From 13ef560dea979500958f874035a67d8736e586b0 Mon Sep 17 00:00:00 2001
From: updega2 <updega2@berkeley.edu>
Date: Mon, 9 Jan 2017 10:58:14 -0800
Subject: [PATCH 1/2] DEV: Including svsolver thirdparty

---
 Code/FlowSolvers/CMakeLists.txt | 73 +++++++++++++++++++++++++++++++++
 1 file changed, 73 insertions(+)

diff --git a/Code/FlowSolvers/CMakeLists.txt b/Code/FlowSolvers/CMakeLists.txt
index 67cd432e..0f230a1f 100644
--- a/Code/FlowSolvers/CMakeLists.txt
+++ b/Code/FlowSolvers/CMakeLists.txt
@@ -28,6 +28,79 @@
  #
  #=========================================================================#
 set(INDENTS "${INDENTS}    ")
+set(SV_FLOWSOLVERS_DIR ${CMAKE_CURRENT_SOURCE_DIR})
+
+macro(svsolver_third_party _pkg)
+	string(TOLOWER "${_pkg}" _lower)
+	string(TOUPPER "${_pkg}" _upper)
+
+	set(options OPTIONAL VERSION_EXACT
+		DOWNLOADABLE SYSTEM_DEFAULT
+		SVEXTERN_CONFIG ADD_INSTALL
+		)
+	set(oneValueArgs VERSION)
+	set(multiValueArgs PATHS HINTS COMPONENTS)
+
+	CMAKE_PARSE_ARGUMENTS("svsolver_third_party"
+		"${options}"
+		"${oneValueArgs}" "${multiValueArgs}" ${ARGN} )
+	set(${_upper}_SUBDIR ThirdParty/${_pkg})
+	if(svsolver_third_party_SYSTEM_DEFAULT)
+		option(SV_USE_SYSTEM_${_upper} "Use system ${_pkg}" ON)
+	else()
+		option(SV_USE_SYSTEM_${_upper} "Use system ${_pkg}" OFF)
+	endif()
+
+	mark_as_advanced(SV_USE_SYSTEM_${_upper})
+
+  configure_file(${SV_FLOWSOLVERS_DIR}/../${${_upper}_SUBDIR}/simvascular_${_lower}.h.in
+		${SV_BINARY_DIR}/${${_upper}_SUBDIR}/simvascular_${_lower}.h)
+  include_directories(BEFORE ${SV_BINARY_DIR}/../${${_upper}_SUBDIR} ${SV_FLOWSOLVERS_DIR}/${${_upper}_SUBDIR})
+	if(SV_USE_SYSTEM_${_upper})
+		set(${_upper}_LIBRARIES)
+		set(${_upper}_LIBRARY)
+	else()
+    set(${_upper}_LIBRARY_NAME _simvascular_thirdparty_${_lower})
+    include(${SV_FLOWSOLVERS_DIR}/${${_upper}_SUBDIR}/simvascular_${_lower})
+	endif()
+endmacro()
+
+option(SV_USE_SPARSE "Use sparse Library" ON)
+option(SV_USE_METIS "Use metis Library" ON)
+option(SV_USE_NSPCG "Use nspcg Library" ON)
+#-----------------------------------------------------------------------------
+# Add libraries for flowsolver
+if(SV_USE_SPARSE)
+	SET(USE_SPARSE ON)
+	svsolver_third_party(sparse)
+	if(NOT SV_USE_SYSTEM_SPARSE)
+          set(SPARSE_LIBRARY ${SV_LIB_THIRDPARTY_SPARSE_NAME})
+	else()
+		find_package(SPARSE)
+	endif()
+endif()
+
+if(SV_USE_METIS)
+	SET(USE_METIS ON)
+	svsolver_third_party(metis)
+	if(NOT SV_USE_SYSTEM_METIS)
+          set(METIS_LIBRARY ${SV_LIB_THIRDPARTY_METIS_NAME})
+	else()
+		find_package(METIS)
+	endif()
+endif()
+
+if(SV_USE_NSPCG)
+	SET(USE_NSPCG ON)
+	svsolver_third_party(nspcg)
+	if(NOT SV_USE_SYSTEM_NSPCG)
+          set(NSPCG_LIBRARY ${SV_LIB_THIRDPARTY_NSPCG_NAME})
+	else()
+		find_package(NSPCG)
+	endif()
+endif()
+
+
 if(SV_SUPERBUILD)
 	RETURN()
 	###### RETURN_SUPERBUILD ######

From 1f47fe58426fdaaca50d0d35c158d829e8225f4a Mon Sep 17 00:00:00 2001
From: updega2 <updega2@berkeley.edu>
Date: Mon, 9 Jan 2017 11:12:15 -0800
Subject: [PATCH 2/2] BUILD: Update to svsolver cmake to include svsolver
 thirdparty libs

---
 Code/FlowSolvers/CMakeLists.txt              | 4 ++--
 Code/FlowSolvers/ThreeDSolver/CMakeLists.txt | 6 ------
 2 files changed, 2 insertions(+), 8 deletions(-)

diff --git a/Code/FlowSolvers/CMakeLists.txt b/Code/FlowSolvers/CMakeLists.txt
index 0f230a1f..bc11818f 100644
--- a/Code/FlowSolvers/CMakeLists.txt
+++ b/Code/FlowSolvers/CMakeLists.txt
@@ -55,13 +55,13 @@ macro(svsolver_third_party _pkg)
 
   configure_file(${SV_FLOWSOLVERS_DIR}/../${${_upper}_SUBDIR}/simvascular_${_lower}.h.in
 		${SV_BINARY_DIR}/${${_upper}_SUBDIR}/simvascular_${_lower}.h)
-  include_directories(BEFORE ${SV_BINARY_DIR}/../${${_upper}_SUBDIR} ${SV_FLOWSOLVERS_DIR}/${${_upper}_SUBDIR})
+  include_directories(BEFORE ${SV_BINARY_DIR}/${${_upper}_SUBDIR} ${SV_FLOWSOLVERS_DIR}/../${${_upper}_SUBDIR})
 	if(SV_USE_SYSTEM_${_upper})
 		set(${_upper}_LIBRARIES)
 		set(${_upper}_LIBRARY)
 	else()
     set(${_upper}_LIBRARY_NAME _simvascular_thirdparty_${_lower})
-    include(${SV_FLOWSOLVERS_DIR}/${${_upper}_SUBDIR}/simvascular_${_lower})
+    add_subdirectory(${SV_FLOWSOLVERS_DIR}/../${${_upper}_SUBDIR}/simvascular_${_lower} ${SV_BINARY_DIR}/${${_upper}_SUBDIR}/simvascular_${lower})
 	endif()
 endmacro()
 
diff --git a/Code/FlowSolvers/ThreeDSolver/CMakeLists.txt b/Code/FlowSolvers/ThreeDSolver/CMakeLists.txt
index cc171f58..83785d33 100644
--- a/Code/FlowSolvers/ThreeDSolver/CMakeLists.txt
+++ b/Code/FlowSolvers/ThreeDSolver/CMakeLists.txt
@@ -29,7 +29,6 @@
  #=========================================================================#
 
 # Include Flowsolver Configuration File
-include(flowsolverConfig)
 set(INDENTS "${INDENTS}    ")
 # Include svLS Folder
 #include_directories(${SVLS_INCLUDE_DIR})
@@ -44,11 +43,6 @@ if(SV_THREEDSOLVER_USE_SVPOST)
 	set(SV_THREEDSOLVER_USE_SOLVERIO ON)
 endif()
 
-#-----------------------------------------------------------------------------
-# SolverIO
-if(SV_THREEDSOLVER_USE_SOLVERIO)
-	set(FLOWSOLVER_SUBDIRS ${FLOWSOLVER_SUBDIRS} SolverIO)
-endif()
 #-----------------------------------------------------------------------------
 # Presolver
 if(SV_THREEDSOLVER_USE_SVPRE)