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ERROR: Package 'squidpy' requires a different Python: 3.9.13 not in '>=3.10' #947

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sasi-arunachalam opened this issue Jan 25, 2025 · 0 comments

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!pip install git+https://github.com/scverse/squidpy@main

Collecting git+https://github.com/scverse/squidpy@main
Cloning https://github.com/scverse/squidpy (to revision main) to /private/var/folders/y8/f_r4xq2d0pl9ffwb4b9z6bfw0000gn/T/pip-req-build-to2981rm
Running command git clone --filter=blob:none --quiet https://github.com/scverse/squidpy /private/var/folders/y8/f_r4xq2d0pl9ffwb4b9z6bfw0000gn/T/pip-req-build-to2981rm
Resolved https://github.com/scverse/squidpy to commit 6597535
Running command git submodule update --init --recursive -q
Installing build dependencies ... done
Getting requirements to build wheel ... done
Preparing metadata (pyproject.toml) ... done
Collecting aiohttp>=3.8.1 (from squidpy==1.6.3.dev10+g6597535)
Downloading aiohttp-3.11.11-cp39-cp39-macosx_10_9_x86_64.whl.metadata (7.7 kB)
Requirement already satisfied: anndata>=0.9 in /Users/sasi/opt/anaconda3/lib/python3.9/site-packages (from squidpy==1.6.3.dev10+g6597535) (0.9.2)
Requirement already satisfied: cycler>=0.11.0 in /Users/sasi/opt/anaconda3/lib/python3.9/site-packages (from squidpy==1.6.3.dev10+g6597535) (0.11.0)
Collecting dask-image>=0.5.0 (from squidpy==1.6.3.dev10+g6597535)
Downloading dask_image-2024.5.3-py3-none-any.whl.metadata (2.8 kB)
Requirement already satisfied: dask<=2024.11.2,>=2021.02.0 in /Users/sasi/opt/anaconda3/lib/python3.9/site-packages (from dask[array]<=2024.11.2,>=2021.02.0->squidpy==1.6.3.dev10+g6597535) (2022.7.0)
Collecting docrep>=0.3.1 (from squidpy==1.6.3.dev10+g6597535)
Using cached docrep-0.3.2-py3-none-any.whl
Requirement already satisfied: fsspec>=2021.11.0 in /Users/sasi/opt/anaconda3/lib/python3.9/site-packages (from squidpy==1.6.3.dev10+g6597535) (2022.7.1)
Requirement already satisfied: leidenalg>=0.8.2 in /Users/sasi/opt/anaconda3/lib/python3.9/site-packages (from squidpy==1.6.3.dev10+g6597535) (0.10.2)
Collecting matplotlib-scalebar>=0.8.0 (from squidpy==1.6.3.dev10+g6597535)
Downloading matplotlib_scalebar-0.9.0-py3-none-any.whl.metadata (18 kB)
Requirement already satisfied: matplotlib>=3.3 in /Users/sasi/opt/anaconda3/lib/python3.9/site-packages (from squidpy==1.6.3.dev10+g6597535) (3.7.2)
Requirement already satisfied: networkx>=2.6.0 in /Users/sasi/opt/anaconda3/lib/python3.9/site-packages (from squidpy==1.6.3.dev10+g6597535) (2.8.4)
Collecting numba>=0.56.4 (from squidpy==1.6.3.dev10+g6597535)
Downloading numba-0.60.0-cp39-cp39-macosx_10_9_x86_64.whl.metadata (2.7 kB)
Collecting numpy>=1.23.0 (from squidpy==1.6.3.dev10+g6597535)
Downloading numpy-2.0.2-cp39-cp39-macosx_14_0_x86_64.whl.metadata (60 kB)
Collecting omnipath>=1.0.7 (from squidpy==1.6.3.dev10+g6597535)
Downloading omnipath-1.0.8-py3-none-any.whl.metadata (6.5 kB)
Requirement already satisfied: pandas>=2.1.0 in /Users/sasi/opt/anaconda3/lib/python3.9/site-packages (from squidpy==1.6.3.dev10+g6597535) (2.2.3)
Requirement already satisfied: pillow>=8.0.0 in /Users/sasi/opt/anaconda3/lib/python3.9/site-packages (from squidpy==1.6.3.dev10+g6597535) (9.2.0)
Requirement already satisfied: scanpy>=1.9.3 in /Users/sasi/opt/anaconda3/lib/python3.9/site-packages (from squidpy==1.6.3.dev10+g6597535) (1.10.0)
Collecting scikit-image>=0.20 (from squidpy==1.6.3.dev10+g6597535)
Downloading scikit_image-0.24.0-cp39-cp39-macosx_10_9_x86_64.whl.metadata (14 kB)
Requirement already satisfied: scikit-learn>=0.24.0 in /Users/sasi/opt/anaconda3/lib/python3.9/site-packages (from squidpy==1.6.3.dev10+g6597535) (1.2.2)
Collecting spatialdata>=0.2.5 (from squidpy==1.6.3.dev10+g6597535)
Downloading spatialdata-0.2.5.post0-py3-none-any.whl.metadata (9.6 kB)
Requirement already satisfied: statsmodels>=0.12.0 in /Users/sasi/opt/anaconda3/lib/python3.9/site-packages (from squidpy==1.6.3.dev10+g6597535) (0.13.2)
Requirement already satisfied: tifffile!=2022.4.22 in /Users/sasi/opt/anaconda3/lib/python3.9/site-packages (from squidpy==1.6.3.dev10+g6597535) (2021.7.2)
Requirement already satisfied: tqdm>=4.50.2 in /Users/sasi/opt/anaconda3/lib/python3.9/site-packages (from squidpy==1.6.3.dev10+g6597535) (4.64.1)
Collecting validators>=0.18.2 (from squidpy==1.6.3.dev10+g6597535)
Downloading validators-0.34.0-py3-none-any.whl.metadata (3.8 kB)
Requirement already satisfied: xarray<2024.10.0,>=0.16.1 in /Users/sasi/opt/anaconda3/lib/python3.9/site-packages (from squidpy==1.6.3.dev10+g6597535) (0.20.1)
Collecting zarr<3.0.0,>=2.6.1 (from squidpy==1.6.3.dev10+g6597535)
Downloading zarr-2.18.2-py3-none-any.whl.metadata (5.7 kB)
INFO: pip is looking at multiple versions of squidpy to determine which version is compatible with other requirements. This could take a while.
ERROR: Package 'squidpy' requires a different Python: 3.9.13 not in '>=3.10'

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