Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

About the background sequence in fasta format when used Homer to search motifs. #6

Open
Yiyuan-Ding opened this issue Nov 30, 2023 · 0 comments
Open

About the background sequence in fasta format when used Homer to search motifs. #6

Yiyuan-Ding opened this issue Nov 30, 2023 · 0 comments

Comments

@Yiyuan-Ding
Copy link

Hi, thanks for your greate workflow for m6A-seq analysis. I noticed you used a randomly sampled 200bp peaks as the background sequence when use Homer to search motifs. I am a bit confused about how to build this background sequence. Would you mind to give the detailed steps?
Thanks a lot.
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
1 participant
@Yiyuan-Ding