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LICENSE.md

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The code found in this repository comprises several parts

  • The bulk of the Perl and R code and some of the bash script comes the repos of Ben Metcalf (https://github.com/BenJamesMetcalf). No copyright notice appears on this code and the default position is that all rights are reserved on this code. I have forked and modified this code by consent as part of a collaborationto make the code portable.

  • The VelvetOptimiser code is (C) Simon Gladman released under a GPL v 2 licence as shown in the program

  • This copyright notice applies only to the programs that are stored in this repo that explicitly incorporate this copyright notice. The rest are neither owned be me or nor copyrigthed by me and I do to purport to license their use.

(C) University of the Witwatersrand, Johannesburg, 2021 Author Scott Hazelhurst

MIT Licence

Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions:

The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software.

THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.