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Can Piranha automatically infer strand when handling paired-end stranded data? #10

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hepcat72 opened this issue Oct 11, 2019 · 0 comments
Open

Can Piranha automatically infer strand when handling paired-end stranded data? #10

hepcat72 opened this issue Oct 11, 2019 · 0 comments

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@hepcat72
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I have paired-end stranded data. Is piranha strand and mate-pair aware? If the reads overlap and the reverse-read is from the opposite strand, does the peak calling take this into account or do I need to stitch the reads together before mapping & peak-calling?
@hepcat72 hepcat72 changed the title Can Piranha automatically infer strand when handling paired-end data? Can Piranha automatically infer strand when handling paired-end stranded data? Oct 11, 2019
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