diff --git a/applications/auto_setup/setup_gui.py b/applications/auto_setup/setup_gui.py
index 0717aaf..c69373e 100644
--- a/applications/auto_setup/setup_gui.py
+++ b/applications/auto_setup/setup_gui.py
@@ -40,11 +40,16 @@ def __init__(self, parent=None, args=None):
 
         self.connect_buttons()
 
-        self.option_layout: QHBoxLayout = QHBoxLayout()
         self.ssa_cal_checkbox = QCheckBox("SSA Calibration")
+        self.ssa_cal_checkbox.setChecked(True)
         self.autotune_checkbox: QCheckBox = QCheckBox("Auto Tune")
+        self.autotune_checkbox.setChecked(True)
         self.cav_char_checkbox: QCheckBox = QCheckBox("Cavity Characterization")
+        self.cav_char_checkbox.setChecked(True)
         self.rf_ramp_checkbox: QCheckBox = QCheckBox("RF Ramp")
+        self.rf_ramp_checkbox.setChecked(True)
+
+        self.option_layout: QHBoxLayout = QHBoxLayout()
         self.option_layout.addStretch()
         self.option_layout.addWidget(self.ssa_cal_checkbox)
         self.option_layout.addWidget(self.autotune_checkbox)