From a4d0ae382bb938a4684b0be56a2a5ce00281b080 Mon Sep 17 00:00:00 2001 From: David Laehnemann Date: Wed, 17 Apr 2024 15:42:10 +0200 Subject: [PATCH] fix: try again with circle_score >= 50 --- workflow/scripts/clean_circle_map_realign_output.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/workflow/scripts/clean_circle_map_realign_output.py b/workflow/scripts/clean_circle_map_realign_output.py index a330087..99a5c02 100644 --- a/workflow/scripts/clean_circle_map_realign_output.py +++ b/workflow/scripts/clean_circle_map_realign_output.py @@ -38,7 +38,7 @@ # filter out low-quality circles, according to: # https://github.com/iprada/Circle-Map/wiki/Circle-Map-Realign-output-files circles = circles.loc[ - ( circles["circle_score"] >= 200 ) & + ( circles["circle_score"] >= 50 ) & ( circles["discordant_reads"] > 0 ) & ( circles["split_reads"] > 0 ) & ( circles["uncovered_fraction"] < 1 )