From 9a2ff7e29a70fd3c12b5b3315cbd162cf5197259 Mon Sep 17 00:00:00 2001 From: Ksenia Date: Wed, 14 Aug 2024 15:14:51 +0100 Subject: [PATCH 1/3] Update test_gsMetZobe1.yaml --- assets/test_gsMetZobe1.yaml | 5 ++++- 1 file changed, 4 insertions(+), 1 deletion(-) diff --git a/assets/test_gsMetZobe1.yaml b/assets/test_gsMetZobe1.yaml index c115395..ad10c20 100644 --- a/assets/test_gsMetZobe1.yaml +++ b/assets/test_gsMetZobe1.yaml @@ -1,7 +1,10 @@ dataset: id: gsMetZobe1 illumina_10X: - reads: /lustre/scratch123/tol/resources/genomeassembly/testdata/gsMetZobe1/10x/ + reads: + - /lustre/scratch123/tol/resources/genomeassembly/testdata/gsMetZobe1/10x/gsMetZobe1_S6_L008_R1_001.fastq.gz + - /lustre/scratch123/tol/resources/genomeassembly/testdata/gsMetZobe1/10x/gsMetZobe1_S6_L008_R2_001.fastq.gz + - /lustre/scratch123/tol/resources/genomeassembly/testdata/gsMetZobe1/10x/gsMetZobe1_S6_L008_I1_001.fastq.gz pacbio: reads: - reads: /lustre/scratch123/tol/resources/genomeassembly/testdata/gsMetZobe1/pacbio/m64125_200823_145825.ccs.bc1019_BAK8B_OA--bc1019_BAK8B_OA.filtered.fasta.gz From f404581f91ac062c5a029bdcf801a7cba785e566 Mon Sep 17 00:00:00 2001 From: Ksenia Date: Wed, 14 Aug 2024 15:17:55 +0100 Subject: [PATCH 2/3] Update test_full.config Skip polishing in the full test --- conf/test_full.config | 1 - 1 file changed, 1 deletion(-) diff --git a/conf/test_full.config b/conf/test_full.config index e83aac0..eb2551f 100644 --- a/conf/test_full.config +++ b/conf/test_full.config @@ -22,6 +22,5 @@ params { // Input data for full size test input = "${projectDir}/assets/test_gsMetZobe1.yaml" - polishing_on = true hifiasm_hic_on = true } From 4b9abd5bbbdaf1f7c2dad933c748fe898dce4256 Mon Sep 17 00:00:00 2001 From: Ksenia Krasheninnikova Date: Wed, 14 Aug 2024 15:33:15 +0100 Subject: [PATCH 3/3] Prettier fix --- assets/test_gsMetZobe1.yaml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/assets/test_gsMetZobe1.yaml b/assets/test_gsMetZobe1.yaml index ad10c20..56f7a48 100644 --- a/assets/test_gsMetZobe1.yaml +++ b/assets/test_gsMetZobe1.yaml @@ -1,7 +1,7 @@ dataset: id: gsMetZobe1 illumina_10X: - reads: + reads: - /lustre/scratch123/tol/resources/genomeassembly/testdata/gsMetZobe1/10x/gsMetZobe1_S6_L008_R1_001.fastq.gz - /lustre/scratch123/tol/resources/genomeassembly/testdata/gsMetZobe1/10x/gsMetZobe1_S6_L008_R2_001.fastq.gz - /lustre/scratch123/tol/resources/genomeassembly/testdata/gsMetZobe1/10x/gsMetZobe1_S6_L008_I1_001.fastq.gz