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setup.py
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setup.py
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# -*- coding: utf-8 -*-
import sys, os, re
from setuptools import setup
from setuptools.command.test import test as TestCommand
def find_version():
filepath = os.path.join('gseapy', '__main__.py')
with open(os.path.join(os.path.dirname(__file__), filepath), encoding="utf8") as fp:
content = fp.read()
version_match = re.search(r"^__version__ = ['\"]([^'\"]*)['\"]", content, re.M)
if version_match:
return version_match.group(1)
raise RuntimeError("Unable to find version string.")
__author__ = 'Zhuoqing Fang'
__version__ = find_version()
if sys.argv[-1] == 'publish':
os.system("python setup.py sdist bdist_wheel register upload")
print("You probably want to also tag the version now:")
print(" git tag -a %s -m 'version %s'" % (__version__,__version__))
print(" git push --tags")
sys.exit()
class PyTest(TestCommand):
def finalize_options(self):
TestCommand.finalize_options(self)
self.test_args = []
self.test_suite = True
def run_tests(self):
#import here, cause outside the eggs aren't loaded
import pytest
errno = pytest.main(self.test_args)
sys.exit(errno)
def readme():
with open('README.rst') as f:
return f.read()
setup(name='gseapy',
version=__version__,
description='Gene Set Enrichment Analysis in Python',
long_description=readme(),
classifiers=[
'Development Status :: 4 - Beta',
'Intended Audience :: Science/Research',
'License :: OSI Approved :: MIT License',
'Programming Language :: Python :: 3',
'Operating System :: MacOS :: MacOS X',
'Operating System :: Microsoft :: Windows',
'Operating System :: POSIX',
'Topic :: Scientific/Engineering :: Bio-Informatics',
'Topic :: Software Development :: Libraries'],
keywords= ['Gene Ontology', 'GO','Biology', 'Enrichment',
'Bioinformatics', 'Computational Biology',],
url='https://github.com/zqfang/gseapy',
author='Zhuoqing Fang',
author_email='[email protected]',
license='MIT',
packages=['gseapy'],
package_data={'gseapy': ["data/*.txt"],},
include_package_data=True,
install_requires=[
'numpy>=1.13.0',
'scipy',
'pandas',
'matplotlib',
'bioservices',
'requests',
'joblib'],
entry_points={'console_scripts': ['gseapy = gseapy.__main__:main'],},
tests_require=['pytest'],
cmdclass = {'test': PyTest},
zip_safe=False,
download_url='https://github.com/zqfang/gseapy',)