From 15524a29f51be5218cd8416125494826076e5aea Mon Sep 17 00:00:00 2001
From: Emma Dann <ed6@sanger.ac.uk>
Date: Tue, 28 Nov 2023 11:53:19 +0000
Subject: [PATCH] cleaning

---
 .../tl/de_methods.py                          | 54 -------------------
 1 file changed, 54 deletions(-)
 delete mode 100644 src/multi_condition_comparisions/tl/de_methods.py

diff --git a/src/multi_condition_comparisions/tl/de_methods.py b/src/multi_condition_comparisions/tl/de_methods.py
deleted file mode 100644
index 465590b..0000000
--- a/src/multi_condition_comparisions/tl/de_methods.py
+++ /dev/null
@@ -1,54 +0,0 @@
-from typing import Union, Optional, Sequence, Tuple, Iterable, Dict, Any
-import numpy as np
-import pandas as pd
-
-from anndata import AnnData
-from numpy.typing import ArrayLike
-
-
-def _run_de_pydeseq2(
-        adata: AnnData,
-        design: ArrayLike, 
-        contrast: ArrayLike,      
-    ) -> pd.DataFrame:
-    '''
-    Run differential expression using pydeseq2.
-
-    Params:
-    -------
-    adata: AnnData
-        Annotated data matrix.
-    design: Union[str, ArrayLike]
-        Design matrix with the same number of rows as adata.X.
-    contrast: ArrayLike
-        Binary vector specifying cont
-
-    Returns:
-    --------
-    pd.DataFrame
-        Differential expression results
-    '''
-
-
-def _run_de_deseq2(
-        adata: AnnData,
-        design: ArrayLike, 
-        contrast: str,      
-    ) -> pd.DataFrame:
-    '''
-    Run differential expression using pydeseq2.
-
-    Params:
-    -------
-    adata: AnnData
-        Annotated data matrix.
-    design: Union[str, ArrayLike]
-        Design. Either a matrix with the same number of rows as adata.X or a string of the design formula, or .
-    contrast: str
-        Contrast to test. Must be a string of the form 'condition1 - condition2'.
-
-    Returns:
-    --------
-    pd.DataFrame
-        Differential expression results
-    '''
\ No newline at end of file