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installation failed #22

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santataRU opened this issue Nov 15, 2024 · 0 comments
Open

installation failed #22

santataRU opened this issue Nov 15, 2024 · 0 comments

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@santataRU
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Dear Piranha Developers,

I hope this email finds you well.

I attempted to install Piranha on my Mac Studio (M1 chip) following the provided instructions. However, I encountered some error messages during the installation process (attached below).

I would greatly appreciate your guidance on resolving this issue.

Thank you in advance for your assistance!

Best regards,
Xiao

(base) bieniaszlab@pauls-imac-2 piranha-master % pwd
/Users/bieniaszlab/Documents/xiao/Literature/Piranha/piranha-master
(base) bieniaszlab@pauls-imac-2 piranha-master % ls
Makefile.in NEWS.TXT README.TXT configure configure.ac gpl.txt scripts src
(base) bieniaszlab@pauls-imac-2 piranha-master % ./configure

checking for C++ compiler default output file name... a.out
checking whether the C++ compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C++ compiler... yes
checking whether x86_64-apple-darwin13.4.0-clang++ accepts -g... yes
checking whether we're compiling on Darwin/MacOS... yes
configure: no BAMTools headers directory specified
configure: no BAMTools library directory specified
checking for cos in -lm... yes
checking for cblas_dgemm in -lgslcblas... yes
checking for gsl_blas_dgemm in -lgsl... yes
checking for linking against gsl matrix... yes
checking for BAMTools... no
configure: WARNING: could not find BAMTools, disabling BAM support
configure: creating ./config.status
config.status: creating Makefile
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating src/test/Makefile
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating src/test/Makefile
config.status: creating src/progs/Makefile
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating src/test/Makefile
config.status: creating src/progs/Makefile
config.status: creating src/common/Makefile
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating src/test/Makefile
config.status: creating src/progs/Makefile
config.status: creating src/common/Makefile
config.status: creating src/common/config.hpp
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating src/test/Makefile
config.status: creating src/progs/Makefile
config.status: creating src/common/Makefile
config.status: creating src/common/config.hpp
config.status: creating src/test/regressionTests.xml
(base) bieniaszlab@pauls-imac-2 piranha-master % make all
make[1]: Entering directory '/Users/bieniaszlab/Documents/Xiao/Literature/Piranha/piranha-master/src'
make[2]: Entering directory '/Users/bieniaszlab/Documents/Xiao/Literature/Piranha/piranha-master/src/progs'
make[2]: *** No rule to make target '/Users/bieniaszlab/Documents/Xiao/Literature/Piranha/piranha-master/src/smithlab_cpp/GenomicRegion.o', needed by 'Piranha'. Stop.
make[2]: Leaving directory '/Users/bieniaszlab/Documents/Xiao/Literature/Piranha/piranha-master/src/progs'
make[1]: *** [Makefile:27: all] Error 2
make[1]: Leaving directory '/Users/bieniaszlab/Documents/Xiao/Literature/Piranha/piranha-master/src'
make: *** [Makefile:27: all] Error 2
(base) bieniaszlab@pauls-imac-2 piranha-master %

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