From 1a01c497efbaacc42ec1f3918d471fbf90fbf093 Mon Sep 17 00:00:00 2001 From: Michael Terry Date: Wed, 8 May 2024 16:40:12 -0400 Subject: [PATCH] docker: depend on ctakes 1.1.1 This hopefully fixes a race condition when restarting cTAKES as we feed it new bsv files. Also bumped ETL's version to 1.1.1 (coincidentally the same :D) --- compose.yaml | 2 +- cumulus_etl/__init__.py | 2 +- cumulus_etl/etl/studies/covid_symptom/covid_tasks.py | 2 +- 3 files changed, 3 insertions(+), 3 deletions(-) diff --git a/compose.yaml b/compose.yaml index 31829c86..20342ae7 100644 --- a/compose.yaml +++ b/compose.yaml @@ -37,7 +37,7 @@ services: - etl-gpu ctakes-covid-base: - image: smartonfhir/ctakes-covid:1.1.0 + image: smartonfhir/ctakes-covid:1.1.1 environment: - ctakes_umlsuser=umls_api_key - ctakes_umlspw=$UMLS_API_KEY diff --git a/cumulus_etl/__init__.py b/cumulus_etl/__init__.py index 35fe00ac..d5d9fc38 100644 --- a/cumulus_etl/__init__.py +++ b/cumulus_etl/__init__.py @@ -1,3 +1,3 @@ """Cumulus public entry point""" -__version__ = "1.1.0" +__version__ = "1.1.1" diff --git a/cumulus_etl/etl/studies/covid_symptom/covid_tasks.py b/cumulus_etl/etl/studies/covid_symptom/covid_tasks.py index aade7bdf..48162460 100644 --- a/cumulus_etl/etl/studies/covid_symptom/covid_tasks.py +++ b/cumulus_etl/etl/studies/covid_symptom/covid_tasks.py @@ -83,7 +83,7 @@ class BaseCovidSymptomNlpResultsTask(tasks.BaseNlpTask): task_version = 4 # Task Version History: # ** 4 (2024-01): Fixed bug preventing our cTAKES symptoms file from having any effect ** - # cTAKES: smartonfhir/ctakes-covid:1.1.0 + # cTAKES: smartonfhir/ctakes-covid:1.1.[01] # cNLP: smartonfhir/cnlp-transformers:negation-0.6.1 # cNLP: smartonfhir/cnlp-transformers:termexists-0.6.1 # ctakesclient: 5.0