init_aln is not registered as a temporary directory that was created by this process

[jpearl01]

Hello, just installed pasta and was trying to check it out, however I ran into this error the first time I ran it (initially was in my Dropbox folder and got the same error, then moved it to a directory located in my home). Currently running Fedora 27, and python 2.7.8 (via pyenv). Any ideas on what could be wrong?

$ python run_pasta.py -i ~/pasta_aligns/boletaceae/boletacea_named_sp_names_4_tree.fa
PASTA INFO: Reading input sequences from '/home/jearl/pasta_aligns/boletaceae/boletacea_named_sp_names_4_tree.fa'...
PASTA INFO: Configuration written to "/home/jearl/pasta_aligns/boletaceae/pastajob_temp_pasta_config.txt".

PASTA INFO: Directory for temporary files created at /home/jearl/.pasta/pastajob/temp0bM8FP
PASTA INFO: Name translation information saved to /home/jearl/pasta_aligns/boletaceae/pastajob_temp_name_translation.txt as safe name, original name, blank line format.
PASTA INFO: Creating a starting tree for the PASTA algorithm...
PASTA INFO: Performing initial alignment of the entire data matrix...
PASTA INFO: Performing initial tree search to get starting tree...
PASTA INFO: Starting PASTA algorithm on initial tree...
PASTA INFO: Max subproblem set to 106
PASTA INFO: Step 0. Realigning with decomposition strategy set to mincluster
PASTA INFO: Step 0. Alignment obtained. Tree inference beginning...
PASTA INFO: realignment accepted and score improved.
PASTA INFO: current score: -69884.174, best score: -69884.174
PASTA INFO: Step 1. Realigning with decomposition strategy set to mincluster
PASTA INFO: Step 1. Alignment obtained. Tree inference beginning...
PASTA INFO: realignment accepted and score improved.
PASTA INFO: current score: -69390.421, best score: -69390.421
PASTA INFO: Step 2. Realigning with decomposition strategy set to mincluster
PASTA INFO: Step 2. Alignment obtained. Tree inference beginning...
PASTA INFO: realignment accepted and score improved.
PASTA INFO: current score: -68971.367, best score: -68971.367
PASTA INFO: Writing resulting alignment to /home/jearl/pasta_aligns/boletaceae/pastajob.marker001.boletacea_named_sp_names_4_tree.fa.aln
PASTA INFO: Writing resulting tree to /home/jearl/pasta_aligns/boletaceae/pastajob.tre
PASTA INFO: Writing resulting likelihood score to /home/jearl/pasta_aligns/boletaceae/pastajob.score.txt
PASTA INFO: The resulting alignment (with the names in a "safe" form) was first written as the file "/home/jearl/pasta_aligns/boletaceae/pastajob_temp_iteration_2_seq_alignment.txt"
PASTA INFO: The resulting tree (with the names in a "safe" form) was first written as the file "/home/jearl/pasta_aligns/boletaceae/pastajob_temp_iteration_2_tree.tre"
Refused to clean '/home/jearl/.pasta/pastajob/temp0bM8FP/init_aln': not created by PASTA
'/home/jearl/.pasta/pastajob/temp0bM8FP/init_aln' is not registered as a temporary directory that was created by this process!
PASTA INFO: Total time spent: 405.391688108s