convert-to-pdf.yml

name: Build PDF
on:
  push:
    branches: [main]
    paths:
      - 'docs/REPORT.md'
      - 'docs/images/**'
      - 'protocols/**.md'

jobs:
  # First job: Update REPORT.md
  update-report:
    runs-on: ubuntu-latest
    steps:
      - uses: actions/checkout@v3
      
      - uses: actions/setup-python@v2
        with:
          python-version: '3.x' # Adjust as needed

      - name: Install Python dependencies
        run: |
          python -m pip install --upgrade pip
          # Install any dependencies if needed

      - name: Generate Report
        run: python scripts/create_report.py

      - name: Commit and Push Updated Report
        run: |
          git config user.name "github-actions"
          git config user.email "github-actions@github.com"
          git add docs/REPORT.md
          git commit -m "Update REPORT.md with latest protocols" || echo "No changes to REPORT.md."
          git push --force

  # Second job: Convert REPORT.md to PDF
  converttopdf:
    name: Markdown to PDF
    needs: update-report
    runs-on: ubuntu-latest
    steps:
      - uses: actions/checkout@v3
        with:
          # Ensures the action can push back to the repository
          persist-credentials: true
          fetch-depth: 0 # Fetch all history for .Git based projects

      # Configure Git
      - name: Configure Git
        run: |
          git config user.name "github-actions"
          git config user.email "github-actions@github.com"
          git pull
        
        # Remove the old PDFs
      - name: Remove Outdated PDFs
        run: |
          git rm -r pdfs
          git commit -m "Remove existing pdfs folder"
          git push --force

      - uses: baileyjm02/markdown-to-pdf@v1.2.0
        with:
          input_dir: docs
          output_dir: pdfs
          images_dir: docs/images
          image_import: ./images
          build_html: false

      # Commit and Push
      - name: Commit and Push PDF and HTML to main branch
        run: |
          git add pdfs/
          git status
          git commit -m "Automated commit of PDF and HTML files" -a || echo "No changes to commit."
          git push --force