Changelog

1.4.1 (2024-10-12)

Bug Fixes

de correction (#96) (f56f660)

1.4.0 (2024-10-11)

Features

qm report (#95) (3782c40)

1.3.0 (2024-09-19)

Features

made output temporary for any files not needed for the report (#92) (a95222b)

Bug Fixes

taking absolute l2fc values to sort (#91) (9c009d0)

1.2.0 (2024-09-17)

Features

batch correction (#87) (f174574)
ci pipeline correction (#90) (c41657a)
correcting p-values for multiple testing (#66) (a83d514)
de output (#83) (a2e45bd)
generate snakemake report (#80) (cd25504)
get refs from database (#69) (1b50d39)

Bug Fixes

#82 double p value adjustment (#84) (1d6bfc7)
batch correction (#89) (04fcfcf)
different names for downloads to avoid name clashes (#71) (756ba5b)
quantification (#74) (3d9216e)
quantification input output mismatch (#68) (44e6451)

1.1.0 (2024-08-16)

Features

added new config files for cluster specific configurations (#48) (966e059)
added wrappers (#46) (9c3bfe4)
env update (#45) (030e041)
map qc (#38) (4d5b8bc)
qc rules (#16) (3237e2c)
read length filter (#44) (10a8d93)
Rules moved from snakefile to corresponding SMK files in rule folder. (#54) (ee3dfc1)

Bug Fixes

added import sys for log (#36) (0f8ac63)
added new samples to config (#39) (b993b01)
deployment (#64) (5b137c3)
env update (#42) (704b25c)
fixed read filter.py for read_length=0 (#50) (992346b)
linting for github actions (#56) (54605ae)
lookup #18 (#19) (ed226a3)
pydeseq2 (#52) (f8d566a)
read quantification (#22) (71422a1)
write de params (#62) (b4fb2be)

1.0.0 (2024-04-30)

Features

added dummy 2nd contition to sample file (812fc8a)
customization: mostly scriptizing for snakemake (354a91c)

Bug Fixes

env: fixed env for slurm and fs plugins (65862e0)
param: updated profile for human readable times (a0395a2)
removed 'resdir' parameter from config file (b28fdfe)
using configurable 'MAMBA_EXE' env var instead of a specific conda command (a4b6e18)