From 9984eb32dda72d58e51a8da935d943b0d172bd28 Mon Sep 17 00:00:00 2001
From: anroy1 <a.royer111@gmail.com>
Date: Tue, 24 Sep 2024 16:47:07 +0000
Subject: [PATCH] Run tests

---
 .../synthseg/tests/main.nf.test.snap          | 67 +++++++++++++++++++
 .../synthseg/tests/nextflow_basic.config      |  2 +-
 2 files changed, 68 insertions(+), 1 deletion(-)
 create mode 100644 modules/nf-neuro/segmentation/synthseg/tests/main.nf.test.snap

diff --git a/modules/nf-neuro/segmentation/synthseg/tests/main.nf.test.snap b/modules/nf-neuro/segmentation/synthseg/tests/main.nf.test.snap
new file mode 100644
index 0000000..a60de29
--- /dev/null
+++ b/modules/nf-neuro/segmentation/synthseg/tests/main.nf.test.snap
@@ -0,0 +1,67 @@
+{
+    "segmentation - synthseg - options": {
+        "content": [
+            "test__mask_wm.nii.gz:md5:header,a0430ca63ccc3bb2b925694cb7568388,data,95946cf22f6adf539b65c72b49eb3b32",
+            "test__mask_gm.nii.gz:md5:header,a0430ca63ccc3bb2b925694cb7568388,data,a54f8c03a17a16d9271534c387434720",
+            "test__mask_csf.nii.gz:md5:header,a0430ca63ccc3bb2b925694cb7568388,data,3895c471bc8b06446a8adbba9fe235f7",
+            "test__parc.nii.gz:md5:header,a0430ca63ccc3bb2b925694cb7568388,data,cb9a481316ae64dceb229879bd0c6619",
+            [
+                
+            ],
+            [
+                [
+                    {
+                        "id": "test"
+                    },
+                    "test__vol.csv:md5,c5c29a038e4f43abcce1845bc429952c"
+                ]
+            ],
+            [
+                [
+                    {
+                        "id": "test"
+                    },
+                    "test__qc.csv:md5,333de3d7b60916596f0460c808b598f5"
+                ]
+            ],
+            [
+                "versions.yml:md5,b65418e9ce2ab1cce590b1f659e18c1d"
+            ]
+        ],
+        "meta": {
+            "nf-test": "0.9.0",
+            "nextflow": "24.04.4"
+        },
+        "timestamp": "2024-09-24T15:18:05.139687"
+    },
+    "segmentation - synthseg - basic": {
+        "content": [
+            "test__mask_wm.nii.gz:md5:header,a0430ca63ccc3bb2b925694cb7568388,data,1b5a4d63ae2b56d9d6936313b5225b55",
+            "test__mask_gm.nii.gz:md5:header,a0430ca63ccc3bb2b925694cb7568388,data,c093a4b4c8c5804342b7ea8eea6164fb",
+            "test__mask_csf.nii.gz:md5:header,a0430ca63ccc3bb2b925694cb7568388,data,c9abaab9c5e047fadf928a6520929d5e",
+            [
+                "versions.yml:md5,b65418e9ce2ab1cce590b1f659e18c1d"
+            ]
+        ],
+        "meta": {
+            "nf-test": "0.9.0",
+            "nextflow": "24.04.4"
+        },
+        "timestamp": "2024-09-24T16:30:16.454647"
+    },
+    "segmentation - synthseg - lesion": {
+        "content": [
+            "test__mask_wm.nii.gz:md5:header,a0430ca63ccc3bb2b925694cb7568388,data,6d99d71cff4a2f9d147c45b1ee36dce0",
+            "test__mask_gm.nii.gz:md5:header,a0430ca63ccc3bb2b925694cb7568388,data,c093a4b4c8c5804342b7ea8eea6164fb",
+            "test__mask_csf.nii.gz:md5:header,a0430ca63ccc3bb2b925694cb7568388,data,c9abaab9c5e047fadf928a6520929d5e",
+            [
+                "versions.yml:md5,b65418e9ce2ab1cce590b1f659e18c1d"
+            ]
+        ],
+        "meta": {
+            "nf-test": "0.9.0",
+            "nextflow": "24.04.4"
+        },
+        "timestamp": "2024-09-24T15:19:58.108829"
+    }
+}
\ No newline at end of file
diff --git a/modules/nf-neuro/segmentation/synthseg/tests/nextflow_basic.config b/modules/nf-neuro/segmentation/synthseg/tests/nextflow_basic.config
index b520af9..a727a9f 100644
--- a/modules/nf-neuro/segmentation/synthseg/tests/nextflow_basic.config
+++ b/modules/nf-neuro/segmentation/synthseg/tests/nextflow_basic.config
@@ -1,5 +1,5 @@
 process {
-    memory = "8G"
+    memory = "10G"
     publishDir = { "${params.outdir}/${task.process.tokenize(':')[-1].tokenize('_')[0].toLowerCase()}" }
     ext.fast = true
 }