turborvb-linter-build-test-gnu.yml

# This workflow will build and test TurboRVB.

name: TurboRVB linter-check, build, and test (GNU)

on:
  push:
    branches: [ "main", "devel" ]
  pull_request:
    branches: [ "main", "devel" ]

jobs:
  gnu-test:
    runs-on: ubuntu-latest
    steps:
    - name: Install gfortran and gcc
      run: |
        sudo apt-get update
        sudo apt-get install gfortran

    - name: Install OpenBLAS and LAPACK
      run: sudo apt-get install libopenblas-dev liblapack-dev

    - name: Install OpenMPI
      run: sudo apt-get install openmpi-bin libopenmpi-dev

    - name: Install CMake
      run: sudo apt-get install cmake

    - name: Install and Setup Python
      uses: actions/setup-python@v3
      with:
        python-version: 3.8

    - name: Install python dependencies
      run: pip install numpy scipy pandas

    - name: Checkout the project repository
      uses: actions/checkout@v2

    - name: Lint TurboRVB with devel_tools/run_linter.py
      run: |
        python ./devel_tools/run_linter.py .

    - name: Build TurboRVB with cmake serial and parallel versions
      run: |
        cmake -S. -Bbuild -DEXT_PARALLEL=ON -DCMAKE_C_COMPILER=gcc -DCMAKE_Fortran_COMPILER=gfortran
        cmake --build build -j 2

    - name: Test TurboRVB with ctest both serial and parallel versions
      run: |
        ctest --test-dir build --output-on-failure