10_input_and_output.md

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page	Input and Output	/input-and-output/	/inputoutput/

SeqAn supports many standard file formats for sequence analysis and additional provides directives to write new I/O modules. Among the sequence file formats are:

• FASTA/FASTQ,
• indexed FASTA,
• BLAST,
• SAM/BAM
• VCF
• BED
• GFF and GTF

Especially in BAM I/O SeqAn is among the fastest implementations around. Try it out!