module pypath.inputs.pathwaycommons)": [[691, "pypath.inputs.pathwaycommons.pathwaycommons_biogrid_interactions"]], "pathwaycommons_corum_interactions() (in module pypath.inputs.pathwaycommons)": [[692, "pypath.inputs.pathwaycommons.pathwaycommons_corum_interactions"]], "pathwaycommons_dip_interactions() (in module pypath.inputs.pathwaycommons)": [[693, "pypath.inputs.pathwaycommons.pathwaycommons_dip_interactions"]], "pathwaycommons_hprd_interactions() (in module pypath.inputs.pathwaycommons)": [[694, "pypath.inputs.pathwaycommons.pathwaycommons_hprd_interactions"]], "pathwaycommons_inoh_interactions() (in module pypath.inputs.pathwaycommons)": [[695, "pypath.inputs.pathwaycommons.pathwaycommons_inoh_interactions"]], "pathwaycommons_intact_interactions() (in module pypath.inputs.pathwaycommons)": [[696, "pypath.inputs.pathwaycommons.pathwaycommons_intact_interactions"]], "pathwaycommons_interactions() (in module pypath.inputs.pathwaycommons)": [[697, "pypath.inputs.pathwaycommons.pathwaycommons_interactions"]], "pathwaycommons_kegg_interactions() (in module pypath.inputs.pathwaycommons)": [[698, "pypath.inputs.pathwaycommons.pathwaycommons_kegg_interactions"]], "pathwaycommons_netpath_interactions() (in module pypath.inputs.pathwaycommons)": [[699, "pypath.inputs.pathwaycommons.pathwaycommons_netpath_interactions"]], "pathwaycommons_panther_interactions() (in module pypath.inputs.pathwaycommons)": [[700, "pypath.inputs.pathwaycommons.pathwaycommons_panther_interactions"]], "pathwaycommons_phosphosite_interactions() (in module pypath.inputs.pathwaycommons)": [[701, "pypath.inputs.pathwaycommons.pathwaycommons_phosphosite_interactions"]], "pathwaycommons_reactome_interactions() (in module pypath.inputs.pathwaycommons)": [[702, "pypath.inputs.pathwaycommons.pathwaycommons_reactome_interactions"]], "pathwaycommons_wikipathways_interactions() (in module pypath.inputs.pathwaycommons)": [[703, "pypath.inputs.pathwaycommons.pathwaycommons_wikipathways_interactions"]], "pypath.inputs.pazar": [[704, "module-pypath.inputs.pazar"]], "pazar_interactions() (in module pypath.inputs.pazar)": [[705, "pypath.inputs.pazar.pazar_interactions"]], "pypath.inputs.pdb": [[706, "module-pypath.inputs.pdb"]], "pdb_chains() (in module pypath.inputs.pdb)": [[707, "pypath.inputs.pdb.pdb_chains"]], "pdb_complexes() (in module pypath.inputs.pdb)": [[708, "pypath.inputs.pdb.pdb_complexes"]], "pdb_uniprot() (in module pypath.inputs.pdb)": [[709, "pypath.inputs.pdb.pdb_uniprot"]], "pypath.inputs.pdzbase": [[710, "module-pypath.inputs.pdzbase"]], "pdzbase_interactions() (in module pypath.inputs.pdzbase)": [[711, "pypath.inputs.pdzbase.pdzbase_interactions"]], "pypath.inputs.pepcyber": [[712, "module-pypath.inputs.pepcyber"]], "pepcyber_details() (in module pypath.inputs.pepcyber)": [[713, "pypath.inputs.pepcyber.pepcyber_details"]], "pepcyber_interactions() (in module pypath.inputs.pepcyber)": [[714, "pypath.inputs.pepcyber.pepcyber_interactions"]], "pypath.inputs.pfam": [[715, "module-pypath.inputs.pfam"]], "pfam_names() (in module pypath.inputs.pfam)": [[716, "pypath.inputs.pfam.pfam_names"]], "pfam_pdb() (in module pypath.inputs.pfam)": [[717, "pypath.inputs.pfam.pfam_pdb"]], "pfam_regions() (in module pypath.inputs.pfam)": [[718, "pypath.inputs.pfam.pfam_regions"]], "pfam_uniprot() (in module pypath.inputs.pfam)": [[719, "pypath.inputs.pfam.pfam_uniprot"]], "pypath.inputs.pharos": [[720, "module-pypath.inputs.pharos"]], "pharos_diseases() (in module pypath.inputs.pharos)": [[721, "pypath.inputs.pharos.pharos_diseases"]], "pharos_expression() (in module pypath.inputs.pharos)": [[722, "pypath.inputs.pharos.pharos_expression"]], "pharos_general() (in module pypath.inputs.pharos)": [[723, "pypath.inputs.pharos.pharos_general"]], "pharos_gtex() (in module pypath.inputs.pharos)": [[724, "pypath.inputs.pharos.pharos_gtex"]], "pharos_ligands() (in module pypath.inputs.pharos)": [[725, "pypath.inputs.pharos.pharos_ligands"]], "pharos_orthologs() (in module pypath.inputs.pharos)": [[726, "pypath.inputs.pharos.pharos_orthologs"]], "pharos_targets() (in module pypath.inputs.pharos)": [[727, "pypath.inputs.pharos.pharos_targets"]], "pharos_xrefs() (in module pypath.inputs.pharos)": [[728, "pypath.inputs.pharos.pharos_xrefs"]], "pypath.inputs.phobius": [[729, "module-pypath.inputs.phobius"]], "phobius_annotations() (in module pypath.inputs.phobius)": [[730, "pypath.inputs.phobius.phobius_annotations"]], "pypath.inputs.phosphatome": [[731, "module-pypath.inputs.phosphatome"]], "phosphatome_annotations() (in module pypath.inputs.phosphatome)": [[732, "pypath.inputs.phosphatome.phosphatome_annotations"]], "pypath.inputs.phosphoelm": [[733, "module-pypath.inputs.phosphoelm"]], "phosphoelm_enzyme_substrate() (in module pypath.inputs.phosphoelm)": [[734, "pypath.inputs.phosphoelm.phosphoelm_enzyme_substrate"]], "phosphoelm_interactions() (in module pypath.inputs.phosphoelm)": [[735, "pypath.inputs.phosphoelm.phosphoelm_interactions"]], "phosphoelm_kinases() (in module pypath.inputs.phosphoelm)": [[736, "pypath.inputs.phosphoelm.phosphoelm_kinases"]], "pypath.inputs.phosphonetworks": [[737, "module-pypath.inputs.phosphonetworks"]], "phosphonetworks_enzyme_substrate() (in module pypath.inputs.phosphonetworks)": [[738, "pypath.inputs.phosphonetworks.phosphonetworks_enzyme_substrate"]], "phosphonetworks_interactions() (in module pypath.inputs.phosphonetworks)": [[739, "pypath.inputs.phosphonetworks.phosphonetworks_interactions"]], "pypath.inputs.phosphopoint": [[740, "module-pypath.inputs.phosphopoint"]], "phosphopoint_directions() (in module pypath.inputs.phosphopoint)": [[741, "pypath.inputs.phosphopoint.phosphopoint_directions"]], "phosphopoint_interactions() (in module pypath.inputs.phosphopoint)": [[742, "pypath.inputs.phosphopoint.phosphopoint_interactions"]], "pypath.inputs.phosphosite": [[743, "module-pypath.inputs.phosphosite"]], "phosphosite_directions() (in module pypath.inputs.phosphosite)": [[744, "pypath.inputs.phosphosite.phosphosite_directions"]], "phosphosite_enzyme_substrate() (in module pypath.inputs.phosphosite)": [[745, "pypath.inputs.phosphosite.phosphosite_enzyme_substrate"]], "phosphosite_interactions() (in module pypath.inputs.phosphosite)": [[746, "pypath.inputs.phosphosite.phosphosite_interactions"]], "phosphosite_interactions_all() (in module pypath.inputs.phosphosite)": [[747, "pypath.inputs.phosphosite.phosphosite_interactions_all"]], "phosphosite_interactions_curated() (in module pypath.inputs.phosphosite)": [[748, "pypath.inputs.phosphosite.phosphosite_interactions_curated"]], "phosphosite_interactions_new() (in module pypath.inputs.phosphosite)": [[749, "pypath.inputs.phosphosite.phosphosite_interactions_new"]], "phosphosite_interactions_noref() (in module pypath.inputs.phosphosite)": [[750, "pypath.inputs.phosphosite.phosphosite_interactions_noref"]], "phosphosite_ptm_orthology() (in module pypath.inputs.phosphosite)": [[751, "pypath.inputs.phosphosite.phosphosite_ptm_orthology"]], "phosphosite_ptms() (in module pypath.inputs.phosphosite)": [[752, "pypath.inputs.phosphosite.phosphosite_ptms"]], "phosphosite_regsites() (in module pypath.inputs.phosphosite)": [[753, "pypath.inputs.phosphosite.phosphosite_regsites"]], "phosphosite_regsites_one_organism() (in module pypath.inputs.phosphosite)": [[754, "pypath.inputs.phosphosite.phosphosite_regsites_one_organism"]], "regsites_tab() (in module pypath.inputs.phosphosite)": [[755, "pypath.inputs.phosphosite.regsites_tab"]], "pypath.inputs.pisa": [[756, "module-pypath.inputs.pisa"]], "pisabond (class in pypath.inputs.pisa)": [[757, "pypath.inputs.pisa.PisaBond"]], "__init__() (pypath.inputs.pisa.pisabond method)": [[757, "pypath.inputs.pisa.PisaBond.__init__"]], "chain_1 (pypath.inputs.pisa.pisabond attribute)": [[757, "pypath.inputs.pisa.PisaBond.chain_1"]], "chain_2 (pypath.inputs.pisa.pisabond attribute)": [[757, "pypath.inputs.pisa.PisaBond.chain_2"]], "count() (pypath.inputs.pisa.pisabond method)": [[757, "pypath.inputs.pisa.PisaBond.count"]], "index() (pypath.inputs.pisa.pisabond method)": [[757, "pypath.inputs.pisa.PisaBond.index"]], "residue_1 (pypath.inputs.pisa.pisabond attribute)": [[757, "pypath.inputs.pisa.PisaBond.residue_1"]], "residue_2 (pypath.inputs.pisa.pisabond attribute)": [[757, "pypath.inputs.pisa.PisaBond.residue_2"]], "seqnum_1 (pypath.inputs.pisa.pisabond attribute)": [[757, "pypath.inputs.pisa.PisaBond.seqnum_1"]], "seqnum_2 (pypath.inputs.pisa.pisabond attribute)": [[757, "pypath.inputs.pisa.PisaBond.seqnum_2"]], "uniprot_1 (pypath.inputs.pisa.pisabond attribute)": [[757, "pypath.inputs.pisa.PisaBond.uniprot_1"]], "uniprot_2 (pypath.inputs.pisa.pisabond attribute)": [[757, "pypath.inputs.pisa.PisaBond.uniprot_2"]], "pisa_bonds() (in module pypath.inputs.pisa)": [[758, "pypath.inputs.pisa.pisa_bonds"]], "pisa_interfaces() (in module pypath.inputs.pisa)": [[759, "pypath.inputs.pisa.pisa_interfaces"]], "pypath.inputs.pro": [[760, "module-pypath.inputs.pro"]], "get_pro() (in module pypath.inputs.pro)": [[761, "pypath.inputs.pro.get_pro"]], "pro_mapping() (in module pypath.inputs.pro)": [[762, "pypath.inputs.pro.pro_mapping"]], "pypath.inputs.progeny": [[763, "module-pypath.inputs.progeny"]], "progeny_annotations() (in module pypath.inputs.progeny)": [[764, "pypath.inputs.progeny.progeny_annotations"]], "progeny_raw() (in module pypath.inputs.progeny)": [[765, "pypath.inputs.progeny.progeny_raw"]], "pypath.inputs.proteinatlas": [[766, "module-pypath.inputs.proteinatlas"]], "get_proteinatlas() (in module pypath.inputs.proteinatlas)": [[767, "pypath.inputs.proteinatlas.get_proteinatlas"]], "proteinatlas_annotations() (in module pypath.inputs.proteinatlas)": [[768, "pypath.inputs.proteinatlas.proteinatlas_annotations"]], "proteinatlas_secretome_annotations() (in module pypath.inputs.proteinatlas)": [[769, "pypath.inputs.proteinatlas.proteinatlas_secretome_annotations"]], "proteinatlas_subcellular_annotations() (in module pypath.inputs.proteinatlas)": [[770, "pypath.inputs.proteinatlas.proteinatlas_subcellular_annotations"]], "pypath.inputs.proteins": [[771, "module-pypath.inputs.proteins"]], "variants() (in module pypath.inputs.proteins)": [[772, "pypath.inputs.proteins.variants"]], "pypath.inputs.protmapper": [[773, "module-pypath.inputs.protmapper"]], "get_protmapper() (in module pypath.inputs.protmapper)": [[774, "pypath.inputs.protmapper.get_protmapper"]], "protmapper_enzyme_substrate() (in module pypath.inputs.protmapper)": [[775, "pypath.inputs.protmapper.protmapper_enzyme_substrate"]], "protmapper_interactions() (in module pypath.inputs.protmapper)": [[776, "pypath.inputs.protmapper.protmapper_interactions"]], "pypath.inputs.pubchem": [[777, "module-pypath.inputs.pubchem"]], "pubchem_mapping() (in module pypath.inputs.pubchem)": [[778, "pypath.inputs.pubchem.pubchem_mapping"]], "pypath.inputs.pubmed": [[779, "module-pypath.inputs.pubmed"]], "get_pmid() (in module pypath.inputs.pubmed)": [[780, "pypath.inputs.pubmed.get_pmid"]], "get_pubmeds() (in module pypath.inputs.pubmed)": [[781, "pypath.inputs.pubmed.get_pubmeds"]], "only_pmids() (in module pypath.inputs.pubmed)": [[782, "pypath.inputs.pubmed.only_pmids"]], "open_pubmed() (in module pypath.inputs.pubmed)": [[783, "pypath.inputs.pubmed.open_pubmed"]], "pmids_dict() (in module pypath.inputs.pubmed)": [[784, "pypath.inputs.pubmed.pmids_dict"]], "pmids_list() (in module pypath.inputs.pubmed)": [[785, "pypath.inputs.pubmed.pmids_list"]], "pypath.inputs.ramilowski2015": [[786, "module-pypath.inputs.ramilowski2015"]], "ramilowski_interactions() (in module pypath.inputs.ramilowski2015)": [[787, "pypath.inputs.ramilowski2015.ramilowski_interactions"]], "ramilowski_locations() (in module pypath.inputs.ramilowski2015)": [[788, "pypath.inputs.ramilowski2015.ramilowski_locations"]], "pypath.inputs.ramp": [[789, "module-pypath.inputs.ramp"]], "ramp_id_types() (in module pypath.inputs.ramp)": [[790, "pypath.inputs.ramp.ramp_id_types"]], "ramp_id_types_2() (in module pypath.inputs.ramp)": [[791, "pypath.inputs.ramp.ramp_id_types_2"]], "ramp_list_tables() (in module pypath.inputs.ramp)": [[792, "pypath.inputs.ramp.ramp_list_tables"]], "ramp_mapping() (in module pypath.inputs.ramp)": [[793, "pypath.inputs.ramp.ramp_mapping"]], "ramp_raw() (in module pypath.inputs.ramp)": [[794, "pypath.inputs.ramp.ramp_raw"]], "ramp_show_tables() (in module pypath.inputs.ramp)": [[795, "pypath.inputs.ramp.ramp_show_tables"]], "pypath.inputs.rdata": [[796, "module-pypath.inputs.rdata"]], "pypath.inputs.reaction": [[797, "module-pypath.inputs.reaction"]], "acsn_biopax() (in module pypath.inputs.reaction)": [[798, "pypath.inputs.reaction.acsn_biopax"]], "acsn_interactions_2() (in module pypath.inputs.reaction)": [[799, "pypath.inputs.reaction.acsn_interactions_2"]], "get_acsn_effects() (in module pypath.inputs.reaction)": [[800, "pypath.inputs.reaction.get_acsn_effects"]], "get_controls() (in module pypath.inputs.reaction)": [[801, "pypath.inputs.reaction.get_controls"]], "get_interactions() (in module pypath.inputs.reaction)": [[802, "pypath.inputs.reaction.get_interactions"]], "get_reactions() (in module pypath.inputs.reaction)": [[803, "pypath.inputs.reaction.get_reactions"]], "get_soup() (in module pypath.inputs.reaction)": [[804, "pypath.inputs.reaction.get_soup"]], "panther_biopax() (in module pypath.inputs.reaction)": [[805, "pypath.inputs.reaction.panther_biopax"]], "panther_interactions() (in module pypath.inputs.reaction)": [[806, "pypath.inputs.reaction.panther_interactions"]], "pid_biopax() (in module pypath.inputs.reaction)": [[807, "pypath.inputs.reaction.pid_biopax"]], "pid_interactions() (in module pypath.inputs.reaction)": [[808, "pypath.inputs.reaction.pid_interactions"]], "process_complex() (in module pypath.inputs.reaction)": [[809, "pypath.inputs.reaction.process_complex"]], "process_controls() (in module pypath.inputs.reaction)": [[810, "pypath.inputs.reaction.process_controls"]], "process_reactions() (in module pypath.inputs.reaction)": [[811, "pypath.inputs.reaction.process_reactions"]], "reactions_biopax() (in module pypath.inputs.reaction)": [[812, "pypath.inputs.reaction.reactions_biopax"]], "reactome_biopax() (in module pypath.inputs.reaction)": [[813, "pypath.inputs.reaction.reactome_biopax"]], "reactome_bs() (in module pypath.inputs.reaction)": [[814, "pypath.inputs.reaction.reactome_bs"]], "reactome_interactions() (in module pypath.inputs.reaction)": [[815, "pypath.inputs.reaction.reactome_interactions"]], "reactome_sbml() (in module pypath.inputs.reaction)": [[816, "pypath.inputs.reaction.reactome_sbml"]], "pypath.inputs.reactome": [[817, "module-pypath.inputs.reactome"]], "reactome_chebis() (in module pypath.inputs.reactome)": [[818, "pypath.inputs.reactome.reactome_chebis"]], "reactome_pathway_relations() (in module pypath.inputs.reactome)": [[819, "pypath.inputs.reactome.reactome_pathway_relations"]], "reactome_pathways() (in module pypath.inputs.reactome)": [[820, "pypath.inputs.reactome.reactome_pathways"]], "reactome_uniprots() (in module pypath.inputs.reactome)": [[821, "pypath.inputs.reactome.reactome_uniprots"]], "pypath.inputs.scconnect": [[822, "module-pypath.inputs.scconnect"]], "scconnect_annotations() (in module pypath.inputs.scconnect)": [[823, "pypath.inputs.scconnect.scconnect_annotations"]], "scconnect_complexes() (in module pypath.inputs.scconnect)": [[824, "pypath.inputs.scconnect.scconnect_complexes"]], "scconnect_interactions() (in module pypath.inputs.scconnect)": [[825, "pypath.inputs.scconnect.scconnect_interactions"]], "pypath.inputs.science": [[826, "module-pypath.inputs.science"]], "science_download() (in module pypath.inputs.science)": [[827, "pypath.inputs.science.science_download"]], "pypath.inputs.sider": [[828, "module-pypath.inputs.sider"]], "siderdrug (class in pypath.inputs.sider)": [[829, "pypath.inputs.sider.SiderDrug"]], "__init__() (pypath.inputs.sider.siderdrug method)": [[829, "pypath.inputs.sider.SiderDrug.__init__"]], "atc (pypath.inputs.sider.siderdrug attribute)": [[829, "pypath.inputs.sider.SiderDrug.atc"]], "count() (pypath.inputs.sider.siderdrug method)": [[829, "pypath.inputs.sider.SiderDrug.count"]], "index() (pypath.inputs.sider.siderdrug method)": [[829, "pypath.inputs.sider.SiderDrug.index"]], "name (pypath.inputs.sider.siderdrug attribute)": [[829, "pypath.inputs.sider.SiderDrug.name"]], "sidersideeffect (class in pypath.inputs.sider)": [[830, "pypath.inputs.sider.SiderSideeffect"]], "__init__() (pypath.inputs.sider.sidersideeffect method)": [[830, "pypath.inputs.sider.SiderSideeffect.__init__"]], "count() (pypath.inputs.sider.sidersideeffect method)": [[830, "pypath.inputs.sider.SiderSideeffect.count"]], "index() (pypath.inputs.sider.sidersideeffect method)": [[830, "pypath.inputs.sider.SiderSideeffect.index"]], "side_effect (pypath.inputs.sider.sidersideeffect attribute)": [[830, "pypath.inputs.sider.SiderSideeffect.side_effect"]], "umls_concept_in_meddra (pypath.inputs.sider.sidersideeffect attribute)": [[830, "pypath.inputs.sider.SiderSideeffect.umls_concept_in_meddra"]], "umls_concept_on_label (pypath.inputs.sider.sidersideeffect attribute)": [[830, "pypath.inputs.sider.SiderSideeffect.umls_concept_on_label"]], "sidersideeffectmeddra (class in pypath.inputs.sider)": [[831, "pypath.inputs.sider.SiderSideeffectMeddra"]], "__init__() (pypath.inputs.sider.sidersideeffectmeddra method)": [[831, "pypath.inputs.sider.SiderSideeffectMeddra.__init__"]], "cid (pypath.inputs.sider.sidersideeffectmeddra attribute)": [[831, "pypath.inputs.sider.SiderSideeffectMeddra.cid"]], "count() (pypath.inputs.sider.sidersideeffectmeddra method)": [[831, "pypath.inputs.sider.SiderSideeffectMeddra.count"]], "index() (pypath.inputs.sider.sidersideeffectmeddra method)": [[831, "pypath.inputs.sider.SiderSideeffectMeddra.index"]], "meddra_id (pypath.inputs.sider.sidersideeffectmeddra attribute)": [[831, "pypath.inputs.sider.SiderSideeffectMeddra.meddra_id"]], "side_effect_name (pypath.inputs.sider.sidersideeffectmeddra attribute)": [[831, "pypath.inputs.sider.SiderSideeffectMeddra.side_effect_name"]], "sidersideeffetfrequency (class in pypath.inputs.sider)": [[832, "pypath.inputs.sider.SiderSideeffetFrequency"]], "__init__() (pypath.inputs.sider.sidersideeffetfrequency method)": [[832, "pypath.inputs.sider.SiderSideeffetFrequency.__init__"]], "count() (pypath.inputs.sider.sidersideeffetfrequency method)": [[832, "pypath.inputs.sider.SiderSideeffetFrequency.count"]], "frequency (pypath.inputs.sider.sidersideeffetfrequency attribute)": [[832, "pypath.inputs.sider.SiderSideeffetFrequency.frequency"]], "index() (pypath.inputs.sider.sidersideeffetfrequency method)": [[832, "pypath.inputs.sider.SiderSideeffetFrequency.index"]], "side_effect (pypath.inputs.sider.sidersideeffetfrequency attribute)": [[832, "pypath.inputs.sider.SiderSideeffetFrequency.side_effect"]], "umls_concept_in_meddra (pypath.inputs.sider.sidersideeffetfrequency attribute)": [[832, "pypath.inputs.sider.SiderSideeffetFrequency.umls_concept_in_meddra"]], "umls_concept_on_label (pypath.inputs.sider.sidersideeffetfrequency attribute)": [[832, "pypath.inputs.sider.SiderSideeffetFrequency.umls_concept_on_label"]], "sider_drug_names() (in module pypath.inputs.sider)": [[833, "pypath.inputs.sider.sider_drug_names"]], "sider_meddra_side_effects() (in module pypath.inputs.sider)": [[834, "pypath.inputs.sider.sider_meddra_side_effects"]], "sider_side_effect_frequencies() (in module pypath.inputs.sider)": [[835, "pypath.inputs.sider.sider_side_effect_frequencies"]], "sider_side_effects() (in module pypath.inputs.sider)": [[836, "pypath.inputs.sider.sider_side_effects"]], "pypath.inputs.signalink": [[837, "module-pypath.inputs.signalink"]], "signalink_annotations() (in module pypath.inputs.signalink)": [[838, "pypath.inputs.signalink.signalink_annotations"]], "signalink_function_annotations() (in module pypath.inputs.signalink)": [[839, "pypath.inputs.signalink.signalink_function_annotations"]], "signalink_interactions() (in module pypath.inputs.signalink)": [[840, "pypath.inputs.signalink.signalink_interactions"]], "signalink_pathway_annotations() (in module pypath.inputs.signalink)": [[841, "pypath.inputs.signalink.signalink_pathway_annotations"]], "pypath.inputs.signor": [[842, "module-pypath.inputs.signor"]], "signor_complexes() (in module pypath.inputs.signor)": [[843, "pypath.inputs.signor.signor_complexes"]], "signor_enzyme_substrate() (in module pypath.inputs.signor)": [[844, "pypath.inputs.signor.signor_enzyme_substrate"]], "signor_interactions() (in module pypath.inputs.signor)": [[845, "pypath.inputs.signor.signor_interactions"]], "signor_pathway_annotations() (in module pypath.inputs.signor)": [[846, "pypath.inputs.signor.signor_pathway_annotations"]], "signor_pathways() (in module pypath.inputs.signor)": [[847, "pypath.inputs.signor.signor_pathways"]], "signor_protein_families() (in module pypath.inputs.signor)": [[848, "pypath.inputs.signor.signor_protein_families"]], "pypath.inputs.spike": [[849, "module-pypath.inputs.spike"]], "spike_complexes() (in module pypath.inputs.spike)": [[850, "pypath.inputs.spike.spike_complexes"]], "spike_interactions() (in module pypath.inputs.spike)": [[851, "pypath.inputs.spike.spike_interactions"]], "pypath.inputs.stitch": [[852, "module-pypath.inputs.stitch"]], "stitch_actions_interactions() (in module pypath.inputs.stitch)": [[853, "pypath.inputs.stitch.stitch_actions_interactions"]], "stitch_links_interactions() (in module pypath.inputs.stitch)": [[854, "pypath.inputs.stitch.stitch_links_interactions"]], "pypath.inputs.string": [[855, "module-pypath.inputs.string"]], "string_effects() (in module pypath.inputs.string)": [[856, "pypath.inputs.string.string_effects"]], "string_links_interactions() (in module pypath.inputs.string)": [[857, "pypath.inputs.string.string_links_interactions"]], "string_physical_interactions() (in module pypath.inputs.string)": [[858, "pypath.inputs.string.string_physical_interactions"]], "string_species() (in module pypath.inputs.string)": [[859, "pypath.inputs.string.string_species"]], "pypath.inputs.surfaceome": [[860, "module-pypath.inputs.surfaceome"]], "surfaceome_annotations() (in module pypath.inputs.surfaceome)": [[861, "pypath.inputs.surfaceome.surfaceome_annotations"]], "pypath.inputs.switches_elm": [[862, "module-pypath.inputs.switches_elm"]], "get_switches_elm() (in module pypath.inputs.switches_elm)": [[863, "pypath.inputs.switches_elm.get_switches_elm"]], "pypath.inputs.talklr": [[864, "module-pypath.inputs.talklr"]], "talklr_annotations() (in module pypath.inputs.talklr)": [[865, "pypath.inputs.talklr.talklr_annotations"]], "talklr_interactions() (in module pypath.inputs.talklr)": [[866, "pypath.inputs.talklr.talklr_interactions"]], "talklr_raw() (in module pypath.inputs.talklr)": [[867, "pypath.inputs.talklr.talklr_raw"]], "pypath.inputs.tcdb": [[868, "module-pypath.inputs.tcdb"]], "tcdb_annotations() (in module pypath.inputs.tcdb)": [[869, "pypath.inputs.tcdb.tcdb_annotations"]], "tcdb_classes() (in module pypath.inputs.tcdb)": [[870, "pypath.inputs.tcdb.tcdb_classes"]], "tcdb_families() (in module pypath.inputs.tcdb)": [[871, "pypath.inputs.tcdb.tcdb_families"]], "pypath.inputs.tfcensus": [[872, "module-pypath.inputs.tfcensus"]], "tfcensus_annotations() (in module pypath.inputs.tfcensus)": [[873, "pypath.inputs.tfcensus.tfcensus_annotations"]], "pypath.inputs.threedcomplex": [[874, "module-pypath.inputs.threedcomplex"]], "threedcomplex_chains() (in module pypath.inputs.threedcomplex)": [[875, "pypath.inputs.threedcomplex.threedcomplex_chains"]], "threedcomplex_complexes() (in module pypath.inputs.threedcomplex)": [[876, "pypath.inputs.threedcomplex.threedcomplex_complexes"]], "threedcomplex_contacts() (in module pypath.inputs.threedcomplex)": [[877, "pypath.inputs.threedcomplex.threedcomplex_contacts"]], "threedcomplex_ddi() (in module pypath.inputs.threedcomplex)": [[878, "pypath.inputs.threedcomplex.threedcomplex_ddi"]], "threedcomplex_nresidues() (in module pypath.inputs.threedcomplex)": [[879, "pypath.inputs.threedcomplex.threedcomplex_nresidues"]], "pypath.inputs.threedid": [[880, "module-pypath.inputs.threedid"]], "get_3did() (in module pypath.inputs.threedid)": [[881, "pypath.inputs.threedid.get_3did"]], "get_3did_ddi() (in module pypath.inputs.threedid)": [[882, "pypath.inputs.threedid.get_3did_ddi"]], "get_3did_dmi() (in module pypath.inputs.threedid)": [[883, "pypath.inputs.threedid.get_3did_dmi"]], "process_3did_dmi() (in module pypath.inputs.threedid)": [[884, "pypath.inputs.threedid.process_3did_dmi"]], "pypath.inputs.topdb": [[885, "module-pypath.inputs.topdb"]], "topdb_annotations() (in module pypath.inputs.topdb)": [[886, "pypath.inputs.topdb.topdb_annotations"]], "pypath.inputs.transmir": [[887, "module-pypath.inputs.transmir"]], "transmir_interactions() (in module pypath.inputs.transmir)": [[888, "pypath.inputs.transmir.transmir_interactions"]], "pypath.inputs.trip": [[889, "module-pypath.inputs.trip"]], "take_a_trip() (in module pypath.inputs.trip)": [[890, "pypath.inputs.trip.take_a_trip"]], "trip_find_uniprot() (in module pypath.inputs.trip)": [[891, "pypath.inputs.trip.trip_find_uniprot"]], "trip_get_uniprot() (in module pypath.inputs.trip)": [[892, "pypath.inputs.trip.trip_get_uniprot"]], "trip_interactions() (in module pypath.inputs.trip)": [[893, "pypath.inputs.trip.trip_interactions"]], "trip_process() (in module pypath.inputs.trip)": [[894, "pypath.inputs.trip.trip_process"]], "trip_process_table() (in module pypath.inputs.trip)": [[895, "pypath.inputs.trip.trip_process_table"]], "pypath.inputs.trrust": [[896, "module-pypath.inputs.trrust"]], "trrust_human() (in module pypath.inputs.trrust)": [[897, "pypath.inputs.trrust.trrust_human"]], "trrust_interactions() (in module pypath.inputs.trrust)": [[898, "pypath.inputs.trrust.trrust_interactions"]], "trrust_mouse() (in module pypath.inputs.trrust)": [[899, "pypath.inputs.trrust.trrust_mouse"]], "pypath.inputs.twosides": [[900, "module-pypath.inputs.twosides"]], "twosides_interactions() (in module pypath.inputs.twosides)": [[901, "pypath.inputs.twosides.twosides_interactions"]], "pypath.inputs.unichem": [[902, "module-pypath.inputs.unichem"]], "info() (in module pypath.inputs.unichem)": [[903, "pypath.inputs.unichem.info"]], "unichem_info() (in module pypath.inputs.unichem)": [[904, "pypath.inputs.unichem.unichem_info"]], "unichem_mapping() (in module pypath.inputs.unichem)": [[905, "pypath.inputs.unichem.unichem_mapping"]], "unichem_sources() (in module pypath.inputs.unichem)": [[906, "pypath.inputs.unichem.unichem_sources"]], "pypath.inputs.uniprot": [[907, "module-pypath.inputs.uniprot"]], "taxon (class in pypath.inputs.uniprot)": [[908, "pypath.inputs.uniprot.Taxon"]], "__init__() (pypath.inputs.uniprot.taxon method)": [[908, "pypath.inputs.uniprot.Taxon.__init__"]], "count() (pypath.inputs.uniprot.taxon method)": [[908, "pypath.inputs.uniprot.Taxon.count"]], "english (pypath.inputs.uniprot.taxon attribute)": [[908, "pypath.inputs.uniprot.Taxon.english"]], "index() (pypath.inputs.uniprot.taxon method)": [[908, "pypath.inputs.uniprot.Taxon.index"]], "latin (pypath.inputs.uniprot.taxon attribute)": [[908, "pypath.inputs.uniprot.Taxon.latin"]], "latin_synonym (pypath.inputs.uniprot.taxon attribute)": [[908, "pypath.inputs.uniprot.Taxon.latin_synonym"]], "ncbi_id (pypath.inputs.uniprot.taxon attribute)": [[908, "pypath.inputs.uniprot.Taxon.ncbi_id"]], "uniprotquery (class in pypath.inputs.uniprot)": [[909, "pypath.inputs.uniprot.UniprotQuery"]], "__init__() (pypath.inputs.uniprot.uniprotquery method)": [[909, "pypath.inputs.uniprot.UniprotQuery.__init__"]], "__iter__() (pypath.inputs.uniprot.uniprotquery method)": [[909, "pypath.inputs.uniprot.UniprotQuery.__iter__"]], "fail_on_empty (pypath.inputs.uniprot.uniprotquery attribute)": [[909, "pypath.inputs.uniprot.UniprotQuery.fail_on_empty"]], "name_process (pypath.inputs.uniprot.uniprotquery attribute)": [[909, "pypath.inputs.uniprot.UniprotQuery.name_process"]], "perform() (pypath.inputs.uniprot.uniprotquery method)": [[909, "pypath.inputs.uniprot.UniprotQuery.perform"]], "url (pypath.inputs.uniprot.uniprotquery property)": [[909, "pypath.inputs.uniprot.UniprotQuery.url"]], "url_plain (pypath.inputs.uniprot.uniprotquery property)": [[909, "pypath.inputs.uniprot.UniprotQuery.url_plain"]], "uniprotrecordhistory (class in pypath.inputs.uniprot)": [[910, "pypath.inputs.uniprot.UniprotRecordHistory"]], "__init__() (pypath.inputs.uniprot.uniprotrecordhistory method)": [[910, "pypath.inputs.uniprot.UniprotRecordHistory.__init__"]], "count() (pypath.inputs.uniprot.uniprotrecordhistory method)": [[910, "pypath.inputs.uniprot.UniprotRecordHistory.count"]], "database (pypath.inputs.uniprot.uniprotrecordhistory attribute)": [[910, "pypath.inputs.uniprot.UniprotRecordHistory.database"]], "date (pypath.inputs.uniprot.uniprotrecordhistory attribute)": [[910, "pypath.inputs.uniprot.UniprotRecordHistory.date"]], "entry_name (pypath.inputs.uniprot.uniprotrecordhistory attribute)": [[910, "pypath.inputs.uniprot.UniprotRecordHistory.entry_name"]], "entry_version (pypath.inputs.uniprot.uniprotrecordhistory attribute)": [[910, "pypath.inputs.uniprot.UniprotRecordHistory.entry_version"]], "index() (pypath.inputs.uniprot.uniprotrecordhistory method)": [[910, "pypath.inputs.uniprot.UniprotRecordHistory.index"]], "number (pypath.inputs.uniprot.uniprotrecordhistory attribute)": [[910, "pypath.inputs.uniprot.UniprotRecordHistory.number"]], "replaced_by (pypath.inputs.uniprot.uniprotrecordhistory attribute)": [[910, "pypath.inputs.uniprot.UniprotRecordHistory.replaced_by"]], "replaces (pypath.inputs.uniprot.uniprotrecordhistory attribute)": [[910, "pypath.inputs.uniprot.UniprotRecordHistory.replaces"]], "sequence_version (pypath.inputs.uniprot.uniprotrecordhistory attribute)": [[910, "pypath.inputs.uniprot.UniprotRecordHistory.sequence_version"]], "deleted_uniprot_genesymbol() (in module pypath.inputs.uniprot)": [[911, "pypath.inputs.uniprot.deleted_uniprot_genesymbol"]], "get_uniprot_sec() (in module pypath.inputs.uniprot)": [[912, "pypath.inputs.uniprot.get_uniprot_sec"]], "idmapping_idtypes() (in module pypath.inputs.uniprot)": [[913, "pypath.inputs.uniprot.idmapping_idtypes"]], "protein_datasheet() (in module pypath.inputs.uniprot)": [[914, "pypath.inputs.uniprot.protein_datasheet"]], "query_builder() (in module pypath.inputs.uniprot)": [[915, "pypath.inputs.uniprot.query_builder"]], "swissprot_deleted() (in module pypath.inputs.uniprot)": [[916, "pypath.inputs.uniprot.swissprot_deleted"]], "trembl_deleted() (in module pypath.inputs.uniprot)": [[917, "pypath.inputs.uniprot.trembl_deleted"]], "uniprot_data() (in module pypath.inputs.uniprot)": [[918, "pypath.inputs.uniprot.uniprot_data"]], "uniprot_deleted() (in module pypath.inputs.uniprot)": [[919, "pypath.inputs.uniprot.uniprot_deleted"]], "uniprot_families() (in module pypath.inputs.uniprot)": [[920, "pypath.inputs.uniprot.uniprot_families"]], "uniprot_history() (in module pypath.inputs.uniprot)": [[921, "pypath.inputs.uniprot.uniprot_history"]], "uniprot_history_recent_datasheet() (in module pypath.inputs.uniprot)": [[922, "pypath.inputs.uniprot.uniprot_history_recent_datasheet"]], "uniprot_keywords() (in module pypath.inputs.uniprot)": [[923, "pypath.inputs.uniprot.uniprot_keywords"]], "uniprot_locations() (in module pypath.inputs.uniprot)": [[924, "pypath.inputs.uniprot.uniprot_locations"]], "uniprot_ncbi_taxids() (in module pypath.inputs.uniprot)": [[925, "pypath.inputs.uniprot.uniprot_ncbi_taxids"]], "uniprot_ncbi_taxids_2() (in module pypath.inputs.uniprot)": [[926, "pypath.inputs.uniprot.uniprot_ncbi_taxids_2"]], "uniprot_preprocess() (in module pypath.inputs.uniprot)": [[927, "pypath.inputs.uniprot.uniprot_preprocess"]], "uniprot_query() (in module pypath.inputs.uniprot)": [[928, "pypath.inputs.uniprot.uniprot_query"]], "uniprot_recent_version() (in module pypath.inputs.uniprot)": [[929, "pypath.inputs.uniprot.uniprot_recent_version"]], "uniprot_taxonomy() (in module pypath.inputs.uniprot)": [[930, "pypath.inputs.uniprot.uniprot_taxonomy"]], "uniprot_tissues() (in module pypath.inputs.uniprot)": [[931, "pypath.inputs.uniprot.uniprot_tissues"]], "uniprot_topology() (in module pypath.inputs.uniprot)": [[932, "pypath.inputs.uniprot.uniprot_topology"]], "valid_uniprot() (in module pypath.inputs.uniprot)": [[933, "pypath.inputs.uniprot.valid_uniprot"]], "pypath.inputs.uniprot_db": [[934, "module-pypath.inputs.uniprot_db"]], "all_swissprots() (in module pypath.inputs.uniprot_db)": [[935, "pypath.inputs.uniprot_db.all_swissprots"]], "all_trembls() (in module pypath.inputs.uniprot_db)": [[936, "pypath.inputs.uniprot_db.all_trembls"]], "all_uniprots() (in module pypath.inputs.uniprot_db)": [[937, "pypath.inputs.uniprot_db.all_uniprots"]], "get_db() (in module pypath.inputs.uniprot_db)": [[938, "pypath.inputs.uniprot_db.get_db"]], "init_db() (in module pypath.inputs.uniprot_db)": [[939, "pypath.inputs.uniprot_db.init_db"]], "is_swissprot() (in module pypath.inputs.uniprot_db)": [[940, "pypath.inputs.uniprot_db.is_swissprot"]], "is_trembl() (in module pypath.inputs.uniprot_db)": [[941, "pypath.inputs.uniprot_db.is_trembl"]], "is_uniprot() (in module pypath.inputs.uniprot_db)": [[942, "pypath.inputs.uniprot_db.is_uniprot"]], "pypath.inputs.wang": [[943, "module-pypath.inputs.wang"]], "cui_interactions() (in module pypath.inputs.wang)": [[944, "pypath.inputs.wang.cui_interactions"]], "hsn_interactions() (in module pypath.inputs.wang)": [[945, "pypath.inputs.wang.hsn_interactions"]], "wang_annotations() (in module pypath.inputs.wang)": [[946, "pypath.inputs.wang.wang_annotations"]], "wang_interactions() (in module pypath.inputs.wang)": [[947, "pypath.inputs.wang.wang_interactions"]], "pypath.inputs.wojtowicz2020": [[948, "module-pypath.inputs.wojtowicz2020"]], "wojtowicz2020_interactions() (in module pypath.inputs.wojtowicz2020)": [[949, "pypath.inputs.wojtowicz2020.wojtowicz2020_interactions"]], "wojtowicz2020_raw() (in module pypath.inputs.wojtowicz2020)": [[950, "pypath.inputs.wojtowicz2020.wojtowicz2020_raw"]], "pypath.inputs.zhong2015": [[951, "module-pypath.inputs.zhong2015"]], "zhong2015_annotations() (in module pypath.inputs.zhong2015)": [[952, "pypath.inputs.zhong2015.zhong2015_annotations"]], "pypath.internals": [[953, "module-pypath.internals"]], "pypath.internals.annot_formats": [[954, "module-pypath.internals.annot_formats"]], "annotdef (class in pypath.internals.annot_formats)": [[955, "pypath.internals.annot_formats.AnnotDef"]], "__init__() (pypath.internals.annot_formats.annotdef method)": [[955, "pypath.internals.annot_formats.AnnotDef.__init__"]], "args (pypath.internals.annot_formats.annotdef attribute)": [[955, "pypath.internals.annot_formats.AnnotDef.args"]], "aspect (pypath.internals.annot_formats.annotdef attribute)": [[955, "pypath.internals.annot_formats.AnnotDef.aspect"]], "avoid (pypath.internals.annot_formats.annotdef attribute)": [[955, "pypath.internals.annot_formats.AnnotDef.avoid"]], "count() (pypath.internals.annot_formats.annotdef method)": [[955, "pypath.internals.annot_formats.AnnotDef.count"]], "enabled (pypath.internals.annot_formats.annotdef attribute)": [[955, "pypath.internals.annot_formats.AnnotDef.enabled"]], "exclude (pypath.internals.annot_formats.annotdef attribute)": [[955, "pypath.internals.annot_formats.AnnotDef.exclude"]], "index() (pypath.internals.annot_formats.annotdef method)": [[955, "pypath.internals.annot_formats.AnnotDef.index"]], "limit (pypath.internals.annot_formats.annotdef attribute)": [[955, "pypath.internals.annot_formats.AnnotDef.limit"]], "name (pypath.internals.annot_formats.annotdef attribute)": [[955, "pypath.internals.annot_formats.AnnotDef.name"]], "parent (pypath.internals.annot_formats.annotdef attribute)": [[955, "pypath.internals.annot_formats.AnnotDef.parent"]], "receiver (pypath.internals.annot_formats.annotdef attribute)": [[955, "pypath.internals.annot_formats.AnnotDef.receiver"]], "resource (pypath.internals.annot_formats.annotdef attribute)": [[955, "pypath.internals.annot_formats.AnnotDef.resource"]], "resource_name (pypath.internals.annot_formats.annotdef attribute)": [[955, "pypath.internals.annot_formats.AnnotDef.resource_name"]], "scope (pypath.internals.annot_formats.annotdef attribute)": [[955, "pypath.internals.annot_formats.AnnotDef.scope"]], "source (pypath.internals.annot_formats.annotdef attribute)": [[955, "pypath.internals.annot_formats.AnnotDef.source"]], "transmitter (pypath.internals.annot_formats.annotdef attribute)": [[955, "pypath.internals.annot_formats.AnnotDef.transmitter"]], "annotdefkey (class in pypath.internals.annot_formats)": [[956, "pypath.internals.annot_formats.AnnotDefKey"]], "__init__() (pypath.internals.annot_formats.annotdefkey method)": [[956, "pypath.internals.annot_formats.AnnotDefKey.__init__"]], "count() (pypath.internals.annot_formats.annotdefkey method)": [[956, "pypath.internals.annot_formats.AnnotDefKey.count"]], "index() (pypath.internals.annot_formats.annotdefkey method)": [[956, "pypath.internals.annot_formats.AnnotDefKey.index"]], "name (pypath.internals.annot_formats.annotdefkey attribute)": [[956, "pypath.internals.annot_formats.AnnotDefKey.name"]], "parent (pypath.internals.annot_formats.annotdefkey attribute)": [[956, "pypath.internals.annot_formats.AnnotDefKey.parent"]], "resource (pypath.internals.annot_formats.annotdefkey attribute)": [[956, "pypath.internals.annot_formats.AnnotDefKey.resource"]], "annotop (class in pypath.internals.annot_formats)": [[957, "pypath.internals.annot_formats.AnnotOp"]], "__init__() (pypath.internals.annot_formats.annotop method)": [[957, "pypath.internals.annot_formats.AnnotOp.__init__"]], "annots (pypath.internals.annot_formats.annotop attribute)": [[957, "pypath.internals.annot_formats.AnnotOp.annots"]], "count() (pypath.internals.annot_formats.annotop method)": [[957, "pypath.internals.annot_formats.AnnotOp.count"]], "index() (pypath.internals.annot_formats.annotop method)": [[957, "pypath.internals.annot_formats.AnnotOp.index"]], "op (pypath.internals.annot_formats.annotop attribute)": [[957, "pypath.internals.annot_formats.AnnotOp.op"]], "annotationgroup (class in pypath.internals.annot_formats)": [[958, "pypath.internals.annot_formats.AnnotationGroup"]], "__init__() (pypath.internals.annot_formats.annotationgroup method)": [[958, "pypath.internals.annot_formats.AnnotationGroup.__init__"]], "filter_entity_type() (pypath.internals.annot_formats.annotationgroup method)": [[958, "pypath.internals.annot_formats.AnnotationGroup.filter_entity_type"]], "isdisjoint() (pypath.internals.annot_formats.annotationgroup class method)": [[958, "pypath.internals.annot_formats.AnnotationGroup.isdisjoint"]], "pypath.internals.input_formats": [[959, "module-pypath.internals.input_formats"]], "arraymapping (class in pypath.internals.input_formats)": [[960, "pypath.internals.input_formats.ArrayMapping"]], "__init__() (pypath.internals.input_formats.arraymapping method)": [[960, "pypath.internals.input_formats.ArrayMapping.__init__"]], "biomartmapping (class in pypath.internals.input_formats)": [[961, "pypath.internals.input_formats.BiomartMapping"]], "__init__() (pypath.internals.input_formats.biomartmapping method)": [[961, "pypath.internals.input_formats.BiomartMapping.__init__"]], "filemapping (class in pypath.internals.input_formats)": [[962, "pypath.internals.input_formats.FileMapping"]], "__init__() (pypath.internals.input_formats.filemapping method)": [[962, "pypath.internals.input_formats.FileMapping.__init__"]], "hmdbmapping (class in pypath.internals.input_formats)": [[963, "pypath.internals.input_formats.HmdbMapping"]], "__init__() (pypath.internals.input_formats.hmdbmapping method)": [[963, "pypath.internals.input_formats.HmdbMapping.__init__"]], "mappinginput (class in pypath.internals.input_formats)": [[964, "pypath.internals.input_formats.MappingInput"]], "__init__() (pypath.internals.input_formats.mappinginput method)": [[964, "pypath.internals.input_formats.MappingInput.__init__"]], "networkinput (class in pypath.internals.input_formats)": [[965, "pypath.internals.input_formats.NetworkInput"]], "__init__() (pypath.internals.input_formats.networkinput method)": [[965, "pypath.internals.input_formats.NetworkInput.__init__"]], "picklemapping (class in pypath.internals.input_formats)": [[966, "pypath.internals.input_formats.PickleMapping"]], "__init__() (pypath.internals.input_formats.picklemapping method)": [[966, "pypath.internals.input_formats.PickleMapping.__init__"]], "promapping (class in pypath.internals.input_formats)": [[967, "pypath.internals.input_formats.ProMapping"]], "__init__() (pypath.internals.input_formats.promapping method)": [[967, "pypath.internals.input_formats.ProMapping.__init__"]], "rampmapping (class in pypath.internals.input_formats)": [[968, "pypath.internals.input_formats.RampMapping"]], "__init__() (pypath.internals.input_formats.rampmapping method)": [[968, "pypath.internals.input_formats.RampMapping.__init__"]], "readlist (class in pypath.internals.input_formats)": [[969, "pypath.internals.input_formats.ReadList"]], "__init__() (pypath.internals.input_formats.readlist method)": [[969, "pypath.internals.input_formats.ReadList.__init__"]], "unichemmapping (class in pypath.internals.input_formats)": [[970, "pypath.internals.input_formats.UnichemMapping"]], "__init__() (pypath.internals.input_formats.unichemmapping method)": [[970, "pypath.internals.input_formats.UnichemMapping.__init__"]], "uniprotlistmapping (class in pypath.internals.input_formats)": [[971, "pypath.internals.input_formats.UniprotListMapping"]], "__init__() (pypath.internals.input_formats.uniprotlistmapping method)": [[971, "pypath.internals.input_formats.UniprotListMapping.__init__"]], "uniprotmapping (class in pypath.internals.input_formats)": [[972, "pypath.internals.input_formats.UniprotMapping"]], "__init__() (pypath.internals.input_formats.uniprotmapping method)": [[972, "pypath.internals.input_formats.UniprotMapping.__init__"]], "resource_id_type() (pypath.internals.input_formats.uniprotmapping static method)": [[972, "pypath.internals.input_formats.UniprotMapping.resource_id_type"]], "pypath.internals.intera": [[973, "module-pypath.internals.intera"]], "complex (class in pypath.internals.intera)": [[974, "pypath.internals.intera.Complex"]], "__init__() (pypath.internals.intera.complex method)": [[974, "pypath.internals.intera.Complex.__init__"]], "add_attr() (pypath.internals.intera.complex method)": [[974, "pypath.internals.intera.Complex.add_attr"]], "merge() (pypath.internals.intera.complex method)": [[974, "pypath.internals.intera.Complex.merge"]], "domain (class in pypath.internals.intera)": [[975, "pypath.internals.intera.Domain"]], "__init__() (pypath.internals.intera.domain method)": [[975, "pypath.internals.intera.Domain.__init__"]], "domaindomain (class in pypath.internals.intera)": [[976, "pypath.internals.intera.DomainDomain"]], "__init__() (pypath.internals.intera.domaindomain method)": [[976, "pypath.internals.intera.DomainDomain.__init__"]], "domainmotif (class in pypath.internals.intera)": [[977, "pypath.internals.intera.DomainMotif"]], "__init__() (pypath.internals.intera.domainmotif method)": [[977, "pypath.internals.intera.DomainMotif.__init__"]], "get_line() (pypath.internals.intera.domainmotif method)": [[977, "pypath.internals.intera.DomainMotif.get_line"]], "key() (pypath.internals.intera.domainmotif method)": [[977, "pypath.internals.intera.DomainMotif.key"]], "interface (class in pypath.internals.intera)": [[978, "pypath.internals.intera.Interface"]], "__init__() (pypath.internals.intera.interface method)": [[978, "pypath.internals.intera.Interface.__init__"]], "add_residues() (pypath.internals.intera.interface method)": [[978, "pypath.internals.intera.Interface.add_residues"]], "bond_types() (pypath.internals.intera.interface method)": [[978, "pypath.internals.intera.Interface.bond_types"]], "get_bonds() (pypath.internals.intera.interface method)": [[978, "pypath.internals.intera.Interface.get_bonds"]], "numof_residues() (pypath.internals.intera.interface method)": [[978, "pypath.internals.intera.Interface.numof_residues"]], "motif (class in pypath.internals.intera)": [[979, "pypath.internals.intera.Motif"]], "__init__() (pypath.internals.intera.motif method)": [[979, "pypath.internals.intera.Motif.__init__"]], "ptm (class in pypath.internals.intera)": [[980, "pypath.internals.intera.Ptm"]], "__init__() (pypath.internals.intera.ptm method)": [[980, "pypath.internals.intera.Ptm.__init__"]], "regulation (class in pypath.internals.intera)": [[981, "pypath.internals.intera.Regulation"]], "__init__() (pypath.internals.intera.regulation method)": [[981, "pypath.internals.intera.Regulation.__init__"]], "residue (class in pypath.internals.intera)": [[982, "pypath.internals.intera.Residue"]], "__init__() (pypath.internals.intera.residue method)": [[982, "pypath.internals.intera.Residue.__init__"]], "pypath.internals.license": [[983, "module-pypath.internals.license"]], "license (class in pypath.internals.license)": [[984, "pypath.internals.license.License"]], "__init__() (pypath.internals.license.license method)": [[984, "pypath.internals.license.License.__init__"]], "enables() (pypath.internals.license.license method)": [[984, "pypath.internals.license.License.enables"]], "licenseattrib (class in pypath.internals.license)": [[985, "pypath.internals.license.LicenseAttrib"]], "__init__() (pypath.internals.license.licenseattrib method)": [[985, "pypath.internals.license.LicenseAttrib.__init__"]], "check_level() (pypath.internals.license.licenseattrib class method)": [[985, "pypath.internals.license.LicenseAttrib.check_level"]], "int_to_level() (pypath.internals.license.licenseattrib class method)": [[985, "pypath.internals.license.LicenseAttrib.int_to_level"]], "level_to_int() (pypath.internals.license.licenseattrib class method)": [[985, "pypath.internals.license.LicenseAttrib.level_to_int"]], "to_int() (pypath.internals.license.licenseattrib method)": [[985, "pypath.internals.license.LicenseAttrib.to_int"]], "licensefeature (class in pypath.internals.license)": [[986, "pypath.internals.license.LicenseFeature"]], "__init__() (pypath.internals.license.licensefeature method)": [[986, "pypath.internals.license.LicenseFeature.__init__"]], "check_level() (pypath.internals.license.licensefeature class method)": [[986, "pypath.internals.license.LicenseFeature.check_level"]], "int_to_level() (pypath.internals.license.licensefeature class method)": [[986, "pypath.internals.license.LicenseFeature.int_to_level"]], "level_to_int() (pypath.internals.license.licensefeature class method)": [[986, "pypath.internals.license.LicenseFeature.level_to_int"]], "to_int() (pypath.internals.license.licensefeature method)": [[986, "pypath.internals.license.LicenseFeature.to_int"]], "licensepurpose (class in pypath.internals.license)": [[987, "pypath.internals.license.LicensePurpose"]], "__init__() (pypath.internals.license.licensepurpose method)": [[987, "pypath.internals.license.LicensePurpose.__init__"]], "check_level() (pypath.internals.license.licensepurpose class method)": [[987, "pypath.internals.license.LicensePurpose.check_level"]], "int_to_level() (pypath.internals.license.licensepurpose class method)": [[987, "pypath.internals.license.LicensePurpose.int_to_level"]], "level_to_int() (pypath.internals.license.licensepurpose class method)": [[987, "pypath.internals.license.LicensePurpose.level_to_int"]], "to_int() (pypath.internals.license.licensepurpose method)": [[987, "pypath.internals.license.LicensePurpose.to_int"]], "licensesharing (class in pypath.internals.license)": [[988, "pypath.internals.license.LicenseSharing"]], "__init__() (pypath.internals.license.licensesharing method)": [[988, "pypath.internals.license.LicenseSharing.__init__"]], "check_level() (pypath.internals.license.licensesharing class method)": [[988, "pypath.internals.license.LicenseSharing.check_level"]], "int_to_level() (pypath.internals.license.licensesharing class method)": [[988, "pypath.internals.license.LicenseSharing.int_to_level"]], "level_to_int() (pypath.internals.license.licensesharing class method)": [[988, "pypath.internals.license.LicenseSharing.level_to_int"]], "to_int() (pypath.internals.license.licensesharing method)": [[988, "pypath.internals.license.LicenseSharing.to_int"]], "pypath.internals.maps": [[989, "module-pypath.internals.maps"]], "pypath.internals.refs": [[990, "module-pypath.internals.refs"]], "reference (class in pypath.internals.refs)": [[991, "pypath.internals.refs.Reference"]], "__init__() (pypath.internals.refs.reference method)": [[991, "pypath.internals.refs.Reference.__init__"]], "get_pubmed_data() (in module pypath.internals.refs)": [[992, "pypath.internals.refs.get_pubmed_data"]], "pypath.internals.resource": [[993, "module-pypath.internals.resource"]], "abstractresource (class in pypath.internals.resource)": [[994, "pypath.internals.resource.AbstractResource"]], "__init__() (pypath.internals.resource.abstractresource method)": [[994, "pypath.internals.resource.AbstractResource.__init__"]], "load_data() (pypath.internals.resource.abstractresource method)": [[994, "pypath.internals.resource.AbstractResource.load_data"]], "process() (pypath.internals.resource.abstractresource method)": [[994, "pypath.internals.resource.AbstractResource.process"]], "set_method() (pypath.internals.resource.abstractresource method)": [[994, "pypath.internals.resource.AbstractResource.set_method"]], "enzymesubstrateresource (class in pypath.internals.resource)": [[995, "pypath.internals.resource.EnzymeSubstrateResource"]], "__init__() (pypath.internals.resource.enzymesubstrateresource method)": [[995, "pypath.internals.resource.EnzymeSubstrateResource.__init__"]], "get_via() (pypath.internals.resource.enzymesubstrateresource method)": [[995, "pypath.internals.resource.EnzymeSubstrateResource.get_via"]], "enzymesubstrateresourcekey (class in pypath.internals.resource)": [[996, "pypath.internals.resource.EnzymeSubstrateResourceKey"]], "__init__() (pypath.internals.resource.enzymesubstrateresourcekey method)": [[996, "pypath.internals.resource.EnzymeSubstrateResourceKey.__init__"]], "count() (pypath.internals.resource.enzymesubstrateresourcekey method)": [[996, "pypath.internals.resource.EnzymeSubstrateResourceKey.count"]], "data_type (pypath.internals.resource.enzymesubstrateresourcekey attribute)": [[996, "pypath.internals.resource.EnzymeSubstrateResourceKey.data_type"]], "index() (pypath.internals.resource.enzymesubstrateresourcekey method)": [[996, "pypath.internals.resource.EnzymeSubstrateResourceKey.index"]], "name (pypath.internals.resource.enzymesubstrateresourcekey attribute)": [[996, "pypath.internals.resource.EnzymeSubstrateResourceKey.name"]], "via (pypath.internals.resource.enzymesubstrateresourcekey attribute)": [[996, "pypath.internals.resource.EnzymeSubstrateResourceKey.via"]], "networkdataset (class in pypath.internals.resource)": [[997, "pypath.internals.resource.NetworkDataset"]], "__init__() (pypath.internals.resource.networkdataset method)": [[997, "pypath.internals.resource.NetworkDataset.__init__"]], "clear() (pypath.internals.resource.networkdataset method)": [[997, "pypath.internals.resource.NetworkDataset.clear"]], "get() (pypath.internals.resource.networkdataset method)": [[997, "pypath.internals.resource.NetworkDataset.get"]], "items() (pypath.internals.resource.networkdataset method)": [[997, "pypath.internals.resource.NetworkDataset.items"]], "keys() (pypath.internals.resource.networkdataset method)": [[997, "pypath.internals.resource.NetworkDataset.keys"]], "pop() (pypath.internals.resource.networkdataset method)": [[997, "pypath.internals.resource.NetworkDataset.pop"]], "popitem() (pypath.internals.resource.networkdataset method)": [[997, "pypath.internals.resource.NetworkDataset.popitem"]], "setdefault() (pypath.internals.resource.networkdataset method)": [[997, "pypath.internals.resource.NetworkDataset.setdefault"]], "update() (pypath.internals.resource.networkdataset method)": [[997, "pypath.internals.resource.NetworkDataset.update"]], "values() (pypath.internals.resource.networkdataset method)": [[997, "pypath.internals.resource.NetworkDataset.values"]], "networkresource (class in pypath.internals.resource)": [[998, "pypath.internals.resource.NetworkResource"]], "__init__() (pypath.internals.resource.networkresource method)": [[998, "pypath.internals.resource.NetworkResource.__init__"]], "networkresourcekey (class in pypath.internals.resource)": [[999, "pypath.internals.resource.NetworkResourceKey"]], "__init__() (pypath.internals.resource.networkresourcekey method)": [[999, "pypath.internals.resource.NetworkResourceKey.__init__"]], "count() (pypath.internals.resource.networkresourcekey method)": [[999, "pypath.internals.resource.NetworkResourceKey.count"]], "data_model (pypath.internals.resource.networkresourcekey attribute)": [[999, "pypath.internals.resource.NetworkResourceKey.data_model"]], "data_type (pypath.internals.resource.networkresourcekey attribute)": [[999, "pypath.internals.resource.NetworkResourceKey.data_type"]], "index() (pypath.internals.resource.networkresourcekey method)": [[999, "pypath.internals.resource.NetworkResourceKey.index"]], "interaction_type (pypath.internals.resource.networkresourcekey attribute)": [[999, "pypath.internals.resource.NetworkResourceKey.interaction_type"]], "label (pypath.internals.resource.networkresourcekey property)": [[999, "pypath.internals.resource.NetworkResourceKey.label"]], "last (pypath.internals.resource.networkresourcekey property)": [[999, "pypath.internals.resource.NetworkResourceKey.last"]], "name (pypath.internals.resource.networkresourcekey attribute)": [[999, "pypath.internals.resource.NetworkResourceKey.name"]], "via (pypath.internals.resource.networkresourcekey attribute)": [[999, "pypath.internals.resource.NetworkResourceKey.via"]], "resourceattributes (class in pypath.internals.resource)": [[1000, "pypath.internals.resource.ResourceAttributes"]], "__init__() (pypath.internals.resource.resourceattributes method)": [[1000, "pypath.internals.resource.ResourceAttributes.__init__"]], "pypath.legacy": [[1001, "module-pypath.legacy"]], "pypath.legacy.db_categories": [[1002, "module-pypath.legacy.db_categories"]], "get_categories() (in module pypath.legacy.db_categories)": [[1003, "pypath.legacy.db_categories.get_categories"]], "get_category() (in module pypath.legacy.db_categories)": [[1004, "pypath.legacy.db_categories.get_category"]], "log() (in module pypath)": [[1005, "pypath.log"]], "pypath.resources": [[1006, "module-pypath.resources"]], "pypath.resources.controller": [[1007, "module-pypath.resources.controller"]], "resourcecontroller (class in pypath.resources.controller)": [[1008, "pypath.resources.controller.ResourceController"]], "__init__() (pypath.resources.controller.resourcecontroller method)": [[1008, "pypath.resources.controller.ResourceController.__init__"]], "add_resource_attrs() (pypath.resources.controller.resourcecontroller method)": [[1008, "pypath.resources.controller.ResourceController.add_resource_attrs"]], "collect_interaction() (pypath.resources.controller.resourcecontroller method)": [[1008, "pypath.resources.controller.ResourceController.collect_interaction"]], "collect_network() (pypath.resources.controller.resourcecontroller method)": [[1008, "pypath.resources.controller.ResourceController.collect_network"]], "license_filter() (pypath.resources.controller.resourcecontroller method)": [[1008, "pypath.resources.controller.ResourceController.license_filter"]], "secondary_resources() (pypath.resources.controller.resourcecontroller method)": [[1008, "pypath.resources.controller.ResourceController.secondary_resources"]], "update() (pypath.resources.controller.resourcecontroller method)": [[1008, "pypath.resources.controller.ResourceController.update"]], "pypath.resources.data": [[1009, "module-pypath.resources.data"]], "pypath.resources.data_formats": [[1010, "module-pypath.resources.data_formats"]], "activity_flow (in module pypath.resources.data_formats)": [[1011, "pypath.resources.data_formats.activity_flow"]], "enzyme_substrate (in module pypath.resources.data_formats)": [[1012, "pypath.resources.data_formats.enzyme_substrate"]], "interaction (in module pypath.resources.data_formats)": [[1013, "pypath.resources.data_formats.interaction"]], "interaction_htp (in module pypath.resources.data_formats)": [[1014, "pypath.resources.data_formats.interaction_htp"]], "pathway_bad (in module pypath.resources.data_formats)": [[1015, "pypath.resources.data_formats.pathway_bad"]], "reaction_pc (in module pypath.resources.data_formats)": [[1016, "pypath.resources.data_formats.reaction_pc"]], "transcription_deprecated (in module pypath.resources.data_formats)": [[1017, "pypath.resources.data_formats.transcription_deprecated"]], "transcription_onebyone (in module pypath.resources.data_formats)": [[1018, "pypath.resources.data_formats.transcription_onebyone"]], "get_controller() (in module pypath.resources)": [[1019, "pypath.resources.get_controller"]], "pypath.resources.licenses": [[1020, "module-pypath.resources.licenses"]], "licenses (class in pypath.resources.licenses)": [[1021, "pypath.resources.licenses.Licenses"]], "__init__() (pypath.resources.licenses.licenses method)": [[1021, "pypath.resources.licenses.Licenses.__init__"]], "pypath.resources.network": [[1022, "module-pypath.resources.network"]], "choose_dataset() (in module pypath.resources.network)": [[1023, "pypath.resources.network.choose_dataset"]], "dataset_priority() (in module pypath.resources.network)": [[1024, "pypath.resources.network.dataset_priority"]], "dorothea_expand_levels() (in module pypath.resources.network)": [[1025, "pypath.resources.network.dorothea_expand_levels"]], "pypath.resources.urls": [[1026, "module-pypath.resources.urls"]], "pypath.share": [[1027, "module-pypath.share"]], "pypath.share.cache": [[1028, "module-pypath.share.cache"]], "cache_item() (in module pypath.share.cache)": [[1029, "pypath.share.cache.cache_item"]], "cache_path() (in module pypath.share.cache)": [[1030, "pypath.share.cache.cache_path"]], "default_cachedir() (in module pypath.share.cache)": [[1031, "pypath.share.cache.default_cachedir"]], "get_cachedir() (in module pypath.share.cache)": [[1032, "pypath.share.cache.get_cachedir"]], "pypath.share.common": [[1033, "module-pypath.share.common"]], "pypath.share.constants": [[1034, "module-pypath.share.constants"]], "pypath.share.curl": [[1035, "module-pypath.share.curl"]], "curl (class in pypath.share.curl)": [[1036, "pypath.share.curl.Curl"]], "__init__() (pypath.share.curl.curl method)": [[1036, "pypath.share.curl.Curl.__init__"]], "cache_path() (pypath.share.curl.curl class method)": [[1036, "pypath.share.curl.Curl.cache_path"]], "close() (pypath.share.curl.curl method)": [[1036, "pypath.share.curl.Curl.close"]], "construct_binary_data() (pypath.share.curl.curl method)": [[1036, "pypath.share.curl.Curl.construct_binary_data"]], "extract() (pypath.share.curl.curl method)": [[1036, "pypath.share.curl.Curl.extract"]], "is_quoted() (pypath.share.curl.curl method)": [[1036, "pypath.share.curl.Curl.is_quoted"]], "open() (pypath.share.curl.curl method)": [[1036, "pypath.share.curl.Curl.open"]], "open_tgz() (pypath.share.curl.curl method)": [[1036, "pypath.share.curl.Curl.open_tgz"]], "replace_forbidden() (pypath.share.curl.curl class method)": [[1036, "pypath.share.curl.Curl.replace_forbidden"]], "set_binary_data() (pypath.share.curl.curl method)": [[1036, "pypath.share.curl.Curl.set_binary_data"]], "url_fix() (pypath.share.curl.curl method)": [[1036, "pypath.share.curl.Curl.url_fix"]], "fileopener (class in pypath.share.curl)": [[1037, "pypath.share.curl.FileOpener"]], "__init__() (pypath.share.curl.fileopener method)": [[1037, "pypath.share.curl.FileOpener.__init__"]], "extract() (pypath.share.curl.fileopener method)": [[1037, "pypath.share.curl.FileOpener.extract"]], "open() (pypath.share.curl.fileopener method)": [[1037, "pypath.share.curl.FileOpener.open"]], "open_tgz() (pypath.share.curl.fileopener method)": [[1037, "pypath.share.curl.FileOpener.open_tgz"]], "remotefile (class in pypath.share.curl)": [[1038, "pypath.share.curl.RemoteFile"]], "__init__() (pypath.share.curl.remotefile method)": [[1038, "pypath.share.curl.RemoteFile.__init__"]], "__init__() (pypath.share.curl.cache_delete_off method)": [[1039, "pypath.share.curl.cache_delete_off.__init__"]], "cache_delete_off (class in pypath.share.curl)": [[1039, "pypath.share.curl.cache_delete_off"]], "__init__() (pypath.share.curl.cache_delete_on method)": [[1040, "pypath.share.curl.cache_delete_on.__init__"]], "cache_delete_on (class in pypath.share.curl)": [[1040, "pypath.share.curl.cache_delete_on"]], "__init__() (pypath.share.curl.cache_off method)": [[1041, "pypath.share.curl.cache_off.__init__"]], "cache_off (class in pypath.share.curl)": [[1041, "pypath.share.curl.cache_off"]], "__init__() (pypath.share.curl.cache_on method)": [[1042, "pypath.share.curl.cache_on.__init__"]], "cache_on (class in pypath.share.curl)": [[1042, "pypath.share.curl.cache_on"]], "__init__() (pypath.share.curl.cache_print_off method)": [[1043, "pypath.share.curl.cache_print_off.__init__"]], "cache_print_off (class in pypath.share.curl)": [[1043, "pypath.share.curl.cache_print_off"]], "__init__() (pypath.share.curl.cache_print_on method)": [[1044, "pypath.share.curl.cache_print_on.__init__"]], "cache_print_on (class in pypath.share.curl)": [[1044, "pypath.share.curl.cache_print_on"]], "__init__() (pypath.share.curl.debug_off method)": [[1045, "pypath.share.curl.debug_off.__init__"]], "debug_off (class in pypath.share.curl)": [[1045, "pypath.share.curl.debug_off"]], "__init__() (pypath.share.curl.debug_on method)": [[1046, "pypath.share.curl.debug_on.__init__"]], "debug_on (class in pypath.share.curl)": [[1046, "pypath.share.curl.debug_on"]], "__init__() (pypath.share.curl.dryrun_off method)": [[1047, "pypath.share.curl.dryrun_off.__init__"]], "dryrun_off (class in pypath.share.curl)": [[1047, "pypath.share.curl.dryrun_off"]], "__init__() (pypath.share.curl.dryrun_on method)": [[1048, "pypath.share.curl.dryrun_on.__init__"]], "dryrun_on (class in pypath.share.curl)": [[1048, "pypath.share.curl.dryrun_on"]], "is_url() (in module pypath.share.curl)": [[1049, "pypath.share.curl.is_url"]], "__init__() (pypath.share.curl.preserve_off method)": [[1050, "pypath.share.curl.preserve_off.__init__"]], "preserve_off (class in pypath.share.curl)": [[1050, "pypath.share.curl.preserve_off"]], "__init__() (pypath.share.curl.preserve_on method)": [[1051, "pypath.share.curl.preserve_on.__init__"]], "preserve_on (class in pypath.share.curl)": [[1051, "pypath.share.curl.preserve_on"]], "pypath.share.progress": [[1052, "module-pypath.share.progress"]], "progress (class in pypath.share.progress)": [[1053, "pypath.share.progress.Progress"]], "__init__() (pypath.share.progress.progress method)": [[1053, "pypath.share.progress.Progress.__init__"]], "get_desc() (pypath.share.progress.progress method)": [[1053, "pypath.share.progress.Progress.get_desc"]], "init_tqdm() (pypath.share.progress.progress method)": [[1053, "pypath.share.progress.Progress.init_tqdm"]], "set_done() (pypath.share.progress.progress method)": [[1053, "pypath.share.progress.Progress.set_done"]], "set_status() (pypath.share.progress.progress method)": [[1053, "pypath.share.progress.Progress.set_status"]], "set_total() (pypath.share.progress.progress method)": [[1053, "pypath.share.progress.Progress.set_total"]], "step() (pypath.share.progress.progress method)": [[1053, "pypath.share.progress.Progress.step"]], "terminate() (pypath.share.progress.progress method)": [[1053, "pypath.share.progress.Progress.terminate"]], "pypath.share.session": [[1054, "module-pypath.share.session"]], "pypath.share.settings": [[1055, "module-pypath.share.settings"]], "pypath.utils": [[1056, "module-pypath.utils"]], "pypath.utils.go": [[1057, "module-pypath.utils.go"]], "goannotation (class in pypath.utils.go)": [[1058, "pypath.utils.go.GOAnnotation"]], "__init__() (pypath.utils.go.goannotation method)": [[1058, "pypath.utils.go.GOAnnotation.__init__"]], "all_uniprots() (pypath.utils.go.goannotation method)": [[1058, "pypath.utils.go.GOAnnotation.all_uniprots"]], "expr_names_to_terms() (pypath.utils.go.goannotation method)": [[1058, "pypath.utils.go.GOAnnotation.expr_names_to_terms"]], "get_annot() (pypath.utils.go.goannotation method)": [[1058, "pypath.utils.go.GOAnnotation.get_annot"]], "get_annot_ancestors() (pypath.utils.go.goannotation method)": [[1058, "pypath.utils.go.GOAnnotation.get_annot_ancestors"]], "get_annots() (pypath.utils.go.goannotation method)": [[1058, "pypath.utils.go.GOAnnotation.get_annots"]], "get_annots_ancestors() (pypath.utils.go.goannotation method)": [[1058, "pypath.utils.go.GOAnnotation.get_annots_ancestors"]], "get_name() (pypath.utils.go.goannotation method)": [[1058, "pypath.utils.go.GOAnnotation.get_name"]], "get_term() (pypath.utils.go.goannotation method)": [[1058, "pypath.utils.go.GOAnnotation.get_term"]], "has_any_term() (pypath.utils.go.goannotation method)": [[1058, "pypath.utils.go.GOAnnotation.has_any_term"]], "has_term() (pypath.utils.go.goannotation method)": [[1058, "pypath.utils.go.GOAnnotation.has_term"]], "i_select_by_term() (pypath.utils.go.goannotation method)": [[1058, "pypath.utils.go.GOAnnotation.i_select_by_term"]], "reload() (pypath.utils.go.goannotation method)": [[1058, "pypath.utils.go.GOAnnotation.reload"]], "select() (pypath.utils.go.goannotation method)": [[1058, "pypath.utils.go.GOAnnotation.select"]], "select_by_all() (pypath.utils.go.goannotation method)": [[1058, "pypath.utils.go.GOAnnotation.select_by_all"]], "select_by_expr() (pypath.utils.go.goannotation method)": [[1058, "pypath.utils.go.GOAnnotation.select_by_expr"]], "select_by_expr_terms() (pypath.utils.go.goannotation method)": [[1058, "pypath.utils.go.GOAnnotation.select_by_expr_terms"]], "select_by_name() (pypath.utils.go.goannotation method)": [[1058, "pypath.utils.go.GOAnnotation.select_by_name"]], "select_by_term() (pypath.utils.go.goannotation method)": [[1058, "pypath.utils.go.GOAnnotation.select_by_term"]], "gocustomannotation (class in pypath.utils.go)": [[1059, "pypath.utils.go.GOCustomAnnotation"]], "__init__() (pypath.utils.go.gocustomannotation method)": [[1059, "pypath.utils.go.GOCustomAnnotation.__init__"]], "get_annotation() (pypath.utils.go.gocustomannotation method)": [[1059, "pypath.utils.go.GOCustomAnnotation.get_annotation"]], "get_annotations() (pypath.utils.go.gocustomannotation method)": [[1059, "pypath.utils.go.GOCustomAnnotation.get_annotations"]], "process_categories() (pypath.utils.go.gocustomannotation method)": [[1059, "pypath.utils.go.GOCustomAnnotation.process_categories"]], "reload() (pypath.utils.go.gocustomannotation method)": [[1059, "pypath.utils.go.GOCustomAnnotation.reload"]], "geneontology (class in pypath.utils.go)": [[1060, "pypath.utils.go.GeneOntology"]], "__init__() (pypath.utils.go.geneontology method)": [[1060, "pypath.utils.go.GeneOntology.__init__"]], "all_from_aspect() (pypath.utils.go.geneontology method)": [[1060, "pypath.utils.go.GeneOntology.all_from_aspect"]], "aspect_from_name() (pypath.utils.go.geneontology method)": [[1060, "pypath.utils.go.GeneOntology.aspect_from_name"]], "flatten() (pypath.utils.go.geneontology method)": [[1060, "pypath.utils.go.GeneOntology.flatten"]], "get_all_ancestors() (pypath.utils.go.geneontology method)": [[1060, "pypath.utils.go.GeneOntology.get_all_ancestors"]], "get_all_descendants() (pypath.utils.go.geneontology method)": [[1060, "pypath.utils.go.GeneOntology.get_all_descendants"]], "get_aspect() (pypath.utils.go.geneontology method)": [[1060, "pypath.utils.go.GeneOntology.get_aspect"]], "get_name() (pypath.utils.go.geneontology method)": [[1060, "pypath.utils.go.GeneOntology.get_name"]], "get_term() (pypath.utils.go.geneontology method)": [[1060, "pypath.utils.go.GeneOntology.get_term"]], "highest() (pypath.utils.go.geneontology method)": [[1060, "pypath.utils.go.GeneOntology.highest"]], "is_leaf() (pypath.utils.go.geneontology method)": [[1060, "pypath.utils.go.GeneOntology.is_leaf"]], "is_name() (pypath.utils.go.geneontology method)": [[1060, "pypath.utils.go.GeneOntology.is_name"]], "is_root() (pypath.utils.go.geneontology method)": [[1060, "pypath.utils.go.GeneOntology.is_root"]], "is_term() (pypath.utils.go.geneontology method)": [[1060, "pypath.utils.go.GeneOntology.is_term"]], "lowest() (pypath.utils.go.geneontology method)": [[1060, "pypath.utils.go.GeneOntology.lowest"]], "names_to_terms() (pypath.utils.go.geneontology method)": [[1060, "pypath.utils.go.GeneOntology.names_to_terms"]], "names_to_terms_aspects() (pypath.utils.go.geneontology method)": [[1060, "pypath.utils.go.GeneOntology.names_to_terms_aspects"]], "reload() (pypath.utils.go.geneontology method)": [[1060, "pypath.utils.go.GeneOntology.reload"]], "set_of() (pypath.utils.go.geneontology method)": [[1060, "pypath.utils.go.GeneOntology.set_of"]], "set_of_names() (pypath.utils.go.geneontology method)": [[1060, "pypath.utils.go.GeneOntology.set_of_names"]], "set_of_terms() (pypath.utils.go.geneontology method)": [[1060, "pypath.utils.go.GeneOntology.set_of_terms"]], "subgraph_nodes() (pypath.utils.go.geneontology method)": [[1060, "pypath.utils.go.GeneOntology.subgraph_nodes"]], "terms_to_names() (pypath.utils.go.geneontology method)": [[1060, "pypath.utils.go.GeneOntology.terms_to_names"]], "terms_to_names_aspects() (pypath.utils.go.geneontology method)": [[1060, "pypath.utils.go.GeneOntology.terms_to_names_aspects"]], "annotate() (in module pypath.utils.go)": [[1061, "pypath.utils.go.annotate"]], "get_db() (in module pypath.utils.go)": [[1062, "pypath.utils.go.get_db"]], "init_db() (in module pypath.utils.go)": [[1063, "pypath.utils.go.init_db"]], "load_go() (in module pypath.utils.go)": [[1064, "pypath.utils.go.load_go"]], "pypath.utils.mapping": [[1065, "module-pypath.utils.mapping"]], "mapreader (class in pypath.utils.mapping)": [[1066, "pypath.utils.mapping.MapReader"]], "__init__() (pypath.utils.mapping.mapreader method)": [[1066, "pypath.utils.mapping.MapReader.__init__"]], "id_type_side() (pypath.utils.mapping.mapreader method)": [[1066, "pypath.utils.mapping.MapReader.id_type_side"]], "load() (pypath.utils.mapping.mapreader method)": [[1066, "pypath.utils.mapping.MapReader.load"]], "mapping_table_a_to_b (pypath.utils.mapping.mapreader property)": [[1066, "pypath.utils.mapping.MapReader.mapping_table_a_to_b"]], "mapping_table_b_to_a (pypath.utils.mapping.mapreader property)": [[1066, "pypath.utils.mapping.MapReader.mapping_table_b_to_a"]], "read() (pypath.utils.mapping.mapreader method)": [[1066, "pypath.utils.mapping.MapReader.read"]], "read_cache() (pypath.utils.mapping.mapreader method)": [[1066, "pypath.utils.mapping.MapReader.read_cache"]], "read_mapping_array() (pypath.utils.mapping.mapreader method)": [[1066, "pypath.utils.mapping.MapReader.read_mapping_array"]], "read_mapping_biomart() (pypath.utils.mapping.mapreader method)": [[1066, "pypath.utils.mapping.MapReader.read_mapping_biomart"]], "read_mapping_file() (pypath.utils.mapping.mapreader method)": [[1066, "pypath.utils.mapping.MapReader.read_mapping_file"]], "read_mapping_hmdb() (pypath.utils.mapping.mapreader method)": [[1066, "pypath.utils.mapping.MapReader.read_mapping_hmdb"]], "read_mapping_ramp() (pypath.utils.mapping.mapreader method)": [[1066, "pypath.utils.mapping.MapReader.read_mapping_ramp"]], "read_mapping_unichem() (pypath.utils.mapping.mapreader method)": [[1066, "pypath.utils.mapping.MapReader.read_mapping_unichem"]], "read_mapping_uniprot() (pypath.utils.mapping.mapreader method)": [[1066, "pypath.utils.mapping.MapReader.read_mapping_uniprot"]], "read_mapping_uniprot_list() (pypath.utils.mapping.mapreader method)": [[1066, "pypath.utils.mapping.MapReader.read_mapping_uniprot_list"]], "resource_id_type() (pypath.utils.mapping.mapreader method)": [[1066, "pypath.utils.mapping.MapReader.resource_id_type"]], "set_uniprot_space() (pypath.utils.mapping.mapreader method)": [[1066, "pypath.utils.mapping.MapReader.set_uniprot_space"]], "setup_cache() (pypath.utils.mapping.mapreader method)": [[1066, "pypath.utils.mapping.MapReader.setup_cache"]], "tables_loaded() (pypath.utils.mapping.mapreader method)": [[1066, "pypath.utils.mapping.MapReader.tables_loaded"]], "write_cache() (pypath.utils.mapping.mapreader method)": [[1066, "pypath.utils.mapping.MapReader.write_cache"]], "mapper (class in pypath.utils.mapping)": [[1067, "pypath.utils.mapping.Mapper"]], "__init__() (pypath.utils.mapping.mapper method)": [[1067, "pypath.utils.mapping.Mapper.__init__"]], "chain_map() (pypath.utils.mapping.mapper method)": [[1067, "pypath.utils.mapping.Mapper.chain_map"]], "create_reverse() (pypath.utils.mapping.mapper method)": [[1067, "pypath.utils.mapping.Mapper.create_reverse"]], "get_table_key() (pypath.utils.mapping.mapper method)": [[1067, "pypath.utils.mapping.Mapper.get_table_key"]], "guess_type() (pypath.utils.mapping.mapper method)": [[1067, "pypath.utils.mapping.Mapper.guess_type"]], "has_mapping_table() (pypath.utils.mapping.mapper method)": [[1067, "pypath.utils.mapping.Mapper.has_mapping_table"]], "id_types() (pypath.utils.mapping.mapper class method)": [[1067, "pypath.utils.mapping.Mapper.id_types"]], "identifier() (pypath.utils.mapping.mapper method)": [[1067, "pypath.utils.mapping.Mapper.identifier"]], "label() (pypath.utils.mapping.mapper method)": [[1067, "pypath.utils.mapping.Mapper.label"]], "load_genesymbol5() (pypath.utils.mapping.mapper method)": [[1067, "pypath.utils.mapping.Mapper.load_genesymbol5"]], "load_mapping() (pypath.utils.mapping.mapper method)": [[1067, "pypath.utils.mapping.Mapper.load_mapping"]], "load_uniprot_static() (pypath.utils.mapping.mapper method)": [[1067, "pypath.utils.mapping.Mapper.load_uniprot_static"]], "map_name() (pypath.utils.mapping.mapper method)": [[1067, "pypath.utils.mapping.Mapper.map_name"]], "map_name0() (pypath.utils.mapping.mapper method)": [[1067, "pypath.utils.mapping.Mapper.map_name0"]], "map_names() (pypath.utils.mapping.mapper method)": [[1067, "pypath.utils.mapping.Mapper.map_names"]], "mapping_tables() (pypath.utils.mapping.mapper static method)": [[1067, "pypath.utils.mapping.Mapper.mapping_tables"]], "only_uniprot_ac() (pypath.utils.mapping.mapper method)": [[1067, "pypath.utils.mapping.Mapper.only_uniprot_ac"]], "other_organism_uniprot() (pypath.utils.mapping.mapper method)": [[1067, "pypath.utils.mapping.Mapper.other_organism_uniprot"]], "primary_uniprot() (pypath.utils.mapping.mapper method)": [[1067, "pypath.utils.mapping.Mapper.primary_uniprot"]], "reload() (pypath.utils.mapping.mapper method)": [[1067, "pypath.utils.mapping.Mapper.reload"]], "remove_expired() (pypath.utils.mapping.mapper method)": [[1067, "pypath.utils.mapping.Mapper.remove_expired"]], "remove_key() (pypath.utils.mapping.mapper method)": [[1067, "pypath.utils.mapping.Mapper.remove_key"]], "remove_table() (pypath.utils.mapping.mapper method)": [[1067, "pypath.utils.mapping.Mapper.remove_table"]], "reverse_key() (pypath.utils.mapping.mapper method)": [[1067, "pypath.utils.mapping.Mapper.reverse_key"]], "reverse_mapping() (pypath.utils.mapping.mapper static method)": [[1067, "pypath.utils.mapping.Mapper.reverse_mapping"]], "swissprots() (pypath.utils.mapping.mapper method)": [[1067, "pypath.utils.mapping.Mapper.swissprots"]], "translate_deleted_uniprot_by_genesymbol() (pypath.utils.mapping.mapper method)": [[1067, "pypath.utils.mapping.Mapper.translate_deleted_uniprot_by_genesymbol"]], "translation_df() (pypath.utils.mapping.mapper method)": [[1067, "pypath.utils.mapping.Mapper.translation_df"]], "translation_dict() (pypath.utils.mapping.mapper method)": [[1067, "pypath.utils.mapping.Mapper.translation_dict"]], "trembl_swissprot() (pypath.utils.mapping.mapper method)": [[1067, "pypath.utils.mapping.Mapper.trembl_swissprot"]], "uniprot_cleanup() (pypath.utils.mapping.mapper method)": [[1067, "pypath.utils.mapping.Mapper.uniprot_cleanup"]], "valid_uniprot() (pypath.utils.mapping.mapper method)": [[1067, "pypath.utils.mapping.Mapper.valid_uniprot"]], "which_table() (pypath.utils.mapping.mapper method)": [[1067, "pypath.utils.mapping.Mapper.which_table"]], "mappingtable (class in pypath.utils.mapping)": [[1068, "pypath.utils.mapping.MappingTable"]], "__init__() (pypath.utils.mapping.mappingtable method)": [[1068, "pypath.utils.mapping.MappingTable.__init__"]], "get_key() (pypath.utils.mapping.mappingtable method)": [[1068, "pypath.utils.mapping.MappingTable.get_key"]], "mappingtablekey (class in pypath.utils.mapping)": [[1069, "pypath.utils.mapping.MappingTableKey"]], "__init__() (pypath.utils.mapping.mappingtablekey method)": [[1069, "pypath.utils.mapping.MappingTableKey.__init__"]], "count() (pypath.utils.mapping.mappingtablekey method)": [[1069, "pypath.utils.mapping.MappingTableKey.count"]], "id_type (pypath.utils.mapping.mappingtablekey attribute)": [[1069, "pypath.utils.mapping.MappingTableKey.id_type"]], "index() (pypath.utils.mapping.mappingtablekey method)": [[1069, "pypath.utils.mapping.MappingTableKey.index"]], "ncbi_tax_id (pypath.utils.mapping.mappingtablekey attribute)": [[1069, "pypath.utils.mapping.MappingTableKey.ncbi_tax_id"]], "target_id_type (pypath.utils.mapping.mappingtablekey attribute)": [[1069, "pypath.utils.mapping.MappingTableKey.target_id_type"]], "uniprot_id_types (in module pypath.utils.mapping)": [[1070, "pypath.utils.mapping.UNIPROT_ID_TYPES"]], "get_mapper() (in module pypath.utils.mapping)": [[1071, "pypath.utils.mapping.get_mapper"]], "guess_type() (in module pypath.utils.mapping)": [[1072, "pypath.utils.mapping.guess_type"]], "id_from_label() (in module pypath.utils.mapping)": [[1073, "pypath.utils.mapping.id_from_label"]], "id_from_label0() (in module pypath.utils.mapping)": [[1074, "pypath.utils.mapping.id_from_label0"]], "id_types() (in module pypath.utils.mapping)": [[1075, "pypath.utils.mapping.id_types"]], "init() (in module pypath.utils.mapping)": [[1076, "pypath.utils.mapping.init"]], "label() (in module pypath.utils.mapping)": [[1077, "pypath.utils.mapping.label"]], "map_name() (in module pypath.utils.mapping)": [[1078, "pypath.utils.mapping.map_name"]], "map_name0() (in module pypath.utils.mapping)": [[1079, "pypath.utils.mapping.map_name0"]], "map_names() (in module pypath.utils.mapping)": [[1080, "pypath.utils.mapping.map_names"]], "mapping_tables() (in module pypath.utils.mapping)": [[1081, "pypath.utils.mapping.mapping_tables"]], "translation_df() (in module pypath.utils.mapping)": [[1082, "pypath.utils.mapping.translation_df"]], "translation_dict() (in module pypath.utils.mapping)": [[1083, "pypath.utils.mapping.translation_dict"]], "pypath.utils.metabo": [[1084, "module-pypath.utils.metabo"]], "pypath.utils.orthology": [[1085, "module-pypath.utils.orthology"]], "ensemblortholog (class in pypath.utils.orthology)": [[1086, "pypath.utils.orthology.EnsemblOrtholog"]], "__init__() (pypath.utils.orthology.ensemblortholog method)": [[1086, "pypath.utils.orthology.EnsemblOrtholog.__init__"]], "count() (pypath.utils.orthology.ensemblortholog method)": [[1086, "pypath.utils.orthology.EnsemblOrtholog.count"]], "hc (pypath.utils.orthology.ensemblortholog attribute)": [[1086, "pypath.utils.orthology.EnsemblOrtholog.hc"]], "id (pypath.utils.orthology.ensemblortholog attribute)": [[1086, "pypath.utils.orthology.EnsemblOrtholog.id"]], "index() (pypath.utils.orthology.ensemblortholog method)": [[1086, "pypath.utils.orthology.EnsemblOrtholog.index"]], "types (pypath.utils.orthology.ensemblortholog attribute)": [[1086, "pypath.utils.orthology.EnsemblOrtholog.types"]], "ensemblorthology (class in pypath.utils.orthology)": [[1087, "pypath.utils.orthology.EnsemblOrthology"]], "__init__() (pypath.utils.orthology.ensemblorthology method)": [[1087, "pypath.utils.orthology.EnsemblOrthology.__init__"]], "asdict() (pypath.utils.orthology.ensemblorthology method)": [[1087, "pypath.utils.orthology.EnsemblOrthology.asdict"]], "df() (pypath.utils.orthology.ensemblorthology method)": [[1087, "pypath.utils.orthology.EnsemblOrthology.df"]], "match() (pypath.utils.orthology.ensemblorthology method)": [[1087, "pypath.utils.orthology.EnsemblOrthology.match"]], "translate() (pypath.utils.orthology.ensemblorthology method)": [[1087, "pypath.utils.orthology.EnsemblOrthology.translate"]], "translate_df() (pypath.utils.orthology.ensemblorthology method)": [[1087, "pypath.utils.orthology.EnsemblOrthology.translate_df"]], "homologeneortholog (class in pypath.utils.orthology)": [[1088, "pypath.utils.orthology.HomologeneOrtholog"]], "__init__() (pypath.utils.orthology.homologeneortholog method)": [[1088, "pypath.utils.orthology.HomologeneOrtholog.__init__"]], "count() (pypath.utils.orthology.homologeneortholog method)": [[1088, "pypath.utils.orthology.HomologeneOrtholog.count"]], "id (pypath.utils.orthology.homologeneortholog attribute)": [[1088, "pypath.utils.orthology.HomologeneOrtholog.id"]], "index() (pypath.utils.orthology.homologeneortholog method)": [[1088, "pypath.utils.orthology.HomologeneOrtholog.index"]], "homologeneorthology (class in pypath.utils.orthology)": [[1089, "pypath.utils.orthology.HomologeneOrthology"]], "__init__() (pypath.utils.orthology.homologeneorthology method)": [[1089, "pypath.utils.orthology.HomologeneOrthology.__init__"]], "asdict() (pypath.utils.orthology.homologeneorthology method)": [[1089, "pypath.utils.orthology.HomologeneOrthology.asdict"]], "df() (pypath.utils.orthology.homologeneorthology method)": [[1089, "pypath.utils.orthology.HomologeneOrthology.df"]], "load() (pypath.utils.orthology.homologeneorthology method)": [[1089, "pypath.utils.orthology.HomologeneOrthology.load"]], "translate() (pypath.utils.orthology.homologeneorthology method)": [[1089, "pypath.utils.orthology.HomologeneOrthology.translate"]], "translate_df() (pypath.utils.orthology.homologeneorthology method)": [[1089, "pypath.utils.orthology.HomologeneOrthology.translate_df"]], "omaortholog (class in pypath.utils.orthology)": [[1090, "pypath.utils.orthology.OmaOrtholog"]], "__init__() (pypath.utils.orthology.omaortholog method)": [[1090, "pypath.utils.orthology.OmaOrtholog.__init__"]], "count() (pypath.utils.orthology.omaortholog method)": [[1090, "pypath.utils.orthology.OmaOrtholog.count"]], "id (pypath.utils.orthology.omaortholog attribute)": [[1090, "pypath.utils.orthology.OmaOrtholog.id"]], "index() (pypath.utils.orthology.omaortholog method)": [[1090, "pypath.utils.orthology.OmaOrtholog.index"]], "rel_type (pypath.utils.orthology.omaortholog attribute)": [[1090, "pypath.utils.orthology.OmaOrtholog.rel_type"]], "score (pypath.utils.orthology.omaortholog attribute)": [[1090, "pypath.utils.orthology.OmaOrtholog.score"]], "omaorthology (class in pypath.utils.orthology)": [[1091, "pypath.utils.orthology.OmaOrthology"]], "__init__() (pypath.utils.orthology.omaorthology method)": [[1091, "pypath.utils.orthology.OmaOrthology.__init__"]], "asdict() (pypath.utils.orthology.omaorthology method)": [[1091, "pypath.utils.orthology.OmaOrthology.asdict"]], "df() (pypath.utils.orthology.omaorthology method)": [[1091, "pypath.utils.orthology.OmaOrthology.df"]], "match() (pypath.utils.orthology.omaorthology method)": [[1091, "pypath.utils.orthology.OmaOrthology.match"]], "translate() (pypath.utils.orthology.omaorthology method)": [[1091, "pypath.utils.orthology.OmaOrthology.translate"]], "translate_df() (pypath.utils.orthology.omaorthology method)": [[1091, "pypath.utils.orthology.OmaOrthology.translate_df"]], "orthologbase (class in pypath.utils.orthology)": [[1092, "pypath.utils.orthology.OrthologBase"]], "__init__() (pypath.utils.orthology.orthologbase method)": [[1092, "pypath.utils.orthology.OrthologBase.__init__"]], "orthologmeta (class in pypath.utils.orthology)": [[1093, "pypath.utils.orthology.OrthologMeta"]], "__init__() (pypath.utils.orthology.orthologmeta method)": [[1093, "pypath.utils.orthology.OrthologMeta.__init__"]], "mro() (pypath.utils.orthology.orthologmeta method)": [[1093, "pypath.utils.orthology.OrthologMeta.mro"]], "register() (pypath.utils.orthology.orthologmeta method)": [[1093, "pypath.utils.orthology.OrthologMeta.register"]], "orthologymanager (class in pypath.utils.orthology)": [[1094, "pypath.utils.orthology.OrthologyManager"]], "__init__() (pypath.utils.orthology.orthologymanager method)": [[1094, "pypath.utils.orthology.OrthologyManager.__init__"]], "get_df() (pypath.utils.orthology.orthologymanager method)": [[1094, "pypath.utils.orthology.OrthologyManager.get_df"]], "get_dict() (pypath.utils.orthology.orthologymanager method)": [[1094, "pypath.utils.orthology.OrthologyManager.get_dict"]], "translate() (pypath.utils.orthology.orthologymanager method)": [[1094, "pypath.utils.orthology.OrthologyManager.translate"]], "translate_df() (pypath.utils.orthology.orthologymanager method)": [[1094, "pypath.utils.orthology.OrthologyManager.translate_df"]], "orthologytablekey (class in pypath.utils.orthology)": [[1095, "pypath.utils.orthology.OrthologyTableKey"]], "__init__() (pypath.utils.orthology.orthologytablekey method)": [[1095, "pypath.utils.orthology.OrthologyTableKey.__init__"]], "count() (pypath.utils.orthology.orthologytablekey method)": [[1095, "pypath.utils.orthology.OrthologyTableKey.count"]], "id_type (pypath.utils.orthology.orthologytablekey attribute)": [[1095, "pypath.utils.orthology.OrthologyTableKey.id_type"]], "index() (pypath.utils.orthology.orthologytablekey method)": [[1095, "pypath.utils.orthology.OrthologyTableKey.index"]], "only_swissprot (pypath.utils.orthology.orthologytablekey attribute)": [[1095, "pypath.utils.orthology.OrthologyTableKey.only_swissprot"]], "resource (pypath.utils.orthology.orthologytablekey attribute)": [[1095, "pypath.utils.orthology.OrthologyTableKey.resource"]], "source (pypath.utils.orthology.orthologytablekey attribute)": [[1095, "pypath.utils.orthology.OrthologyTableKey.source"]], "target (pypath.utils.orthology.orthologytablekey attribute)": [[1095, "pypath.utils.orthology.OrthologyTableKey.target"]], "proteinorthology (class in pypath.utils.orthology)": [[1096, "pypath.utils.orthology.ProteinOrthology"]], "__init__() (pypath.utils.orthology.proteinorthology method)": [[1096, "pypath.utils.orthology.ProteinOrthology.__init__"]], "asdict() (pypath.utils.orthology.proteinorthology method)": [[1096, "pypath.utils.orthology.ProteinOrthology.asdict"]], "df() (pypath.utils.orthology.proteinorthology method)": [[1096, "pypath.utils.orthology.ProteinOrthology.df"]], "translate() (pypath.utils.orthology.proteinorthology method)": [[1096, "pypath.utils.orthology.ProteinOrthology.translate"]], "translate_df() (pypath.utils.orthology.proteinorthology method)": [[1096, "pypath.utils.orthology.ProteinOrthology.translate_df"]], "proteomes (class in pypath.utils.orthology)": [[1097, "pypath.utils.orthology.Proteomes"]], "__init__() (pypath.utils.orthology.proteomes method)": [[1097, "pypath.utils.orthology.Proteomes.__init__"]], "ptmorthology (class in pypath.utils.orthology)": [[1098, "pypath.utils.orthology.PtmOrthology"]], "__init__() (pypath.utils.orthology.ptmorthology method)": [[1098, "pypath.utils.orthology.PtmOrthology.__init__"]], "ptm_orthology() (pypath.utils.orthology.ptmorthology method)": [[1098, "pypath.utils.orthology.PtmOrthology.ptm_orthology"]], "translate() (pypath.utils.orthology.ptmorthology method)": [[1098, "pypath.utils.orthology.PtmOrthology.translate"]], "translate_site() (pypath.utils.orthology.ptmorthology method)": [[1098, "pypath.utils.orthology.PtmOrthology.translate_site"]], "sequencecontainer (class in pypath.utils.orthology)": [[1099, "pypath.utils.orthology.SequenceContainer"]], "__init__() (pypath.utils.orthology.sequencecontainer method)": [[1099, "pypath.utils.orthology.SequenceContainer.__init__"]], "get_df() (in module pypath.utils.orthology)": [[1100, "pypath.utils.orthology.get_df"]], "get_dict() (in module pypath.utils.orthology)": [[1101, "pypath.utils.orthology.get_dict"]], "get_manager() (in module pypath.utils.orthology)": [[1102, "pypath.utils.orthology.get_manager"]], "init() (in module pypath.utils.orthology)": [[1103, "pypath.utils.orthology.init"]], "translate() (in module pypath.utils.orthology)": [[1104, "pypath.utils.orthology.translate"]], "translate_df() (in module pypath.utils.orthology)": [[1105, "pypath.utils.orthology.translate_df"]], "pypath.utils.pdb": [[1106, "module-pypath.utils.pdb"]], "residue (class in pypath.utils.pdb)": [[1107, "pypath.utils.pdb.Residue"]], "__init__() (pypath.utils.pdb.residue method)": [[1107, "pypath.utils.pdb.Residue.__init__"]], "chain (pypath.utils.pdb.residue attribute)": [[1107, "pypath.utils.pdb.Residue.chain"]], "count() (pypath.utils.pdb.residue method)": [[1107, "pypath.utils.pdb.Residue.count"]], "index() (pypath.utils.pdb.residue method)": [[1107, "pypath.utils.pdb.Residue.index"]], "offset (pypath.utils.pdb.residue attribute)": [[1107, "pypath.utils.pdb.Residue.offset"]], "resnum (pypath.utils.pdb.residue attribute)": [[1107, "pypath.utils.pdb.Residue.resnum"]], "uniprot (pypath.utils.pdb.residue attribute)": [[1107, "pypath.utils.pdb.Residue.uniprot"]], "residuemapper (class in pypath.utils.pdb)": [[1108, "pypath.utils.pdb.ResidueMapper"]], "__init__() (pypath.utils.pdb.residuemapper method)": [[1108, "pypath.utils.pdb.ResidueMapper.__init__"]], "clean() (pypath.utils.pdb.residuemapper method)": [[1108, "pypath.utils.pdb.ResidueMapper.clean"]], "get_residue() (pypath.utils.pdb.residuemapper method)": [[1108, "pypath.utils.pdb.ResidueMapper.get_residue"]], "load_mapping() (pypath.utils.pdb.residuemapper method)": [[1108, "pypath.utils.pdb.ResidueMapper.load_mapping"]], "segment (class in pypath.utils.pdb)": [[1109, "pypath.utils.pdb.Segment"]], "__init__() (pypath.utils.pdb.segment method)": [[1109, "pypath.utils.pdb.Segment.__init__"]], "count() (pypath.utils.pdb.segment method)": [[1109, "pypath.utils.pdb.Segment.count"]], "index() (pypath.utils.pdb.segment method)": [[1109, "pypath.utils.pdb.Segment.index"]], "pdb_end (pypath.utils.pdb.segment attribute)": [[1109, "pypath.utils.pdb.Segment.pdb_end"]], "pdb_start (pypath.utils.pdb.segment attribute)": [[1109, "pypath.utils.pdb.Segment.pdb_start"]], "uniprot (pypath.utils.pdb.segment attribute)": [[1109, "pypath.utils.pdb.Segment.uniprot"]], "uniprot_end (pypath.utils.pdb.segment attribute)": [[1109, "pypath.utils.pdb.Segment.uniprot_end"]], "uniprot_start (pypath.utils.pdb.segment attribute)": [[1109, "pypath.utils.pdb.Segment.uniprot_start"]], "residue_pdb() (in module pypath.utils.pdb)": [[1110, "pypath.utils.pdb.residue_pdb"]], "pypath.utils.proteomicsdb": [[1111, "module-pypath.utils.proteomicsdb"]], "proteomicsdb (class in pypath.utils.proteomicsdb)": [[1112, "pypath.utils.proteomicsdb.ProteomicsDB"]], "__init__() (pypath.utils.proteomicsdb.proteomicsdb method)": [[1112, "pypath.utils.proteomicsdb.ProteomicsDB.__init__"]], "get_expression() (pypath.utils.proteomicsdb.proteomicsdb method)": [[1112, "pypath.utils.proteomicsdb.ProteomicsDB.get_expression"]], "get_pieces() (pypath.utils.proteomicsdb.proteomicsdb method)": [[1112, "pypath.utils.proteomicsdb.ProteomicsDB.get_pieces"]], "get_proteins() (pypath.utils.proteomicsdb.proteomicsdb method)": [[1112, "pypath.utils.proteomicsdb.ProteomicsDB.get_proteins"]], "get_tissues() (pypath.utils.proteomicsdb.proteomicsdb method)": [[1112, "pypath.utils.proteomicsdb.ProteomicsDB.get_tissues"]], "pandas_matrix() (pypath.utils.proteomicsdb.proteomicsdb method)": [[1112, "pypath.utils.proteomicsdb.ProteomicsDB.pandas_matrix"]], "query() (pypath.utils.proteomicsdb.proteomicsdb method)": [[1112, "pypath.utils.proteomicsdb.ProteomicsDB.query"]], "tissues_x_proteins() (pypath.utils.proteomicsdb.proteomicsdb method)": [[1112, "pypath.utils.proteomicsdb.ProteomicsDB.tissues_x_proteins"]], "pypath.utils.pyreact": [[1113, "module-pypath.utils.pyreact"]], "attributehandler (class in pypath.utils.pyreact)": [[1114, "pypath.utils.pyreact.AttributeHandler"]], "__init__() (pypath.utils.pyreact.attributehandler method)": [[1114, "pypath.utils.pyreact.AttributeHandler.__init__"]], "biopaxreader (class in pypath.utils.pyreact)": [[1115, "pypath.utils.pyreact.BioPaxReader"]], "__init__() (pypath.utils.pyreact.biopaxreader method)": [[1115, "pypath.utils.pyreact.BioPaxReader.__init__"]], "biopax_size() (pypath.utils.pyreact.biopaxreader method)": [[1115, "pypath.utils.pyreact.BioPaxReader.biopax_size"]], "cleanup_hook() (pypath.utils.pyreact.biopaxreader method)": [[1115, "pypath.utils.pyreact.BioPaxReader.cleanup_hook"]], "close_biopax() (pypath.utils.pyreact.biopaxreader method)": [[1115, "pypath.utils.pyreact.BioPaxReader.close_biopax"]], "extract() (pypath.utils.pyreact.biopaxreader method)": [[1115, "pypath.utils.pyreact.BioPaxReader.extract"]], "init_etree() (pypath.utils.pyreact.biopaxreader method)": [[1115, "pypath.utils.pyreact.BioPaxReader.init_etree"]], "iterate() (pypath.utils.pyreact.biopaxreader method)": [[1115, "pypath.utils.pyreact.BioPaxReader.iterate"]], "open_biopax() (pypath.utils.pyreact.biopaxreader method)": [[1115, "pypath.utils.pyreact.BioPaxReader.open_biopax"]], "process() (pypath.utils.pyreact.biopaxreader method)": [[1115, "pypath.utils.pyreact.BioPaxReader.process"]], "set_progress() (pypath.utils.pyreact.biopaxreader method)": [[1115, "pypath.utils.pyreact.BioPaxReader.set_progress"]], "complex (class in pypath.utils.pyreact)": [[1116, "pypath.utils.pyreact.Complex"]], "__init__() (pypath.utils.pyreact.complex method)": [[1116, "pypath.utils.pyreact.Complex.__init__"]], "complexvariations (class in pypath.utils.pyreact)": [[1117, "pypath.utils.pyreact.ComplexVariations"]], "__init__() (pypath.utils.pyreact.complexvariations method)": [[1117, "pypath.utils.pyreact.ComplexVariations.__init__"]], "itermembers() (pypath.utils.pyreact.complexvariations method)": [[1117, "pypath.utils.pyreact.ComplexVariations.itermembers"]], "control (class in pypath.utils.pyreact)": [[1118, "pypath.utils.pyreact.Control"]], "__init__() (pypath.utils.pyreact.control method)": [[1118, "pypath.utils.pyreact.Control.__init__"]], "entity (class in pypath.utils.pyreact)": [[1119, "pypath.utils.pyreact.Entity"]], "__init__() (pypath.utils.pyreact.entity method)": [[1119, "pypath.utils.pyreact.Entity.__init__"]], "expand() (pypath.utils.pyreact.entity method)": [[1119, "pypath.utils.pyreact.Entity.expand"]], "entityset (class in pypath.utils.pyreact)": [[1120, "pypath.utils.pyreact.EntitySet"]], "__init__() (pypath.utils.pyreact.entityset method)": [[1120, "pypath.utils.pyreact.EntitySet.__init__"]], "intersecting (class in pypath.utils.pyreact)": [[1121, "pypath.utils.pyreact.Intersecting"]], "__init__() (pypath.utils.pyreact.intersecting method)": [[1121, "pypath.utils.pyreact.Intersecting.__init__"]], "protein (class in pypath.utils.pyreact)": [[1122, "pypath.utils.pyreact.Protein"]], "__init__() (pypath.utils.pyreact.protein method)": [[1122, "pypath.utils.pyreact.Protein.__init__"]], "expand() (pypath.utils.pyreact.protein method)": [[1122, "pypath.utils.pyreact.Protein.expand"]], "proteinfamily (class in pypath.utils.pyreact)": [[1123, "pypath.utils.pyreact.ProteinFamily"]], "__init__() (pypath.utils.pyreact.proteinfamily method)": [[1123, "pypath.utils.pyreact.ProteinFamily.__init__"]], "pyreact (class in pypath.utils.pyreact)": [[1124, "pypath.utils.pyreact.PyReact"]], "__init__() (pypath.utils.pyreact.pyreact method)": [[1124, "pypath.utils.pyreact.PyReact.__init__"]], "gen_cvariations() (pypath.utils.pyreact.pyreact method)": [[1124, "pypath.utils.pyreact.PyReact.gen_cvariations"]], "in_same_component() (pypath.utils.pyreact.pyreact method)": [[1124, "pypath.utils.pyreact.PyReact.in_same_component"]], "merge_complexes() (pypath.utils.pyreact.pyreact method)": [[1124, "pypath.utils.pyreact.PyReact.merge_complexes"]], "merge_cvariations() (pypath.utils.pyreact.pyreact method)": [[1124, "pypath.utils.pyreact.PyReact.merge_cvariations"]], "reaction (class in pypath.utils.pyreact)": [[1125, "pypath.utils.pyreact.Reaction"]], "__init__() (pypath.utils.pyreact.reaction method)": [[1125, "pypath.utils.pyreact.Reaction.__init__"]], "reactionside (class in pypath.utils.pyreact)": [[1126, "pypath.utils.pyreact.ReactionSide"]], "__init__() (pypath.utils.pyreact.reactionside method)": [[1126, "pypath.utils.pyreact.ReactionSide.__init__"]], "expand() (pypath.utils.pyreact.reactionside method)": [[1126, "pypath.utils.pyreact.ReactionSide.expand"]], "reference (class in pypath.utils.pyreact)": [[1127, "pypath.utils.pyreact.Reference"]], "__init__() (pypath.utils.pyreact.reference method)": [[1127, "pypath.utils.pyreact.Reference.__init__"]], "expand() (pypath.utils.pyreact.reference method)": [[1127, "pypath.utils.pyreact.Reference.expand"]], "pypath.utils.reflists": [[1128, "module-pypath.utils.reflists"]], "referencelistmanager (class in pypath.utils.reflists)": [[1129, "pypath.utils.reflists.ReferenceListManager"]], "__init__() (pypath.utils.reflists.referencelistmanager method)": [[1129, "pypath.utils.reflists.ReferenceListManager.__init__"]], "check() (pypath.utils.reflists.referencelistmanager method)": [[1129, "pypath.utils.reflists.ReferenceListManager.check"]], "is_not() (pypath.utils.reflists.referencelistmanager method)": [[1129, "pypath.utils.reflists.ReferenceListManager.is_not"]], "select() (pypath.utils.reflists.referencelistmanager method)": [[1129, "pypath.utils.reflists.ReferenceListManager.select"]], "check() (in module pypath.utils.reflists)": [[1130, "pypath.utils.reflists.check"]], "get_manager() (in module pypath.utils.reflists)": [[1131, "pypath.utils.reflists.get_manager"]], "get_reflist() (in module pypath.utils.reflists)": [[1132, "pypath.utils.reflists.get_reflist"]], "init() (in module pypath.utils.reflists)": [[1133, "pypath.utils.reflists.init"]], "is_not() (in module pypath.utils.reflists)": [[1134, "pypath.utils.reflists.is_not"]], "select() (in module pypath.utils.reflists)": [[1135, "pypath.utils.reflists.select"]], "pypath.utils.residues": [[1136, "module-pypath.utils.residues"]], "residuemapper (class in pypath.utils.residues)": [[1137, "pypath.utils.residues.ResidueMapper"]], "__init__() (pypath.utils.residues.residuemapper method)": [[1137, "pypath.utils.residues.ResidueMapper.__init__"]], "clean() (pypath.utils.residues.residuemapper method)": [[1137, "pypath.utils.residues.ResidueMapper.clean"]], "pypath.utils.seq": [[1138, "module-pypath.utils.seq"]], "pfam (class in pypath.utils.seq)": [[1139, "pypath.utils.seq.Pfam"]], "__init__() (pypath.utils.seq.pfam method)": [[1139, "pypath.utils.seq.Pfam.__init__"]], "iterdb() (pypath.utils.seq.pfam method)": [[1139, "pypath.utils.seq.Pfam.iterdb"]], "iterprotein() (pypath.utils.seq.pfam method)": [[1139, "pypath.utils.seq.Pfam.iterprotein"]], "load() (pypath.utils.seq.pfam method)": [[1139, "pypath.utils.seq.Pfam.load"]], "processor() (pypath.utils.seq.pfam method)": [[1139, "pypath.utils.seq.Pfam.processor"]], "unload() (pypath.utils.seq.pfam method)": [[1139, "pypath.utils.seq.Pfam.unload"]], "resource (class in pypath.utils.seq)": [[1140, "pypath.utils.seq.Resource"]], "__init__() (pypath.utils.seq.resource method)": [[1140, "pypath.utils.seq.Resource.__init__"]], "iterdb() (pypath.utils.seq.resource method)": [[1140, "pypath.utils.seq.Resource.iterdb"]], "iterprotein() (pypath.utils.seq.resource method)": [[1140, "pypath.utils.seq.Resource.iterprotein"]], "load() (pypath.utils.seq.resource method)": [[1140, "pypath.utils.seq.Resource.load"]], "processor() (pypath.utils.seq.resource method)": [[1140, "pypath.utils.seq.Resource.processor"]], "unload() (pypath.utils.seq.resource method)": [[1140, "pypath.utils.seq.Resource.unload"]], "seq (class in pypath.utils.seq)": [[1141, "pypath.utils.seq.Seq"]], "__init__() (pypath.utils.seq.seq method)": [[1141, "pypath.utils.seq.Seq.__init__"]], "findall() (pypath.utils.seq.seq method)": [[1141, "pypath.utils.seq.Seq.findall"]], "get_isoforms() (in module pypath.utils.seq)": [[1142, "pypath.utils.seq.get_isoforms"]], "read_fasta() (in module pypath.utils.seq)": [[1143, "pypath.utils.seq.read_fasta"]], "swissprot_seq() (in module pypath.utils.seq)": [[1144, "pypath.utils.seq.swissprot_seq"]], "pypath.utils.taxonomy": [[1145, "module-pypath.utils.taxonomy"]], "ensure_common_name() (in module pypath.utils.taxonomy)": [[1146, "pypath.utils.taxonomy.ensure_common_name"]], "ensure_ensembl_name() (in module pypath.utils.taxonomy)": [[1147, "pypath.utils.taxonomy.ensure_ensembl_name"]], "ensure_latin_name() (in module pypath.utils.taxonomy)": [[1148, "pypath.utils.taxonomy.ensure_latin_name"]], "ensure_ncbi_tax_id() (in module pypath.utils.taxonomy)": [[1149, "pypath.utils.taxonomy.ensure_ncbi_tax_id"]], "get_db() (in module pypath.utils.taxonomy)": [[1150, "pypath.utils.taxonomy.get_db"]], "init_db() (in module pypath.utils.taxonomy)": [[1151, "pypath.utils.taxonomy.init_db"]], "short_latin_names() (in module pypath.utils.taxonomy)": [[1152, "pypath.utils.taxonomy.short_latin_names"]], "shorten_latin_name() (in module pypath.utils.taxonomy)": [[1153, "pypath.utils.taxonomy.shorten_latin_name"]], "taxid_from_common_name() (in module pypath.utils.taxonomy)": [[1154, "pypath.utils.taxonomy.taxid_from_common_name"]], "taxid_from_dbptm_taxon_name() (in module pypath.utils.taxonomy)": [[1155, "pypath.utils.taxonomy.taxid_from_dbptm_taxon_name"]], "taxid_from_ensembl_name() (in module pypath.utils.taxonomy)": [[1156, "pypath.utils.taxonomy.taxid_from_ensembl_name"]], "taxid_from_latin_name() (in module pypath.utils.taxonomy)": [[1157, "pypath.utils.taxonomy.taxid_from_latin_name"]], "taxid_from_nonstandard() (in module pypath.utils.taxonomy)": [[1158, "pypath.utils.taxonomy.taxid_from_nonstandard"]], "uniprot_taxid() (in module pypath.utils.taxonomy)": [[1159, "pypath.utils.taxonomy.uniprot_taxid"]], "pypath.utils.unichem": [[1160, "module-pypath.utils.unichem"]], "unichem (class in pypath.utils.unichem)": [[1161, "pypath.utils.unichem.Unichem"]], "__init__() (pypath.utils.unichem.unichem method)": [[1161, "pypath.utils.unichem.Unichem.__init__"]], "connectivity_search() (pypath.utils.unichem.unichem method)": [[1161, "pypath.utils.unichem.Unichem.connectivity_search"]], "inchikey2anything() (pypath.utils.unichem.unichem method)": [[1161, "pypath.utils.unichem.Unichem.inchikey2anything"]], "info() (pypath.utils.unichem.unichem static method)": [[1161, "pypath.utils.unichem.Unichem.info"]], "smiles2chembl() (pypath.utils.unichem.unichem method)": [[1161, "pypath.utils.unichem.Unichem.smiles2chembl"]], "translate() (pypath.utils.unichem.unichem method)": [[1161, "pypath.utils.unichem.Unichem.translate"]], "usage() (pypath.utils.unichem.unichem method)": [[1161, "pypath.utils.unichem.Unichem.usage"]], "pypath.utils.uniprot": [[1162, "module-pypath.utils.uniprot"]], "uniprotprotein (class in pypath.utils.uniprot)": [[1163, "pypath.utils.uniprot.UniprotProtein"]], "__init__() (pypath.utils.uniprot.uniprotprotein method)": [[1163, "pypath.utils.uniprot.UniprotProtein.__init__"]], "databases (pypath.utils.uniprot.uniprotprotein property)": [[1163, "pypath.utils.uniprot.UniprotProtein.databases"]], "info_section() (pypath.utils.uniprot.uniprotprotein method)": [[1163, "pypath.utils.uniprot.UniprotProtein.info_section"]], "keywords (pypath.utils.uniprot.uniprotprotein property)": [[1163, "pypath.utils.uniprot.UniprotProtein.keywords"]], "keywords_with_xrefs (pypath.utils.uniprot.uniprotprotein property)": [[1163, "pypath.utils.uniprot.UniprotProtein.keywords_with_xrefs"]], "length (pypath.utils.uniprot.uniprotprotein property)": [[1163, "pypath.utils.uniprot.UniprotProtein.length"]], "lengths (pypath.utils.uniprot.uniprotprotein property)": [[1163, "pypath.utils.uniprot.UniprotProtein.lengths"]], "sequence (pypath.utils.uniprot.uniprotprotein property)": [[1163, "pypath.utils.uniprot.UniprotProtein.sequence"]], "weight (pypath.utils.uniprot.uniprotprotein property)": [[1163, "pypath.utils.uniprot.UniprotProtein.weight"]], "weights (pypath.utils.uniprot.uniprotprotein property)": [[1163, "pypath.utils.uniprot.UniprotProtein.weights"]], "ac() (in module pypath.utils.uniprot)": [[1164, "pypath.utils.uniprot.ac"]], "activity_regulation() (in module pypath.utils.uniprot)": [[1165, "pypath.utils.uniprot.activity_regulation"]], "activity_regulation_with_xrefs() (in module pypath.utils.uniprot)": [[1166, "pypath.utils.uniprot.activity_regulation_with_xrefs"]], "alternative_products() (in module pypath.utils.uniprot)": [[1167, "pypath.utils.uniprot.alternative_products"]], "alternative_products_with_xrefs() (in module pypath.utils.uniprot)": [[1168, "pypath.utils.uniprot.alternative_products_with_xrefs"]], "browse() (in module pypath.utils.uniprot)": [[1169, "pypath.utils.uniprot.browse"]], "catalytic_activity() (in module pypath.utils.uniprot)": [[1170, "pypath.utils.uniprot.catalytic_activity"]], "catalytic_activity_with_xrefs() (in module pypath.utils.uniprot)": [[1171, "pypath.utils.uniprot.catalytic_activity_with_xrefs"]], "collect() (in module pypath.utils.uniprot)": [[1172, "pypath.utils.uniprot.collect"]], "databases() (in module pypath.utils.uniprot)": [[1173, "pypath.utils.uniprot.databases"]], "disease() (in module pypath.utils.uniprot)": [[1174, "pypath.utils.uniprot.disease"]], "disease_with_xrefs() (in module pypath.utils.uniprot)": [[1175, "pypath.utils.uniprot.disease_with_xrefs"]], "ec() (in module pypath.utils.uniprot)": [[1176, "pypath.utils.uniprot.ec"]], "features_table() (in module pypath.utils.uniprot)": [[1177, "pypath.utils.uniprot.features_table"]], "full_name() (in module pypath.utils.uniprot)": [[1178, "pypath.utils.uniprot.full_name"]], "function() (in module pypath.utils.uniprot)": [[1179, "pypath.utils.uniprot.function"]], "function_genecards() (in module pypath.utils.uniprot)": [[1180, "pypath.utils.uniprot.function_genecards"]], "function_or_genecards() (in module pypath.utils.uniprot)": [[1181, "pypath.utils.uniprot.function_or_genecards"]], "function_with_genecards() (in module pypath.utils.uniprot)": [[1182, "pypath.utils.uniprot.function_with_genecards"]], "function_with_xrefs() (in module pypath.utils.uniprot)": [[1183, "pypath.utils.uniprot.function_with_xrefs"]], "genesymbol() (in module pypath.utils.uniprot)": [[1184, "pypath.utils.uniprot.genesymbol"]], "has_tag() (in module pypath.utils.uniprot)": [[1185, "pypath.utils.uniprot.has_tag"]], "id() (in module pypath.utils.uniprot)": [[1186, "pypath.utils.uniprot.id"]], "info() (in module pypath.utils.uniprot)": [[1187, "pypath.utils.uniprot.info"]], "info_section() (in module pypath.utils.uniprot)": [[1188, "pypath.utils.uniprot.info_section"]], "interaction() (in module pypath.utils.uniprot)": [[1189, "pypath.utils.uniprot.interaction"]], "interaction_with_xrefs() (in module pypath.utils.uniprot)": [[1190, "pypath.utils.uniprot.interaction_with_xrefs"]], "is_reviewed() (in module pypath.utils.uniprot)": [[1191, "pypath.utils.uniprot.is_reviewed"]], "itertag() (in module pypath.utils.uniprot)": [[1192, "pypath.utils.uniprot.itertag"]], "keywords() (in module pypath.utils.uniprot)": [[1193, "pypath.utils.uniprot.keywords"]], "keywords_with_xrefs() (in module pypath.utils.uniprot)": [[1194, "pypath.utils.uniprot.keywords_with_xrefs"]], "length() (in module pypath.utils.uniprot)": [[1195, "pypath.utils.uniprot.length"]], "lengths() (in module pypath.utils.uniprot)": [[1196, "pypath.utils.uniprot.lengths"]], "load() (in module pypath.utils.uniprot)": [[1197, "pypath.utils.uniprot.load"]], "organism() (in module pypath.utils.uniprot)": [[1198, "pypath.utils.uniprot.organism"]], "print_features() (in module pypath.utils.uniprot)": [[1199, "pypath.utils.uniprot.print_features"]], "ptm() (in module pypath.utils.uniprot)": [[1200, "pypath.utils.uniprot.ptm"]], "ptm_with_xrefs() (in module pypath.utils.uniprot)": [[1201, "pypath.utils.uniprot.ptm_with_xrefs"]], "query() (in module pypath.utils.uniprot)": [[1202, "pypath.utils.uniprot.query"]], "reload() (in module pypath.utils.uniprot)": [[1203, "pypath.utils.uniprot.reload"]], "remove_xrefs() (in module pypath.utils.uniprot)": [[1204, "pypath.utils.uniprot.remove_xrefs"]], "sequence() (in module pypath.utils.uniprot)": [[1205, "pypath.utils.uniprot.sequence"]], "sequence_caution() (in module pypath.utils.uniprot)": [[1206, "pypath.utils.uniprot.sequence_caution"]], "sequence_caution_with_xrefs() (in module pypath.utils.uniprot)": [[1207, "pypath.utils.uniprot.sequence_caution_with_xrefs"]], "similarity() (in module pypath.utils.uniprot)": [[1208, "pypath.utils.uniprot.similarity"]], "similarity_with_xrefs() (in module pypath.utils.uniprot)": [[1209, "pypath.utils.uniprot.similarity_with_xrefs"]], "subcellular_location() (in module pypath.utils.uniprot)": [[1210, "pypath.utils.uniprot.subcellular_location"]], "subcellular_location_with_xrefs() (in module pypath.utils.uniprot)": [[1211, "pypath.utils.uniprot.subcellular_location_with_xrefs"]], "subunit() (in module pypath.utils.uniprot)": [[1212, "pypath.utils.uniprot.subunit"]], "subunit_with_xrefs() (in module pypath.utils.uniprot)": [[1213, "pypath.utils.uniprot.subunit_with_xrefs"]], "tissue_specificity() (in module pypath.utils.uniprot)": [[1214, "pypath.utils.uniprot.tissue_specificity"]], "tissue_specificity_with_xrefs() (in module pypath.utils.uniprot)": [[1215, "pypath.utils.uniprot.tissue_specificity_with_xrefs"]], "update_databases() (in module pypath.utils.uniprot)": [[1216, "pypath.utils.uniprot.update_databases"]], "update_info() (in module pypath.utils.uniprot)": [[1217, "pypath.utils.uniprot.update_info"]], "web_resource() (in module pypath.utils.uniprot)": [[1218, "pypath.utils.uniprot.web_resource"]], "web_resource_with_xrefs() (in module pypath.utils.uniprot)": [[1219, "pypath.utils.uniprot.web_resource_with_xrefs"]], "weight() (in module pypath.utils.uniprot)": [[1220, "pypath.utils.uniprot.weight"]], "weights() (in module pypath.utils.uniprot)": [[1221, "pypath.utils.uniprot.weights"]], "pypath.visual": [[1222, "module-pypath.visual"]], "pypath.visual.drawing": [[1223, "module-pypath.visual.drawing"]], "interset (class in pypath.visual.drawing)": [[1224, "pypath.visual.drawing.InterSet"]], "__init__() (pypath.visual.drawing.interset method)": [[1224, "pypath.visual.drawing.InterSet.__init__"]], "draw() (pypath.visual.drawing.interset method)": [[1224, "pypath.visual.drawing.InterSet.draw"]], "plot (class in pypath.visual.drawing)": [[1225, "pypath.visual.drawing.Plot"]], "__init__() (pypath.visual.drawing.plot method)": [[1225, "pypath.visual.drawing.Plot.__init__"]], "pypath.visual.igraph_drawing": [[1226, "module-pypath.visual.igraph_drawing"]], "abstractcairographdrawer (class in pypath.visual.igraph_drawing)": [[1227, "pypath.visual.igraph_drawing.AbstractCairoGraphDrawer"]], "__init__() (pypath.visual.igraph_drawing.abstractcairographdrawer method)": [[1227, "pypath.visual.igraph_drawing.AbstractCairoGraphDrawer.__init__"]], "arrowedgedrawer (in module pypath.visual.igraph_drawing)": [[1228, "pypath.visual.igraph_drawing.ArrowEdgeDrawer"]], "defaultgraphdrawerffsupport (class in pypath.visual.igraph_drawing)": [[1229, "pypath.visual.igraph_drawing.DefaultGraphDrawerFFsupport"]], "__init__() (pypath.visual.igraph_drawing.defaultgraphdrawerffsupport method)": [[1229, "pypath.visual.igraph_drawing.DefaultGraphDrawerFFsupport.__init__"]], "defaultvertexdrawer (in module pypath.visual.igraph_drawing)": [[1230, "pypath.visual.igraph_drawing.DefaultVertexDrawer"]], "textdrawer (in module pypath.visual.igraph_drawing)": [[1231, "pypath.visual.igraph_drawing.TextDrawer"]], "pypath.visual.igraph_drawing.edge": [[1232, "module-pypath.visual.igraph_drawing.edge"]], "abstractedgedrawer (class in pypath.visual.igraph_drawing.edge)": [[1233, "pypath.visual.igraph_drawing.edge.AbstractEdgeDrawer"]], "__init__() (pypath.visual.igraph_drawing.edge.abstractedgedrawer method)": [[1233, "pypath.visual.igraph_drawing.edge.AbstractEdgeDrawer.__init__"]], "draw_directed_edge() (pypath.visual.igraph_drawing.edge.abstractedgedrawer method)": [[1233, "pypath.visual.igraph_drawing.edge.AbstractEdgeDrawer.draw_directed_edge"]], "draw_loop_edge() (pypath.visual.igraph_drawing.edge.abstractedgedrawer method)": [[1233, "pypath.visual.igraph_drawing.edge.AbstractEdgeDrawer.draw_loop_edge"]], "draw_undirected_edge() (pypath.visual.igraph_drawing.edge.abstractedgedrawer method)": [[1233, "pypath.visual.igraph_drawing.edge.AbstractEdgeDrawer.draw_undirected_edge"]], "get_label_position() (pypath.visual.igraph_drawing.edge.abstractedgedrawer method)": [[1233, "pypath.visual.igraph_drawing.edge.AbstractEdgeDrawer.get_label_position"]], "alphavaryingedgedrawer (class in pypath.visual.igraph_drawing.edge)": [[1234, "pypath.visual.igraph_drawing.edge.AlphaVaryingEdgeDrawer"]], "__init__() (pypath.visual.igraph_drawing.edge.alphavaryingedgedrawer method)": [[1234, "pypath.visual.igraph_drawing.edge.AlphaVaryingEdgeDrawer.__init__"]], "draw_directed_edge() (pypath.visual.igraph_drawing.edge.alphavaryingedgedrawer method)": [[1234, "pypath.visual.igraph_drawing.edge.AlphaVaryingEdgeDrawer.draw_directed_edge"]], "draw_loop_edge() (pypath.visual.igraph_drawing.edge.alphavaryingedgedrawer method)": [[1234, "pypath.visual.igraph_drawing.edge.AlphaVaryingEdgeDrawer.draw_loop_edge"]], "draw_undirected_edge() (pypath.visual.igraph_drawing.edge.alphavaryingedgedrawer method)": [[1234, "pypath.visual.igraph_drawing.edge.AlphaVaryingEdgeDrawer.draw_undirected_edge"]], "get_label_position() (pypath.visual.igraph_drawing.edge.alphavaryingedgedrawer method)": [[1234, "pypath.visual.igraph_drawing.edge.AlphaVaryingEdgeDrawer.get_label_position"]], "arrowedgedrawer (class in pypath.visual.igraph_drawing.edge)": [[1235, "pypath.visual.igraph_drawing.edge.ArrowEdgeDrawer"]], "__init__() (pypath.visual.igraph_drawing.edge.arrowedgedrawer method)": [[1235, "pypath.visual.igraph_drawing.edge.ArrowEdgeDrawer.__init__"]], "draw_directed_edge() (pypath.visual.igraph_drawing.edge.arrowedgedrawer method)": [[1235, "pypath.visual.igraph_drawing.edge.ArrowEdgeDrawer.draw_directed_edge"]], "draw_loop_edge() (pypath.visual.igraph_drawing.edge.arrowedgedrawer method)": [[1235, "pypath.visual.igraph_drawing.edge.ArrowEdgeDrawer.draw_loop_edge"]], "draw_undirected_edge() (pypath.visual.igraph_drawing.edge.arrowedgedrawer method)": [[1235, "pypath.visual.igraph_drawing.edge.ArrowEdgeDrawer.draw_undirected_edge"]], "get_label_position() (pypath.visual.igraph_drawing.edge.arrowedgedrawer method)": [[1235, "pypath.visual.igraph_drawing.edge.ArrowEdgeDrawer.get_label_position"]], "darktolightedgedrawer (class in pypath.visual.igraph_drawing.edge)": [[1236, "pypath.visual.igraph_drawing.edge.DarkToLightEdgeDrawer"]], "__init__() (pypath.visual.igraph_drawing.edge.darktolightedgedrawer method)": [[1236, "pypath.visual.igraph_drawing.edge.DarkToLightEdgeDrawer.__init__"]], "draw_directed_edge() (pypath.visual.igraph_drawing.edge.darktolightedgedrawer method)": [[1236, "pypath.visual.igraph_drawing.edge.DarkToLightEdgeDrawer.draw_directed_edge"]], "draw_loop_edge() (pypath.visual.igraph_drawing.edge.darktolightedgedrawer method)": [[1236, "pypath.visual.igraph_drawing.edge.DarkToLightEdgeDrawer.draw_loop_edge"]], "draw_undirected_edge() (pypath.visual.igraph_drawing.edge.darktolightedgedrawer method)": [[1236, "pypath.visual.igraph_drawing.edge.DarkToLightEdgeDrawer.draw_undirected_edge"]], "get_label_position() (pypath.visual.igraph_drawing.edge.darktolightedgedrawer method)": [[1236, "pypath.visual.igraph_drawing.edge.DarkToLightEdgeDrawer.get_label_position"]], "lighttodarkedgedrawer (class in pypath.visual.igraph_drawing.edge)": [[1237, "pypath.visual.igraph_drawing.edge.LightToDarkEdgeDrawer"]], "__init__() (pypath.visual.igraph_drawing.edge.lighttodarkedgedrawer method)": [[1237, "pypath.visual.igraph_drawing.edge.LightToDarkEdgeDrawer.__init__"]], "draw_directed_edge() (pypath.visual.igraph_drawing.edge.lighttodarkedgedrawer method)": [[1237, "pypath.visual.igraph_drawing.edge.LightToDarkEdgeDrawer.draw_directed_edge"]], "draw_loop_edge() (pypath.visual.igraph_drawing.edge.lighttodarkedgedrawer method)": [[1237, "pypath.visual.igraph_drawing.edge.LightToDarkEdgeDrawer.draw_loop_edge"]], "draw_undirected_edge() (pypath.visual.igraph_drawing.edge.lighttodarkedgedrawer method)": [[1237, "pypath.visual.igraph_drawing.edge.LightToDarkEdgeDrawer.draw_undirected_edge"]], "get_label_position() (pypath.visual.igraph_drawing.edge.lighttodarkedgedrawer method)": [[1237, "pypath.visual.igraph_drawing.edge.LightToDarkEdgeDrawer.get_label_position"]], "taperededgedrawer (class in pypath.visual.igraph_drawing.edge)": [[1238, "pypath.visual.igraph_drawing.edge.TaperedEdgeDrawer"]], "__init__() (pypath.visual.igraph_drawing.edge.taperededgedrawer method)": [[1238, "pypath.visual.igraph_drawing.edge.TaperedEdgeDrawer.__init__"]], "draw_directed_edge() (pypath.visual.igraph_drawing.edge.taperededgedrawer method)": [[1238, "pypath.visual.igraph_drawing.edge.TaperedEdgeDrawer.draw_directed_edge"]], "draw_loop_edge() (pypath.visual.igraph_drawing.edge.taperededgedrawer method)": [[1238, "pypath.visual.igraph_drawing.edge.TaperedEdgeDrawer.draw_loop_edge"]], "draw_undirected_edge() (pypath.visual.igraph_drawing.edge.taperededgedrawer method)": [[1238, "pypath.visual.igraph_drawing.edge.TaperedEdgeDrawer.draw_undirected_edge"]], "get_label_position() (pypath.visual.igraph_drawing.edge.taperededgedrawer method)": [[1238, "pypath.visual.igraph_drawing.edge.TaperedEdgeDrawer.get_label_position"]], "pypath.visual.igraph_drawing.vertex": [[1239, "module-pypath.visual.igraph_drawing.vertex"]], "abstractcairodrawer (class in pypath.visual.igraph_drawing.vertex)": [[1240, "pypath.visual.igraph_drawing.vertex.AbstractCairoDrawer"]], "__init__() (pypath.visual.igraph_drawing.vertex.abstractcairodrawer method)": [[1240, "pypath.visual.igraph_drawing.vertex.AbstractCairoDrawer.__init__"]], "abstractcairovertexdrawer (class in pypath.visual.igraph_drawing.vertex)": [[1241, "pypath.visual.igraph_drawing.vertex.AbstractCairoVertexDrawer"]], "__init__() (pypath.visual.igraph_drawing.vertex.abstractcairovertexdrawer method)": [[1241, "pypath.visual.igraph_drawing.vertex.AbstractCairoVertexDrawer.__init__"]], "draw() (pypath.visual.igraph_drawing.vertex.abstractcairovertexdrawer method)": [[1241, "pypath.visual.igraph_drawing.vertex.AbstractCairoVertexDrawer.draw"]], "abstractdrawer (class in pypath.visual.igraph_drawing.vertex)": [[1242, "pypath.visual.igraph_drawing.vertex.AbstractDrawer"]], "__init__() (pypath.visual.igraph_drawing.vertex.abstractdrawer method)": [[1242, "pypath.visual.igraph_drawing.vertex.AbstractDrawer.__init__"]], "abstractvertexdrawer (class in pypath.visual.igraph_drawing.vertex)": [[1243, "pypath.visual.igraph_drawing.vertex.AbstractVertexDrawer"]], "__init__() (pypath.visual.igraph_drawing.vertex.abstractvertexdrawer method)": [[1243, "pypath.visual.igraph_drawing.vertex.AbstractVertexDrawer.__init__"]], "draw() (pypath.visual.igraph_drawing.vertex.abstractvertexdrawer method)": [[1243, "pypath.visual.igraph_drawing.vertex.AbstractVertexDrawer.draw"]], "defaultvertexdrawer (class in pypath.visual.igraph_drawing.vertex)": [[1244, "pypath.visual.igraph_drawing.vertex.DefaultVertexDrawer"]], "__init__() (pypath.visual.igraph_drawing.vertex.defaultvertexdrawer method)": [[1244, "pypath.visual.igraph_drawing.vertex.DefaultVertexDrawer.__init__"]], "draw() (pypath.visual.igraph_drawing.vertex.defaultvertexdrawer method)": [[1244, "pypath.visual.igraph_drawing.vertex.DefaultVertexDrawer.draw"]]}})
\ No newline at end of file
diff --git a/webservice.html b/webservice.html
index 70a547514..e43a07ff0 100644
--- a/webservice.html
+++ b/webservice.html
@@ -8,7 +8,7 @@
- Webservice — pypath 0.16.2 documentation
+ Webservice — pypath 0.16.3 documentation
@@ -37,7 +37,7 @@
-
+