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Issue with CD8 T cells annotated as CD4 T cells by Azimuth #24

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skurkalang opened this issue Oct 14, 2024 · 0 comments
Open

Issue with CD8 T cells annotated as CD4 T cells by Azimuth #24

skurkalang opened this issue Oct 14, 2024 · 0 comments

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@skurkalang
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We used Azimuth to annotate the T cell subtypes, most cells were annotated as CD4 T cells but when check with CD8A, CD8B and CD4 expression, majority of them were CD8 T cells.

We then manually subset the CD8 and CD4 T cells based on CD8A, CD8B and CD4 and re run the Azimuth on the CD8 T cells , most CD8 T cells were still classified as CD4 T cells.

How to solve this issue?

Thank you in advance

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