From 7442181d9275509f630b675e823e19816a67c9e5 Mon Sep 17 00:00:00 2001 From: Enrico Seiler Date: Fri, 27 Sep 2024 14:58:41 +0200 Subject: [PATCH] [DOC] Use SPDX Licenses --- .github/dependabot.yml | 13 +++ .github/workflows/ci_license.yml | 33 ++++++ .github/workflows/ci_linux.yml | 4 +- .gitignore | 4 + CMakeLists.txt | 4 + LICENSE.md | 34 ++---- LICENSES/BSD-3-Clause.txt | 11 ++ LICENSES/CC-BY-4.0.txt | 156 ++++++++++++++++++++++++++++ LICENSES/CC0-1.0.txt | 121 +++++++++++++++++++++ LICENSES/MIT.txt | 9 ++ README.md | 8 +- cmake/package-lock.cmake | 4 +- doc/CMakeLists.txt | 4 + doc/README.md | 6 ++ doc/doxygen_cfg | 4 + include/estimate.hpp | 9 +- include/ibf.hpp | 9 +- include/shared.hpp | 9 +- src/CMakeLists.txt | 4 + src/estimate.cpp | 9 +- src/ibf.cpp | 9 +- src/main.cpp | 9 +- test/CMakeLists.txt | 2 +- test/api/CMakeLists.txt | 2 +- test/api/README.md | 6 ++ test/api/count_test.cpp | 4 + test/api/estimate_test.cpp | 4 + test/api/ibf_test.cpp | 4 + test/api/ibfmin_test.cpp | 4 + test/api/insert_delete_test.cpp | 4 + test/api/minimiser_test.cpp | 4 + test/cli/CMakeLists.txt | 2 +- test/cli/README.md | 6 ++ test/cli/count_options_test.cpp | 4 + test/cli/delete_options_test.cpp | 4 + test/cli/estimate_options_test.cpp | 4 + test/cli/ibf_options_test.cpp | 4 + test/cli/insert_options_test.cpp | 4 + test/cli/minimiser_options_test.cpp | 4 + test/cli/needle_options_test.cpp | 4 + test/data/REUSE.toml | 14 +++ utils/REUSE.toml | 13 +++ 42 files changed, 499 insertions(+), 71 deletions(-) create mode 100644 .github/dependabot.yml create mode 100644 .github/workflows/ci_license.yml create mode 100644 LICENSES/BSD-3-Clause.txt create mode 100644 LICENSES/CC-BY-4.0.txt create mode 100644 LICENSES/CC0-1.0.txt create mode 100644 LICENSES/MIT.txt create mode 100644 test/data/REUSE.toml create mode 100644 utils/REUSE.toml diff --git a/.github/dependabot.yml b/.github/dependabot.yml new file mode 100644 index 0000000..ba5cc58 --- /dev/null +++ b/.github/dependabot.yml @@ -0,0 +1,13 @@ +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: CC0-1.0 + +# https://docs.github.com/github/administering-a-repository/configuration-options-for-dependency-updates + +version: 2 +updates: + + - package-ecosystem: "github-actions" + directory: "/" + schedule: + interval: "weekly" diff --git a/.github/workflows/ci_license.yml b/.github/workflows/ci_license.yml new file mode 100644 index 0000000..554068d --- /dev/null +++ b/.github/workflows/ci_license.yml @@ -0,0 +1,33 @@ +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: CC0-1.0 + +name: License + +on: + push: + branches: + - 'main' + pull_request: + types: + - unlabeled + workflow_dispatch: + +concurrency: + group: license-${{ github.event.pull_request.number || github.ref }} + cancel-in-progress: ${{ github.event_name != 'push' }} + +env: + TZ: Europe/Berlin + +jobs: + check: + name: REUSE Compliance + runs-on: ubuntu-latest + if: github.repository_owner == 'seqan' || github.event_name == 'workflow_dispatch' || github.event.label.name == 'lint' + steps: + - name: Checkout + uses: actions/checkout@v4 + + - name: REUSE Compliance Check + uses: fsfe/reuse-action@v4 diff --git a/.github/workflows/ci_linux.yml b/.github/workflows/ci_linux.yml index 3097556..a88fe25 100644 --- a/.github/workflows/ci_linux.yml +++ b/.github/workflows/ci_linux.yml @@ -1,5 +1,5 @@ -# SPDX-FileCopyrightText: 2006-2023, Knut Reinert & Freie Universität Berlin -# SPDX-FileCopyrightText: 2016-2023, Knut Reinert & MPI für molekulare Genetik +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik # SPDX-License-Identifier: CC0-1.0 name: Linux diff --git a/.gitignore b/.gitignore index 40557fb..f056b7c 100644 --- a/.gitignore +++ b/.gitignore @@ -1,3 +1,7 @@ +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: CC0-1.0 + # Prerequisites *.d diff --git a/CMakeLists.txt b/CMakeLists.txt index 142dad4..c125d4f 100644 --- a/CMakeLists.txt +++ b/CMakeLists.txt @@ -1,3 +1,7 @@ +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: BSD-3-Clause + cmake_minimum_required (VERSION 3.25...3.30) # Define the application name and version. diff --git a/LICENSE.md b/LICENSE.md index 9a6ac6e..5e85fa9 100644 --- a/LICENSE.md +++ b/LICENSE.md @@ -1,29 +1,9 @@ -BSD 3-Clause License +In Needle, we have adopted the use of SPDX identifiers to specify the license under which each file is provided. -Copyright (c) 2021, Mitra Darvish -All rights reserved. +This approach simplifies the process of license declaration as it replaces the full license text with a single line +identifier. 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Affirmer understands and acknowledges that Creative Commons is not a + party to this document and has no duty or obligation with respect to + this CC0 or use of the Work. diff --git a/LICENSES/MIT.txt b/LICENSES/MIT.txt new file mode 100644 index 0000000..2071b23 --- /dev/null +++ b/LICENSES/MIT.txt @@ -0,0 +1,9 @@ +MIT License + +Copyright (c) + +Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions: + +The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software. + +THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. diff --git a/README.md b/README.md index c0c0b83..f79ce0d 100644 --- a/README.md +++ b/README.md @@ -1,4 +1,10 @@ -## Needle [![build status][1]][2] [![codecov][3]][4] [![install with bioconda][5]][6] + + +# Needle [![build status][1]][2] [![codecov][3]][4] [![install with bioconda][5]][6] [1]: https://img.shields.io/github/actions/workflow/status/seqan/needle/ci_linux.yml?branch=main&style=flat&logo=github&label=CI "Open GitHub actions page" [2]: https://github.com/seqan/needle/actions?query=branch%3Amain diff --git a/cmake/package-lock.cmake b/cmake/package-lock.cmake index e13cd33..ebd0ee8 100644 --- a/cmake/package-lock.cmake +++ b/cmake/package-lock.cmake @@ -1,5 +1,5 @@ -# SPDX-FileCopyrightText: 2006-2023, Knut Reinert & Freie Universität Berlin -# SPDX-FileCopyrightText: 2016-2023, Knut Reinert & MPI für molekulare Genetik +# SPDX-FileCopyrightText: 2006-2024, Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024, Knut Reinert & MPI für molekulare Genetik # SPDX-License-Identifier: CC0-1.0 # CPM Package Lock diff --git a/doc/CMakeLists.txt b/doc/CMakeLists.txt index 2d660ad..a4ca4ed 100644 --- a/doc/CMakeLists.txt +++ b/doc/CMakeLists.txt @@ -1,3 +1,7 @@ +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: BSD-3-Clause + cmake_minimum_required (VERSION 3.25...3.30) # Find doxygen. diff --git a/doc/README.md b/doc/README.md index 2a56fbd..e828106 100644 --- a/doc/README.md +++ b/doc/README.md @@ -1,3 +1,9 @@ + + # Documentation To build the API documentation, you need to install `doxygen`. We use Doxygen version 1.8.17. diff --git a/doc/doxygen_cfg b/doc/doxygen_cfg index 3c1d391..480dd0f 100644 --- a/doc/doxygen_cfg +++ b/doc/doxygen_cfg @@ -1,3 +1,7 @@ +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: BSD-3-Clause + # Doxyfile 1.9.4 #--------------------------------------------------------------------------- diff --git a/include/estimate.hpp b/include/estimate.hpp index cee6977..6395286 100644 --- a/include/estimate.hpp +++ b/include/estimate.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2021, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2021, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/needle/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #pragma once diff --git a/include/ibf.hpp b/include/ibf.hpp index 911c776..a2a2268 100644 --- a/include/ibf.hpp +++ b/include/ibf.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2021, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2021, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/needle/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #pragma once diff --git a/include/shared.hpp b/include/shared.hpp index 53eee22..756b4ff 100644 --- a/include/shared.hpp +++ b/include/shared.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2021, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2021, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/needle/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #pragma once diff --git a/src/CMakeLists.txt b/src/CMakeLists.txt index 071777e..52b3dfa 100644 --- a/src/CMakeLists.txt +++ b/src/CMakeLists.txt @@ -1,3 +1,7 @@ +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: BSD-3-Clause + cmake_minimum_required (VERSION 3.25...3.30) find_package (OpenMP REQUIRED COMPONENTS CXX) diff --git a/src/estimate.cpp b/src/estimate.cpp index 701c6d4..7127050 100644 --- a/src/estimate.cpp +++ b/src/estimate.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2021, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2021, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/needle/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include #include diff --git a/src/ibf.cpp b/src/ibf.cpp index 3be21d3..3bc36b9 100644 --- a/src/ibf.cpp +++ b/src/ibf.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2021, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2021, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/needle/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include //reorded because of this error:https://github.com/Homebrew/homebrew-core/issues/44579 #include diff --git a/src/main.cpp b/src/main.cpp index e1db188..5fab2d2 100644 --- a/src/main.cpp +++ b/src/main.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2021, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2021, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/needle/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/CMakeLists.txt b/test/CMakeLists.txt index aedd0dd..c51ae27 100644 --- a/test/CMakeLists.txt +++ b/test/CMakeLists.txt @@ -1,6 +1,6 @@ # SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin # SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik -# SPDX-License-Identifier: CC0-1.0 +# SPDX-License-Identifier: BSD-3-Clause cmake_minimum_required (VERSION 3.25...3.30) diff --git a/test/api/CMakeLists.txt b/test/api/CMakeLists.txt index 26aea24..3be2337 100644 --- a/test/api/CMakeLists.txt +++ b/test/api/CMakeLists.txt @@ -1,6 +1,6 @@ # SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin # SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik -# SPDX-License-Identifier: CC0-1.0 +# SPDX-License-Identifier: BSD-3-Clause cmake_minimum_required (VERSION 3.25...3.30) diff --git a/test/api/README.md b/test/api/README.md index 7557524..d71b6ee 100644 --- a/test/api/README.md +++ b/test/api/README.md @@ -1,3 +1,9 @@ + + # API Test Here are test files for API tests, i.e. the internal functions of the app are executed with different input parameters. diff --git a/test/api/count_test.cpp b/test/api/count_test.cpp index 565b6f8..f498af3 100644 --- a/test/api/count_test.cpp +++ b/test/api/count_test.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause + #include #include diff --git a/test/api/estimate_test.cpp b/test/api/estimate_test.cpp index 6d7ad28..4a11614 100644 --- a/test/api/estimate_test.cpp +++ b/test/api/estimate_test.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause + #include #include diff --git a/test/api/ibf_test.cpp b/test/api/ibf_test.cpp index 740f837..74552b6 100644 --- a/test/api/ibf_test.cpp +++ b/test/api/ibf_test.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause + #include #include diff --git a/test/api/ibfmin_test.cpp b/test/api/ibfmin_test.cpp index ce03d07..91003f2 100644 --- a/test/api/ibfmin_test.cpp +++ b/test/api/ibfmin_test.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause + #include #include diff --git a/test/api/insert_delete_test.cpp b/test/api/insert_delete_test.cpp index bdd0172..35d7792 100644 --- a/test/api/insert_delete_test.cpp +++ b/test/api/insert_delete_test.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause + #include #include diff --git a/test/api/minimiser_test.cpp b/test/api/minimiser_test.cpp index cf48248..b17fbfc 100644 --- a/test/api/minimiser_test.cpp +++ b/test/api/minimiser_test.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause + #include #include diff --git a/test/cli/CMakeLists.txt b/test/cli/CMakeLists.txt index ca75ed5..1103f6e 100644 --- a/test/cli/CMakeLists.txt +++ b/test/cli/CMakeLists.txt @@ -1,6 +1,6 @@ # SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin # SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik -# SPDX-License-Identifier: CC0-1.0 +# SPDX-License-Identifier: BSD-3-Clause cmake_minimum_required (VERSION 3.25...3.30) diff --git a/test/cli/README.md b/test/cli/README.md index 0d0caa1..46d0705 100644 --- a/test/cli/README.md +++ b/test/cli/README.md @@ -1,3 +1,9 @@ + + # CLI Test Here are test files for command line interface tests, i.e. the app is executed with defined input files and parameters. diff --git a/test/cli/count_options_test.cpp b/test/cli/count_options_test.cpp index 957a201..6c4120f 100644 --- a/test/cli/count_options_test.cpp +++ b/test/cli/count_options_test.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause + #include // strings #include "../app_test.hpp" diff --git a/test/cli/delete_options_test.cpp b/test/cli/delete_options_test.cpp index 0933df2..1c91cf4 100644 --- a/test/cli/delete_options_test.cpp +++ b/test/cli/delete_options_test.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause + #include // strings #include "../app_test.hpp" diff --git a/test/cli/estimate_options_test.cpp b/test/cli/estimate_options_test.cpp index 2d363c4..eae23d4 100644 --- a/test/cli/estimate_options_test.cpp +++ b/test/cli/estimate_options_test.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause + #include // strings #include "../app_test.hpp" diff --git a/test/cli/ibf_options_test.cpp b/test/cli/ibf_options_test.cpp index 1e6d5dd..4096209 100644 --- a/test/cli/ibf_options_test.cpp +++ b/test/cli/ibf_options_test.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause + #include // strings #include "../app_test.hpp" diff --git a/test/cli/insert_options_test.cpp b/test/cli/insert_options_test.cpp index d6a1b9e..86951d8 100644 --- a/test/cli/insert_options_test.cpp +++ b/test/cli/insert_options_test.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause + #include // strings #include "../app_test.hpp" diff --git a/test/cli/minimiser_options_test.cpp b/test/cli/minimiser_options_test.cpp index e0c03ac..2df493e 100644 --- a/test/cli/minimiser_options_test.cpp +++ b/test/cli/minimiser_options_test.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause + #include // strings #include "../app_test.hpp" diff --git a/test/cli/needle_options_test.cpp b/test/cli/needle_options_test.cpp index 5decb12..2165433 100644 --- a/test/cli/needle_options_test.cpp +++ b/test/cli/needle_options_test.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause + #include // strings #include "../app_test.hpp" diff --git a/test/data/REUSE.toml b/test/data/REUSE.toml new file mode 100644 index 0000000..7562f02 --- /dev/null +++ b/test/data/REUSE.toml @@ -0,0 +1,14 @@ +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: CC0-1.0 + +version = 1 +SPDX-PackageName = "Needle" +SPDX-PackageDownloadLocation = "https://github.com/seqan/needle/" + +[[annotations]] +path = "**" +precedence = "aggregate" +SPDX-FileCopyrightText = ["2006-2024, Knut Reinert & Freie Universität Berlin", "2016-2024, Knut Reinert & MPI für molekulare Genetik"] +SPDX-License-Identifier = "CC0-1.0" + diff --git a/utils/REUSE.toml b/utils/REUSE.toml new file mode 100644 index 0000000..d1bbe23 --- /dev/null +++ b/utils/REUSE.toml @@ -0,0 +1,13 @@ +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: CC0-1.0 + +version = 1 +SPDX-PackageName = "Needle" +SPDX-PackageDownloadLocation = "https://github.com/seqan/needle/" + +[[annotations]] +path = "**" +precedence = "aggregate" +SPDX-FileCopyrightText = ["2006-2024, Knut Reinert & Freie Universität Berlin", "2016-2024, Knut Reinert & MPI für molekulare Genetik"] +SPDX-License-Identifier = "BSD-3-Clause"