Customising a run of Tractoflow with lesion dataset

[yizhwan]

I have a dataset of patients with brain tumours and following recommendations from the SCIL paper: https://link.springer.com/chapter/10.1007/978-3-030-00931-1_43 I have created edema corrected tissue segmentations for PFT tractography. I would like to use these maps instead of the default outputs from FAST in tractoflow.

I have tried to do this by copying my new tissue segmentations into the respective subdirectories of the work folder for a previous run of TF (renamed according to TF conventions) but when running TF again with --resume option it doesn;t seem to recognise this and re-runs the segmentation along with many other steps of the diffusion preprocessing- which it had already done previouslyx

Is there any way to do this? Thanks.