From 38aebf7237d84f8931c68a2f486db8665c012995 Mon Sep 17 00:00:00 2001 From: scarlhoff Date: Mon, 1 Jul 2024 15:45:39 +0200 Subject: [PATCH] update contamination results --- .../2023_Carlhoff_Thailand.janno | 66 +++++++++---------- 2023_Carlhoff_Thailand/POSEIDON.yml | 2 +- 2 files changed, 34 insertions(+), 34 deletions(-) diff --git a/2023_Carlhoff_Thailand/2023_Carlhoff_Thailand.janno b/2023_Carlhoff_Thailand/2023_Carlhoff_Thailand.janno index 880fa685..dd1ba97c 100644 --- a/2023_Carlhoff_Thailand/2023_Carlhoff_Thailand.janno +++ b/2023_Carlhoff_Thailand/2023_Carlhoff_Thailand.janno @@ -1,34 +1,34 @@ Poseidon_ID Collection_ID Group_Name Relation_To Relation_Degree Relation_Type Relation_Note Country Country_ISO Location Site Latitude Longitude Date_C14_Labnr Date_C14_Uncal_BP Date_C14_Uncal_BP_Err Date_BC_AD_Median Date_BC_AD_Start Date_BC_AD_Stop Date_Type Genetic_Sex MT_Haplogroup Y_Haplogroup Source_Tissue Nr_Libraries Library_Names Capture_Type UDG Library_Built Genotype_Ploidy Data_Preparation_Pipeline_URL Endogenous Nr_SNPs Coverage_on_Target_SNPs Damage Contamination Contamination_Err Contamination_Meas Contamination_Note Genetic_Source_Accession_ID Primary_Contact Publication Keywords -THL004 TL 878 S2 #14 31.1.47 Thailand_1700BP KINv.3.1.3 Thailand TH Mae Hong Son Tham Lod cave 19.568211 98.27972 MAMS-40599 1724 21 318 258 377 C14 F F1a1a1 tooth 1 THL004.A0101.TF 1240K half ds haploid https://raw.githubusercontent.com/scarlhoff/Log_Coffin_project/main/Log_Coffin_project_eager2_1240k.yml 5.49 192331 0.2 17.0 0.01 ContamMix v.1.0-10 PRJEB59488;SAMEA112466638;ERR10833049 Selina Carlhoff CarlhoffNatureCommunications2023 SoutheastAsia;Thailand;LogCoffin;IronAge -YPN007 YN2#RM-02 Yappa Nhae 2 (R) Petreus 526 14/02/18 Thailand_1700BP KINv.3.1.3 Thailand TH Mae Hong Son Yappa Nhae 2 19.6034 98.2432 340 -70 750 contextual M M24b N1b1 bone_petrous 1 YPN007.A0101.TF 1240K half ds haploid https://raw.githubusercontent.com/scarlhoff/Log_Coffin_project/main/Log_Coffin_project_eager2_1240k.yml 7.89 537949 0.8 9.5 0 0 ANGSD v.0.935 0.01 ContamMix v.1.0-10 PRJEB59488;SAMEA112466643;ERR10833054 Selina Carlhoff CarlhoffNatureCommunications2023 SoutheastAsia;Thailand;LogCoffin;IronAge -YPN002 YN2#LP01 Yappa Nhae (L) Petrous 2 14/02/18 Thailand_1700BP YPN032;YPN033 second;second KINv.3.1.3 Thailand TH Mae Hong Son Yappa Nhae 2 19.6034 98.2432 340 -70 750 contextual F F1a1a1 bone_petrous 1 YPN002.A0101.TF 1240K half ds haploid https://raw.githubusercontent.com/scarlhoff/Log_Coffin_project/main/Log_Coffin_project_eager2_1240k.yml 2.36 203446 0.2 16.8 0.01 ContamMix v.1.0-10 PRJEB59488;SAMEA112466640;ERR10833051 Selina Carlhoff CarlhoffNatureCommunications2023 SoutheastAsia;Thailand;LogCoffin;IronAge -BRB003 BN 554 #44 Thailand_1700BP KINv.3.1.3 Thailand TH Mae Hong Son Ban Rai rockshelter 19.5219 98.1753 MAMS-40600 1811 21 191 142 240 C14 F F1f tooth 1 BRB003.A0101.TF 1240K half ds haploid https://raw.githubusercontent.com/scarlhoff/Log_Coffin_project/main/Log_Coffin_project_eager2_1240k.yml 0.71 74647 0.1 10.1 0.01 ContamMix v.1.0-10 PRJEB59488;SAMEA112466634;ERR10833045 Selina Carlhoff CarlhoffNatureCommunications2023 SoutheastAsia;Thailand;LogCoffin;IronAge -THL003 TL 880 S2 #14 31.1.47 Thailand_1700BP KINv.3.1.3 Thailand TH Mae Hong Son Tham Lod cave 19.568211 98.27972 MAMS-40598 1653 21 401 384 418 C14 F F1f tooth 1 THL003.A0101.TF 1240K half ds haploid https://raw.githubusercontent.com/scarlhoff/Log_Coffin_project/main/Log_Coffin_project_eager2_1240k.yml 1.03 52907 0.05 13.1 0.02 ContamMix v.1.0-10 PRJEB59488;SAMEA112466637;ERR10833048 Selina Carlhoff CarlhoffNatureCommunications2023 SoutheastAsia;Thailand;LogCoffin;IronAge -YPN018 YN2#LT-07 Yappa Nhae 2 (L) Petrous part of Temporal bone 8 Thailand_1700BP KINv.3.1.3 Thailand TH Mae Hong Son Yappa Nhae 2 19.6034 98.2432 340 -70 750 contextual M G2b1a O2a2b1a1a1a4a2 bone_petrous 1 YPN018.A0101.TF 1240K half ds haploid https://raw.githubusercontent.com/scarlhoff/Log_Coffin_project/main/Log_Coffin_project_eager2_1240k.yml 2.26 209963 0.2 13.8 0 0 ANGSD v.0.935 0 ContamMix v.1.0-10 PRJEB59488;SAMEA112466653;ERR10833064 Selina Carlhoff CarlhoffNatureCommunications2023 SoutheastAsia;Thailand;LogCoffin;IronAge -YPN016 YN2#RT-04 Yappa Nhae 2 (R) Thailand_1700BP KINv.3.1.3 Thailand TH Mae Hong Son Yappa Nhae 2 19.6034 98.2432 MAMS-40610 1796 21 325 265 384 C14 F N8* bone_petrous 1 YPN016.A0101.TF 1240K half ds haploid https://raw.githubusercontent.com/scarlhoff/Log_Coffin_project/main/Log_Coffin_project_eager2_1240k.yml 58.79 647252 1 10.6 0.02 ContamMix v.1.0-10 PRJEB59488;SAMEA112466651;ERR10833062 Selina Carlhoff CarlhoffNatureCommunications2023 SoutheastAsia;Thailand;LogCoffin;IronAge -YPN003 YN2#RM-01 Yappa Nhae 2 (R) Petreus 526 14/02/18 Thailand_1700BP KINv.3.1.3 Thailand TH Mae Hong Son Yappa Nhae 2 19.6034 98.2432 340 -70 750 contextual M M24b N1b bone_petrous 1 YPN003.A0102.TF 1240K half ds haploid https://raw.githubusercontent.com/scarlhoff/Log_Coffin_project/main/Log_Coffin_project_eager2_1240k.yml 7.51 499444 0.7 16.1 0 0 ANGSD v.0.935 0.01 ContamMix v.1.0-10 PRJEB59488;SAMEA112466641;ERR10833052 Selina Carlhoff CarlhoffNatureCommunications2023 SoutheastAsia;Thailand;LogCoffin;IronAge -YPN025 YN2#LT-08 Yappa Nhae 2 (L) Petrous part of Temporal bone 15 Thailand_1700BP KINv.3.1.3 Thailand TH Mae Hong Son Yappa Nhae 2 19.6034 98.2432 MAMS-40611 1793 26 232 145 318 C14 M D5a2a1+@16172 C2b1 bone_petrous 1 YPN025.A0101.TF 1240K half ds haploid https://raw.githubusercontent.com/scarlhoff/Log_Coffin_project/main/Log_Coffin_project_eager2_1240k.yml 41.18 633197 1.1 19.0 0 0 ANGSD v.0.935 0.02 ContamMix v.1.0-10 PRJEB59488;SAMEA112466659;ERR10833070 Selina Carlhoff CarlhoffNatureCommunications2023 SoutheastAsia;Thailand;LogCoffin;IronAge -YPN021 YN2#LT-05 Yappa Nhae 2 (L) Petrous part of Temporal bone 11 Thailand_1700BP YPN014 first parent_child KINv.3.1.3 Thailand TH Mae Hong Son Yappa Nhae 2 19.6034 98.2432 340 -70 750 contextual F M7b1a1 bone_petrous 1 YPN021.A0101.TF 1240K half ds haploid https://raw.githubusercontent.com/scarlhoff/Log_Coffin_project/main/Log_Coffin_project_eager2_1240k.yml 15.58 529293 0.8 15.6 0.01 ContamMix v.1.0-10 PRJEB59488;SAMEA112466656;ERR10833067 Selina Carlhoff CarlhoffNatureCommunications2023 SoutheastAsia;Thailand;LogCoffin;IronAge -YPN036 YN2 478 #35 Thailand_1700BP.contam KINv.3.1.3 Thailand TH Mae Hong Son Yappa Nhae 2 19.6034 98.2432 340 -70 750 contextual U n/a tooth 1 YPN036.A0101.TF 1240K half ds haploid https://raw.githubusercontent.com/scarlhoff/Log_Coffin_project/main/Log_Coffin_project_eager2_1240k.yml 0.84 101945 0.1 15.2 0.06 ContamMix v.1.0-10 PRJEB59488;SAMEA112466666;ERR10833077 Selina Carlhoff CarlhoffNatureCommunications2023 SoutheastAsia;Thailand;LogCoffin;IronAge -YPN006 YN2#RM-05 Yappa Nhae 2 (R) Petreus 526 14/02/18 Thailand_1700BP KINv.3.1.3 Thailand TH Mae Hong Son Yappa Nhae 2 19.6034 98.2432 340 -70 750 contextual M F1f O1b1a1 bone_petrous 1 YPN006.A0101.TF 1240K half ds haploid https://raw.githubusercontent.com/scarlhoff/Log_Coffin_project/main/Log_Coffin_project_eager2_1240k.yml 5.05 489787 0.7 10.2 0 0 ANGSD v.0.935 0.01 ContamMix v.1.0-10 PRJEB59488;SAMEA112466642;ERR10833053 Selina Carlhoff CarlhoffNatureCommunications2023 SoutheastAsia;Thailand;LogCoffin;IronAge -YPN010 YN2#Mdcave 01 Yappa Nhae 2 Middle Cave Petrous 4 ps 13/02/20 Thailand_1700BP YPN011 second grandparent_grandchild KINv.3.1.3 Thailand TH Mae Hong Son Yappa Nhae 2 19.6034 98.2432 340 -70 750 contextual F F1a1a1 bone_petrous 1 YPN010.A0101.TF 1240K half ds haploid https://raw.githubusercontent.com/scarlhoff/Log_Coffin_project/main/Log_Coffin_project_eager2_1240k.yml 17.25 699987 1.3 8.7 0.01 ContamMix v.1.0-10 PRJEB59488;SAMEA112466646;ERR10833057 Selina Carlhoff CarlhoffNatureCommunications2023 SoutheastAsia;Thailand;LogCoffin;IronAge -YPN017 YN2#RT-05 Yappa Nhae 2 (R) Thailand_1700BP KINv.3.1.3 Thailand TH Mae Hong Son Yappa Nhae 2 19.6034 98.2432 340 -70 750 contextual M N8* O1b1a1a1b bone_petrous 1 YPN017.A0101.TF 1240K half ds haploid https://raw.githubusercontent.com/scarlhoff/Log_Coffin_project/main/Log_Coffin_project_eager2_1240k.yml 9.96 509713 0.7 12.3 0 0 ANGSD v.0.935 0.01 ContamMix v.1.0-10 PRJEB59488;SAMEA112466652;ERR10833063 Selina Carlhoff CarlhoffNatureCommunications2023 SoutheastAsia;Thailand;LogCoffin;IronAge -YPN020 YN2#LT-04 Yappa Nhae 2 (L) Petrous part of Temporal bone 10 Thailand_1700BP KINv.3.1.3 Thailand TH Mae Hong Son Yappa Nhae 2 19.6034 98.2432 340 -70 750 contextual F M74 bone_petrous 1 YPN020.A0101.TF 1240K half ds haploid https://raw.githubusercontent.com/scarlhoff/Log_Coffin_project/main/Log_Coffin_project_eager2_1240k.yml 15.94 710459 1.3 8.6 0.01 ContamMix v.1.0-10 PRJEB59488;SAMEA112466655;ERR10833066 Selina Carlhoff CarlhoffNatureCommunications2023 SoutheastAsia;Thailand;LogCoffin;IronAge -YPN032 YN1-MHS'05 Yappa Nhae 1 #19/18 MHS'5 Skull #(1) Petrous? Child 2 ps 12/02/18 Thailand_1700BP YPN033;YPN002 identical;second same_as;second KINv.3.1.3 Thailand TH Mae Hong Son Yappa Nhae 1 19.603809 98.240571 250 -250 750 contextual F F1f bone_petrous 1 YPN032.A0101.TF 1240K half ds haploid https://raw.githubusercontent.com/scarlhoff/Log_Coffin_project/main/Log_Coffin_project_eager2_1240k.yml 4.45 266799 0.3 16.3 0.02 ContamMix v.1.0-10 PRJEB59488;SAMEA112466664;ERR10833075 Selina Carlhoff CarlhoffNatureCommunications2023 SoutheastAsia;Thailand;LogCoffin;IronAge -LHP002 LHP#17 left Thailand_1700BP KINv.3.1.3 Thailand TH Mae Hong Son Lahu Pot/Moa Mussur 19.5886 98.2618 MAMS-40601 1754 23 287 246 327 C14 M M23'75 O1b1a1a1b1 bone_petrous 1 LHP002.A0101.TF 1240K half ds haploid https://raw.githubusercontent.com/scarlhoff/Log_Coffin_project/main/Log_Coffin_project_eager2_1240k.yml 0.84 469997 0.8 9.4 0 0 ANGSD v.0.935 0 ContamMix v.1.0-10 PRJEB59488;SAMEA112466635;ERR10833046 Selina Carlhoff CarlhoffNatureCommunications2023 SoutheastAsia;Thailand;LogCoffin;IronAge -YPN014 YN2#RT-06 Yappa Nhae 2 (R) Thailand_1700BP.1stYPN021 YPN021;YPN027 first;second parent_child;second KINv.3.1.3 Thailand TH Mae Hong Son Yappa Nhae 2 19.6034 98.2432 340 -70 750 contextual M M7b1a1 O2a2b1a1a1 bone_petrous 1 YPN014.A0101.TF 1240K half ds haploid https://raw.githubusercontent.com/scarlhoff/Log_Coffin_project/main/Log_Coffin_project_eager2_1240k.yml 2.76 150455 0.1 13.2 0 0 ANGSD v.0.935 0 ContamMix v.1.0-10 PRJEB59488;SAMEA112466650;ERR10833061 Selina Carlhoff CarlhoffNatureCommunications2023 SoutheastAsia;Thailand;LogCoffin;IronAge -YPN027 YB2#ZoneA2-02Yappa Nhae 2 Zone A2 Petrous 2 ps 13/02/19 Thailand_1700BP YPN014 second second KINv.3.1.3 Thailand TH Mae Hong Son Yappa Nhae 2 19.6034 98.2432 340 -70 750 contextual M F1f O2a2b1a1a1a4a bone_petrous 1 YPN027.A0101.TF 1240K half ds haploid https://raw.githubusercontent.com/scarlhoff/Log_Coffin_project/main/Log_Coffin_project_eager2_1240k.yml 14.67 517358 0.7 10.6 0 0 ANGSD v.0.935 0 ContamMix v.1.0-10 PRJEB59488;SAMEA112466660;ERR10833071 Selina Carlhoff CarlhoffNatureCommunications2023 SoutheastAsia;Thailand;LogCoffin;IronAge -YPN001 YN2#LM01 Yappa Nhae (L) Petrous 2 14/02/18 Thailand_1700BP KINv.3.1.3 Thailand TH Mae Hong Son Yappa Nhae 2 19.6034 98.2432 340 -70 750 contextual F M55 bone_petrous 1 YPN001.A0101.TF 1240K half ds haploid https://raw.githubusercontent.com/scarlhoff/Log_Coffin_project/main/Log_Coffin_project_eager2_1240k.yml 3.41 403681 0.5 13.0 0.01 ContamMix v.1.0-10 PRJEB59488;SAMEA112466639;ERR10833050 Selina Carlhoff CarlhoffNatureCommunications2023 SoutheastAsia;Thailand;LogCoffin;IronAge -YPN019 YN2#LT-03 Yappa Nhae 2 (L) Petrous part of Temporal bone 9 Thailand_1700BP KINv.3.1.3 Thailand TH Mae Hong Son Yappa Nhae 2 19.6034 98.2432 340 -70 750 contextual M M69 O1b1a1a1b bone_petrous 1 YPN019.A0101.TF 1240K half ds haploid https://raw.githubusercontent.com/scarlhoff/Log_Coffin_project/main/Log_Coffin_project_eager2_1240k.yml 4.78 413444 0.5 13.1 0 0 ANGSD v.0.935 0.01 ContamMix v.1.0-10 PRJEB59488;SAMEA112466654;ERR10833065 Selina Carlhoff CarlhoffNatureCommunications2023 SoutheastAsia;Thailand;LogCoffin;IronAge -YPN033 YN1#19/18 Yappa Nhae 1 #19/18 MHS'5 Skull #(1) Petrous? Child 2 ps 12/02/19 Thailand_1700BP.identYPN032 YPN032;YPN002 identical;second same_as;second KINv.3.1.3 Thailand TH Mae Hong Son Yappa Nhae 1 19.603809 98.240571 250 -250 750 contextual F n/a bone_petrous 1 YPN033.A0101.TF 1240K half ds haploid https://raw.githubusercontent.com/scarlhoff/Log_Coffin_project/main/Log_Coffin_project_eager2_1240k.yml 0.76 224205 0.2 16.0 0.01 ContamMix v.1.0-10 PRJEB59488;SAMEA112466665;ERR10833076 Selina Carlhoff CarlhoffNatureCommunications2023 SoutheastAsia;Thailand;LogCoffin;IronAge -YPN009 YN2#Mdcave 03 Yappa Nhae 2 Middle Cave Petrous 4 ps 13/02/19 Thailand_1700BP KINv.3.1.3 Thailand TH Mae Hong Son Yappa Nhae 2 19.6034 98.2432 340 -70 750 contextual M N8* O2a2b1a1a1a4a bone_petrous 1 YPN009.A0101.TF 1240K half ds haploid https://raw.githubusercontent.com/scarlhoff/Log_Coffin_project/main/Log_Coffin_project_eager2_1240k.yml 4.69 415482 0.5 11.6 0 0 ANGSD v.0.935 0.02 ContamMix v.1.0-10 PRJEB59488;SAMEA112466645;ERR10833056 Selina Carlhoff CarlhoffNatureCommunications2023 SoutheastAsia;Thailand;LogCoffin;IronAge -YPN013 YN2#RT-01 Yappa Nhae 2 (R) Thailand_1700BP KINv.3.1.3 Thailand TH Mae Hong Son Yappa Nhae 2 19.6034 98.2432 340 -70 750 contextual F F1a1a1 bone_petrous 1 YPN013.A0101.TF 1240K half ds haploid https://raw.githubusercontent.com/scarlhoff/Log_Coffin_project/main/Log_Coffin_project_eager2_1240k.yml 9.02 651991 1.1 9.4 0.01 ContamMix v.1.0-10 PRJEB59488;SAMEA112466649;ERR10833060 Selina Carlhoff CarlhoffNatureCommunications2023 SoutheastAsia;Thailand;LogCoffin;IronAge -YPN011 YP2#mdcave04 Yappa Nhae 2 Middle Cave Petrous 4 ps 13/02/21 Thailand_1700BP YPN010 second grandparent_grandchild KINv.3.1.3 Thailand TH Mae Hong Son Yappa Nhae 2 19.6034 98.2432 MAMS-40609 1698 20 362 336 387 C14 M F1f O1b1a1a1b bone_petrous 1 YPN011.A0101.TF 1240K half ds haploid https://raw.githubusercontent.com/scarlhoff/Log_Coffin_project/main/Log_Coffin_project_eager2_1240k.yml 35.74 709086 1.4 13.3 0 0 ANGSD v.0.935 0.01 ContamMix v.1.0-10 PRJEB59488;SAMEA112466647;ERR10833058 Selina Carlhoff CarlhoffNatureCommunications2023 SoutheastAsia;Thailand;LogCoffin;IronAge -YPN012 YN2#RT02 Yappa Nhae 2 (R) Thailand_1700BP KINv.3.1.3 Thailand TH Mae Hong Son Yappa Nhae 2 19.6034 98.2432 340 -70 750 contextual F M32'56 bone_petrous 1 YPN012.A0101.TF 1240K half ds haploid https://raw.githubusercontent.com/scarlhoff/Log_Coffin_project/main/Log_Coffin_project_eager2_1240k.yml 6.56 469818 0.7 12.2 0.01 ContamMix v.1.0-10 PRJEB59488;SAMEA112466648;ERR10833059 Selina Carlhoff CarlhoffNatureCommunications2023 SoutheastAsia;Thailand;LogCoffin;IronAge -YPN031 YN2#29/41-3 Yappa Nhae 2 #29/41 Petrous part of remporal bone (child) 4? Thailand_1700BP KINv.3.1.3 Thailand TH Mae Hong Son Yappa Nhae 2 19.6034 98.2432 340 -70 750 contextual F M7b1a1 bone_petrous 1 YPN031.A0101.TF 1240K half ds haploid https://raw.githubusercontent.com/scarlhoff/Log_Coffin_project/main/Log_Coffin_project_eager2_1240k.yml 4.95 261374 0.3 15.6 0.03 ContamMix v.1.0-10 PRJEB59488;SAMEA112466663;ERR10833074 Selina Carlhoff CarlhoffNatureCommunications2023 SoutheastAsia;Thailand;LogCoffin;IronAge -YPN008 YN2#Mdcave02 Yappa Nhae 2 Middle Cave Petrous 4 ps 13/02/18 Thailand_1700BP KINv.3.1.3 Thailand TH Mae Hong Son Yappa Nhae 2 19.6034 98.2432 MAMS-40608 1717 20 320 260 380 C14 M D5a2a1+@16172 N1b1 bone_petrous 1 YPN008.A0101.TF 1240K half ds haploid https://raw.githubusercontent.com/scarlhoff/Log_Coffin_project/main/Log_Coffin_project_eager2_1240k.yml 37.65 755278 1.5 10.8 0 0 ANGSD v.0.935 0.01 ContamMix v.1.0-10 PRJEB59488;SAMEA112466644;ERR10833055 Selina Carlhoff CarlhoffNatureCommunications2023 SoutheastAsia;Thailand;LogCoffin;IronAge -YPN023 YP2#LT01 Yappa Nhae 2 (L) Petrous part of Temporal bone 13 Thailand_1700BP KINv.3.1.3 Thailand TH Mae Hong Son Yappa Nhae 2 19.6034 98.2432 340 -70 750 contextual F G2b1a bone_petrous 1 YPN023.A0101.TF 1240K half ds haploid https://raw.githubusercontent.com/scarlhoff/Log_Coffin_project/main/Log_Coffin_project_eager2_1240k.yml 10.63 624088 1 12.8 0.02 ContamMix v.1.0-10 PRJEB59488;SAMEA112466658;ERR10833069 Selina Carlhoff CarlhoffNatureCommunications2023 SoutheastAsia;Thailand;LogCoffin;IronAge -YPN028 YN2#29/41-1Yappa Nhae 2 #29/41 Petrous part of remporal bone (child) 4? Thailand_1700BP KINv.3.1.3 Thailand TH Mae Hong Son Yappa Nhae 2 19.6034 98.2432 340 -70 750 contextual F n/a bone_petrous 1 YPN028.A0101.TF 1240K half ds haploid https://raw.githubusercontent.com/scarlhoff/Log_Coffin_project/main/Log_Coffin_project_eager2_1240k.yml 0.94 193760 0.2 15.6 0.03 ContamMix v.1.0-10 PRJEB59488;SAMEA112466661;ERR10833072 Selina Carlhoff CarlhoffNatureCommunications2023 SoutheastAsia;Thailand;LogCoffin;IronAge -YPN022 YN2#LT-02 Yappa Nhae 2 (L) Petrous part of Temporal bone 12 Thailand_1700BP KINv.3.1.3 Thailand TH Mae Hong Son Yappa Nhae 2 19.6034 98.2432 340 -70 750 contextual F F1a1a1 bone_petrous 1 YPN022.A0101.TF 1240K half ds haploid https://raw.githubusercontent.com/scarlhoff/Log_Coffin_project/main/Log_Coffin_project_eager2_1240k.yml 15.21 559709 0.9 12.1 0.01 ContamMix v.1.0-10 PRJEB59488;SAMEA112466657;ERR10833068 Selina Carlhoff CarlhoffNatureCommunications2023 SoutheastAsia;Thailand;LogCoffin;IronAge -THL002 TL#24/10 , L petrous part og petrous bone (Child) #24/10, Thailand_1700BP KINv.3.1.3 Thailand TH Mae Hong Son Tham Lod cave 19.568211 98.27972 MAMS-40597 1754 21 287 248 326 C14 F F1f bone_petrous 1 THL002.A0101.TF 1240K half ds haploid https://raw.githubusercontent.com/scarlhoff/Log_Coffin_project/main/Log_Coffin_project_eager2_1240k.yml 12.95 698906 1.5 26.8 0.01 ContamMix v.1.0-10 PRJEB59488;SAMEA112466636;ERR10833047 Selina Carlhoff CarlhoffNatureCommunications2023 SoutheastAsia;Thailand;LogCoffin;IronAge -YPN030 YN2#29/41-3 Yappa Nhae 2 #29/41 Petrous part of remporal bone (child) 4? Thailand_1700BP KINv.3.1.3 Thailand TH Mae Hong Son Yappa Nhae 2 19.6034 98.2432 340 -70 750 contextual M F1a1a1 O2a2b1a1a1a4a2 bone_petrous 1 YPN030.A0101.TF 1240K half ds haploid https://raw.githubusercontent.com/scarlhoff/Log_Coffin_project/main/Log_Coffin_project_eager2_1240k.yml 11.38 935220 2.9 10.6 0 0 ANGSD v.0.935 0.01 ContamMix v.1.0-10 PRJEB59488;SAMEA112466662;ERR10833073 Selina Carlhoff CarlhoffNatureCommunications2023 SoutheastAsia;Thailand;LogCoffin;IronAge +THL004 TL 878 S2 #14 31.1.47 Thailand_1700BP KINv.3.1.3 Thailand TH Mae Hong Son Tham Lod cave 19.568211 98.27972 MAMS-40599 1724 21 318 258 377 C14 F F1a1a1 tooth 1 THL004.A0101.TF 1240K half ds haploid https://raw.githubusercontent.com/scarlhoff/Log_Coffin_project/main/Log_Coffin_project_eager2_1240k.yml 5.49 192331 0.2 17 0.01 0.01 ContamMix v.1.0-10 PRJEB59488;SAMEA112466638;ERR10833049 Selina Carlhoff CarlhoffNatureCommunications2023 SoutheastAsia;Thailand;LogCoffin;IronAge +YPN007 YN2#RM-02 Yappa Nhae 2 (R) Petreus 526 14/02/18 Thailand_1700BP KINv.3.1.3 Thailand TH Mae Hong Son Yappa Nhae 2 19.6034 98.2432 340 -70 750 contextual M M24b N1b1 bone_petrous 1 YPN007.A0101.TF 1240K half ds haploid https://raw.githubusercontent.com/scarlhoff/Log_Coffin_project/main/Log_Coffin_project_eager2_1240k.yml 7.89 537949 0.8 9.5 0.01;0 0.01;0 ContamMix v.1.0-10;ANGSD v.0.935 PRJEB59488;SAMEA112466643;ERR10833054 Selina Carlhoff CarlhoffNatureCommunications2023 SoutheastAsia;Thailand;LogCoffin;IronAge +YPN002 YN2#LP01 Yappa Nhae (L) Petrous 2 14/02/18 Thailand_1700BP YPN032;YPN033 second;second KINv.3.1.3 Thailand TH Mae Hong Son Yappa Nhae 2 19.6034 98.2432 340 -70 750 contextual F F1a1a1 bone_petrous 1 YPN002.A0101.TF 1240K half ds haploid https://raw.githubusercontent.com/scarlhoff/Log_Coffin_project/main/Log_Coffin_project_eager2_1240k.yml 2.36 203446 0.2 16.8 0.01 0.02 ContamMix v.1.0-10 PRJEB59488;SAMEA112466640;ERR10833051 Selina Carlhoff CarlhoffNatureCommunications2023 SoutheastAsia;Thailand;LogCoffin;IronAge +BRB003 BN 554 #44 Thailand_1700BP KINv.3.1.3 Thailand TH Mae Hong Son Ban Rai rockshelter 19.5219 98.1753 MAMS-40600 1811 21 191 142 240 C14 F F1f tooth 1 BRB003.A0101.TF 1240K half ds haploid https://raw.githubusercontent.com/scarlhoff/Log_Coffin_project/main/Log_Coffin_project_eager2_1240k.yml 0.71 74647 0.1 10.1 0.01 0.01 ContamMix v.1.0-10 PRJEB59488;SAMEA112466634;ERR10833045 Selina Carlhoff CarlhoffNatureCommunications2023 SoutheastAsia;Thailand;LogCoffin;IronAge +THL003 TL 880 S2 #14 31.1.47 Thailand_1700BP KINv.3.1.3 Thailand TH Mae Hong Son Tham Lod cave 19.568211 98.27972 MAMS-40598 1653 21 401 384 418 C14 F F1f tooth 1 THL003.A0101.TF 1240K half ds haploid https://raw.githubusercontent.com/scarlhoff/Log_Coffin_project/main/Log_Coffin_project_eager2_1240k.yml 1.03 52907 0.05 13.1 0.02 0.01 ContamMix v.1.0-10 PRJEB59488;SAMEA112466637;ERR10833048 Selina Carlhoff CarlhoffNatureCommunications2023 SoutheastAsia;Thailand;LogCoffin;IronAge +YPN018 YN2#LT-07 Yappa Nhae 2 (L) Petrous part of Temporal bone 8 Thailand_1700BP KINv.3.1.3 Thailand TH Mae Hong Son Yappa Nhae 2 19.6034 98.2432 340 -70 750 contextual M G2b1a O2a2b1a1a1a4a2 bone_petrous 1 YPN018.A0101.TF 1240K half ds haploid https://raw.githubusercontent.com/scarlhoff/Log_Coffin_project/main/Log_Coffin_project_eager2_1240k.yml 2.26 209963 0.2 13.8 0;0 0;0 ContamMix v.1.0-10;ANGSD v.0.935 PRJEB59488;SAMEA112466653;ERR10833064 Selina Carlhoff CarlhoffNatureCommunications2023 SoutheastAsia;Thailand;LogCoffin;IronAge +YPN016 YN2#RT-04 Yappa Nhae 2 (R) Thailand_1700BP KINv.3.1.3 Thailand TH Mae Hong Son Yappa Nhae 2 19.6034 98.2432 MAMS-40610 1796 21 325 265 384 C14 F N8* bone_petrous 1 YPN016.A0101.TF 1240K half ds haploid https://raw.githubusercontent.com/scarlhoff/Log_Coffin_project/main/Log_Coffin_project_eager2_1240k.yml 58.79 647252 1 10.6 0.02 0.005 ContamMix v.1.0-10 PRJEB59488;SAMEA112466651;ERR10833062 Selina Carlhoff CarlhoffNatureCommunications2023 SoutheastAsia;Thailand;LogCoffin;IronAge +YPN003 YN2#RM-01 Yappa Nhae 2 (R) Petreus 526 14/02/18 Thailand_1700BP KINv.3.1.3 Thailand TH Mae Hong Son Yappa Nhae 2 19.6034 98.2432 340 -70 750 contextual M M24b N1b bone_petrous 1 YPN003.A0102.TF 1240K half ds haploid https://raw.githubusercontent.com/scarlhoff/Log_Coffin_project/main/Log_Coffin_project_eager2_1240k.yml 7.51 499444 0.7 16.1 0.01;0 0.01;0 ContamMix v.1.0-10;ANGSD v.0.935 PRJEB59488;SAMEA112466641;ERR10833052 Selina Carlhoff CarlhoffNatureCommunications2023 SoutheastAsia;Thailand;LogCoffin;IronAge +YPN025 YN2#LT-08 Yappa Nhae 2 (L) Petrous part of Temporal bone 15 Thailand_1700BP KINv.3.1.3 Thailand TH Mae Hong Son Yappa Nhae 2 19.6034 98.2432 MAMS-40611 1793 26 232 145 318 C14 M D5a2a1+@16172 C2b1 bone_petrous 1 YPN025.A0101.TF 1240K half ds haploid https://raw.githubusercontent.com/scarlhoff/Log_Coffin_project/main/Log_Coffin_project_eager2_1240k.yml 41.18 633197 1.1 19 0.02;0 0.01;0 ContamMix v.1.0-10;ANGSD v.0.935 PRJEB59488;SAMEA112466659;ERR10833070 Selina Carlhoff CarlhoffNatureCommunications2023 SoutheastAsia;Thailand;LogCoffin;IronAge +YPN021 YN2#LT-05 Yappa Nhae 2 (L) Petrous part of Temporal bone 11 Thailand_1700BP YPN014 first parent_child KINv.3.1.3 Thailand TH Mae Hong Son Yappa Nhae 2 19.6034 98.2432 340 -70 750 contextual F M7b1a1 bone_petrous 1 YPN021.A0101.TF 1240K half ds haploid https://raw.githubusercontent.com/scarlhoff/Log_Coffin_project/main/Log_Coffin_project_eager2_1240k.yml 15.58 529293 0.8 15.6 0.01 0.01 ContamMix v.1.0-10 PRJEB59488;SAMEA112466656;ERR10833067 Selina Carlhoff CarlhoffNatureCommunications2023 SoutheastAsia;Thailand;LogCoffin;IronAge +YPN036 YN2 478 #35 Thailand_1700BP.contam KINv.3.1.3 Thailand TH Mae Hong Son Yappa Nhae 2 19.6034 98.2432 340 -70 750 contextual U n/a tooth 1 YPN036.A0101.TF 1240K half ds haploid https://raw.githubusercontent.com/scarlhoff/Log_Coffin_project/main/Log_Coffin_project_eager2_1240k.yml 0.84 101945 0.1 15.2 0.06 0.06 ContamMix v.1.0-10 PRJEB59488;SAMEA112466666;ERR10833077 Selina Carlhoff CarlhoffNatureCommunications2023 SoutheastAsia;Thailand;LogCoffin;IronAge +YPN006 YN2#RM-05 Yappa Nhae 2 (R) Petreus 526 14/02/18 Thailand_1700BP KINv.3.1.3 Thailand TH Mae Hong Son Yappa Nhae 2 19.6034 98.2432 340 -70 750 contextual M F1f O1b1a1 bone_petrous 1 YPN006.A0101.TF 1240K half ds haploid https://raw.githubusercontent.com/scarlhoff/Log_Coffin_project/main/Log_Coffin_project_eager2_1240k.yml 5.05 489787 0.7 10.2 0.01;0 0.01;0 ContamMix v.1.0-10;ANGSD v.0.935 PRJEB59488;SAMEA112466642;ERR10833053 Selina Carlhoff CarlhoffNatureCommunications2023 SoutheastAsia;Thailand;LogCoffin;IronAge +YPN010 YN2#Mdcave 01 Yappa Nhae 2 Middle Cave Petrous 4 ps 13/02/20 Thailand_1700BP YPN011 second grandparent_grandchild KINv.3.1.3 Thailand TH Mae Hong Son Yappa Nhae 2 19.6034 98.2432 340 -70 750 contextual F F1a1a1 bone_petrous 1 YPN010.A0101.TF 1240K half ds haploid https://raw.githubusercontent.com/scarlhoff/Log_Coffin_project/main/Log_Coffin_project_eager2_1240k.yml 17.25 699987 1.3 8.7 0.01 0 ContamMix v.1.0-10 PRJEB59488;SAMEA112466646;ERR10833057 Selina Carlhoff CarlhoffNatureCommunications2023 SoutheastAsia;Thailand;LogCoffin;IronAge +YPN017 YN2#RT-05 Yappa Nhae 2 (R) Thailand_1700BP KINv.3.1.3 Thailand TH Mae Hong Son Yappa Nhae 2 19.6034 98.2432 340 -70 750 contextual M N8* O1b1a1a1b bone_petrous 1 YPN017.A0101.TF 1240K half ds haploid https://raw.githubusercontent.com/scarlhoff/Log_Coffin_project/main/Log_Coffin_project_eager2_1240k.yml 9.96 509713 0.7 12.3 0.01;0 0.01;0 ContamMix v.1.0-10;ANGSD v.0.935 PRJEB59488;SAMEA112466652;ERR10833063 Selina Carlhoff CarlhoffNatureCommunications2023 SoutheastAsia;Thailand;LogCoffin;IronAge +YPN020 YN2#LT-04 Yappa Nhae 2 (L) Petrous part of Temporal bone 10 Thailand_1700BP KINv.3.1.3 Thailand TH Mae Hong Son Yappa Nhae 2 19.6034 98.2432 340 -70 750 contextual F M74 bone_petrous 1 YPN020.A0101.TF 1240K half ds haploid https://raw.githubusercontent.com/scarlhoff/Log_Coffin_project/main/Log_Coffin_project_eager2_1240k.yml 15.94 710459 1.3 8.6 0.01 0.005 ContamMix v.1.0-10 PRJEB59488;SAMEA112466655;ERR10833066 Selina Carlhoff CarlhoffNatureCommunications2023 SoutheastAsia;Thailand;LogCoffin;IronAge +YPN032 YN1-MHS'05 Yappa Nhae 1 #19/18 MHS'5 Skull #(1) Petrous? Child 2 ps 12/02/18 Thailand_1700BP YPN033;YPN002 identical;second same_as;second KINv.3.1.3 Thailand TH Mae Hong Son Yappa Nhae 1 19.603809 98.240571 250 -250 750 contextual F F1f bone_petrous 1 YPN032.A0101.TF 1240K half ds haploid https://raw.githubusercontent.com/scarlhoff/Log_Coffin_project/main/Log_Coffin_project_eager2_1240k.yml 4.45 266799 0.3 16.3 0.02 0.02 ContamMix v.1.0-10 PRJEB59488;SAMEA112466664;ERR10833075 Selina Carlhoff CarlhoffNatureCommunications2023 SoutheastAsia;Thailand;LogCoffin;IronAge +LHP002 LHP#17 left Thailand_1700BP KINv.3.1.3 Thailand TH Mae Hong Son Lahu Pot/Moa Mussur 19.5886 98.2618 MAMS-40601 1754 23 287 246 327 C14 M M23'75 O1b1a1a1b1 bone_petrous 1 LHP002.A0101.TF 1240K half ds haploid https://raw.githubusercontent.com/scarlhoff/Log_Coffin_project/main/Log_Coffin_project_eager2_1240k.yml 0.84 469997 0.8 9.4 0;0 0.02;0 ContamMix v.1.0-10;ANGSD v.0.935 PRJEB59488;SAMEA112466635;ERR10833046 Selina Carlhoff CarlhoffNatureCommunications2023 SoutheastAsia;Thailand;LogCoffin;IronAge +YPN014 YN2#RT-06 Yappa Nhae 2 (R) Thailand_1700BP.1stYPN021 YPN021;YPN027 first;second parent_child;second KINv.3.1.3 Thailand TH Mae Hong Son Yappa Nhae 2 19.6034 98.2432 340 -70 750 contextual M M7b1a1 O2a2b1a1a1 bone_petrous 1 YPN014.A0101.TF 1240K half ds haploid https://raw.githubusercontent.com/scarlhoff/Log_Coffin_project/main/Log_Coffin_project_eager2_1240k.yml 2.76 150455 0.1 13.2 0;0 0.01;0 ContamMix v.1.0-10;ANGSD v.0.935 PRJEB59488;SAMEA112466650;ERR10833061 Selina Carlhoff CarlhoffNatureCommunications2023 SoutheastAsia;Thailand;LogCoffin;IronAge +YPN027 YB2#ZoneA2-02Yappa Nhae 2 Zone A2 Petrous 2 ps 13/02/19 Thailand_1700BP YPN014 second second KINv.3.1.3 Thailand TH Mae Hong Son Yappa Nhae 2 19.6034 98.2432 340 -70 750 contextual M F1f O2a2b1a1a1a4a bone_petrous 1 YPN027.A0101.TF 1240K half ds haploid https://raw.githubusercontent.com/scarlhoff/Log_Coffin_project/main/Log_Coffin_project_eager2_1240k.yml 14.67 517358 0.7 10.6 0;0 0;0 ContamMix v.1.0-10;ANGSD v.0.935 PRJEB59488;SAMEA112466660;ERR10833071 Selina Carlhoff CarlhoffNatureCommunications2023 SoutheastAsia;Thailand;LogCoffin;IronAge +YPN001 YN2#LM01 Yappa Nhae (L) Petrous 2 14/02/18 Thailand_1700BP KINv.3.1.3 Thailand TH Mae Hong Son Yappa Nhae 2 19.6034 98.2432 340 -70 750 contextual F M55 bone_petrous 1 YPN001.A0101.TF 1240K half ds haploid https://raw.githubusercontent.com/scarlhoff/Log_Coffin_project/main/Log_Coffin_project_eager2_1240k.yml 3.41 403681 0.5 13 0.01 0.01 ContamMix v.1.0-10 PRJEB59488;SAMEA112466639;ERR10833050 Selina Carlhoff CarlhoffNatureCommunications2023 SoutheastAsia;Thailand;LogCoffin;IronAge +YPN019 YN2#LT-03 Yappa Nhae 2 (L) Petrous part of Temporal bone 9 Thailand_1700BP KINv.3.1.3 Thailand TH Mae Hong Son Yappa Nhae 2 19.6034 98.2432 340 -70 750 contextual M M69 O1b1a1a1b bone_petrous 1 YPN019.A0101.TF 1240K half ds haploid https://raw.githubusercontent.com/scarlhoff/Log_Coffin_project/main/Log_Coffin_project_eager2_1240k.yml 4.78 413444 0.5 13.1 0.01;0 0.005;0 ContamMix v.1.0-10;ANGSD v.0.935 PRJEB59488;SAMEA112466654;ERR10833065 Selina Carlhoff CarlhoffNatureCommunications2023 SoutheastAsia;Thailand;LogCoffin;IronAge +YPN033 YN1#19/18 Yappa Nhae 1 #19/18 MHS'5 Skull #(1) Petrous? Child 2 ps 12/02/19 Thailand_1700BP.identYPN032 YPN032;YPN002 identical;second same_as;second KINv.3.1.3 Thailand TH Mae Hong Son Yappa Nhae 1 19.603809 98.240571 250 -250 750 contextual F n/a bone_petrous 1 YPN033.A0101.TF 1240K half ds haploid https://raw.githubusercontent.com/scarlhoff/Log_Coffin_project/main/Log_Coffin_project_eager2_1240k.yml 0.76 224205 0.2 16 0.01 0.06 ContamMix v.1.0-10 PRJEB59488;SAMEA112466665;ERR10833076 Selina Carlhoff CarlhoffNatureCommunications2023 SoutheastAsia;Thailand;LogCoffin;IronAge +YPN009 YN2#Mdcave 03 Yappa Nhae 2 Middle Cave Petrous 4 ps 13/02/19 Thailand_1700BP KINv.3.1.3 Thailand TH Mae Hong Son Yappa Nhae 2 19.6034 98.2432 340 -70 750 contextual M N8* O2a2b1a1a1a4a bone_petrous 1 YPN009.A0101.TF 1240K half ds haploid https://raw.githubusercontent.com/scarlhoff/Log_Coffin_project/main/Log_Coffin_project_eager2_1240k.yml 4.69 415482 0.5 11.6 0.02;0 0.02;0 ContamMix v.1.0-10;ANGSD v.0.935 PRJEB59488;SAMEA112466645;ERR10833056 Selina Carlhoff CarlhoffNatureCommunications2023 SoutheastAsia;Thailand;LogCoffin;IronAge +YPN013 YN2#RT-01 Yappa Nhae 2 (R) Thailand_1700BP KINv.3.1.3 Thailand TH Mae Hong Son Yappa Nhae 2 19.6034 98.2432 340 -70 750 contextual F F1a1a1 bone_petrous 1 YPN013.A0101.TF 1240K half ds haploid https://raw.githubusercontent.com/scarlhoff/Log_Coffin_project/main/Log_Coffin_project_eager2_1240k.yml 9.02 651991 1.1 9.4 0.01 0.005 ContamMix v.1.0-10 PRJEB59488;SAMEA112466649;ERR10833060 Selina Carlhoff CarlhoffNatureCommunications2023 SoutheastAsia;Thailand;LogCoffin;IronAge +YPN011 YP2#mdcave04 Yappa Nhae 2 Middle Cave Petrous 4 ps 13/02/21 Thailand_1700BP YPN010 second grandparent_grandchild KINv.3.1.3 Thailand TH Mae Hong Son Yappa Nhae 2 19.6034 98.2432 MAMS-40609 1698 20 362 336 387 C14 M F1f O1b1a1a1b bone_petrous 1 YPN011.A0101.TF 1240K half ds haploid https://raw.githubusercontent.com/scarlhoff/Log_Coffin_project/main/Log_Coffin_project_eager2_1240k.yml 35.74 709086 1.4 13.3 0.01;0 0;0 ContamMix v.1.0-10;ANGSD v.0.935 PRJEB59488;SAMEA112466647;ERR10833058 Selina Carlhoff CarlhoffNatureCommunications2023 SoutheastAsia;Thailand;LogCoffin;IronAge +YPN012 YN2#RT02 Yappa Nhae 2 (R) Thailand_1700BP KINv.3.1.3 Thailand TH Mae Hong Son Yappa Nhae 2 19.6034 98.2432 340 -70 750 contextual F M32'56 bone_petrous 1 YPN012.A0101.TF 1240K half ds haploid https://raw.githubusercontent.com/scarlhoff/Log_Coffin_project/main/Log_Coffin_project_eager2_1240k.yml 6.56 469818 0.7 12.2 0.01 0 ContamMix v.1.0-10 PRJEB59488;SAMEA112466648;ERR10833059 Selina Carlhoff CarlhoffNatureCommunications2023 SoutheastAsia;Thailand;LogCoffin;IronAge +YPN031 YN2#29/41-3 Yappa Nhae 2 #29/41 Petrous part of remporal bone (child) 4? Thailand_1700BP KINv.3.1.3 Thailand TH Mae Hong Son Yappa Nhae 2 19.6034 98.2432 340 -70 750 contextual F M7b1a1 bone_petrous 1 YPN031.A0101.TF 1240K half ds haploid https://raw.githubusercontent.com/scarlhoff/Log_Coffin_project/main/Log_Coffin_project_eager2_1240k.yml 4.95 261374 0.3 15.6 0.03 0.03 ContamMix v.1.0-10 PRJEB59488;SAMEA112466663;ERR10833074 Selina Carlhoff CarlhoffNatureCommunications2023 SoutheastAsia;Thailand;LogCoffin;IronAge +YPN008 YN2#Mdcave02 Yappa Nhae 2 Middle Cave Petrous 4 ps 13/02/18 Thailand_1700BP KINv.3.1.3 Thailand TH Mae Hong Son Yappa Nhae 2 19.6034 98.2432 MAMS-40608 1717 20 320 260 380 C14 M D5a2a1+@16172 N1b1 bone_petrous 1 YPN008.A0101.TF 1240K half ds haploid https://raw.githubusercontent.com/scarlhoff/Log_Coffin_project/main/Log_Coffin_project_eager2_1240k.yml 37.65 755278 1.5 10.8 0.01;0 0.005;0 ContamMix v.1.0-10;ANGSD v.0.935 PRJEB59488;SAMEA112466644;ERR10833055 Selina Carlhoff CarlhoffNatureCommunications2023 SoutheastAsia;Thailand;LogCoffin;IronAge +YPN023 YP2#LT01 Yappa Nhae 2 (L) Petrous part of Temporal bone 13 Thailand_1700BP KINv.3.1.3 Thailand TH Mae Hong Son Yappa Nhae 2 19.6034 98.2432 340 -70 750 contextual F G2b1a bone_petrous 1 YPN023.A0101.TF 1240K half ds haploid https://raw.githubusercontent.com/scarlhoff/Log_Coffin_project/main/Log_Coffin_project_eager2_1240k.yml 10.63 624088 1 12.8 0.02 0.02 ContamMix v.1.0-10 PRJEB59488;SAMEA112466658;ERR10833069 Selina Carlhoff CarlhoffNatureCommunications2023 SoutheastAsia;Thailand;LogCoffin;IronAge +YPN028 YN2#29/41-1Yappa Nhae 2 #29/41 Petrous part of remporal bone (child) 4? Thailand_1700BP KINv.3.1.3 Thailand TH Mae Hong Son Yappa Nhae 2 19.6034 98.2432 340 -70 750 contextual F n/a bone_petrous 1 YPN028.A0101.TF 1240K half ds haploid https://raw.githubusercontent.com/scarlhoff/Log_Coffin_project/main/Log_Coffin_project_eager2_1240k.yml 0.94 193760 0.2 15.6 0.03 0.05 ContamMix v.1.0-10 PRJEB59488;SAMEA112466661;ERR10833072 Selina Carlhoff CarlhoffNatureCommunications2023 SoutheastAsia;Thailand;LogCoffin;IronAge +YPN022 YN2#LT-02 Yappa Nhae 2 (L) Petrous part of Temporal bone 12 Thailand_1700BP KINv.3.1.3 Thailand TH Mae Hong Son Yappa Nhae 2 19.6034 98.2432 340 -70 750 contextual F F1a1a1 bone_petrous 1 YPN022.A0101.TF 1240K half ds haploid https://raw.githubusercontent.com/scarlhoff/Log_Coffin_project/main/Log_Coffin_project_eager2_1240k.yml 15.21 559709 0.9 12.1 0.01 0.005 ContamMix v.1.0-10 PRJEB59488;SAMEA112466657;ERR10833068 Selina Carlhoff CarlhoffNatureCommunications2023 SoutheastAsia;Thailand;LogCoffin;IronAge +THL002 TL#24/10 , L petrous part og petrous bone (Child) #24/10, Thailand_1700BP KINv.3.1.3 Thailand TH Mae Hong Son Tham Lod cave 19.568211 98.27972 MAMS-40597 1754 21 287 248 326 C14 F F1f bone_petrous 1 THL002.A0101.TF 1240K half ds haploid https://raw.githubusercontent.com/scarlhoff/Log_Coffin_project/main/Log_Coffin_project_eager2_1240k.yml 12.95 698906 1.5 26.8 0.01 0.01 ContamMix v.1.0-10 PRJEB59488;SAMEA112466636;ERR10833047 Selina Carlhoff CarlhoffNatureCommunications2023 SoutheastAsia;Thailand;LogCoffin;IronAge +YPN030 YN2#29/41-3 Yappa Nhae 2 #29/41 Petrous part of remporal bone (child) 4? Thailand_1700BP KINv.3.1.3 Thailand TH Mae Hong Son Yappa Nhae 2 19.6034 98.2432 340 -70 750 contextual M F1a1a1 O2a2b1a1a1a4a2 bone_petrous 1 YPN030.A0101.TF 1240K half ds haploid https://raw.githubusercontent.com/scarlhoff/Log_Coffin_project/main/Log_Coffin_project_eager2_1240k.yml 11.38 935220 2.9 10.6 0.01;0 0.005;0 ContamMix v.1.0-10;ANGSD v.0.935 PRJEB59488;SAMEA112466662;ERR10833073 Selina Carlhoff CarlhoffNatureCommunications2023 SoutheastAsia;Thailand;LogCoffin;IronAge \ No newline at end of file diff --git a/2023_Carlhoff_Thailand/POSEIDON.yml b/2023_Carlhoff_Thailand/POSEIDON.yml index 6ebee1b2..e2fdaa9d 100644 --- a/2023_Carlhoff_Thailand/POSEIDON.yml +++ b/2023_Carlhoff_Thailand/POSEIDON.yml @@ -18,6 +18,6 @@ genotypeData: indFileChkSum: 957dd2b51dd4214f3f305ec1033bbdfe snpSet: 1240K jannoFile: 2023_Carlhoff_Thailand.janno -jannoFileChkSum: 2ce9bdd46e5a5b063618eb00c38bb43a +jannoFileChkSum: 32827de9e769f11149e1a2905ffb7b99 bibFile: 2023_Carlhoff_Thailand.bib bibFileChkSum: f21742c6e0f6b815ef03750e8c859581